BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9802
         (92 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VOZ|A Chain A, Apo Futa2 From Synechocystis Pcc6803
 pdb|2VOZ|B Chain B, Apo Futa2 From Synechocystis Pcc6803
 pdb|2VP1|A Chain A, Fe-Futa2 From Synechocystis Pcc6803
 pdb|2VP1|B Chain B, Fe-Futa2 From Synechocystis Pcc6803
          Length = 346

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 43  EVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGFYIP 91
           EV+ ++++A EL + I S         ++LF +    LWR E  G + P
Sbjct: 56  EVNLIEASAEELIERIQSEGA--NSPGDILFTVDAGMLWRAEQAGLFQP 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,289,850
Number of Sequences: 62578
Number of extensions: 61445
Number of successful extensions: 230
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 2
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)