BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9801
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 41 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 100
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 101 PVHKVTK 107
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
With Tubulin Tail
Length = 98
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 12 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 71
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 72 PVHKVTK 78
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 4 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 63
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 64 PVHKVTK 70
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V RYFQC P+FGLFA
Sbjct: 10 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFA 69
Query: 83 PVHKV 87
P+HKV
Sbjct: 70 PIHKV 74
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 99.0 bits (245), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V
Sbjct: 54 SSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGV 113
Query: 70 RYFQCEPRFGLFAPVHKVSK 89
RYFQCEP G+F K+++
Sbjct: 114 RYFQCEPLKGIFTRPSKLTR 133
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRF 78
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 79 GLFAPVHKVSK 89
G+F K+++
Sbjct: 61 GIFTRPSKLTR 71
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%)
Query: 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRF 78
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 79 GLFAPVHKVSKS 90
G+F K+++
Sbjct: 61 GIFTRPSKLTRK 72
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 92.0 bits (227), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 15 TEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 74
+ + F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQC
Sbjct: 2 SSGSSGFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQC 61
Query: 75 EPRFGLFAPVHKVSK 89
EP G+F K+++
Sbjct: 62 EPLKGIFTRPSKLTR 76
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C G+
Sbjct: 19 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGI 78
Query: 81 FAPVHKVSKSP 91
F K+++ P
Sbjct: 79 FTRPSKLTRQP 89
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 51/69 (73%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP G+
Sbjct: 4 FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 63
Query: 81 FAPVHKVSK 89
F K ++
Sbjct: 64 FTRPSKXTR 72
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C P++G+FA
Sbjct: 27 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFA 86
Query: 83 PVHKVSKSPMSG 94
P+ K+SK SG
Sbjct: 87 PLSKISKLKDSG 98
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C P+ GLFA
Sbjct: 19 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 78
Query: 83 PVHKVSKS 90
V K+SK+
Sbjct: 79 SVSKISKA 86
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 45/67 (67%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C PR+G+FA
Sbjct: 13 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 72
Query: 83 PVHKVSK 89
P +V +
Sbjct: 73 PPSRVQR 79
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C PR G+FA
Sbjct: 28 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFA 87
Query: 83 P---VHKVSKSPMSG 94
P + ++ P SG
Sbjct: 88 PASRIQRIGSGPSSG 102
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 45/73 (61%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F IGDRV +G + G + F GET FA G WAGV LD P G N+G YF+C+ + G+
Sbjct: 32 FHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 91
Query: 81 FAPVHKVSKSPMS 93
FAP K+S P +
Sbjct: 92 FAPPQKISHIPEN 104
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 9 DSSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 64
+S ++ E + ++G+R V VG + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 3 ESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 62
Query: 65 QVGQARYFQCEPRFGLF 81
V RYF C+P++G F
Sbjct: 63 SVAGVRYFDCDPKYGGF 79
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 10 SSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 65
S ++ E + ++G+R V VG + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 1 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGS 60
Query: 66 VGQARYFQCEPRFGLF 81
V RYF C+P++G F
Sbjct: 61 VAGVRYFDCDPKYGGF 76
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin-
Like Protein Kif13b
Length = 100
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 10 SSQVLTEDTDS-------FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKN 62
S Q L D++ G+ V VG K+G + ++G F G W GV LD P GKN
Sbjct: 6 SGQALASDSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKN 65
Query: 63 DGQVGQARYFQCEPRFGLF---APVHKVSKSPMSG 94
DG +G +YF+C P +GL + V + + P SG
Sbjct: 66 DGSIGGKQYFRCNPGYGLLVRPSRVRRATSGPSSG 100
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse
Tubulin Specific Chaperone B
Length = 113
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 9 DSSQVLTED---TDSFIIGDRVYVGGT----KSGRIAFIGETKFAPGDWAGVVLDDPVGK 61
+++Q L+E+ + +G R V + G + ++G T F PG W GV D+P+GK
Sbjct: 18 EAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGK 77
Query: 62 NDGQVGQARYFQCEPRFGLF 81
NDG V RYF+C+ ++G F
Sbjct: 78 NDGSVNGKRYFECQAKYGAF 97
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Dynactin 1
Length = 112
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 36 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 95
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 15 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 74
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
Length = 71
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 3 VGSRVEVIGKGHRGTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 62
Query: 82 A 82
Sbjct: 63 V 63
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 6 KAYDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 65
K ++ SQVL ++ + ++G T FA G W G+ L GKNDG
Sbjct: 12 KLHEGSQVLLTSSNEMAT-------------VRYVGPTDFASGIWLGLELRSAKGKNDGA 58
Query: 66 VGQARYFQCEPRFGLFAPVHKVSKSPMSG 94
VG RYF C+P +G+ +V+ +SG
Sbjct: 59 VGDKRYFTCKPNYGVLVRPSRVTYRGISG 87
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 19 DSFIIGDRVYV-GGTKSGRIAFIGET-KFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEP 76
++ +GDR G + G + F+G PG W GV D+PVGK DG V R FQC+P
Sbjct: 4 ETIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQP 63
Query: 77 RFGLF 81
+G F
Sbjct: 64 NYGGF 68
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 22 IIGDRVYVGGTKSGRIAFIGETKFAPG 48
++ D VY G + G IA I E F PG
Sbjct: 289 VLTDPVYEGKSMQGLIALIKEDYFKPG 315
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 22 IIGDRVYVGGTKSGRIAFIGETKFAPG 48
++ D VY G + G IA I E F PG
Sbjct: 289 VLTDPVYEGKSMQGLIALIKEDYFKPG 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,827,565
Number of Sequences: 62578
Number of extensions: 151085
Number of successful extensions: 252
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 30
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)