Query psy9801
Match_columns 132
No_of_seqs 154 out of 950
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:04:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cp6_A Restin; microtubule bin 100.0 3.5E-32 1.2E-36 210.5 13.1 111 17-127 35-155 (172)
2 2cp2_A CLIP-115, KIAA0291; mic 100.0 1.4E-31 4.8E-36 190.0 9.4 83 11-93 9-91 (95)
3 3rdv_A CAP-Gly domain-containi 100.0 1.6E-31 5.5E-36 181.1 9.1 70 20-89 2-71 (72)
4 2cp3_A CLIP-115, KIAA0291; mic 100.0 3E-31 1E-35 184.5 10.5 76 17-92 4-79 (84)
5 2cp0_A Clipr-59 protein, clipr 100.0 3.9E-31 1.4E-35 187.7 10.4 77 18-94 14-90 (95)
6 1whh_A Clipr-59; microtubule b 100.0 4.2E-31 1.4E-35 189.8 10.1 78 16-93 21-98 (102)
7 1whj_A 1700024K14RIK, riken cD 100.0 7.3E-31 2.5E-35 188.5 10.5 77 18-94 22-98 (102)
8 1txq_A Dynactin 1; protein com 100.0 6.8E-31 2.3E-35 185.7 9.9 79 17-95 9-88 (93)
9 2e3h_A Restin; CAP-Gly, cytopl 100.0 8.8E-31 3E-35 184.3 10.3 75 20-94 1-75 (90)
10 2e3i_A Restin; CAP-Gly, cytopl 100.0 7.7E-31 2.6E-35 183.2 9.8 74 19-92 1-74 (86)
11 1whk_A 1700024K14RIK, riken cD 100.0 5.5E-31 1.9E-35 185.6 8.6 79 16-94 8-87 (91)
12 2z0w_A CAP-Gly domain-containi 100.0 4.2E-31 1.4E-35 187.8 6.8 77 17-93 7-83 (96)
13 4b6m_A Tubulin-specific chaper 100.0 2.8E-30 9.5E-35 180.0 10.3 74 18-91 3-78 (84)
14 2coz_A CAP350, centrosome-asso 100.0 2.7E-30 9.1E-35 190.7 9.8 83 11-93 22-104 (122)
15 2coy_A Dynactin-1; microtubule 100.0 5.9E-30 2E-34 186.4 11.0 77 18-94 31-108 (112)
16 2cow_A Kinesin-like protein KI 100.0 4.5E-30 1.5E-34 183.8 10.1 77 16-92 19-95 (100)
17 1whl_A Cylindromatosis tumor s 100.0 5.7E-30 1.9E-34 181.3 10.1 76 17-92 4-90 (95)
18 1lpl_A Hypothetical 25.4 kDa p 100.0 1.3E-29 4.5E-34 179.7 10.1 74 18-91 9-86 (95)
19 2cp5_A Restin; microtubule bin 100.0 1.7E-29 5.7E-34 190.4 10.6 76 17-92 61-136 (141)
20 1ixd_A Cylindromatosis tumour- 100.0 1.6E-29 5.4E-34 182.0 9.7 76 15-90 12-90 (104)
21 1whg_A Tubulin specific chaper 100.0 6.7E-29 2.3E-33 181.0 9.3 74 18-91 30-107 (113)
22 1whm_A Cylindromatosis tumor s 99.9 1.3E-26 4.4E-31 163.8 9.3 73 17-89 6-84 (92)
23 3pie_A 5'->3' exoribonuclease 66.5 8.6 0.0003 36.9 5.8 80 3-92 1050-1137(1155)
24 3udc_A Small-conductance mecha 53.4 11 0.00038 29.6 3.5 25 18-43 126-150 (285)
25 1at0_A 17-hedgehog; developmen 50.4 21 0.00072 25.3 4.3 57 18-85 18-79 (145)
26 2vv5_A MSCS, small-conductance 49.0 12 0.0004 29.5 3.0 25 18-43 127-151 (286)
27 2ivw_A PILP pilot protein; lip 42.0 59 0.002 22.9 5.5 64 35-98 25-103 (113)
28 1hbn_C Methyl-coenzyme M reduc 41.4 5.9 0.0002 31.7 0.1 45 9-61 156-202 (248)
29 1e6v_C Methyl-coenzyme M reduc 39.8 5.8 0.0002 31.8 -0.1 45 9-61 161-207 (258)
30 3lnn_A Membrane fusion protein 39.5 1.3E+02 0.0045 23.3 8.5 74 16-90 217-298 (359)
31 2e6z_A Transcription elongatio 38.6 32 0.0011 21.0 3.3 24 17-40 4-31 (59)
32 1e6y_C Methyl-coenzyme M reduc 37.0 7.9 0.00027 30.9 0.2 43 9-61 157-201 (247)
33 3cnr_A Type IV fimbriae assemb 34.5 51 0.0017 23.0 4.2 38 18-57 39-89 (117)
34 2y35_A LD22664P; hydrolase-DNA 31.3 71 0.0024 30.6 5.7 64 18-88 1056-1137(1140)
35 3hht_B NitrIle hydratase beta 30.3 19 0.00065 28.4 1.4 15 16-30 137-151 (229)
36 1ugp_B NitrIle hydratase beta 28.2 24 0.00081 27.7 1.7 21 11-31 129-149 (226)
37 3mlq_E Transcription-repair co 27.9 40 0.0014 21.5 2.5 53 20-91 2-56 (71)
38 2zzd_A Thiocyanate hydrolase s 27.5 15 0.00051 26.7 0.3 15 17-31 33-47 (126)
39 3fpp_A Macrolide-specific effl 26.6 75 0.0026 24.5 4.3 72 17-89 203-286 (341)
40 1nz9_A Transcription antitermi 26.5 93 0.0032 18.4 3.9 22 19-40 3-28 (58)
41 3qyh_B CO-type nitrIle hydrata 26.2 20 0.00068 28.0 0.9 15 16-30 126-140 (219)
42 3sqg_C Methyl-coenzyme M reduc 24.7 6.9 0.00024 31.7 -2.1 42 9-59 157-198 (279)
43 3a8g_B NitrIle hydratase subun 20.2 21 0.00071 27.8 -0.1 28 17-44 119-162 (212)
No 1
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.98 E-value=3.5e-32 Score=210.52 Aligned_cols=111 Identities=50% Similarity=0.868 Sum_probs=91.7
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCCCC
Q psy9801 17 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGTK 96 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~~~ 96 (132)
...+|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....-+..+
T Consensus 35 ~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~~~ 114 (172)
T 2cp6_A 35 GERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTT 114 (172)
T ss_dssp CSSCCCSSCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSCC
T ss_pred CCccCccCCEEEECCCceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCCCC
Confidence 45689999999999888999999999999999999999999999999999999999999999999999999986433211
Q ss_pred c----------ccceeeCCCCCCCCcccccccccceeeeee
Q psy9801 97 R----------LSCAVHHGLRRSGSRESITSNFSNVTTTSV 127 (132)
Q Consensus 97 ~----------~~~~~~~~~~r~~~~~~~~~~~~~~~~~s~ 127 (132)
+ ....+++...|++|.++.+|-++..|+.+.
T Consensus 115 p~~~~~~~~~~~~~~~~~~~~rs~s~~s~ss~~s~~ss~~~ 155 (172)
T 2cp6_A 115 PAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSS 155 (172)
T ss_dssp SCCCCCCSSSSCCCCCCCSCSSCSSCCCSSCCCCCCCCCCC
T ss_pred ccccccccccccccccccccccCCCcCcccccccccccCCC
Confidence 1 122345677898888887776666555443
No 2
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.97 E-value=1.4e-31 Score=190.04 Aligned_cols=83 Identities=49% Similarity=0.996 Sum_probs=76.1
Q ss_pred ceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeC
Q psy9801 11 SQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKS 90 (132)
Q Consensus 11 ~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~ 90 (132)
+....+....|+|||||.|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.
T Consensus 9 s~~~~~~~~~~~vG~rV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 9 AEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ 88 (95)
T ss_dssp SCCCBSSCCSCCTTCEEEGGGSCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred chhhhhhhhcCcCCCEEEECCceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence 33344567789999999999878999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy9801 91 PMS 93 (132)
Q Consensus 91 ~~~ 93 (132)
+..
T Consensus 89 p~~ 91 (95)
T 2cp2_A 89 PSG 91 (95)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 3
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.97 E-value=1.6e-31 Score=181.14 Aligned_cols=70 Identities=57% Similarity=1.153 Sum_probs=67.7
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeee
Q psy9801 20 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSK 89 (132)
Q Consensus 20 ~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~ 89 (132)
+|+||+||+|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+
T Consensus 2 ~~~vG~rv~v~g~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvsr 71 (72)
T 3rdv_A 2 DFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR 71 (72)
T ss_dssp CCCTTCEEEETTTEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEEC
T ss_pred CcccCCEEEECCCCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHccc
Confidence 6899999999987899999999999999999999999999999999999999999999999999999975
No 4
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=3e-31 Score=184.50 Aligned_cols=76 Identities=57% Similarity=1.123 Sum_probs=72.2
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCC
Q psy9801 17 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPM 92 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~ 92 (132)
....|+|||||+|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.++..
T Consensus 4 ~~~~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~~ 79 (84)
T 2cp3_A 4 GSSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIGS 79 (84)
T ss_dssp SSCSCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECCC
T ss_pred cccccccCCEEEECCCCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEccc
Confidence 3567999999999987899999999999999999999999999999999999999999999999999999999875
No 5
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=3.9e-31 Score=187.71 Aligned_cols=77 Identities=51% Similarity=0.939 Sum_probs=73.0
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCC
Q psy9801 18 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSG 94 (132)
Q Consensus 18 ~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~ 94 (132)
..+|+|||||+|.+..+|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.++..
T Consensus 14 ~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~~~~~ 90 (95)
T 2cp0_A 14 ALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKAVDAS 90 (95)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEECSCCC
T ss_pred ccCCCCCCEEEECCCCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecCCCCC
Confidence 45699999999998789999999999999999999999999999999999999999999999999999999998754
No 6
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.97 E-value=4.2e-31 Score=189.75 Aligned_cols=78 Identities=44% Similarity=0.872 Sum_probs=73.5
Q ss_pred cCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCC
Q psy9801 16 EDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMS 93 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~ 93 (132)
.+...|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.++.+.
T Consensus 21 ~~~~~~~VG~RV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~ 98 (102)
T 1whh_A 21 REGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSG 98 (102)
T ss_dssp SSCCSSCTTSEEEETTTEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSC
T ss_pred cccccCcCCCEEEECCCcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCC
Confidence 346789999999999878999999999999999999999999999999999999999999999999999999998763
No 7
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.97 E-value=7.3e-31 Score=188.51 Aligned_cols=77 Identities=49% Similarity=1.023 Sum_probs=73.1
Q ss_pred CCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCC
Q psy9801 18 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSG 94 (132)
Q Consensus 18 ~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~ 94 (132)
..+|+|||||+|.+...|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.+++.
T Consensus 22 ~~~~~vG~RV~V~g~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~ 98 (102)
T 1whj_A 22 SLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSG 98 (102)
T ss_dssp HHTCCTTCEEEETTTEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCC
T ss_pred hhcCcCCCEEEECCCCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCC
Confidence 34699999999998789999999999999999999999999999999999999999999999999999999998754
No 8
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.97 E-value=6.8e-31 Score=185.67 Aligned_cols=79 Identities=35% Similarity=0.716 Sum_probs=70.1
Q ss_pred CCCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCCC
Q psy9801 17 DTDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSGT 95 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g-~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~~ 95 (132)
....|+|||||.|.+ ..+|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|....+...
T Consensus 9 ~~~~~~vG~rv~v~~~~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~~~ 88 (93)
T 1txq_A 9 SARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDGAD 88 (93)
T ss_dssp --CCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEECC----
T ss_pred ccccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEccCCCC
Confidence 356799999999975 4799999999999999999999999999999999999999999999999999999999887543
No 9
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.97 E-value=8.8e-31 Score=184.28 Aligned_cols=75 Identities=61% Similarity=1.176 Sum_probs=70.8
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCC
Q psy9801 20 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSG 94 (132)
Q Consensus 20 ~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~ 94 (132)
+|+|||||.|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....-+.
T Consensus 1 ~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~ 75 (90)
T 2e3h_A 1 ELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS 75 (90)
T ss_dssp CCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCC
T ss_pred CCcCCCEEEECCCCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCC
Confidence 489999999998789999999999999999999999999999999999999999999999999999999975443
No 10
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.97 E-value=7.7e-31 Score=183.17 Aligned_cols=74 Identities=55% Similarity=1.100 Sum_probs=70.3
Q ss_pred CCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCC
Q psy9801 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPM 92 (132)
Q Consensus 19 ~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~ 92 (132)
++|+|||||.|.+...|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...+.
T Consensus 1 d~~~vG~rv~v~g~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~ 74 (86)
T 2e3i_A 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQ 74 (86)
T ss_dssp CCCCTTCEEEETTTEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCC
T ss_pred CCccCCCEEEECCCcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccc
Confidence 36899999999987899999999999999999999999999999999999999999999999999999998654
No 11
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.97 E-value=5.5e-31 Score=185.65 Aligned_cols=79 Identities=35% Similarity=0.725 Sum_probs=73.6
Q ss_pred cCCCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCC
Q psy9801 16 EDTDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSG 94 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~g-~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~ 94 (132)
+....|+|||||+|.+ .++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..++.+.
T Consensus 8 ~~~~~~~vG~rV~V~~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~~g 87 (91)
T 1whk_A 8 EGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGISG 87 (91)
T ss_dssp CCCCCCCSSCEEEESSSCCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCCCC
T ss_pred CCCccccCCCEEEECCCCeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCCCC
Confidence 4567899999999985 689999999999999999999999999999999999999999999999999999999987543
No 12
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=187.81 Aligned_cols=77 Identities=47% Similarity=0.951 Sum_probs=70.2
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCC
Q psy9801 17 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMS 93 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~ 93 (132)
....|+|||||+|.+.++|+|||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|..+.+.
T Consensus 7 ~~~~~~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~~~~ 83 (96)
T 2z0w_A 7 GEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDS 83 (96)
T ss_dssp ----CCTTCCCCCCCCCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCTTC-
T ss_pred CcccCCCCCEEEECCCcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceeccch
Confidence 45679999999998878999999999999999999999999999999999999999999999999999999998764
No 13
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.97 E-value=2.8e-30 Score=179.95 Aligned_cols=74 Identities=38% Similarity=0.814 Sum_probs=67.4
Q ss_pred CCCcccccEEEEC-CCceEEEEEEeecC-CCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCC
Q psy9801 18 TDSFIIGDRVYVG-GTKSGRIAFIGETK-FAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSP 91 (132)
Q Consensus 18 ~~~l~vGdRV~V~-g~~~GtVRyiG~v~-~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~ 91 (132)
..+|+|||||+|. +.++|+|||||+++ +++|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|+...
T Consensus 3 m~~i~vG~Rv~v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd 78 (84)
T 4b6m_A 3 METIHVGDRCLCRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGD 78 (84)
T ss_dssp --CCCTTCEEEETTTTEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECC
T ss_pred ccCcccCCEEEEcCCCeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECC
Confidence 4579999999996 45799999999986 57899999999999999999999999999999999999999999864
No 14
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=2.7e-30 Score=190.69 Aligned_cols=83 Identities=43% Similarity=0.805 Sum_probs=76.2
Q ss_pred ceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeC
Q psy9801 11 SQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKS 90 (132)
Q Consensus 11 ~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~ 90 (132)
++.+......|+||+||.|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|..+
T Consensus 22 s~~~~~~~~~l~VG~RV~V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~~~ 101 (122)
T 2coz_A 22 SVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHI 101 (122)
T ss_dssp CCCCCCSCSSCCTTEEEEETTTEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECC
T ss_pred ccccccccccCcCCCEEEECCCcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCccC
Confidence 34445567789999999999878999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy9801 91 PMS 93 (132)
Q Consensus 91 ~~~ 93 (132)
++.
T Consensus 102 pe~ 104 (122)
T 2coz_A 102 PEN 104 (122)
T ss_dssp CTT
T ss_pred Ccc
Confidence 753
No 15
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=5.9e-30 Score=186.41 Aligned_cols=77 Identities=39% Similarity=0.767 Sum_probs=72.2
Q ss_pred CCCcccccEEEECC-CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCCCC
Q psy9801 18 TDSFIIGDRVYVGG-TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPMSG 94 (132)
Q Consensus 18 ~~~l~vGdRV~V~g-~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~~~ 94 (132)
...|+|||||.|.+ ..+|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|...++..
T Consensus 31 ~~~l~VG~RV~V~~~g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~~~~ 108 (112)
T 2coy_A 31 ARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFEDSG 108 (112)
T ss_dssp CCCCCTTCEEEETTTCCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECCCCC
T ss_pred cccCCCCCEEEECCCCeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcCCCC
Confidence 45799999999975 479999999999999999999999999999999999999999999999999999999988653
No 16
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=4.5e-30 Score=183.83 Aligned_cols=77 Identities=38% Similarity=0.789 Sum_probs=72.5
Q ss_pred cCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCC
Q psy9801 16 EDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPM 92 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~ 92 (132)
+....|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|.+.+.
T Consensus 19 ~~~~~l~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~ 95 (100)
T 2cow_A 19 EVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATS 95 (100)
T ss_dssp CCCSSCCTTCEEECSSSCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCC
T ss_pred cCCccccCCCEEEECCCcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCC
Confidence 34557999999999877899999999999999999999999999999999999999999999999999999999875
No 17
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=5.7e-30 Score=181.29 Aligned_cols=76 Identities=25% Similarity=0.368 Sum_probs=70.1
Q ss_pred CCCCcccccEEEEC--C---CceEEEEEEeecC---CCCCcEEEEEEcCC---CCCCCcEECCEEeeecCCCCeeEEecC
Q psy9801 17 DTDSFIIGDRVYVG--G---TKSGRIAFIGETK---FAPGDWAGVVLDDP---VGKNDGQVGQARYFQCEPRFGLFAPVH 85 (132)
Q Consensus 17 ~~~~l~vGdRV~V~--g---~~~GtVRyiG~v~---~~~g~wvGVELDep---~GknDGt~~G~rYF~C~p~~GiFv~~~ 85 (132)
...+|+|||||+|. + .++|||||||+++ +.+|+|+|||||+| .|||||+++|+|||+|+|+||+||+++
T Consensus 4 ~~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~ 83 (95)
T 1whl_A 4 GSSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALD 83 (95)
T ss_dssp SCCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGG
T ss_pred ccccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHH
Confidence 45689999999994 3 4799999999998 79999999999999 899999999999999999999999999
Q ss_pred CeeeCCC
Q psy9801 86 KVSKSPM 92 (132)
Q Consensus 86 kv~~~~~ 92 (132)
+|....+
T Consensus 84 ~v~~~~~ 90 (95)
T 1whl_A 84 KLELIES 90 (95)
T ss_dssp GEEECCS
T ss_pred HeEEcCc
Confidence 9998764
No 18
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.96 E-value=1.3e-29 Score=179.69 Aligned_cols=74 Identities=41% Similarity=0.873 Sum_probs=69.3
Q ss_pred CCCcccccEEEEC--C--CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCC
Q psy9801 18 TDSFIIGDRVYVG--G--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSP 91 (132)
Q Consensus 18 ~~~l~vGdRV~V~--g--~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~ 91 (132)
...|+||+||+|. + .++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||++++|....
T Consensus 9 ~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~gd 86 (95)
T 1lpl_A 9 AKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGD 86 (95)
T ss_dssp HHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEESC
T ss_pred hhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceECC
Confidence 4469999999997 4 579999999999999999999999999999999999999999999999999999999863
No 19
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=1.7e-29 Score=190.35 Aligned_cols=76 Identities=54% Similarity=1.050 Sum_probs=72.2
Q ss_pred CCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCCC
Q psy9801 17 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSPM 92 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~~ 92 (132)
....|+|||||+|.+.++|+|||||++++.+|.|+|||||+|.|||||+++|+|||+|+++||+||++++|.+...
T Consensus 61 ~~~~l~VG~RV~V~G~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~~~ 136 (141)
T 2cp5_A 61 FVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVS 136 (141)
T ss_dssp CCCCCCTTCEEEETTSCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESSCC
T ss_pred hhhcCcCCCEEEECCCcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeeccC
Confidence 4567999999999987899999999999999999999999999999999999999999999999999999998764
No 20
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.96 E-value=1.6e-29 Score=181.99 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=70.7
Q ss_pred ccCCCCcccccEEEECC--CceEEEEEEeecCCCCCcEEEEEE-cCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeC
Q psy9801 15 TEDTDSFIIGDRVYVGG--TKSGRIAFIGETKFAPGDWAGVVL-DDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKS 90 (132)
Q Consensus 15 ~~~~~~l~vGdRV~V~g--~~~GtVRyiG~v~~~~g~wvGVEL-Dep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~ 90 (132)
......|+|||||+|.+ .++|||||||++++.+|+|+|||| |+|.|||||+++|+|||+|+|+||+||++++|..-
T Consensus 12 ~~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~ 90 (104)
T 1ixd_A 12 PGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPD 90 (104)
T ss_dssp TTSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEEC
T ss_pred CCCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceec
Confidence 34677899999999985 589999999999999999999999 88999999999999999999999999999999974
No 21
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.96 E-value=6.7e-29 Score=180.99 Aligned_cols=74 Identities=36% Similarity=0.813 Sum_probs=69.1
Q ss_pred CCCcccccEEEEC--C--CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecCCeeeCC
Q psy9801 18 TDSFIIGDRVYVG--G--TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVHKVSKSP 91 (132)
Q Consensus 18 ~~~l~vGdRV~V~--g--~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~kv~~~~ 91 (132)
...|+|||||.|. + ..+|||||||++++.+|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|....
T Consensus 30 ~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~gd 107 (113)
T 1whg_A 30 ASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGD 107 (113)
T ss_dssp HTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEEE
T ss_pred hhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHHeEECC
Confidence 4579999999996 4 489999999999999999999999999999999999999999999999999999998753
No 22
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.94 E-value=1.3e-26 Score=163.83 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=66.1
Q ss_pred CCCCcccccEEEEC-C--CceEEEEEEeecCCC--CCcEEEEEEcCCCCCCCcEECCEEee-ecCCCCeeEEecCCeee
Q psy9801 17 DTDSFIIGDRVYVG-G--TKSGRIAFIGETKFA--PGDWAGVVLDDPVGKNDGQVGQARYF-QCEPRFGLFAPVHKVSK 89 (132)
Q Consensus 17 ~~~~l~vGdRV~V~-g--~~~GtVRyiG~v~~~--~g~wvGVELDep~GknDGt~~G~rYF-~C~p~~GiFv~~~kv~~ 89 (132)
+...|+||+||+|. + .++|||||||++++. .|+|+|||||||.|||||+++|+||| .|+++||+||++.++..
T Consensus 6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~~~ 84 (92)
T 1whm_A 6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIP 84 (92)
T ss_dssp CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEE
T ss_pred cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccCcc
Confidence 45679999999996 2 379999999999864 69999999999999999999999999 99999999999999944
No 23
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=66.46 E-value=8.6 Score=36.89 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=55.9
Q ss_pred ceeccCCcceEeccCCCCcccccEEE-ECC------CceEEEEEEeecCCCCCcEEEEEEcCCC-CCCCcEECCEEeeec
Q psy9801 3 ALWKAYDSSQVLTEDTDSFIIGDRVY-VGG------TKSGRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQC 74 (132)
Q Consensus 3 ~~~~~s~~~~~l~~~~~~l~vGdRV~-V~g------~~~GtVRyiG~v~~~~g~wvGVELDep~-GknDGt~~G~rYF~C 74 (132)
||.+.+++...| ....+.+||||. |.. ..+|||-=|-.+ .....+-|-||++. |.+ +++| +|
T Consensus 1050 allkP~~a~~~L--~~Q~F~LGDRVv~VqdsG~VPl~~kGTVVGi~~~--~~~~~ldVvFD~~F~~G~--tlgg----rc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLL--RSQRFHLGDRVMYIQDSGKVPLHSKGTVVGYTSI--GKNVSIQVLFDNEIIAGN--NFGG----RL 1119 (1155)
T ss_pred HeeCHHHhhccc--cCCcccCCCeEEEecCCCCCccccceEEEEEecC--CCceEEEEEeccCccCCC--cccc----cc
Confidence 456666655555 367899999996 442 257888655333 34677889999996 443 3333 49
Q ss_pred CCCCeeEEecCCeeeCCC
Q psy9801 75 EPRFGLFAPVHKVSKSPM 92 (132)
Q Consensus 75 ~p~~GiFv~~~kv~~~~~ 92 (132)
.+.+|.-|+.+.|.-+..
T Consensus 1120 s~~RG~~v~~s~lLNlT~ 1137 (1155)
T 3pie_A 1120 QTRRGLGLDSSFLLNLSD 1137 (1155)
T ss_pred cccccccccHHHeEEcCC
Confidence 999999999998877664
No 24
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=53.45 E-value=11 Score=29.59 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=21.3
Q ss_pred CCCcccccEEEECCCceEEEEEEeec
Q psy9801 18 TDSFIIGDRVYVGGTKSGRIAFIGET 43 (132)
Q Consensus 18 ~~~l~vGdRV~V~g~~~GtVRyiG~v 43 (132)
...+++||+|++.+ ..|+|.-||-.
T Consensus 126 ~~pf~vGD~I~i~~-~~G~V~~I~l~ 150 (285)
T 3udc_A 126 EDQFSVGDYVTING-ISGTVEEIGLR 150 (285)
T ss_dssp TTSCCTTCEEEETT-EEEEEEEECSS
T ss_pred hCCccCCCEEEECC-EEEEEEEeeee
Confidence 35799999999987 68999999765
No 25
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=50.43 E-value=21 Score=25.33 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=35.1
Q ss_pred CCCcccccEEEECC-----CceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeecCCCCeeEEecC
Q psy9801 18 TDSFIIGDRVYVGG-----TKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVH 85 (132)
Q Consensus 18 ~~~l~vGdRV~V~g-----~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C~p~~GiFv~~~ 85 (132)
..+|++||+|.... .+.-++.|+..-+.....++=|+.++ | +-+...|.|=+|+.-.
T Consensus 18 i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~----------g-~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 18 LGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDG----------G-AVLTVTPAHLVSVWQP 79 (145)
T ss_dssp GGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETT----------S-CEEEECTTCEEEEEET
T ss_pred HHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECC----------C-CEEEEeCCCEEEEecC
Confidence 44789999998643 13455666644443345677777652 2 4466677777777543
No 26
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=48.98 E-value=12 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCCcccccEEEECCCceEEEEEEeec
Q psy9801 18 TDSFIIGDRVYVGGTKSGRIAFIGET 43 (132)
Q Consensus 18 ~~~l~vGdRV~V~g~~~GtVRyiG~v 43 (132)
...+++||+|++.+ ..|+|.-||-.
T Consensus 127 ~~pf~vGD~I~i~g-~~G~V~~I~l~ 151 (286)
T 2vv5_A 127 FRPFRAGEYVDLGG-VAGTVLSVQIF 151 (286)
T ss_dssp TCSSCTTCEEESSS-CEEEEEEECSS
T ss_pred cCCccCCCEEEECC-EEEEEEEEEeE
Confidence 45799999999987 69999999765
No 27
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=41.96 E-value=59 Score=22.87 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=37.9
Q ss_pred EEEEEEeecCCCCCcEEEEEEcCC---------CCCCCcEE-----CCEEeeec-CCCCeeEEecCCeeeCCCCCCCcc
Q psy9801 35 GRIAFIGETKFAPGDWAGVVLDDP---------VGKNDGQV-----GQARYFQC-EPRFGLFAPVHKVSKSPMSGTKRL 98 (132)
Q Consensus 35 GtVRyiG~v~~~~g~wvGVELDep---------~GknDGt~-----~G~rYF~C-~p~~GiFv~~~kv~~~~~~~~~~~ 98 (132)
..++++|.+....+.|+=|+-|.. .|+|+|.+ +.+..=+- +.+.|-++.-.....+.++...++
T Consensus 25 d~LkmvGtl~~~~~~~ALV~~dG~vyrVk~G~yiG~N~GrI~~It~~~I~l~E~v~Dg~G~W~eR~~~L~L~~~~~~~~ 103 (113)
T 2ivw_A 25 ENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAELLLNSSDKNTE 103 (113)
T ss_dssp TTEEEEEEEECSSSEEEEEEETTEEEEECSSEEETTTEEEEEEEETTEEEEEEEEECTTSSEEEEEEEEECCCSCCCCC
T ss_pred hheEEEEEEccCCeEEEEEEeCCcEEEEccCCEeccCCCEEEEEeCCeEEEEEEEECCCCCEEEEeeEEEccCCCCccc
Confidence 457888888777777877775332 26788877 33444443 456777774444444444443333
No 28
>1hbn_C Methyl-coenzyme M reductase I gamma subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: d.58.31.1 PDB: 1hbm_C* 1hbo_C* 1hbu_C* 3m1v_C* 3m2r_C* 3m2u_C* 3m2v_C* 3m30_C* 3m32_C* 3pot_C* 1mro_C*
Probab=41.39 E-value=5.9 Score=31.65 Aligned_cols=45 Identities=31% Similarity=0.439 Sum_probs=36.4
Q ss_pred CcceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCC--CC
Q psy9801 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV--GK 61 (132)
Q Consensus 9 ~~~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~--Gk 61 (132)
-|+++|.++..-|-.=+|+.+.. ..|.|.|+=.- +|+.||++. ||
T Consensus 156 GHSlRLdEnGmMFD~L~R~~~d~-~~G~V~yvKDq-------vG~plD~~V~~Gk 202 (248)
T 1hbn_C 156 GHSLRLDEDGMMFDMLRRQIYNK-DTGRVEMVKNQ-------IGDELDEPVDLGE 202 (248)
T ss_dssp CTTSCBCTTSCCCCTTCCEEECT-TTCCEEEEECT-------TSCEEEEEEECCC
T ss_pred cceeeecCCchhHHHHHhhcccc-CCCcEEEeccc-------cCCcccCcccCCC
Confidence 48899999998888889998875 48899998433 788999874 65
No 29
>1e6v_C Methyl-coenzyme M reductase I gamma subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI enzyme; HET: F43 TP7; 2.70A {Methanopyrus kandleri} SCOP: d.58.31.1
Probab=39.80 E-value=5.8 Score=31.81 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=36.2
Q ss_pred CcceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCC--CC
Q psy9801 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV--GK 61 (132)
Q Consensus 9 ~~~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~--Gk 61 (132)
-|+++|.++..-|-.=+|+.+.. ..|.|.|+=.- +|+.||++. ||
T Consensus 161 GHSlRLdEnGmMFD~L~R~~~d~-~~G~V~yvKDq-------vG~plD~~V~~Gk 207 (258)
T 1e6v_C 161 GHALRLDENGLMLHALRRYRLNE-ETGEVEYVKDQ-------VGIELDEPIPVGA 207 (258)
T ss_dssp CTTSCBCTTSCCCCTTCCEEEET-TTTEEEEEECT-------TSCEEEEEEECCC
T ss_pred cceeeecCCChhHHHHHhhcccc-CCCcEEEeccc-------cCCcccCcccCCC
Confidence 48899999988888888998875 47899998433 788999874 65
No 30
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=39.54 E-value=1.3e+02 Score=23.27 Aligned_cols=74 Identities=22% Similarity=0.455 Sum_probs=50.2
Q ss_pred cCCCCcccccEEEEC----C-CceEEEEEEeecCCCC-C-cEEEEEEcCCCCC-CCcEECCEEeeecCCCCeeEEecCCe
Q psy9801 16 EDTDSFIIGDRVYVG----G-TKSGRIAFIGETKFAP-G-DWAGVVLDDPVGK-NDGQVGQARYFQCEPRFGLFAPVHKV 87 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~----g-~~~GtVRyiG~v~~~~-g-~wvGVELDep~Gk-nDGt~~G~rYF~C~p~~GiFv~~~kv 87 (132)
.+...+++|+.|.|. + .+.|+|.+|++..... + ..+=|+++++.+. ..|.+- .-.|......++.||.+-|
T Consensus 217 ~~~~~i~~G~~v~v~~~~~~~~~~g~v~~i~~~~d~~~~~~~v~~~~~~~~~~l~~G~~~-~v~i~~~~~~~l~vP~~Av 295 (359)
T 3lnn_A 217 KDLGHVYVGQSATVKFDAYDDPQPGKVRYVGQILDADTRTTKVRMVFDNPDGRLRPGMFA-QATFLSQPHEGIVVPMSAI 295 (359)
T ss_dssp GGSTTCCTTCEEEEBCSSCSSCEEEEEEECCCCCCTTSCCEEEEEEEECSSCCCCTTCEE-EEEEECCCEEEEEEEGGGC
T ss_pred HHHhhCCCCCeEEEEEcCCCCcEEEEEEEEecccCCCCcEEEEEEEecCCCCCcCCCCEE-EEEEecCCCCceEeCHHHh
Confidence 356788999999885 2 3789999999886533 3 4455778887643 455542 2344555677888888777
Q ss_pred eeC
Q psy9801 88 SKS 90 (132)
Q Consensus 88 ~~~ 90 (132)
...
T Consensus 296 ~~~ 298 (359)
T 3lnn_A 296 VQS 298 (359)
T ss_dssp EET
T ss_pred ecc
Confidence 654
No 31
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.56 E-value=32 Score=21.04 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCCCcccccEEEECC-C---ceEEEEEE
Q psy9801 17 DTDSFIIGDRVYVGG-T---KSGRIAFI 40 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g-~---~~GtVRyi 40 (132)
+...+++||.|+|.. . ..|+|.-+
T Consensus 4 ~~~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 4 GSSGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp CCSSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 456799999999973 3 45555443
No 32
>1e6y_C Methyl-coenzyme M reductase subunit gamma; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: d.58.31.1
Probab=36.95 E-value=7.9 Score=30.88 Aligned_cols=43 Identities=33% Similarity=0.354 Sum_probs=34.7
Q ss_pred CcceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCC--CC
Q psy9801 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV--GK 61 (132)
Q Consensus 9 ~~~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~--Gk 61 (132)
-|+++|.|+..-|-.=+|+.+ ..|.|.|+=. .+|+.||++. ||
T Consensus 157 GHSlRLdEnGmMFD~L~R~~~---~~G~V~yvKD-------qvG~plD~~V~~Gk 201 (247)
T 1e6y_C 157 GHSVRLQEDGVMFDMLDRRRL---ENGTIIMDKD-------QVAIPLDRKVDLGK 201 (247)
T ss_dssp CTTSCBCTTSCCCCTTCCEEE---ETTEEEEEEC-------TTCCEEEEEEECCC
T ss_pred cceeeecCCchhHHHHHhhhh---cCCcEEEEcc-------ccCCcccCcccCCC
Confidence 488999999888888888888 4789999843 3789999875 65
No 33
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=34.50 E-value=51 Score=22.96 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCCcccccEEEEC----C-----CceEEEEEEeecCC----CCCcEEEEEEcC
Q psy9801 18 TDSFIIGDRVYVG----G-----TKSGRIAFIGETKF----APGDWAGVVLDD 57 (132)
Q Consensus 18 ~~~l~vGdRV~V~----g-----~~~GtVRyiG~v~~----~~g~wvGVELDe 57 (132)
...+++|+.|.+. + ...|.|.|+-+... ..| +||++.+
T Consensus 39 ~~~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi~p~~~~~~~p~G--~GVqF~~ 89 (117)
T 3cnr_A 39 PKRYMLGDEVFLLLTLPDSSERLPVAGKVIWTTPAGAQGNRAAG--IGVQFPD 89 (117)
T ss_dssp CSCCCTTCEEEEEEECTTCSCEEEEEEEEEEEECC------CCE--EEEECCS
T ss_pred CCccCCCCEEEEEEEcCCCCceEEEEEEEEEecCCCCCCCCCCc--eEEEEec
Confidence 5679999998774 2 25799999955421 234 8999865
No 34
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=31.34 E-value=71 Score=30.58 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=37.0
Q ss_pred CCCcccccEEEEC---C----CceEEEEEEeecCC----------CCCcEEEEEEcCCC-CCCCcEECCEEeeecCCCCe
Q psy9801 18 TDSFIIGDRVYVG---G----TKSGRIAFIGETKF----------APGDWAGVVLDDPV-GKNDGQVGQARYFQCEPRFG 79 (132)
Q Consensus 18 ~~~l~vGdRV~V~---g----~~~GtVRyiG~v~~----------~~g~wvGVELDep~-GknDGt~~G~rYF~C~p~~G 79 (132)
...+.+||||..- + ..+|||-=|-.+.. .....+-|-+|+|. |.++ + ..|.+.+|
T Consensus 1056 ~q~F~LgDRVV~V~dsg~VP~g~rGTVVGI~~~~~~~~~r~e~~~~~~~~~dVlFD~~F~gG~~--i-----~G~~~~r~ 1128 (1140)
T 2y35_A 1056 KRPVRLFDRVVIVRTIYMVPVGTKGTVIGIHPVTDPNPVRLECVHAVDTFCKVLFDSPVPNCNN--I-----HGIAEDRV 1128 (1140)
T ss_dssp SSCCCTTCEEEECSCBTTBCTTCEEEECCBEEEECSSCSSTTTTTCEEEEEEEEESSCC-------------------CE
T ss_pred CCcccCcCeEEEEccCCCCcccceeEEEEEecCCCCcccccccccccCceeEEEecCCcCCCcc--c-----CCccccce
Confidence 4689999999753 2 26899876664432 12578999999996 4442 3 33344667
Q ss_pred eEEecCCee
Q psy9801 80 LFAPVHKVS 88 (132)
Q Consensus 80 iFv~~~kv~ 88 (132)
.=++...+.
T Consensus 1129 yr~p~~~l~ 1137 (1140)
T 2y35_A 1129 YKVPEIALV 1137 (1140)
T ss_dssp EEEEGGGEE
T ss_pred eeccccceE
Confidence 666665543
No 35
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=30.29 E-value=19 Score=28.36 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=12.9
Q ss_pred cCCCCcccccEEEEC
Q psy9801 16 EDTDSFIIGDRVYVG 30 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~ 30 (132)
.....|+|||||.|.
T Consensus 137 ~~~~~F~vGd~Vrv~ 151 (229)
T 3hht_B 137 SASPRFKVGERIKTK 151 (229)
T ss_dssp SSCCSCCTTCEEEEC
T ss_pred CCCCCCCCCCEEEEC
Confidence 456889999999996
No 36
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=28.20 E-value=24 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=15.1
Q ss_pred ceEeccCCCCcccccEEEECC
Q psy9801 11 SQVLTEDTDSFIIGDRVYVGG 31 (132)
Q Consensus 11 ~~~l~~~~~~l~vGdRV~V~g 31 (132)
..+-......|++||+|.|..
T Consensus 129 ~~r~~~~~~~F~vGd~Vrv~~ 149 (226)
T 1ugp_B 129 ASREVDRPPKFKEGDVVRFST 149 (226)
T ss_dssp CEECCSSCCSCCTTCEEEECC
T ss_pred ccCCCCCCCcCCCCCeEEEcc
Confidence 333334578899999999973
No 37
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=27.91 E-value=40 Score=21.48 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=18.5
Q ss_pred CcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCCCCCCcEECCEEeeec--CCCCeeEEecCCeeeCC
Q psy9801 20 SFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC--EPRFGLFAPVHKVSKSP 91 (132)
Q Consensus 20 ~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~GknDGt~~G~rYF~C--~p~~GiFv~~~kv~~~~ 91 (132)
.|++||.|.... .|+=||. |||--+-.| .- +.|+.- ..+.-+|||.+++..+.
T Consensus 2 ~l~~GD~VVh~~--hGiG~~~-----------gi~~~~v~g----~~--~ey~~l~y~~~~~l~VPv~~~~~i~ 56 (71)
T 3mlq_E 2 PHMPGDYLIHPE--HGVGQYL-----------GLETREVLG----VK--RDYLVLRYKGEGKLYLPVEQLPLLK 56 (71)
T ss_dssp ----------------CEEEE-----------EEEEEEETT----EE--EEEEEEEETTTEEEEEESSSCC---
T ss_pred cCCCCCEEEECC--CeeEEEe-----------EEEEEEeCC----ee--EEEEEEEECCCCEEEEEhhhhccee
Confidence 578999988765 4444444 333222112 11 345543 35557999999988654
No 38
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=27.49 E-value=15 Score=26.65 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.5
Q ss_pred CCCCcccccEEEECC
Q psy9801 17 DTDSFIIGDRVYVGG 31 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g 31 (132)
....|++||+|.|..
T Consensus 33 ~~prF~vGDrVrvr~ 47 (126)
T 2zzd_A 33 GKSKFNVGDRVRIKD 47 (126)
T ss_dssp CSCSSCTTCEEEECC
T ss_pred CCCccCCCCEEEEcc
Confidence 467899999999973
No 39
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=26.58 E-value=75 Score=24.52 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCCCcccccEEEEC--C----CceEEEEEEeecCCCC-C---cEEEEEEcCCCCC-CCcEECCEEeeecC-CCCeeEEec
Q psy9801 17 DTDSFIIGDRVYVG--G----TKSGRIAFIGETKFAP-G---DWAGVVLDDPVGK-NDGQVGQARYFQCE-PRFGLFAPV 84 (132)
Q Consensus 17 ~~~~l~vGdRV~V~--g----~~~GtVRyiG~v~~~~-g---~wvGVELDep~Gk-nDGt~~G~rYF~C~-p~~GiFv~~ 84 (132)
+...+++|+.|.|. + .+.|+|.+|.+..... + ..+=|+++++.+. ..|.+--. .|... ...++.||.
T Consensus 203 ~~~~v~~G~~v~v~~~~~~~~~~~g~V~~i~~~~~~~~~~~~~~v~i~~~~~~~~l~~G~~~~v-~i~~~~~~~~l~vP~ 281 (341)
T 3fpp_A 203 DVIHLKPGQKAWFTVLGDQLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQV-HIQLTDVKNVLTIPL 281 (341)
T ss_dssp GSTTCCTTCCCEECCSSSSSSCBCCCEEEECSSCCBSSSCBCCEEEEEEECSSSCCCTTCEEEE-EEESCCCCSSCC---
T ss_pred HHhhCCCCCEEEEEEecCCCCEEEEEEEEEecCccccCceEEEEEEEEeCCCccccCCCCEEEE-EEEEccCCCcEEcch
Confidence 56778999999885 1 3689999999886432 2 3566788877653 44554322 33343 455677777
Q ss_pred CCeee
Q psy9801 85 HKVSK 89 (132)
Q Consensus 85 ~kv~~ 89 (132)
+-|..
T Consensus 282 ~Av~~ 286 (341)
T 3fpp_A 282 SALGD 286 (341)
T ss_dssp -----
T ss_pred HHhcC
Confidence 66644
No 40
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=26.53 E-value=93 Score=18.40 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=16.7
Q ss_pred CCcccccEEEECC----CceEEEEEE
Q psy9801 19 DSFIIGDRVYVGG----TKSGRIAFI 40 (132)
Q Consensus 19 ~~l~vGdRV~V~g----~~~GtVRyi 40 (132)
..+++||+|.|.. ...|+|.-+
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v 28 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEI 28 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEE
Confidence 4688999999974 367777766
No 41
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=26.23 E-value=20 Score=28.02 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=12.7
Q ss_pred cCCCCcccccEEEEC
Q psy9801 16 EDTDSFIIGDRVYVG 30 (132)
Q Consensus 16 ~~~~~l~vGdRV~V~ 30 (132)
.....|++||+|.|.
T Consensus 126 ~~~~~F~vGd~Vrv~ 140 (219)
T 3qyh_B 126 GARARFAVGDKVRVL 140 (219)
T ss_dssp CSCCCCCTTCEEEEC
T ss_pred CCCCCCCCCCEEEEC
Confidence 356789999999996
No 42
>3sqg_C Methyl-coenzyme M reductase, gamma subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=24.68 E-value=6.9 Score=31.68 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=31.7
Q ss_pred CcceEeccCCCCcccccEEEECCCceEEEEEEeecCCCCCcEEEEEEcCCC
Q psy9801 9 DSSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPV 59 (132)
Q Consensus 9 ~~~~~l~~~~~~l~vGdRV~V~g~~~GtVRyiG~v~~~~g~wvGVELDep~ 59 (132)
-|+++|.|+..-|-.=+|+. ....|+|.|+=. .+|+.||++.
T Consensus 157 GHSLRLdE~GmMFDmL~R~~--de~~G~V~yvKD-------QvG~plD~~V 198 (279)
T 3sqg_C 157 GHAVRLDKDGMMFDALRRWS--RGADGTVTYVKD-------MIGGAMDKEV 198 (279)
T ss_dssp CTTSCBCTTSCCCCTTCCEE--ECTTSCEEECSC-------TTSCCCSSCE
T ss_pred cceeeecCCChhHHHHHhhh--ccCCCcEEEehh-------hcCCcccCcc
Confidence 48899999988888888855 345899999833 3677777764
No 43
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=20.24 E-value=21 Score=27.82 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCCCcccccEEEECC--------------CceEEE--EEEeecC
Q psy9801 17 DTDSFIIGDRVYVGG--------------TKSGRI--AFIGETK 44 (132)
Q Consensus 17 ~~~~l~vGdRV~V~g--------------~~~GtV--RyiG~v~ 44 (132)
....|++||+|.|.. ...|+| +..|.-.
T Consensus 119 ~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~~~ 162 (212)
T 3a8g_B 119 ETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWP 162 (212)
T ss_dssp CCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBC
T ss_pred cCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccCcc
Confidence 467899999999973 257887 6666653
Done!