BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9801
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VJE5|CL190_DROME Restin homolog OS=Drosophila melanogaster GN=CLIP-190 PE=1 SV=1
Length = 1690
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 50/88 (56%), Positives = 70/88 (79%)
Query: 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
+SS VLT +T+ FIIG RV++GGT+ G+IAFIG+T FA G+WAGVVLD+P GKNDG V
Sbjct: 111 NSSAVLTANTEQFIIGQRVWLGGTRPGQIAFIGDTHFAAGEWAGVVLDEPNGKNDGCVSG 170
Query: 69 ARYFQCEPRFGLFAPVHKVSKSPMSGTK 96
RYFQCEP+ G+F+ + +++ P++G +
Sbjct: 171 KRYFQCEPKRGIFSRLTRLTTYPLAGAQ 198
Score = 110 bits (274), Expect = 4e-24, Method: Composition-based stats.
Identities = 55/114 (48%), Positives = 74/114 (64%), Gaps = 12/114 (10%)
Query: 23 IGDRVYVG---GTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFG 79
+GDRV V G++ G + ++GET+FAPG+W GV LD+P GKNDG V RYF+C+P++G
Sbjct: 239 VGDRVIVSSGFGSRPGILRYLGETQFAPGNWCGVELDEPSGKNDGTVDDIRYFECKPKYG 298
Query: 80 LFAPVHKVSKSPMSGTKRLSCAVHHGLRRSGSRESITS-NFSNVTTTSVKSNLR 132
+F P+ KVS SP S RLS R+GSRES+TS N T+ S +R
Sbjct: 299 VFVPIAKVSLSPSSKKTRLS--------RTGSRESLTSIGTMNSIATTATSRMR 344
>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus
GN=CLIP1 PE=2 SV=1
Length = 1433
Score = 112 bits (281), Expect = 6e-25, Method: Composition-based stats.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+PR+GLFA
Sbjct: 217 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPRYGLFA 276
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 277 PVHKVTK 283
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/75 (56%), Positives = 55/75 (73%)
Query: 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRF 78
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 57 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLR 116
Query: 79 GLFAPVHKVSKSPMS 93
G+F K+S+ ++
Sbjct: 117 GIFTRPSKLSRKVLT 131
>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1
PE=1 SV=2
Length = 1438
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/67 (68%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 273
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 274 PVHKVTK 280
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V
Sbjct: 47 SSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGV 106
Query: 70 RYFQCEPRFGLFAPVHKVSK 89
RYFQCEP G+F K+++
Sbjct: 107 RYFQCEPLKGIFTRPSKLTR 126
>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
PE=1 SV=1
Length = 1391
Score = 110 bits (274), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/67 (67%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 213 VGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 272
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 273 PVHKVTK 279
Score = 102 bits (255), Expect = 5e-22, Method: Composition-based stats.
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V
Sbjct: 47 SSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGV 106
Query: 70 RYFQCEPRFGLFAPVHKVSK 89
RYFQCEP G+F K+++
Sbjct: 107 RYFQCEPLKGIFTRPSKLTR 126
>sp|O55156|CLIP2_RAT CAP-Gly domain-containing linker protein 2 OS=Rattus norvegicus
GN=Clip2 PE=1 SV=1
Length = 1046
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 55/102 (53%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
DS V D D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V
Sbjct: 209 DSGSVKRGDKD-LHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAG 267
Query: 69 ARYFQCEPRFGLFAPVHKV------SKSPMSG--TKRLSCAV 102
RYFQC P+FGLFAP+HKV S SP TKR++ V
Sbjct: 268 TRYFQCPPKFGLFAPIHKVIRIGFPSTSPAKAKKTKRMAMGV 309
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C G+
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGLRYFECPALQGI 139
Query: 81 FAPVHKVSKSPMS 93
F K+++ P +
Sbjct: 140 FTRPSKLTRQPAA 152
>sp|Q9Z0H8|CLIP2_MOUSE CAP-Gly domain-containing linker protein 2 OS=Mus musculus GN=Clip2
PE=1 SV=2
Length = 1047
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 55/102 (53%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
DS V D D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V
Sbjct: 209 DSGSVKRGDKD-LHLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAG 267
Query: 69 ARYFQCEPRFGLFAPVHKV------SKSPMSG--TKRLSCAV 102
RYFQC P+FGLFAP+HKV S SP TKR++ V
Sbjct: 268 TRYFQCPPKFGLFAPIHKVIRIGFPSTSPAKAKKTKRMAMGV 309
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C G+
Sbjct: 80 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGI 139
Query: 81 FAPVHKVSKSPMS 93
F K+++ P +
Sbjct: 140 FTRPSKLTRQPTA 152
>sp|Q9UDT6|CLIP2_HUMAN CAP-Gly domain-containing linker protein 2 OS=Homo sapiens GN=CLIP2
PE=1 SV=1
Length = 1046
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/102 (52%), Positives = 67/102 (65%), Gaps = 9/102 (8%)
Query: 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
DS V + D +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V
Sbjct: 208 DSGSVKRGEKD-LRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAG 266
Query: 69 ARYFQCEPRFGLFAPVHKV------SKSPMSG--TKRLSCAV 102
RYFQC P+FGLFAP+HKV S SP TKR++ V
Sbjct: 267 TRYFQCPPKFGLFAPIHKVIRIGFPSTSPAKAKKTKRMAMGV 308
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 54/73 (73%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG RYF+C G+
Sbjct: 79 FVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGI 138
Query: 81 FAPVHKVSKSPMS 93
F K+++ P +
Sbjct: 139 FTRPSKLTRQPTA 151
>sp|Q8N3C7|CLIP4_HUMAN CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4
PE=1 SV=1
Length = 705
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 52/68 (76%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C P++G+FA
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFA 344
Query: 83 PVHKVSKS 90
P+ K+SK+
Sbjct: 345 PLSKISKA 352
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C PR+G+FA
Sbjct: 487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 546
Query: 83 P---VHKVSKSPMSGTKRLSCAVHH---GLRRSGSRESITS 117
P V +V+ S + ++ S +H G RRS S S +S
Sbjct: 547 PPSRVQRVTDSLDTLSEISSNKQNHSYPGFRRSFSTTSASS 587
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 6 KAYDSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 65
K ++ SQVL ++ G + ++G T FA G W G+ L GKNDG
Sbjct: 622 KLHEGSQVLLTSSNEM-------------GTVRYVGPTDFASGIWLGLELRSAKGKNDGS 668
Query: 66 VGQARYFQCEPRFGLFAPVHKVSKSPMSGTK 96
VG RYF C+P G+ +V+ ++G+K
Sbjct: 669 VGDKRYFTCKPNHGVLVRPSRVTYRGINGSK 699
>sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4 OS=Mus musculus GN=Clip4
PE=1 SV=1
Length = 704
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C P++G+FA
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFA 344
Query: 83 PVHKVSK 89
P+ K+SK
Sbjct: 345 PLSKISK 351
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 6/102 (5%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C PR+G+FA
Sbjct: 486 LGERVLVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 545
Query: 83 P---VHKVSKSPMSGTKRLSCAVHH---GLRRSGSRESITSN 118
P V ++S S + ++ S +H G RRS S S +S
Sbjct: 546 PPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTSASSQ 587
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 37 IAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTK 96
+ ++G T FA G W G+ L GKNDG VG RYF C+P +G+ +V+ +SG+K
Sbjct: 639 VRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGISGSK 698
Query: 97 RL 98
+
Sbjct: 699 LI 700
>sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 OS=Rattus norvegicus
GN=Clip4 PE=2 SV=1
Length = 599
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C P++G+FA
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFA 344
Query: 83 PVHKVSK 89
P+ K++K
Sbjct: 345 PLSKITK 351
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C PR+G+FA
Sbjct: 487 LGERVLVVGQRVGTIKFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFA 546
Query: 83 P---VHKVSKSPMSGTKRLSCAVHH---GLRRSGSRESITS 117
P V ++S S + ++ S +H G RRS S S +S
Sbjct: 547 PPSRVQRLSDSLDTLSEISSNKQNHSYPGFRRSFSTTSASS 587
>sp|Q5U243|CLIP3_XENLA CAP-Gly domain-containing linker protein 3 OS=Xenopus laevis
GN=clip3 PE=2 SV=1
Length = 534
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 49/69 (71%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDR+ + K+G + F G T+FA G W GV LD+P GKNDG VG RYF C P+ G+FA
Sbjct: 286 LGDRILLDAEKAGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKQGIFA 345
Query: 83 PVHKVSKSP 91
PV K+SK+P
Sbjct: 346 PVSKISKAP 354
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGD+V V G K G + F G+T FAPG W G+ L+ P GK+DG V RYF C + G+FA
Sbjct: 405 IGDQVLVAGQKQGIVRFYGKTDFAPGYWFGIELEKPTGKHDGSVFGVRYFTCSAKNGVFA 464
Query: 83 PVHKVSKSPMSGTK 96
P +V + M G K
Sbjct: 465 PPSRVQR--MGGPK 476
>sp|B9EHT4|CLIP3_MOUSE CAP-Gly domain-containing linker protein 3 OS=Mus musculus GN=Clip3
PE=1 SV=1
Length = 547
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C P+ GLFA
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 83 PVHKVSKS 90
V KVSK+
Sbjct: 356 SVSKVSKA 363
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C PR G+FA
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFA 477
Query: 83 PVHKVSK 89
P ++ +
Sbjct: 478 PASRIQR 484
>sp|Q96DZ5|CLIP3_HUMAN CAP-Gly domain-containing linker protein 3 OS=Homo sapiens GN=CLIP3
PE=1 SV=3
Length = 547
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C P+ GLFA
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 83 PVHKVSKS 90
V K+SK+
Sbjct: 356 SVSKISKA 363
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C PR G+FA
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFA 477
Query: 83 PVHKVSK 89
P ++ +
Sbjct: 478 PASRIQR 484
>sp|Q5R686|CLIP3_PONAB CAP-Gly domain-containing linker protein 3 OS=Pongo abelii GN=CLIP3
PE=2 SV=1
Length = 547
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF C P+ GLFA
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFA 355
Query: 83 PVHKVSKS 90
V K+SK+
Sbjct: 356 SVSKISKA 363
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V RYF C PR G+FA
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFA 477
Query: 83 PVHKVSK 89
P ++ +
Sbjct: 478 PASRIQR 484
>sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1
Length = 3117
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 44/71 (61%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F IGDRV +G + G + F GET FA G WAGV LD P G N+G YF+C+ + G+
Sbjct: 2497 FHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGI 2556
Query: 81 FAPVHKVSKSP 91
FAP K+S P
Sbjct: 2557 FAPPQKISHIP 2567
>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3
PE=1 SV=1
Length = 229
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 9 DSSQVLTEDTDSFIIGDR--VYVGG--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 64
+S ++ E + ++G+R V VG + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 134 ESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 193
Query: 65 QVGQARYFQCEPRFGLFA-PVH-KVSKSP 91
V RYF C+P++G F PV KV P
Sbjct: 194 SVAGVRYFDCDPKYGGFVRPVDVKVGDFP 222
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1
Length = 1826
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 24 GDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAP 83
G+ V VG K+G + ++G F G W GV LD P GKNDG +G +YF+C P +GL
Sbjct: 1704 GEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVR 1763
Query: 84 VHKVSKSPMSGTKRLSCAVHHG---LRRSGSRESITSNFSNVTTTSVKSN 130
+V ++ +R S + G RRS + +N +++T K++
Sbjct: 1764 PSRVRRA-TGPVRRRSTGLRLGAPEARRSATLSGSATNLASLTAALAKAD 1812
>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ro-3 PE=3 SV=3
Length = 1367
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 34 SGRIAFI---GETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
SGR AF+ GET FAPG W G+ LD+P GKNDG V RYF CE +G+F
Sbjct: 18 SGRTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMGYGMF 68
>sp|Q6PCJ1|DCTN1_XENLA Dynactin subunit 1 OS=Xenopus laevis GN=dctn1 PE=2 SV=1
Length = 1232
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LDD GKNDG V RYF CE G+F
Sbjct: 12 VGSRVEVIGKGYRGTVAYVGATLFATGKWVGVILDDSKGKNDGTVQGRRYFTCEENHGIF 71
>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2
Length = 1265
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 23 IGDRVYVGGTKS-GRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV + G G +A++G T FA G W GVVLD+P GKN G + +YFQC+ G+F
Sbjct: 8 VGARVELTGKDLLGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDENCGMF 67
>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb
PE=3 SV=1
Length = 270
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 35 GRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
G++ ++G +F+ G W GV LD P+GKNDG V +YFQC P++G FA
Sbjct: 208 GKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFA 255
>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2
Length = 244
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 9 DSSQVLTED---TDSFIIGDRVYVGG----TKSGRIAFIGETKFAPGDWAGVVLDDPVGK 61
+++Q L+E+ + +G R V + G + ++G T F PG W GV D+P+GK
Sbjct: 144 EAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGK 203
Query: 62 NDGQVGQARYFQCEPRFGLF 81
NDG V RYF+C+ ++G F
Sbjct: 204 NDGSVNGKRYFECQAKYGAF 223
>sp|P28023|DCTN1_RAT Dynactin subunit 1 OS=Rattus norvegicus GN=Dctn1 PE=2 SV=2
Length = 1280
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
>sp|O08788|DCTN1_MOUSE Dynactin subunit 1 OS=Mus musculus GN=Dctn1 PE=1 SV=3
Length = 1281
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
>sp|Q14203|DCTN1_HUMAN Dynactin subunit 1 OS=Homo sapiens GN=DCTN1 PE=1 SV=3
Length = 1278
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 88
>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2
Length = 244
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 33 KSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+ G + ++G T F PG W GV D+P+GKNDG V RYF+C+ ++G F
Sbjct: 175 RRGTVMYVGLTDFKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAF 223
>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1
Length = 244
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 33 KSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
+ G + ++G T F PG W G+ D+P+GKNDG V RYF+C+ ++G F
Sbjct: 175 RRGTVMYVGLTDFKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFV 224
>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2
Length = 1224
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T A G W GV+LD+ GKNDG V +YF CE G+F
Sbjct: 30 VGSRVEVIGKGHRGTVAYVGATLXATGKWVGVILDEAKGKNDGTVQGRKYFTCEENHGIF 89
>sp|P33420|NIP80_YEAST Protein NIP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NIP100 PE=1 SV=2
Length = 868
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 25 DRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPR------- 77
D V V K GR+ FIGET+FA G W G+ LD P+GKNDG RYF + +
Sbjct: 19 DTVLVNEMK-GRVKFIGETQFAKGIWYGIELDKPLGKNDGSANGIRYFDIDLKKANSNGG 77
Query: 78 -FGLF 81
+GLF
Sbjct: 78 YYGLF 82
>sp|O42667|SSM4_SCHPO Microtubule-associated protein ssm4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssm4 PE=1 SV=1
Length = 670
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+GD V + G + G + F G T F G W GV L + GKNDG V RYF CE G+F
Sbjct: 6 VGDEVLIRG-ELGIVRFAGSTDFESGIWLGVELLNGKGKNDGSVKGKRYFSCEKGKGIF 63
>sp|Q10235|ALP11_SCHPO Cell polarity protein alp11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=alp11 PE=1 SV=1
Length = 234
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGD--WAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
+ R G + G I +IG D W GV D+PVGKNDG V RYF + + G
Sbjct: 154 LNSRCCAAGERYGTIRYIGLVPEINNDNLWVGVEFDEPVGKNDGTVSGKRYFNAKNKHGS 213
Query: 81 F 81
F
Sbjct: 214 F 214
>sp|P11709|BIK1_YEAST Nuclear fusion protein BIK1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BIK1 PE=1 SV=1
Length = 440
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCE-PRFGLF 81
IG + + G++ ++G G +AGV L +GKNDG +YFQ E P+ GLF
Sbjct: 8 IGCFIQIPNLGRGQLKYVGPVDTKAGMFAGVDLLANIGKNDGSFMGKKYFQTEYPQSGLF 67
Query: 82 APVHKVS----KSPMSGTKRLSCAVHHGLRRSGSRESITSNFS 120
+ KV+ K+ +S T R + + ++ S +T+ FS
Sbjct: 68 IQLQKVASLIEKASISQTSRRTTMEPLSIPKNRSIVRLTNQFS 110
>sp|P34531|YM92_CAEEL Uncharacterized protein M01A8.2 OS=Caenorhabditis elegans
GN=M01A8.2 PE=4 SV=4
Length = 937
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IG V V G + ++G G + G+ L +P GK+DG YF P G+FA
Sbjct: 21 IGRLVDVVNVGKGFLRYVGPIHGKDGMFCGIELLEPNGKHDGTFQGVSYFIATPYHGIFA 80
Query: 83 PVHKVS 88
P+ +V+
Sbjct: 81 PIFRVT 86
>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1
Length = 527
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 11 SQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQA 69
S LT D +IG RV V G + + F G G W GV D+P GK+DG
Sbjct: 2 SDTLTAD----VIGQRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGT 56
Query: 70 RYFQC-EPRFGLFAPVHKVS 88
YFQC P G F +KV+
Sbjct: 57 VYFQCRHPTGGSFIRPNKVN 76
>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce
PE=3 SV=1
Length = 525
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC 74
F IG+RV G I + G+ G+W G+ DDP GK+ G V +YF+C
Sbjct: 13 FYIGERVKGDDGSVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKC 67
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC-EPRFGL 80
+G RV G + G + ++G G W GV D P GK+DG RYF C P G
Sbjct: 7 VGRRVCCDGER-GTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRHPTGGS 65
Query: 81 FAPVHKVS 88
F K S
Sbjct: 66 FVRPQKAS 73
>sp|B8GQ45|SPEE_THISH Spermidine synthase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=speE PE=3 SV=1
Length = 283
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 46 APGDWAGVVLD--DPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTKRLSCAVH 103
APG +++D DPVG +G A Y C G + + S+SP+ T + +H
Sbjct: 148 APGSLDVIIIDSTDPVGPAEGLFSTAFYRDCIKALGPGGLLVQQSESPLLHTDSIIKPMH 207
Query: 104 HGLRRSGSRESITSNFSNVTTTS 126
LR +G +++ +F + S
Sbjct: 208 DSLRAAGFLDTLALHFPQCSYPS 230
>sp|Q5WCI9|FOLD_BACSK Bifunctional protein FolD OS=Bacillus clausii (strain KSM-K16)
GN=folD PE=3 SV=1
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 37 IAFIGETKFAPGDW---AGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPV 84
+A +G+ F G+W VVLD G N G +G Y C R PV
Sbjct: 207 VAAVGKPNFIQGEWIKSGAVVLD--AGYNKGNIGDCEYDGCAQRASAITPV 255
>sp|Q9CJR1|FOLD_PASMU Bifunctional protein FolD OS=Pasteurella multocida (strain Pm70)
GN=folD PE=3 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 37 IAFIGETKFAPGDW---AGVVLDDPVGKNDGQ-VGQARYFQCEPRFGLFAPV 84
+ +G+ KF PGDW +V+D + + +G+ VG Y + G PV
Sbjct: 207 VVAVGKPKFIPGDWIKAGAIVIDVGINRQEGKLVGDVEYDVALEKAGYITPV 258
>sp|Q8G5P4|GUAA_BIFLO GMP synthase [glutamine-hydrolyzing] OS=Bifidobacterium longum
(strain NCC 2705) GN=guaA PE=3 SV=1
Length = 535
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 39 FIGETKFAPGDW-AGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTKR 97
F+ P DW A +++D V K QVG A C G+ + V G +
Sbjct: 200 FLHRCAALPNDWDASSIIEDQVKKIREQVGDAEVI-CGLSGGVDSAVAAALVHKAIGDQL 258
Query: 98 LSCAVHHGLRRSGSRESITSNFSNVT 123
V HGL R G E + +F T
Sbjct: 259 TCVFVDHGLLRKGEVEQVKHDFVAAT 284
>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1
Length = 522
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 37 IAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC-EPRFGLFAPVHKVS 88
+ ++G PG W GV D+ + GK++G +YF C P G F + K +
Sbjct: 23 VRYVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRLKKAN 76
>sp|Q9L0H2|GUAA_STRCO GMP synthase [glutamine-hydrolyzing] OS=Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145) GN=guaA PE=3 SV=1
Length = 526
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 49 DWA-GVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTKRLSCAVHHGLR 107
DW G V+++ V QVG R C G+ + V G++ V HGL
Sbjct: 204 DWTTGNVIEEQVAAIRAQVGDRRAI-CGLSGGVDSAVAAALVQKAIGSQLTCVYVDHGLM 262
Query: 108 RSGSRESITSNFSNVTTTSVK 128
R G E + +F T +K
Sbjct: 263 RKGETEQVEKDFVAATGVQLK 283
>sp|Q5WJI0|GUAA_BACSK GMP synthase [glutamine-hydrolyzing] OS=Bacillus clausii (strain
KSM-K16) GN=guaA PE=3 SV=1
Length = 515
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 46 APGDWAGV-VLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTKRLSCAVHH 104
A GDW+ +++ + K QVG R+ C G+ + V V G + + H
Sbjct: 195 AKGDWSMENFIEEEIKKIREQVGD-RHVLCALSGGVDSSVVAVLIHKAIGDQLTCMFIDH 253
Query: 105 GLRRSGSRESITSNFSN 121
GL R G ES+ F+
Sbjct: 254 GLLRKGEAESVMETFTQ 270
>sp|Q47LQ0|GUAA_THEFY GMP synthase [glutamine-hydrolyzing] OS=Thermobifida fusca (strain
YX) GN=guaA PE=3 SV=1
Length = 528
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 32 TKSGRIA---FIGETKFAPGDWAGV-VLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKV 87
T+ GR F+ E W V +++D V + Q+G R C G+ + V
Sbjct: 183 TEHGRAVLQHFLYEAAGCRPTWTMVNIVEDQVARIRAQIGSKRAI-CGLSGGVDSAVAAA 241
Query: 88 SKSPMSGTKRLSCA-VHHGLRRSGSRESITSNFSNVTTTSVK 128
G RL+C V HGL R G E + +F T S+K
Sbjct: 242 LVQRAIG-DRLTCVFVDHGLLRQGEAEQVEKDFVAATGASLK 282
>sp|Q6A6X1|GUAA_PROAC GMP synthase [glutamine-hydrolyzing] OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=guaA PE=3 SV=1
Length = 530
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 16 EDTDSFIIGDRVY--VGGTKSGRIA---FIGETKFAPGDW-AGVVLDDPVGKNDGQVGQA 69
ED + ++G + + V T+SG+ F+ + DW A ++ D + + GQVG
Sbjct: 172 EDVERRLVGVQWHPEVHHTESGQTVLEHFLFDIAGCRPDWNASSIVGDQIAQIRGQVGDR 231
Query: 70 RYFQCEPRFGLFAPVHKVSKSPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVT 123
R C G+ + V G + V HGL R G E + ++F T
Sbjct: 232 RVI-CGLSGGVDSAVAAALVQRAVGDQLTCVFVDHGLLRQGEAEQVKNDFVAAT 284
>sp|B4RV70|FOLD_ALTMD Bifunctional protein FolD OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=folD1 PE=3 SV=1
Length = 284
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 37 IAFIGETKFAPGDWA---GVVLDDPVGK-NDGQ-VGQARYFQCEPRFGLFAPV 84
+ +G+ F PGDW +V+D + + NDG VG + + + R G PV
Sbjct: 207 VVAVGKPNFIPGDWVKPGAIVIDVGINRVNDGSLVGDVDFDKAKERAGWITPV 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,913,277
Number of Sequences: 539616
Number of extensions: 2077842
Number of successful extensions: 3660
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3605
Number of HSP's gapped (non-prelim): 63
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)