RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9801
(132 letters)
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 101 bits (252), Expect = 2e-29
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+S ++ F IGDRV +G + G + F GET FA G WAGV LD P G N+G
Sbjct: 14 ASVPTADELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGI 73
Query: 70 RYFQCEPRFGLFAPVHKVSKSP 91
YF+C+ + G+FAP K+S P
Sbjct: 74 AYFECKEKHGIFAPPQKISHIP 95
>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 94.4 bits (235), Expect = 2e-27
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 21 FIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGL 80
F +G+RV+V G K G I F+GET+FAPG WAG+VLD+P+GKNDG V RYFQCEP G+
Sbjct: 1 FRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGI 60
Query: 81 FAPVHKVSK 89
F K+++
Sbjct: 61 FTRPSKLTR 69
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3
{Caenorhabditis elegans [TaxId: 6239]}
Length = 98
Score = 92.6 bits (230), Expect = 3e-26
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 9 DSSQVLTEDTDSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDG 64
+S ++ E + ++G+R V + G +A++G TKF G W GV D+PVGKNDG
Sbjct: 3 ESDKLNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDG 62
Query: 65 QVGQARYFQCEPRFGLFAPVHKVSKS 90
V RYF C+P++G F V
Sbjct: 63 SVAGVRYFDCDPKYGGFVRPVDVKVG 88
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 71
Score = 91.3 bits (227), Expect = 3e-26
Identities = 46/67 (68%), Positives = 56/67 (83%)
Query: 23 IGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFA 82
IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+P++GLFA
Sbjct: 3 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFA 62
Query: 83 PVHKVSK 89
PVHKV+K
Sbjct: 63 PVHKVTK 69
>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 91.8 bits (228), Expect = 3e-26
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
S+ E + G+ V VG K+G + ++G F G W GV LD P GKNDG +G
Sbjct: 7 DSEEADEVPEWLREGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGK 66
Query: 70 RYFQCEPRFGLFAPVHKVSKS 90
+YF+C P +GL +V ++
Sbjct: 67 QYFRCNPGYGLLVRPSRVRRA 87
>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 92.2 bits (229), Expect = 4e-26
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 10 SSQVLTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQA 69
+ + +GD+V V G K G + F G+T FAPG W G+ LD P GK+DG V
Sbjct: 15 LGSLQQREGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGV 74
Query: 70 RYFQCEPRFGLFAPVHKVSK 89
RYF C PR G+FAP ++ +
Sbjct: 75 RYFTCAPRHGVFAPASRIQR 94
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59
(1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 91.3 bits (227), Expect = 5e-26
Identities = 40/76 (52%), Positives = 48/76 (63%)
Query: 14 LTEDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQ 73
L +GDRV + G K+G + F G T+FA G W GV LD+P GKNDG VG RYF
Sbjct: 4 LMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFI 63
Query: 74 CEPRFGLFAPVHKVSK 89
C P+ GLFA V K+SK
Sbjct: 64 CPPKQGLFASVSKISK 79
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 102
Score = 89.5 bits (222), Expect = 4e-25
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 18 TDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPR 77
+ +GDRV + G K G + F G T+FA G WAG+ LD+P GKN+G VG+ +YF+C P+
Sbjct: 22 SLGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPK 81
Query: 78 FGLFAPVHKVSKSPMSG 94
+G+FAP+ K+SK SG
Sbjct: 82 YGIFAPLSKISKLKDSG 98
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 89.4 bits (221), Expect = 3e-24
Identities = 55/121 (45%), Positives = 75/121 (61%), Gaps = 10/121 (8%)
Query: 16 EDTDSFIIGDRVYVGGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCE 75
+ IGDRV VGGTK+G + F+GET FA G+W GV LD+P+GKNDG V RYFQC+
Sbjct: 27 KGERELKIGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ 86
Query: 76 PRFGLFAPVHKV----------SKSPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVTTT 125
P++GLFAPVHKV +K+ + +R+ L+RS S S++S S ++
Sbjct: 87 PKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSV 146
Query: 126 S 126
S
Sbjct: 147 S 147
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 91
Score = 86.0 bits (213), Expect = 8e-24
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 10 SSQVLTEDTDSFIIGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQ 68
SS E T G +V + + + ++G T FA G W G+ L GKNDG VG
Sbjct: 2 SSGSSGEGTVKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGD 61
Query: 69 ARYFQCEPRFGLFAPVHKVSKSPMSG 94
RYF C+P +G+ +V+ +SG
Sbjct: 62 KRYFTCKPNYGVLVRPSRVTYRGISG 87
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 84.1 bits (208), Expect = 6e-23
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 9 DSSQVLTEDTDSFIIGDRVYVGGTKS--GRIAFIGETKFAPGDWAGVVLDD-PVGKNDGQ 65
+ ++ +G V G I +IG+ AG+ L+D G DG
Sbjct: 6 SGLAMPPGNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGT 65
Query: 66 VGQARYFQCEPRFGLFAPVHKVSKSP 91
RYF C + LF +
Sbjct: 66 FRGTRYFTCALKKALFVKLKSCRPDS 91
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 82.5 bits (204), Expect = 1e-22
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 23 IGDRVYV-GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQCEPRFGLF 81
+G RV V G G +A++G T FA G W GV+LD+ GKNDG V +YF C+ G+F
Sbjct: 4 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIF 63
Query: 82 APVHKV 87
++
Sbjct: 64 VRQSQI 69
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 81.1 bits (200), Expect = 1e-21
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 10/96 (10%)
Query: 9 DSSQVLTEDT---DSFIIGDRVYV----GGTKSGRIAFIGETKFAPGDWAGVVLDDPVGK 61
+++Q L+E+ + +G R V + G + ++G T F PG W GV D+P+GK
Sbjct: 18 EAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGK 77
Query: 62 NDGQVGQARYFQCEPRFGLFAPVHKVSK---SPMSG 94
NDG V RYF+C+ ++G F V+ P SG
Sbjct: 78 NDGSVNGKRYFECQAKYGAFVKPSAVTVGDSGPSSG 113
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 71.8 bits (176), Expect = 3e-18
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 20 SFIIGDRVYV---GGTKSGRIAFIG--ETKFAPGDWAGVVLDDPVGKNDGQVGQARYFQC 74
I RV + +SG + F K + G + GV +D+P+G DG+ +
Sbjct: 9 PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68
Query: 75 E-PRFGLFAPVHKV---SKSPMSG 94
+ ++ + S P SG
Sbjct: 69 ACVESTILLHINDIIPESSGPSSG 92
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 67.6 bits (165), Expect = 1e-16
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 23 IGDRVYV-----GGTKSGRIAFIGETKFAP---GDWAGVVLDD---PVGKNDGQVGQARY 71
+G V V G + F G G + GV L + G DG +
Sbjct: 10 VGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQL 69
Query: 72 FQCEPRFGLFAPVHKVSK---SPMSG 94
FQC+ G+F + K+ P SG
Sbjct: 70 FQCDEDCGVFVALDKLELIESGPSSG 95
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.5 bits (56), Expect = 1.7
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 17 DTDSFIIGDRVYVGGTKSGRIAFI 40
++ DRVY+G + + I
Sbjct: 45 KGKQPLVMDRVYIGKGERDVVYKI 68
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176
{Shewanella oneidensis [TaxId: 70863]}
Length = 65
Score = 23.9 bits (52), Expect = 2.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 111 SRESITSNFSNVTTTSVKSN 130
SR+++ F+ SVKSN
Sbjct: 46 SRQAVAEQFAKALAQSVKSN 65
>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 189
Score = 24.8 bits (54), Expect = 4.0
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 34 SGRIAFIGETKFAPGD--------WAGVVLDDPVGKNDGQVGQARYFQCEPRFGLFAPVH 85
SGRI + + D + + + +H
Sbjct: 48 SGRITIVDAEMPWDRKNSTIIFKNHLRITEQDLEDVLSKNQVRRLWLIVQG-----PIIH 102
Query: 86 KVSKSPMSGTKRLSCAVHHGLRRSGSRESITSNFSNVTTTSVKSNLR 132
+K+ +G L A G + SG I + +++ +R
Sbjct: 103 IYAKNIETGWDILKIAREAGFKHSG----ILATNQKGVLVELRTGIR 145
>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of
bacteriophage procapsid {Bacteriophage phi-X174 [TaxId:
10847]}
Length = 138
Score = 24.2 bits (52), Expect = 4.4
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 14 LTEDTDSFIIGDRVYVGGTKS-----------GRIAFIGETKF-APGDWAGVVL 55
LTED F+ ++V++ +S G + F+G +F AP ++ V+
Sbjct: 23 LTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVI 76
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 24.0 bits (51), Expect = 6.1
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 13 VLTEDTDSFIIG-DRVYVGGTKSGRIAFIGETKF 45
++D DS + G R+ T +G+ G+ +
Sbjct: 168 SASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVY 201
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.400
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,860
Number of extensions: 20372
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 23
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.4 bits)