RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9800
(486 letters)
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 258 bits (659), Expect = 6e-77
Identities = 133/511 (26%), Positives = 225/511 (44%), Gaps = 58/511 (11%)
Query: 14 EIKYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLS 73
K+KD IYL T+LA G+ G + ++ L+N+ DF + I P+L + +
Sbjct: 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNN------IPH 471
Query: 74 PHLKQIFVLLFQRLSSSKTAKYSK------VSHLESAHPVVHSYASHAIDRVLVMRSPNG 127
L+ + + T + L++ VV++YA+ I+++L +R N
Sbjct: 472 IILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT 531
Query: 128 QGTLV-TADVLAPLAADLYKNLLVIFTRPGSE-----ENEYAMKCIMRSMSTLQDKVVPY 181
+ + ++ L KNL+ + + GS ENE+ M+ I R + T +D + P
Sbjct: 532 SPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPL 591
Query: 182 LSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQV 241
LL Q + + AKNPS P + H+ FE+I + + + ++ P F
Sbjct: 592 FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQNLPLLVDSMMPTFLT 648
Query: 242 IIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLR 301
+ +D EF+PY FQI++ ++E +I L LL+P +W GNI + RLL+
Sbjct: 649 VFSEDIQEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKGNIPAVTRLLK 706
Query: 302 AFITKSEPSQFSATLKLNNVLGVFQKLIASK----------------------------I 333
+FI VLG+FQ+LIASK I
Sbjct: 707 SFIKTDSSIFPDL----VPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQI 762
Query: 334 FVLLFQRLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADL 393
VLL QRL +SKT +Y K L F +G+ LI ID +Q LF + I+ L
Sbjct: 763 AVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTL 822
Query: 394 QKVSGAVNRKIAAFGLAKLLTEAKEVTEG-PYVQAPLTGALLNLIQLPEDDSTQPEDHFV 452
+ ++RKIA G+ ++ + P + + +++ + + + +
Sbjct: 823 PTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDL 882
Query: 453 D-IENILEYDAAYSKLTFAADKEEYDPLSDI 482
D +E I + + +SKL ++K DPL +I
Sbjct: 883 DNLEEISTFGSHFSKLVSISEKPF-DPLPEI 912
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.5 bits (154), Expect = 9e-11
Identities = 78/518 (15%), Positives = 146/518 (28%), Gaps = 193/518 (37%)
Query: 34 TVKHGTTKSSTLV--NL--------EDFAQQHIFP--ELNKPDEL-CPNELLSPHLKQIF 80
T+ HG+ + LV E F + P DE P EL+ L +
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--Y 67
Query: 81 VLLFQRLSSSKTAKYSKV-----SHLESA-------HPVVHS------------------ 110
V + SK ++ +V + E+ H +
Sbjct: 68 VS--SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 111 Y--ASHAIDRVLVMRSP------------------NGQGTLVTADVLAPLAADLYKNLLV 150
Y A R +S GQG T D L DLY+
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN--TDDYFEELR-DLYQ---- 178
Query: 151 IFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPN--YNH- 207
Y + DL+ + L+ + +
Sbjct: 179 ----------TYH----------------VLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 208 -----------------FLFEA------ITLA----IRIVCKQ---NPEAVATFEQALFP 237
+L I + + K P + ++ +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 238 IFQVII------QQDTLE-FLPYTFQILSLLLEFRPRGSISAPYLELYPFLL-------- 282
Q ++ + D+ E F + +++L R + P L P +L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 283 ---SPVLWSRPGNIHPLVR-LLRAFITK---SEPSQFSATLKLNN-----VL-GVFQKLI 329
SP+L +I L + ++ ++ K P+ + L N V+ G Q L
Sbjct: 333 GVPSPML-----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY 387
Query: 330 ASKIFVLLFQRLSSSKT-----AKYSKGLVTFLM-FYVIN--------MGATSLIQLIDS 375
L ++ + +S+ + F F + + A+ LI
Sbjct: 388 G---LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 376 IQGSLFSMVAEKLIL--------ADLQKVSGAVNRKIA 405
F+ A+ + + +DL+ +SG+++ +I
Sbjct: 445 KNNVSFN--AKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Score = 38.9 bits (90), Expect = 0.004
Identities = 43/275 (15%), Positives = 74/275 (26%), Gaps = 76/275 (27%)
Query: 225 PEAVATFEQALFPIFQVIIQQDTLEFL----PYTFQILSLLLEF------RPRGSISAPY 274
P A L F I+ + T F P T L+ +F S +
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTT--PAELVGKFLGYVSSLVEPSKVGQF 80
Query: 275 LELYPFLL----SPVLWSRPGNIHPLVRLLRAFITKSEPSQ-------FSATLKLNNVLG 323
++ L + L +IH L L + +A +
Sbjct: 81 DQVLNLCLTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP-- 136
Query: 324 VFQKLIASKIFVLLFQRLSSSKTAKYSKGLVTFLMF----------------YVINMGAT 367
F K S +F R A+ +F Y
Sbjct: 137 -FDKKSNSALF-----RAVGEGNAQ------LVAIFGGQGNTDDYFEELRDLY--QTYHV 182
Query: 368 SLIQLIDSIQGSLFSMVAEKLILADLQKVSGAVNRKIAAFGLAKLLTEAKEVTEGPY-VQ 426
+ LI +L ++ D +KV + + L + Y +
Sbjct: 183 LVGDLIKFSAETLSELIRTT---LDAEKVFTQG------LNILEWLENPSNTPDKDYLLS 233
Query: 427 APLTGALLNLIQLPEDDSTQPEDHFVDIENILEYD 461
P++ L+ +IQL H+V +L +
Sbjct: 234 IPISCPLIGVIQLA---------HYVVTAKLLGFT 259
Score = 33.5 bits (76), Expect = 0.17
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 53/138 (38%)
Query: 37 HGTTKSSTLVN-----LEDFAQQHIFPELNKPDELCP--------------NELLSPHLK 77
H S LV +D + ++ N D P + +
Sbjct: 428 H----SHLLVPASDLINKDLVKNNV--SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 78 QIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAID---------RVLVMRSPNGQ 128
I L V E+ A+H +D VL R+ +G
Sbjct: 482 CIIRL--------------PV-KWETT---TQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 129 GT-LVTADVLAPLAADLY 145
G ++ A L D Y
Sbjct: 524 GVRVIVAGTLDINPDDDY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 63/458 (13%), Positives = 125/458 (27%), Gaps = 158/458 (34%)
Query: 27 SLASQGSTVKHG---TTKSSTLVN--LEDFAQQHIFP---------ELNKPDELCPNELL 72
L + + G + K+ + + Q N P+ + E+L
Sbjct: 146 ELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EML 202
Query: 73 SPHLKQIFVLLFQRLSSSKTAKY------SKVSHLESAHPVVHSYASHAIDRVLVMR--- 123
L QI R S K +++ L + P + LV+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LVLLNVQ 254
Query: 124 SPN-------GQGTLVT---ADVLAPLAADLYKNLLVIFTRPGSEENE----YAMKCIMR 169
+ L+T V L+A ++ + +E K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDC 313
Query: 170 SMSTL---QDKVVPYLSDLLFQLTQRLAAAAKN-PSKP-NYNHFLFEAITLAIRI-VCKQ 223
L P ++ A + ++ + N+ H + +T I +
Sbjct: 314 RPQDLPREVLTTNPRRLSII-------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 224 NP-EAVATFEQALFPIFQ--VIIQQDTLEFL---------------------------PY 253
P E F++ +F I L +
Sbjct: 367 EPAEYRKMFDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 254 TFQILSLLLEFR-------------------PRG----SISAPYLELYPF---------- 280
T I S+ LE + P+ + PYL+ Y +
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 281 -------LLSPVL----------------WSRPGNIHPL---VRLLRAFITKSEPSQFSA 314
L V W+ G+I ++ + +I ++P ++
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP-KYER 543
Query: 315 TLK--LNNVLGVFQKLIASKIFVLLFQR-LSSSKTAKY 349
+ L+ + + + LI SK + L + L + A +
Sbjct: 544 LVNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIF 580
Score = 55.2 bits (132), Expect = 4e-08
Identities = 79/589 (13%), Positives = 172/589 (29%), Gaps = 191/589 (32%)
Query: 46 VNLEDFAQ----QHIFPELNKP---DELCPNELLSPHLKQIFVLLFQRLSSSKTAKYSK- 97
V + F + + ++ K E + ++S + LF L S + K
Sbjct: 24 VFEDAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 98 ------------------------------VSHLESAHPVVHSYASHAIDR---VLVMRS 124
+ + + +A + + R L +R
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 125 ------PN---------GQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMR 169
P G G +A D+ + V + + ++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDF---KIFWLN--LK 190
Query: 170 SMSTLQDKVVPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCK------- 222
+ ++ + V+ L LL+Q+ + + + S +I +R + K
Sbjct: 191 NCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENC 246
Query: 223 -------QNPEAVATFE---QALF-----PIFQVIIQQDT----LEFLPYTF---QILSL 260
QN +A F + L + + T L+ T ++ SL
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 261 LLEFRPRGSISAPYLEL-------YPFLLS---------PVLWS--RPGNIHPLVRLLRA 302
LL++ + +L P LS W + N L ++ +
Sbjct: 307 LLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 303 FITKSEPSQFSATLKLNNVLGVFQK--LIASKIFVLLFQRLSS-------SKTAKYS--- 350
+ EP+++ L VF I + + L++ + +K KYS
Sbjct: 362 SLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 351 ----KGLVTFLMFY------VINMGA--TSLIQ-------------LIDSIQGSLFSMVA 385
+ ++ Y + N A S++ + + +S +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 386 EKLILADLQKVSGAVNRKIAAFGLAKLLT-----EAKEVTEGPYVQAPLTGALLNLIQLP 440
L + + ++ F + E K + A G++LN +Q
Sbjct: 479 HHLKNIEHPE-------RMTLF--RMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQ-- 525
Query: 441 EDDSTQPEDHFVDIENILEYDAAYSKL-TFAADKEEY---DPLSDIIQV 485
+ + D + +Y+ + + F EE +D++++
Sbjct: 526 --QLKFYKPYICDNDP--KYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Score = 52.5 bits (125), Expect = 2e-07
Identities = 55/324 (16%), Positives = 99/324 (30%), Gaps = 90/324 (27%)
Query: 2 EDKMMGTFGAYVEIKYKD----------TAIYLVTSLASQG----------STVKHGTTK 41
D++ Y++ + +D + ++ G + K T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 42 SSTLVNLEDFAQQH------IFPELNKPDELCPNELLS-------PHLKQIFVLLFQRLS 88
S+L LE + +FP P LLS + V + S
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPP----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 89 S-SKTAKYSKVS----HLESAHPVVHSYASHA--IDRVLVMRSPNGQGTLVTADVLAPLA 141
K K S +S +LE + + YA H +D + ++ + L P
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-------LIPPY 468
Query: 142 ADLYKNLLVIFTRPGSEENEYAMKCIMRS-MSTLQDKVVPYLSDLLFQLTQRLAAAAKNP 200
D Y ++ G + +K I TL V +L D F L Q++ +
Sbjct: 469 LDQY-----FYSHIG-----HHLKNIEHPERMTLFRMV--FL-DFRF-LEQKIRHDSTAW 514
Query: 201 SKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDTLEFLPYTFQILSL 260
+ + + +C +P +E+ + L+FLP + L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP----KYERLV---------NAILDFLPKIEENL-- 559
Query: 261 LLEFRPRGSISAPYLELYPFLLSP 284
I + Y +L L
Sbjct: 560 ---------ICSKYTDLLRIALMA 574
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 43.3 bits (101), Expect = 2e-04
Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 33/229 (14%)
Query: 64 DELCPNELLSPHLKQIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMR 123
D + + HL + L P V + S I ++
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQDH---------------PKVATNCSWTIINLVEQL 484
Query: 124 SPNGQGTLVTADVLAPLAADLYKNLLVIFTRPGSEEN--EYAMKCIMRSMSTLQDKVVPY 181
+ + L L+ R +E N A + + D V
Sbjct: 485 AEATP------SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538
Query: 182 LSDLLFQLTQRLAAA-------AKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQA 234
+ + + +L + +T+ ++ K +
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 235 LFPIFQVIIQQDTLEFLPYTFQILSLLLEFRPRGSISAPYLE-LYPFLL 282
+ F+++ ++D+ F +S L G YLE P+LL
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAAS--LGKGFEKYLETFSPYLL 645
Score = 27.9 bits (61), Expect = 8.7
Identities = 12/125 (9%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 70 ELLSPHLKQIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQG 129
+ ++ I + +L + + ++++ ++ + S+ + + + +
Sbjct: 533 DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQS--LQELQSNILTVLAAVIRKSPS- 589
Query: 130 TLVTADVLAPLAADLYKNLLVIF-TRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLLFQ 188
+ P+A L + + + + I ++L YL
Sbjct: 590 ------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643
Query: 189 LTQRL 193
L + L
Sbjct: 644 LLKAL 648
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 36.7 bits (84), Expect = 0.019
Identities = 33/198 (16%), Positives = 55/198 (27%), Gaps = 30/198 (15%)
Query: 67 CPNELLSPHLKQIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPN 126
+ + P+L ++ L Q LS +V S + R
Sbjct: 389 GCMQGMIPYLPELIPHLIQCLSDK--------------KALVRSITCWTLSRYA------ 428
Query: 127 GQGTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQDKVVPYLSDLL 186
V + L LL E A ++VPYL+ +L
Sbjct: 429 ---HWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYIL 485
Query: 187 FQLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQ-Q 245
L A N L++AI V + + + P+ Q +
Sbjct: 486 ----DTLVFAFSKYQHKN-LLILYDAIGTLADSV-GHHLNKPEYIQMLMPPLIQKWNMLK 539
Query: 246 DTLEFLPYTFQILSLLLE 263
D + L + LS +
Sbjct: 540 DEDKDLFPLLECLSSVAT 557
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 33.3 bits (75), Expect = 0.23
Identities = 40/295 (13%), Positives = 71/295 (24%), Gaps = 46/295 (15%)
Query: 16 KYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLSPH 75
+Y+D A+ + S L L A + + P S
Sbjct: 381 RYRDAAVMAFGCILEGPEP--------SQLKPLVIQAMPTLIELMKDP---------SVV 423
Query: 76 LKQIFVLLFQRLSSSKTAKYSKVSHLE----------SAHPVVHSYASHAIDRVLVMRSP 125
++ R+ +L SA P V S A +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYE 483
Query: 126 NGQ----GTLVTADVLAPLAADLYKNLLVIFTRPGSEENEYAMKCIMRSMSTLQ---DKV 178
L+ + + LL RP +N M ++
Sbjct: 484 AADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC 543
Query: 179 VPYLSDLLFQLTQRLAAAAKNPSKPNYNHFLFEAITL-------AIRIVCKQNPEAVATF 231
P + + +RL + S + L ++ K +
Sbjct: 544 YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI 603
Query: 232 EQALFPIFQVIIQ--QDTLEFLPYTFQILSLLLEFRPRGSISAPYLE-LYPFLLS 283
+ + Q + +S L+E G Y+E PFL
Sbjct: 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV--LGGEFLKYMEAFKPFLGI 656
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural
genomics, PSI-2, protein structure initiative; NMR
{Moorella thermoacetica atcc 39073}
Length = 117
Score = 26.5 bits (59), Expect = 9.6
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 34 TVKHGTTKSSTLVNLEDFAQQHIFPEL-NKPDELCPNELLSPHLKQIFVLLFQRLSSSKT 92
+ ST + E + H+ P L + P LK++ QRL +SK
Sbjct: 19 DYAKPHLRQSTWESYETVLRLHVIPTLGSIP------------LKKLQPADIQRLYASKL 66
Query: 93 AKYSKVSHLESAHPVVHSYASHAIDRVLVMRSP 125
+ + H V+H S A + L++++P
Sbjct: 67 ESGLSPTRVRYIHVVLHEAMSQARESGLLLQNP 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.377
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,045,865
Number of extensions: 421261
Number of successful extensions: 1004
Number of sequences better than 10.0: 1
Number of HSP's gapped: 987
Number of HSP's successfully gapped: 20
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)