RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9801
(132 letters)
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 107 bits (270), Expect = 6e-32
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+++V + F++G+RV+V G K G + ++GET+FAPG WAGVVLDDPVGKNDG VG
Sbjct: 8 AAEVGDDFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGV 67
Query: 70 RYFQCEPRFGLFAPVHKVSKSP 91
RYF+C G+F K+++ P
Sbjct: 68 RYFECPALQGIFTRPSKLTRQP 89
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 106 bits (267), Expect = 1e-31
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRF 78
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 79 GLFAPVHKVSK 89
G+F K+++
Sbjct: 61 GIFTRPSKLTR 71
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 106 bits (267), Expect = 1e-31
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 19 DSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRF 78
D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP
Sbjct: 1 DDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 60
Query: 79 GLFAPVHKVSKSPMS 93
G+F K+++ +
Sbjct: 61 GIFTRPSKLTRKVQA 75
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 84
Score = 104 bits (262), Expect = 8e-31
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 3/83 (3%)
Query: 15 TEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 74
+ + +GDRV VGGTK+G + ++GET FA G+W GV LD+P+GKNDG V RYFQC
Sbjct: 2 SSGSSGLRLGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQC 61
Query: 75 EPRFGLFAPVHKVSK---SPMSG 94
P+FGLFAP+HKV + P SG
Sbjct: 62 PPKFGLFAPIHKVIRIGSGPSSG 84
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 105 bits (263), Expect = 2e-30
Identities = 47/88 (53%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
SS+ E D F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V
Sbjct: 54 SSETQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGV 113
Query: 70 RYFQCEPRFGLFAPVHKVSK---SPMSG 94
RYFQCEP G+F K+++ P SG
Sbjct: 114 RYFQCEPLKGIFTRPSKLTRKVSGPSSG 141
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 102 bits (257), Expect = 5e-30
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
S+ E + G+ V VG K+G + ++G F G W GV LD P GKNDG +G
Sbjct: 13 DSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGK 72
Query: 70 RYFQCEPRFGLFAPVHKVSK---SPMSG 94
+YF+C P +GL +V + P SG
Sbjct: 73 QYFRCNPGYGLLVRPSRVRRATSGPSSG 100
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 102 bits (255), Expect = 9e-30
Identities = 46/69 (66%), Positives = 56/69 (81%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GL
Sbjct: 2 LKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGL 61
Query: 81 FAPVHKVSK 89
FAPVHKV+K
Sbjct: 62 FAPVHKVTK 70
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 102 bits (255), Expect = 1e-29
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
++ + +GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+
Sbjct: 14 TTSRAMLTSLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRV 73
Query: 70 RYFQCEPRFGLFAPVHKVSKSPMSG 94
+YF+C P++G+FAP+ K+SK SG
Sbjct: 74 QYFKCAPKYGIFAPLSKISKLKDSG 98
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 102 bits (256), Expect = 1e-29
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+S ++ F IGDRV +G + G + F GET FA G WAGV LD P G N+G
Sbjct: 21 ASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGI 80
Query: 70 RYFQCEPRFGLFAPVHKVSKSP 91
YF+C+ + G+FAP K+S P
Sbjct: 81 AYFECKEKHGIFAPPQKISHIP 102
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 101 bits (254), Expect = 1e-29
Identities = 41/82 (50%), Positives = 50/82 (60%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
S L +GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG
Sbjct: 6 SGGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGV 65
Query: 70 RYFQCEPRFGLFAPVHKVSKSP 91
RYF C P+ GLFA V K+SK+
Sbjct: 66 RYFICPPKQGLFASVSKISKAV 87
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 101 bits (253), Expect = 2e-29
Identities = 35/77 (45%), Positives = 46/77 (59%)
Query: 15 TEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 74
+ +G+RV V G + G I F G T FAPG W G+ L+ P GKNDG VG +YF C
Sbjct: 5 SSGEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSC 64
Query: 75 EPRFGLFAPVHKVSKSP 91
PR+G+FAP +V +
Sbjct: 65 SPRYGIFAPPSRVQRVT 81
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 91
Score = 100 bits (252), Expect = 3e-29
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 10 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
SS E T G +V + + + ++G T FA G W G+ L GKNDG VG
Sbjct: 2 SSGSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGD 61
Query: 69 ARYFQCEPRFGLFAPVHKVSKSPMSG 94
RYF C+P +G+ +V+ +SG
Sbjct: 62 KRYFTCKPNYGVLVRPSRVTYRGISG 87
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Mus musculus}
SCOP: b.34.10.1
Length = 102
Score = 100 bits (252), Expect = 3e-29
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+ + +GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V
Sbjct: 15 LGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGV 74
Query: 70 RYFQCEPRFGLFAPVHKVSK---SPMSG 94
RYF C PR G+FAP ++ + P SG
Sbjct: 75 RYFTCAPRHGVFAPASRIQRIGSGPSSG 102
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 172
Score = 102 bits (254), Expect = 9e-29
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 10/127 (7%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+ + + IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGT 87
Query: 70 RYFQCEPRFGLFAPVHKVSK----------SPMSGTKRLSCAVHHGLRRSGSRESITSNF 119
RYFQC+P++GLFAPVHKV+K + + +R+ L+RS S S++S
Sbjct: 88 RYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMS 147
Query: 120 SNVTTTS 126
S ++ S
Sbjct: 148 SVASSVS 154
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 99.0 bits (247), Expect = 2e-28
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 10 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
S +G RV V G G +A++G T FA G W GV+LD+ GKNDG V
Sbjct: 2 SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQG 61
Query: 69 ARYFQCEPRFGLFAPVHKVSKSPMSGT 95
+YF C+ G+F ++
Sbjct: 62 RKYFTCDEGHGIFVRQSQIQVFEDGAD 88
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 98.6 bits (246), Expect = 3e-28
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 10 SSQVLTEDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQ 65
S ++ E + ++G+R V + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 1 SDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGS 60
Query: 66 VGQARYFQCEPRFGLFAPVHKVS 88
V RYF C+P++G F V
Sbjct: 61 VAGVRYFDCDPKYGGFVRPVDVK 83
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 97.2 bits (242), Expect = 1e-27
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 10 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
S +G RV V G G +A++G T FA G W GV+LD+ GKNDG V
Sbjct: 23 SRMSAEASARPLRVGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQG 82
Query: 69 ARYFQCEPRFGLFAPVHKVSKSPMSG 94
+YF C+ G+F ++ SG
Sbjct: 83 RKYFTCDEGHGIFVRQSQIQVFEDSG 108
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics,
riken structural genomics/proteomics initiative, RSGI,
antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 104
Score = 89.1 bits (221), Expect = 2e-24
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 17 DTDSFIIGDRVYVGGTKS--GRIAFIGETKFAPGDWAGVVLDDPV-GKNDGQVGQARYFQ 73
++ +G V G I +IG+ AG+ L+D G DG RYF
Sbjct: 14 NSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFT 73
Query: 74 CEPRFGLFAPVHKVSKSP 91
C + LF +
Sbjct: 74 CALKKALFVKLKSCRPDS 91
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR {Mus
musculus} SCOP: b.34.10.1
Length = 113
Score = 87.7 bits (217), Expect = 9e-24
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 16 EDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARY 71
+ +G R V + G + ++G T F PG W GV D+P+GKNDG V RY
Sbjct: 28 AQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRY 87
Query: 72 FQCEPRFGLFAPVHKVSK---SPMSG 94
F+C+ ++G F V+ P SG
Sbjct: 88 FECQAKYGAFVKPSAVTVGDSGPSSG 113
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 95
Score = 76.4 bits (188), Expect = 1e-19
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 14/86 (16%)
Query: 23 IGDRVYV-----GGTKSGRIAFIG---ETKFAPGDWAGVVLDD---PVGKNDGQVGQARY 71
+G V V G + F G + G + GV L + G DG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 72 FQCEPRFGLFAPVHKVSK---SPMSG 94
FQC+ G+F + K+ P SG
Sbjct: 70 FQCDEDCGVFVALDKLELIESGPSSG 95
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.10.1
Length = 92
Score = 54.0 bits (129), Expect = 6e-11
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 21 FIIGDRVYVG---GTKSGRIAFIGE--TKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCE 75
I RV + +SG + F K + G + GV +D+P+G DG+ +
Sbjct: 10 LEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFA 69
Query: 76 -PRFGLFAPVHKV---SKSPMSG 94
+ ++ + S P SG
Sbjct: 70 CVESTILLHINDIIPESSGPSSG 92
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national
project on protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Length = 200
Score = 30.0 bits (67), Expect = 0.14
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 34 SGRIAFIGETKFAP---GDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPV-HKVSK 89
SGRI+ + F W G V + ++ + F + +P+ H +K
Sbjct: 55 SGRISVMEMPHFGDKVNAKWLGKWHR-EVSLYEVLEAIKKHRSGQLWFLVRSPILHVGAK 113
Query: 90 SPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVTTTSVKSNLR 132
+ K ++ AV G + S I S + ++S R
Sbjct: 114 TLEDAVKLVNLAVSCGFKYSN----IKSISNKKLIVEIRSTER 152
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural
genomics, PSI, protein structure initiative, MCSG; 2.80A
{Sulfolobus solfataricus} SCOP: d.282.1.1
Length = 213
Score = 27.0 bits (59), Expect = 1.9
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 34 SGRIAFIGETKFA---PGDWAG-----VVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVH 85
SGRI + + D + + + +H
Sbjct: 51 SGRITIVDAEMPWDRKNSTIIFKNHLRITEQDLEDVLSKNQVRRLWLIVQG-----PIIH 105
Query: 86 KVSKSPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVTTTSVKSNLR 132
+K+ +G L A G + SG I + +++ +R
Sbjct: 106 IYAKNIETGWDILKIAREAGFKHSG----ILATNQKGVLVELRTGIR 148
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 27.0 bits (58), Expect = 2.2
Identities = 9/59 (15%), Positives = 13/59 (22%), Gaps = 18/59 (30%)
Query: 45 FAPGDWAGVVLDDPVGKNDGQV------------------GQARYFQCEPRFGLFAPVH 85
PG +G+ P G D + + G VH
Sbjct: 33 VKPGGSSGLAPSMPPGWGDYSPQGIALVQSVLFPGIIRRIILDKELEEGDWSGWSVSVH 91
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics,
NPPSFA, national on protein structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 188
Score = 26.1 bits (57), Expect = 3.0
Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 34 SGRIAFIGETKFAPGDWAGVVLD--DPVGKNDGQVGQARYFQCEPRFGLFAP--VHKVSK 89
+GRI I + A V P+ +++ V + + +H +
Sbjct: 41 TGRITLIEGEAHWLRNGARVAYKTHHPISRSE--VERVLRRGFTNLWLKVTGPILHLRVE 98
Query: 90 SPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVTTTSVKSNLR 132
L A +G + SG I+ + + S+
Sbjct: 99 GWQCAKSLLEAARRNGFKHSG---VISIAEDSRLVIEIMSSQS 138
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 26.2 bits (58), Expect = 3.7
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 17 DTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDP 58
+ + IGD G + F G FAP + + L DP
Sbjct: 369 NHGTIQIGDTFTQGE----MMKFTGIPNFAPELFRRIRLKDP 406
>4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO
PSI-biology, NEW YORK structural genomics research
consorti hydrolase; 2.00A {Pseudomonas aeruginosa}
Length = 451
Score = 26.0 bits (58), Expect = 5.1
Identities = 6/45 (13%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 13 VLTEDTDSFIIGD-RVYVGGTKSGRIAFIGETKFAPGDWAGVVLD 56
++ + ++ D + + G+IA + + A A + +
Sbjct: 17 IVPVEPAGVVLRDHALGIRD---GQIALVAPREQAMRHGATEIRE 58
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 25.6 bits (57), Expect = 6.5
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 13 VLTEDTDSFIIGD-RVYVGGTKSGRIAFIGETKFAPGDWAGVVLD 56
++T +TD ++ + + + G+IA I A G A L+
Sbjct: 15 IITVETDGEVLENHAIAIRD---GKIAAIIPAADAAGLEADERLE 56
>2bw4_A Copper-containing nitrite reductase; oxidoreductase,
denitrification, catalysis, enzyme mechanism, nitrate
assimilation; 0.90A {Achromobacter cycloclastes} SCOP:
b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A
1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A*
1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Length = 340
Score = 25.2 bits (55), Expect = 8.9
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVL 55
GD V+ G ET PG AG
Sbjct: 260 HGDYVWATGKFRNPPDLDQETWLIPGGTAGAAF 292
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 24.6 bits (53), Expect = 10.0
Identities = 3/36 (8%), Positives = 5/36 (13%), Gaps = 3/36 (8%)
Query: 82 APVHKVSKSPMSGTKR---LSCAVHHGLRRSGSRES 114
V + G R +
Sbjct: 56 KLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAA 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,973,875
Number of extensions: 107900
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 40
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.7 bits)