RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9800
         (486 letters)



>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score =  224 bits (572), Expect = 4e-65
 Identities = 132/506 (26%), Positives = 224/506 (44%), Gaps = 46/506 (9%)

Query: 14  EIKYKDTAIYLVTSLASQGSTVKHGTTKSSTLVNLEDFAQQHIFPELNKPDELCPNELLS 73
             K+KD  IYL T+LA  G+    G + ++ L+N+ DF  + I P+L   +       + 
Sbjct: 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD 477

Query: 74  PHLKQIFVLLFQRLSSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLV- 132
                         +          + L++   VV++YA+  I+++L +R  N     + 
Sbjct: 478 AIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIF 537

Query: 133 TADVLAPLAADLYKNLLVIFTRPGSE-----ENEYAMKCIMRSMSTLQDKVVPYLSDLLF 187
             + ++     L KNL+ +  + GS      ENE+ M+ I R + T +D + P    LL 
Sbjct: 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA 597

Query: 188 QLTQRLAAAAKNPSKPNYNHFLFEAITLAIRIVCKQNPEAVATFEQALFPIFQVIIQQDT 247
           Q  + +   AKNPS P + H+ FE+I   +        + +     ++ P F  +  +D 
Sbjct: 598 QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ---RQNLPLLVDSMMPTFLTVFSEDI 654

Query: 248 LEFLPYTFQILSLLLEFRPRGSISAPYLELYPFLLSPVLWSRPGNIHPLVRLLRAFITKS 307
            EF+PY FQI++ ++E     +I      L   LL+P +W   GNI  + RLL++FI   
Sbjct: 655 QEFIPYVFQIIAFVVEQSA--TIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTD 712

Query: 308 EPSQFSATLKLNNVLGVFQKLIASK----------------------------IFVLLFQ 339
                S    L  VLG+FQ+LIASK                            I VLL Q
Sbjct: 713 S----SIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ 768

Query: 340 RLSSSKTAKYSKGLVTFLMFYVINMGATSLIQLIDSIQGSLFSMVAEKLILADLQKVSGA 399
           RL +SKT +Y K L  F       +G+  LI  ID +Q  LF  +    I+  L  +   
Sbjct: 769 RLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL 828

Query: 400 VNRKIAAFGLAKLLTEAKEV-TEGPYVQAPLTGALLNLIQLPEDDSTQPEDHF-VDIENI 457
           ++RKIA  G+  ++   +   ++ P + +    +++         + + +     ++E I
Sbjct: 829 LDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEI 888

Query: 458 LEYDAAYSKLTFAADKEEYDPLSDII 483
             + + +SKL   ++K   DPL +I 
Sbjct: 889 STFGSHFSKLVSISEKPF-DPLPEID 913


>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus
           [TaxId: 274]}
          Length = 406

 Score = 28.9 bits (64), Expect = 1.3
 Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 4/83 (4%)

Query: 104 AHPVVHSYASHAIDRVLVMRSPNGQGTLVTADVLAPLAADLYKN---LLVIFTRPGSEEN 160
           A      Y    + R  +  +P           L    A  ++     L +         
Sbjct: 50  ASLFTVIYGDQELARKRLALAPEEGLDKA-PAWLYEGMARAFREGAARLAVSGSDPKALE 108

Query: 161 EYAMKCIMRSMSTLQDKVVPYLS 183
               + + R+         P L 
Sbjct: 109 GLPPEKVGRAQKANARAYKPALE 131


>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
           9606]}
          Length = 127

 Score = 27.8 bits (61), Expect = 1.5
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 5/48 (10%)

Query: 91  KTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPN-----GQGTLVT 133
           K   + ++  L      V+  A           S       GQGT VT
Sbjct: 76  KNTLFLQMDSLRPEDTGVYFCARDGGHGFCSSASCFGPDYWGQGTPVT 123


>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 26.6 bits (58), Expect = 3.4
 Identities = 3/46 (6%), Positives = 13/46 (28%)

Query: 88  SSSKTAKYSKVSHLESAHPVVHSYASHAIDRVLVMRSPNGQGTLVT 133
                +    + +L      ++      +     + +    GT++ 
Sbjct: 71  KLGNESVTFYLQNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIH 116


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 27.7 bits (61), Expect = 3.7
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 450 HFVDIENIL--EYDAAYSKLTFAADKEEYDPLSDIIQV 485
               +++IL   Y   Y K+ F      Y+P+S+I ++
Sbjct: 60  TTAKLQSILFSNYMEEY-KVDFKRSTAIYNPMSEIGKL 96


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 26.7 bits (59), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 44  TLVNLEDFAQQHIFPELNK 62
           TL+  EDFA  + F  L+K
Sbjct: 265 TLIQFEDFANPNAFRLLDK 283


>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 26.3 bits (58), Expect = 7.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 44  TLVNLEDFAQQHIFPELNK 62
           TL+  EDF   + F  L K
Sbjct: 230 TLIQFEDFGNHNAFRFLRK 248


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
           enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 26.2 bits (58), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 42  SSTLVNLEDFAQQHIFPELNK 62
            + L+  EDFA  + F  L+K
Sbjct: 226 MNCLIQFEDFANANAFRLLHK 246


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,653,631
Number of extensions: 73978
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 10
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)