Query psy9802
Match_columns 92
No_of_seqs 100 out of 113
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:05:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396|consensus 99.5 1E-13 2.2E-18 113.2 6.7 69 11-79 1-77 (389)
2 PF01920 Prefoldin_2: Prefoldi 73.9 7.1 0.00015 24.9 4.0 50 17-66 51-100 (106)
3 PF14966 DNA_repr_REX1B: DNA r 73.3 17 0.00038 24.5 5.8 50 31-80 36-87 (97)
4 cd00632 Prefoldin_beta Prefold 71.3 23 0.00051 23.4 6.1 53 15-67 50-102 (105)
5 PRK00118 putative DNA-binding 68.6 9.2 0.0002 26.3 3.7 19 64-82 60-78 (104)
6 PF10372 YojJ: Bacterial membr 66.6 21 0.00046 23.2 4.9 48 28-75 10-57 (70)
7 TIGR02338 gimC_beta prefoldin, 64.3 37 0.00079 22.7 6.0 53 18-70 57-109 (110)
8 PRK09343 prefoldin subunit bet 60.4 53 0.0011 22.6 6.4 55 18-72 61-115 (121)
9 PF09903 DUF2130: Uncharacteri 54.0 55 0.0012 25.7 6.2 54 22-75 196-252 (267)
10 PF03670 UPF0184: Uncharacteri 53.2 43 0.00094 22.5 4.8 35 41-75 25-59 (83)
11 smart00030 CLb CLUSTERIN Beta 46.3 1.4E+02 0.0031 23.3 7.3 40 24-63 4-43 (206)
12 PF12674 Zn_ribbon_2: Putative 45.3 20 0.00044 23.4 2.2 16 64-79 66-81 (81)
13 COG4477 EzrA Negative regulato 44.3 1.5E+02 0.0032 26.4 7.7 61 23-83 374-437 (570)
14 PF01383 CpcD: CpcD/allophycoc 43.8 18 0.0004 22.1 1.7 20 18-38 26-45 (56)
15 PF05659 RPW8: Arabidopsis bro 43.0 78 0.0017 22.7 5.1 54 32-85 31-98 (147)
16 PF15011 CK2S: Casein Kinase 2 42.6 1.1E+02 0.0023 22.4 5.9 46 28-81 2-47 (168)
17 PF09182 PuR_N: Bacterial puri 42.4 57 0.0012 21.3 3.9 41 14-54 11-51 (70)
18 KOG3230|consensus 41.2 1.8E+02 0.0038 23.0 7.1 28 23-50 8-38 (224)
19 PF12896 Apc4: Anaphase-promot 41.0 98 0.0021 22.2 5.4 31 58-88 126-156 (210)
20 PF11986 PB1-F2: Influenza A P 40.8 17 0.00037 24.9 1.3 12 71-82 73-84 (90)
21 PF02183 HALZ: Homeobox associ 39.1 82 0.0018 18.5 4.7 20 18-37 6-25 (45)
22 PF11828 DUF3348: Protein of u 38.3 1.6E+02 0.0034 23.3 6.5 49 24-72 113-164 (244)
23 cd00890 Prefoldin Prefoldin is 37.2 1.2E+02 0.0026 19.8 5.7 49 19-74 78-126 (129)
24 PF08066 PMC2NT: PMC2NT (NUC01 36.5 1.2E+02 0.0026 19.7 4.9 27 31-57 20-47 (91)
25 PHA02047 phage lambda Rz1-like 36.1 1.5E+02 0.0032 20.8 5.4 47 26-72 43-98 (101)
26 PF09943 DUF2175: Uncharacteri 35.6 58 0.0013 22.7 3.3 31 23-53 69-100 (101)
27 cd00584 Prefoldin_alpha Prefol 35.2 1.4E+02 0.003 20.0 5.7 41 33-73 85-125 (129)
28 cd00238 ERp29c ERp29 and ERp38 34.9 1.4E+02 0.003 19.8 5.0 45 33-77 45-92 (93)
29 PF09730 BicD: Microtubule-ass 34.7 74 0.0016 28.7 4.6 24 38-61 275-298 (717)
30 PF06705 SF-assemblin: SF-asse 34.2 2E+02 0.0044 21.6 6.5 45 32-76 60-105 (247)
31 PRK00218 putative lysogenizati 34.2 82 0.0018 24.2 4.3 60 20-79 59-118 (207)
32 KOG3478|consensus 34.1 1.6E+02 0.0036 21.1 5.5 43 19-61 60-102 (120)
33 PF09575 Spore_SspJ: Small spo 33.7 95 0.0021 18.8 3.6 30 39-70 11-40 (46)
34 PF05190 MutS_IV: MutS family 32.3 40 0.00087 20.6 2.0 17 74-90 32-48 (92)
35 PF06148 COG2: COG (conserved 32.2 64 0.0014 22.0 3.1 37 20-56 72-108 (133)
36 PF13094 CENP-Q: CENP-Q, a CEN 32.1 1.8E+02 0.0039 20.4 6.0 40 36-75 28-67 (160)
37 TIGR02863 spore_sspJ small, ac 31.6 1.1E+02 0.0023 18.7 3.6 29 39-69 12-40 (47)
38 COG2915 Uncharacterized protei 31.3 1.1E+02 0.0025 23.8 4.6 61 18-78 57-117 (207)
39 TIGR00293 prefoldin, archaeal 31.1 1.6E+02 0.0035 19.5 5.3 43 31-73 82-124 (126)
40 TIGR00833 actII Transport prot 30.1 1.7E+02 0.0037 26.3 6.2 8 85-92 656-663 (910)
41 TIGR02449 conserved hypothetic 29.3 1.6E+02 0.0034 18.8 5.5 15 61-75 47-61 (65)
42 PF13801 Metal_resist: Heavy-m 29.3 1.4E+02 0.0031 18.4 5.8 46 30-75 54-99 (125)
43 PF05055 DUF677: Protein of un 29.1 2.4E+02 0.0051 23.0 6.4 52 22-73 216-270 (336)
44 PF07749 ERp29: Endoplasmic re 27.7 1.8E+02 0.0038 19.1 4.6 47 32-78 46-94 (95)
45 PF06320 GCN5L1: GCN5-like pro 27.7 2.1E+02 0.0046 19.8 5.8 23 35-57 47-69 (121)
46 PF04356 DUF489: Protein of un 27.6 1.5E+02 0.0032 22.6 4.6 61 19-79 52-112 (193)
47 TIGR00122 birA_repr_reg BirA b 27.4 85 0.0018 18.7 2.8 39 51-91 16-54 (69)
48 PHA03386 P10 fibrous body prot 27.2 2.2E+02 0.0047 19.7 5.4 43 33-75 10-55 (94)
49 KOG1728|consensus 26.5 23 0.0005 26.4 0.1 16 75-92 31-46 (156)
50 PF07439 DUF1515: Protein of u 24.8 2.6E+02 0.0056 19.9 5.1 14 74-87 72-85 (112)
51 PF05852 DUF848: Gammaherpesvi 24.7 2.9E+02 0.0062 20.3 5.8 57 18-76 32-102 (146)
52 PLN02839 nudix hydrolase 24.7 53 0.0011 27.5 1.9 28 62-89 153-180 (372)
53 PF02082 Rrf2: Transcriptional 24.2 1.1E+02 0.0023 19.1 2.9 42 50-91 27-68 (83)
54 PF03882 KicB: KicB killing fa 23.6 2.8E+02 0.0061 23.9 6.0 41 36-76 174-219 (440)
55 KOG0764|consensus 23.5 1.1E+02 0.0024 25.1 3.5 23 26-48 185-208 (299)
56 PF04977 DivIC: Septum formati 23.4 1.8E+02 0.0038 17.4 4.7 49 39-91 21-70 (80)
57 PF06160 EzrA: Septation ring 22.9 4.8E+02 0.01 22.3 7.6 58 23-80 371-431 (560)
58 PRK04778 septation ring format 22.8 4.8E+02 0.01 22.2 7.6 59 22-80 374-435 (569)
59 PF10154 DUF2362: Uncharacteri 22.3 77 0.0017 27.5 2.5 57 2-58 97-153 (510)
60 PF05418 Apo-VLDL-II: Apovitel 22.0 2.6E+02 0.0057 18.8 5.2 58 26-88 23-82 (82)
61 COG4066 Uncharacterized protei 21.9 2.5E+02 0.0055 21.2 4.9 41 38-78 43-90 (165)
62 PF05228 CHASE4: CHASE4 domain 21.8 1.4E+02 0.003 19.8 3.3 42 37-88 1-42 (161)
63 KOG2343|consensus 21.8 2E+02 0.0043 26.2 5.0 56 23-78 594-652 (689)
64 PF07889 DUF1664: Protein of u 21.5 3.1E+02 0.0067 19.5 6.3 29 30-58 38-66 (126)
65 PF04513 Baculo_PEP_C: Baculov 21.1 3.4E+02 0.0073 19.8 7.0 47 29-75 72-118 (140)
66 KOG4057|consensus 20.8 3.9E+02 0.0084 20.3 6.0 25 34-58 39-63 (180)
67 PRK05260 condesin subunit F; P 20.4 5E+02 0.011 22.5 6.9 58 19-76 157-219 (440)
68 PF07195 FliD_C: Flagellar hoo 20.3 3.7E+02 0.0081 20.0 6.3 40 34-73 192-238 (239)
No 1
>KOG0396|consensus
Probab=99.46 E-value=1e-13 Score=113.16 Aligned_cols=69 Identities=36% Similarity=0.513 Sum_probs=61.3
Q ss_pred cchhhhhhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhh------HH--HHHHHHHHHHhhhHhh
Q psy9802 11 YIFILCLEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS------AQ--VLAKNLEVLFILQRWK 79 (92)
Q Consensus 11 ~~~~l~LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~------~a--~Ldsl~srl~gLKR~~ 79 (92)
++.++.||||++|+|||+|+|.||++||+||||+++|...++++.+...+. ++ .+|.|+.|+|++||-.
T Consensus 1 ~~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~ 77 (389)
T KOG0396|consen 1 MTFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKL 77 (389)
T ss_pred CcchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999875542 11 5999999999999854
No 2
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=73.90 E-value=7.1 Score=24.92 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=41.7
Q ss_pred hhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q psy9802 17 LEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLA 66 (92)
Q Consensus 17 LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ld 66 (92)
.--.|++.|.+.+......-+..++.++..+.+..+.+.+.+....+.|.
T Consensus 51 vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 51 VGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999887665544443
No 3
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=73.27 E-value=17 Score=24.46 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=40.8
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhhhHhhh
Q psy9802 31 KKFRAVQKTIDREVSYVQSAANELEKTIA--SSAQVLAKNLEVLFILQRWKL 80 (92)
Q Consensus 31 K~FRs~QK~IErE~~~V~~~l~el~k~ls--~~~a~Ldsl~srl~gLKR~~~ 80 (92)
-.||+.=+.|..+++.+...+.++++.+. .+.+.+..++..+|..=|=||
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL 87 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKL 87 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 35777777899999999999999999987 445578999998888766665
No 4
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=71.30 E-value=23 Score=23.37 Aligned_cols=53 Identities=9% Similarity=0.176 Sum_probs=42.1
Q ss_pred hhhhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHH
Q psy9802 15 LCLEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAK 67 (92)
Q Consensus 15 l~LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Lds 67 (92)
...--.|+..|.+.+......-...++.++..+.+.+.++.+.++.-...|..
T Consensus 50 ~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 50 KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999988866655444443
No 5
>PRK00118 putative DNA-binding protein; Validated
Probab=68.61 E-value=9.2 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhhHhhhhh
Q psy9802 64 VLAKNLEVLFILQRWKLWR 82 (92)
Q Consensus 64 ~Ldsl~srl~gLKR~~~~~ 82 (92)
.|.+.+++|++++||+-|.
T Consensus 60 kLr~~~~~~~~~~~~~~~~ 78 (104)
T PRK00118 60 LLEDYEEKLHLYEKFIERN 78 (104)
T ss_pred HHHHHHHHHChHHHHHHHH
Confidence 6999999999999999885
No 6
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=66.64 E-value=21 Score=23.22 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=34.0
Q ss_pred HHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 28 ILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 28 ~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
.++...|..-+.|+.++..|..++++-..++-+.=+.|.+.+..++++
T Consensus 10 ~~K~~lk~~L~~I~~~~~~i~~~ld~~~~ClL~e~e~i~~~f~~~q~~ 57 (70)
T PF10372_consen 10 PLKEQLKQYLEQIEEEISQIIQTLDEDDCCLLCEFEEIREKFLDIQTL 57 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-TT--GGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCceechhHHHHHHHHHHHHHH
Confidence 466777777778888888888888777777777766788888888765
No 7
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=64.30 E-value=37 Score=22.73 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=41.4
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLE 70 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~s 70 (92)
---|++.+.+.+......-...+|..+..+......+.+.+......|..+++
T Consensus 57 G~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 57 GNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred chhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44577888999999988888889888888888888888877666556666553
No 8
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.44 E-value=53 Score=22.61 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=45.2
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVL 72 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl 72 (92)
-.-|++.|.+.++.+...-...|+-++..+.+....+.+.+......|..++...
T Consensus 61 G~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 61 GNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4558899999999999999999999998888888888887777666777777653
No 9
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=53.96 E-value=55 Score=25.72 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=40.3
Q ss_pred ccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhh
Q psy9802 22 LKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKT---IASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 22 LRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~---ls~~~a~Ldsl~srl~gL 75 (92)
++-=.+..-++|..+++.+++|...+..+.+.+.+. +.+++..|.....++.|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~~~~l~~~~~ki~~~ 252 (267)
T PF09903_consen 196 FRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSSTNNLRGANNKIAGL 252 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344457778899999999999999999999888775 334444666666666664
No 10
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=53.23 E-value=43 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 41 DREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 41 ErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
+.|+..|.+.+..+.++++.=.+.-|.+.++|+.|
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 57888888888888888776655555555555544
No 11
>smart00030 CLb CLUSTERIN Beta chain.
Probab=46.25 E-value=1.4e+02 Score=23.26 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=32.6
Q ss_pred ccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHH
Q psy9802 24 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQ 63 (92)
Q Consensus 24 VPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a 63 (92)
+|-+.|+.--....|.|++|+.+..++++++..-+...++
T Consensus 4 ~~~~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~e 43 (206)
T smart00030 4 VSDNELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNK 43 (206)
T ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 6778899888999999999999999999888765554433
No 12
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=45.27 E-value=20 Score=23.44 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhHhh
Q psy9802 64 VLAKNLEVLFILQRWK 79 (92)
Q Consensus 64 ~Ldsl~srl~gLKR~~ 79 (92)
+-.-+...|-.|||||
T Consensus 66 a~~~~~~~lp~LkRWk 81 (81)
T PF12674_consen 66 ARKMMPRYLPTLKRWK 81 (81)
T ss_pred HHHHHHHHccCCcccC
Confidence 5666778899999997
No 13
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=44.28 E-value=1.5e+02 Score=26.42 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=48.9
Q ss_pred cccHHHHhHHHHHhhhH---HHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhc
Q psy9802 23 KVPYEILNKKFRAVQKT---IDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLWRN 83 (92)
Q Consensus 23 RVPyE~LrK~FRs~QK~---IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~ 83 (92)
.+||-.|..++...++. |+.+-..+...+..+-|.=..+...|+-+.+++..+||.-.-+|
T Consensus 374 ~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~mek~n 437 (570)
T COG4477 374 EVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYMEKSN 437 (570)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58999999998777664 56788888888888877655555689999999999999876555
No 14
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=43.82 E-value=18 Score=22.10 Aligned_cols=20 Identities=20% Similarity=0.620 Sum_probs=16.0
Q ss_pred hcccccccHHHHhHHHHHhhh
Q psy9802 18 EHSTLKVPYEILNKKFRAVQK 38 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK 38 (92)
.+.++ ||||.|+..++..||
T Consensus 26 ~~~~~-Vpy~~ls~~~q~I~r 45 (56)
T PF01383_consen 26 NQTYV-VPYSQLSQEMQRINR 45 (56)
T ss_dssp EEEEE-EEHHHHHHHHHHHHH
T ss_pred eEEEE-EcHHHhHHHHHHHHH
Confidence 34455 999999999988776
No 15
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=42.99 E-value=78 Score=22.66 Aligned_cols=54 Identities=15% Similarity=0.371 Sum_probs=38.8
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHH---hhhh-HHH----------HHHHHHHHHhhhHhhhhhccC
Q psy9802 32 KFRAVQKTIDREVSYVQSAANELEKT---IASS-AQV----------LAKNLEVLFILQRWKLWRNEN 85 (92)
Q Consensus 32 ~FRs~QK~IErE~~~V~~~l~el~k~---ls~~-~a~----------Ldsl~srl~gLKR~~~~~~~~ 85 (92)
.||+.=+.++.-+..+...+.++.+. ++.. .+. =.+++++-..++||..|++-.
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~r~n~~kk~~ 98 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVRRWNLYKKPR 98 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHh
Confidence 47888888999999999999998763 3333 221 245677788889999887643
No 16
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=42.56 E-value=1.1e+02 Score=22.39 Aligned_cols=46 Identities=30% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhh
Q psy9802 28 ILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLW 81 (92)
Q Consensus 28 ~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~ 81 (92)
-||+.|+...+..++=-+.......-+. .+.+++++++-+...+..
T Consensus 2 ~lr~~f~~~~~~~~~W~~~~~~~~~~l~--------sl~nL~eqL~al~~~~~~ 47 (168)
T PF15011_consen 2 ALRKCFRKVEEQMEKWDSALSRCLPLLS--------SLANLAEQLQALQNVKNY 47 (168)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccc
Confidence 4677888777766654433333333322 456667777777766643
No 17
>PF09182 PuR_N: Bacterial purine repressor, N-terminal; InterPro: IPR015265 The N-terminal domain of the bacterial purine repressor PuR is a winged-helix domain, a subdivision of the HTH structural family. It consists of a canonical arrangement of secondary structures: a1-b1-a2-T-a3-b2-W-b3, where a2-T-a3 is the HTH motif, a3 is the recognition helix, and W is the wing. The domain allows for recognition of a conserved CGAA sequence in the centre of a DNA PurBox, resulting in binding to the major groove of DNA []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1O57_B 1P4A_D.
Probab=42.36 E-value=57 Score=21.33 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=32.8
Q ss_pred hhhhhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHH
Q psy9802 14 ILCLEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANEL 54 (92)
Q Consensus 14 ~l~LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el 54 (92)
..++|+|---+|.-.+-..|-+|.-+|--|+..|..++.+.
T Consensus 11 ~~L~~~P~~lisL~~Fae~f~~AKSsISEDl~iik~~~~~~ 51 (70)
T PF09182_consen 11 KYLLENPNKLISLTYFAERFGAAKSSISEDLSIIKETFEKE 51 (70)
T ss_dssp HHHHTSTT--EEHHHHHHHHT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCcceEcHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 35689999999999999999999999999999999888653
No 18
>KOG3230|consensus
Probab=41.17 E-value=1.8e+02 Score=22.96 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.9
Q ss_pred cccHHHHhHHHHH---hhhHHHHhHHHHHHH
Q psy9802 23 KVPYEILNKKFRA---VQKTIDREVSYVQSA 50 (92)
Q Consensus 23 RVPyE~LrK~FRs---~QK~IErE~~~V~~~ 50 (92)
..|-|.||++-|. ++|-+|||...+...
T Consensus 8 ~tp~e~Lr~nqRal~~a~ReleRer~~le~q 38 (224)
T KOG3230|consen 8 KTPAELLRENQRALNKATRELERERQKLELQ 38 (224)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999885 778899999887654
No 19
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=40.99 E-value=98 Score=22.21 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHhhhHhhhhhccCCcc
Q psy9802 58 IASSAQVLAKNLEVLFILQRWKLWRNENLGF 88 (92)
Q Consensus 58 ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~ 88 (92)
+..+-+.+-=.+++++|+-||.-++.+.+|+
T Consensus 126 l~pa~erl~~~l~~L~Gl~~~~~~~~~~lgl 156 (210)
T PF12896_consen 126 LIPALERLIVLLSELRGLSRWSQDRFSGLGL 156 (210)
T ss_pred HHHHHHHHHHHHHHHhCccccccccccccCC
Confidence 3344446777889999999998776666664
No 20
>PF11986 PB1-F2: Influenza A Proapoptotic protein; InterPro: IPR021045 PB1-F2 is a protein found in almost all known strains of Influenza A virus - a negative sense ssRNA Orthomyxovirus []. It originates from translation of the viral polymerase gene in an alternative reading frame []. PB1-F2 consists of two independent structural domains, two closely neighbouring short helices at the N terminus, and an extended C-terminal helix []. Although the protein has originally been described to induce apoptosis, it has now been shown that PB1-F2 more likely acts as an apoptosis promoter in concert with other apoptosis-inducing agents []. PB1-F2 promotes apoptosis by localising to the mitochondria where it destabilises the membrane. This will cause release of cytochrome C which activates the caspase cascade of apoptosis through the endogenous pathway []. In this way it acts like the Bcl-2 protein family which are physiological apoptotic regulators in cells [].; PDB: 2HN8_A 3BUY_C.
Probab=40.83 E-value=17 Score=24.85 Aligned_cols=12 Identities=42% Similarity=0.971 Sum_probs=9.8
Q ss_pred HHHhhhHhhhhh
Q psy9802 71 VLFILQRWKLWR 82 (92)
Q Consensus 71 rl~gLKR~~~~~ 82 (92)
|-+.|||||+..
T Consensus 73 kt~vLkrWklfs 84 (90)
T PF11986_consen 73 KTHVLKRWKLFS 84 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 567899999864
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.14 E-value=82 Score=18.54 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=11.1
Q ss_pred hcccccccHHHHhHHHHHhh
Q psy9802 18 EHSTLKVPYEILNKKFRAVQ 37 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~Q 37 (92)
|+-.||--||.|+..|.+-+
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655433
No 22
>PF11828 DUF3348: Protein of unknown function (DUF3348); InterPro: IPR021783 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 244 to 323 amino acids in length.
Probab=38.33 E-value=1.6e+02 Score=23.30 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=37.7
Q ss_pred ccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHH---HHHHHHHHH
Q psy9802 24 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQ---VLAKNLEVL 72 (92)
Q Consensus 24 VPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a---~Ldsl~srl 72 (92)
.-|.-+++.|=.-|+.+|..+..+-.-+.+.-.+.+.+-+ .||.+++++
T Consensus 113 ~d~a~yrqrYlalQq~Me~~ig~LR~rlR~~La~~sp~larLA~lDAvmE~~ 164 (244)
T PF11828_consen 113 ADYAPYRQRYLALQQAMETAIGQLRGRLRQALAARSPALARLAALDAVMEQA 164 (244)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999988887766554444 455555544
No 23
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.24 E-value=1.2e+02 Score=19.83 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=25.6
Q ss_pred cccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Q psy9802 19 HSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFI 74 (92)
Q Consensus 19 ~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~g 74 (92)
-.++..+.+... +.+++....+.+.+.++.+.++.-.+.++.+-..|+.
T Consensus 78 ~~~ve~~~~eA~-------~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 78 GVYVEKSLEEAI-------EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred CEEEEecHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555554 5555555555555555555444443345555444443
No 24
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=36.54 E-value=1.2e+02 Score=19.66 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.4
Q ss_pred HHH-HHhhhHHHHhHHHHHHHHHHHHHH
Q psy9802 31 KKF-RAVQKTIDREVSYVQSAANELEKT 57 (92)
Q Consensus 31 K~F-Rs~QK~IErE~~~V~~~l~el~k~ 57 (92)
++| ....+.++.....|...++.+.+.
T Consensus 20 ~s~dp~f~~~ld~~s~rll~l~n~ll~~ 47 (91)
T PF08066_consen 20 RSFDPEFAESLDEQSQRLLSLINSLLKS 47 (91)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345 677788899999999999888774
No 25
>PHA02047 phage lambda Rz1-like protein
Probab=36.12 E-value=1.5e+02 Score=20.82 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHH
Q psy9802 26 YEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS---------AQVLAKNLEVL 72 (92)
Q Consensus 26 yE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~---------~a~Ldsl~srl 72 (92)
.|.++..+++.|+.+++=-..-++.-+|+...+.+. +++.|++-.|+
T Consensus 43 LE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPpaV~~~Lck~l 98 (101)
T PHA02047 43 LEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPPAVVDSLCKRL 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHHHHHHHHh
Confidence 478888899999888876666666666776665522 22566666554
No 26
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=35.64 E-value=58 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=23.0
Q ss_pred cccH-HHHhHHHHHhhhHHHHhHHHHHHHHHH
Q psy9802 23 KVPY-EILNKKFRAVQKTIDREVSYVQSAANE 53 (92)
Q Consensus 23 RVPy-E~LrK~FRs~QK~IErE~~~V~~~l~e 53 (92)
+++= |.+++..+...|.+|+.++.+++-+.+
T Consensus 69 ~~~~~ee~k~~~~q~rK~~Ek~Aa~LT~~i~~ 100 (101)
T PF09943_consen 69 RLAESEEVKKVLRQVRKDLEKNAAKLTRKIEK 100 (101)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444 888888888888888888887776543
No 27
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.24 E-value=1.4e+02 Score=19.98 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=23.5
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy9802 33 FRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLF 73 (92)
Q Consensus 33 FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~ 73 (92)
+..|.+.+++-...+...++++.+.+..-.+.++.+...++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666655544445555555544
No 28
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=34.92 E-value=1.4e+02 Score=19.83 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhhhH
Q psy9802 33 FRAVQKTIDREVSYVQSAANELEKTIAS---SAQVLAKNLEVLFILQR 77 (92)
Q Consensus 33 FRs~QK~IErE~~~V~~~l~el~k~ls~---~~a~Ldsl~srl~gLKR 77 (92)
-+...|.+++....|.+-++-+.+-+.+ +.+..|.+..|+..|..
T Consensus 45 ~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NIL~~ 92 (93)
T cd00238 45 VKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRLNILRS 92 (93)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 3445555666666666666666555554 23378888888888763
No 29
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.70 E-value=74 Score=28.72 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=15.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHhhhh
Q psy9802 38 KTIDREVSYVQSAANELEKTIASS 61 (92)
Q Consensus 38 K~IErE~~~V~~~l~el~k~ls~~ 61 (92)
.++|+|-+.+.+.+.+..+.+..+
T Consensus 275 ~qve~EK~~L~~~L~e~Q~qLe~a 298 (717)
T PF09730_consen 275 LQVEREKSSLLSNLQESQKQLEHA 298 (717)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777776655433
No 30
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=34.20 E-value=2e+02 Score=21.59 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhh
Q psy9802 32 KFRAVQKTIDREVSYVQSAANELEKTIA-SSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 32 ~FRs~QK~IErE~~~V~~~l~el~k~ls-~~~a~Ldsl~srl~gLK 76 (92)
.++..|+.+|..+..+...+........ +-...++++.+|+..|.
T Consensus 60 ~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~ 105 (247)
T PF06705_consen 60 SNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALE 105 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766665544322 22236888888887774
No 31
>PRK00218 putative lysogenization regulator; Reviewed
Probab=34.16 E-value=82 Score=24.23 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred ccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhh
Q psy9802 20 STLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWK 79 (92)
Q Consensus 20 plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~ 79 (92)
.-|+.=++.|...+-.....-+.|+..-.-++=.+++++++..+.++.+-+|++.++|=.
T Consensus 59 ~~L~~Gl~~L~~~L~~~~~~~~~el~RY~~~ll~LErkL~k~~~~~~~L~~ri~~~~rQ~ 118 (207)
T PRK00218 59 ANLRLGLETLLNQLNSSRQGLDAELTRYALSLLALERKLSKNPDALNTLGERINQIQRQL 118 (207)
T ss_pred HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 347888888888886443444889988888889999999999999999999999998853
No 32
>KOG3478|consensus
Probab=34.14 E-value=1.6e+02 Score=21.13 Aligned_cols=43 Identities=9% Similarity=0.120 Sum_probs=35.9
Q ss_pred cccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhh
Q psy9802 19 HSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS 61 (92)
Q Consensus 19 ~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~ 61 (92)
--++|...|..|-+.+.----|++|+..+.+++.+..+.+...
T Consensus 60 pvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 60 PVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred chhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999988888889999999999999988865544
No 33
>PF09575 Spore_SspJ: Small spore protein J (Spore_SspJ); InterPro: IPR014220 This entry represents a group of small acid-soluble proteins (SASP) from Bacillus species, which are present in spores but not in growing cells. The sspJ gene is transcribed in the forespore compartment by RNA polymerase with the forespore-specific sigmaG. Loss of SspJ causes a slight decrease in the rate of spore outgrowth in an otherwise wild-type background [].
Probab=33.74 E-value=95 Score=18.83 Aligned_cols=30 Identities=17% Similarity=0.320 Sum_probs=23.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9802 39 TIDREVSYVQSAANELEKTIASSAQVLAKNLE 70 (92)
Q Consensus 39 ~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~s 70 (92)
.-|++...|..++.|..+++.++ -|...+.
T Consensus 11 ~seK~~n~v~gaLedA~~aLk~D--PLQEAVq 40 (46)
T PF09575_consen 11 NSEKDKNVVQGALEDASKALKGD--PLQEAVQ 40 (46)
T ss_pred cchhhHHHHHHHHHHHHHHhcCC--hHHHHHH
Confidence 45889999999999999888877 4444443
No 34
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=32.33 E-value=40 Score=20.61 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=13.2
Q ss_pred hhhHhhhhhccCCcccc
Q psy9802 74 ILQRWKLWRNENLGFYI 90 (92)
Q Consensus 74 gLKR~~~~~~~~~~~~~ 90 (92)
+++.+++..+.+.||+|
T Consensus 32 ~~~~lk~~~~~~~gy~i 48 (92)
T PF05190_consen 32 GIPSLKLVYIPKRGYLI 48 (92)
T ss_dssp T-TTBEEEEETTTEEEE
T ss_pred CCCcEEEEEcCceEEEE
Confidence 44778888888999986
No 35
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=32.24 E-value=64 Score=21.99 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=25.4
Q ss_pred ccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHH
Q psy9802 20 STLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEK 56 (92)
Q Consensus 20 plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k 56 (92)
.-++.|...+++...+.+..|+.....|...+++...
T Consensus 72 ~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~ 108 (133)
T PF06148_consen 72 EELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKE 108 (133)
T ss_dssp --HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888777777777777766543
No 36
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.08 E-value=1.8e+02 Score=20.37 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 36 VQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 36 ~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
.++.+|+-++....++..|..-+....+.+.+.-+.++.|
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~L 67 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQEL 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666665554444444444444444
No 37
>TIGR02863 spore_sspJ small, acid-soluble spore protein, SspJ family. RL J Bacteriol. 1998 Dec;180(24):6704-12.
Probab=31.64 E-value=1.1e+02 Score=18.70 Aligned_cols=29 Identities=10% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9802 39 TIDREVSYVQSAANELEKTIASSAQVLAKNL 69 (92)
Q Consensus 39 ~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~ 69 (92)
.-|++-..|..++.|..+++.++ -|...+
T Consensus 12 ~seKd~n~v~gaLEdAg~aLk~D--PLQEAV 40 (47)
T TIGR02863 12 KSEKDKNAIQGALEDAGQALKDD--PLQEAV 40 (47)
T ss_pred chhhhHHHHHHHHHHHHHHhcCC--hHHHHH
Confidence 34889999999999999888877 444444
No 38
>COG2915 Uncharacterized protein involved in purine metabolism [General function prediction only]
Probab=31.27 E-value=1.1e+02 Score=23.80 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHh
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRW 78 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~ 78 (92)
+-.-||+-.|.|-..|-..-+....|...-.-++=.+++.++++..+++++-.|++.+.|=
T Consensus 57 ~~~nL~~GLe~L~~~l~~~~~~~~~el~RY~lslm~LErkL~k~~~a~~~lg~rI~~~~~Q 117 (207)
T COG2915 57 HERNLKLGLETLLSVLNASSRGLNAELTRYALSLMALERKLSKDKDALDTLGNRISQLERQ 117 (207)
T ss_pred hHHHHHHHHHHHHHHHccCCcchhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 3445688888888887766667888888888888899999999988999999999998863
No 39
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.09 E-value=1.6e+02 Score=19.55 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy9802 31 KKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLF 73 (92)
Q Consensus 31 K~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~ 73 (92)
+.+-.|.+.+++....+...+..+.+.+..-...++.+.++|+
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777776655544445555555554
No 40
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=30.08 E-value=1.7e+02 Score=26.31 Aligned_cols=8 Identities=38% Similarity=0.957 Sum_probs=6.1
Q ss_pred CCccccCC
Q psy9802 85 NLGFYIPR 92 (92)
Q Consensus 85 ~~~~~~~~ 92 (92)
|.|||||.
T Consensus 656 ~~~f~~p~ 663 (910)
T TIGR00833 656 GVDFYAPP 663 (910)
T ss_pred cCCcccCh
Confidence 46799994
No 41
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.32 E-value=1.6e+02 Score=18.85 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHhh
Q psy9802 61 SAQVLAKNLEVLFIL 75 (92)
Q Consensus 61 ~~a~Ldsl~srl~gL 75 (92)
+...+++|++|+..|
T Consensus 47 Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 47 ARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHhhhhh
Confidence 333799999999865
No 42
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=29.30 E-value=1.4e+02 Score=18.41 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=20.2
Q ss_pred hHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 30 NKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 30 rK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
...|+..-+.+..++......+.++..+-.-+.+.++.+++++..+
T Consensus 54 ~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~ 99 (125)
T PF13801_consen 54 MDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREA 99 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3334433334444444433333333322223334677777766654
No 43
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=29.13 E-value=2.4e+02 Score=23.03 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=34.1
Q ss_pred ccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHH
Q psy9802 22 LKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKT---IASSAQVLAKNLEVLF 73 (92)
Q Consensus 22 LRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~---ls~~~a~Ldsl~srl~ 73 (92)
+-+|+....|-+.+..+.=++....+...++.++++ +.++-..++.+++||.
T Consensus 216 ~a~P~~~~gkw~~~~~~k~~~al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~ 270 (336)
T PF05055_consen 216 LAAPIGSVGKWCGSLWKKYEEALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLE 270 (336)
T ss_pred HccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHH
Confidence 347888887666666666666666667777777776 3455555666676664
No 44
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=27.74 E-value=1.8e+02 Score=19.15 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHhhhHHHHhHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHhhhHh
Q psy9802 32 KFRAVQKTIDREVSYVQSAANELEKTIASS--AQVLAKNLEVLFILQRW 78 (92)
Q Consensus 32 ~FRs~QK~IErE~~~V~~~l~el~k~ls~~--~a~Ldsl~srl~gLKR~ 78 (92)
.-+...|.+++.-..|.+.++-+.+-+.+. ....|.+..|+..|+..
T Consensus 46 Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K~del~~R~NIL~~F 94 (95)
T PF07749_consen 46 YVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEKKDELQKRLNILSSF 94 (95)
T ss_dssp HHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHc
Confidence 334555566655555555555555443322 22799999999988753
No 45
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=27.66 E-value=2.1e+02 Score=19.83 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.7
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHH
Q psy9802 35 AVQKTIDREVSYVQSAANELEKT 57 (92)
Q Consensus 35 s~QK~IErE~~~V~~~l~el~k~ 57 (92)
..||.||+|...+...+..+.+.
T Consensus 47 ~Nqk~ie~e~k~L~~~~~~l~kq 69 (121)
T PF06320_consen 47 ENQKKIEKEAKQLQRNTAKLAKQ 69 (121)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888887777664
No 46
>PF04356 DUF489: Protein of unknown function (DUF489); InterPro: IPR007451 Protein of unknown function, cotranscribed with purB in Escherichia coli, but with function unrelated to purine biosynthesis [].; PDB: 1QZ4_A 1SDI_A.
Probab=27.55 E-value=1.5e+02 Score=22.65 Aligned_cols=61 Identities=15% Similarity=0.136 Sum_probs=50.0
Q ss_pred cccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhh
Q psy9802 19 HSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWK 79 (92)
Q Consensus 19 ~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~ 79 (92)
..-|++=++.|...+-.....-+.|+..-.-++=.+++++++.++.++.+-+|+..++|=.
T Consensus 52 ~~~L~~Gl~~L~~~L~~~~~~~~~e~~RY~~~ll~LErkL~k~~~~l~~l~~ri~~~~~Q~ 112 (193)
T PF04356_consen 52 LENLRLGLRTLVDQLGGDSSPKDAELTRYALGLLHLERKLSKNPDMLQQLGQRIEQAQRQA 112 (193)
T ss_dssp -GGGHHHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHCcCCCCcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3377888999998888777778888888888888999999988889999999999888753
No 47
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=27.45 E-value=85 Score=18.75 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCccccC
Q psy9802 51 ANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGFYIP 91 (92)
Q Consensus 51 l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~~~~ 91 (92)
.++++..+.-+.+.+...+.+|+. ..+..... +.||+++
T Consensus 16 ~~eLa~~l~vS~~tv~~~l~~L~~-~g~~i~~~-~~g~~l~ 54 (69)
T TIGR00122 16 GEKLGEALGMSRTAVNKHIQTLRE-WGVDVLTV-GKGYRLP 54 (69)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-CCCeEEec-CCceEec
Confidence 566666665555556666666644 23433444 7788775
No 48
>PHA03386 P10 fibrous body protein; Provisional
Probab=27.19 E-value=2.2e+02 Score=19.73 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHhhhHHHHhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhh
Q psy9802 33 FRAVQKTIDREVSYVQSAANELEKT---IASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 33 FRs~QK~IErE~~~V~~~l~el~k~---ls~~~a~Ldsl~srl~gL 75 (92)
.|.+-+.++--+.+++.+++++... +++.++.|+++.+++...
T Consensus 10 Ir~dIkavd~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l~tkV~~I 55 (94)
T PHA03386 10 ILDAVQEVDTKVDALQTQLNGLEEDSQPLDGLPAQLTELDTKVSDI 55 (94)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 5778888999999999999999763 556666677777766654
No 49
>KOG1728|consensus
Probab=26.50 E-value=23 Score=26.40 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=12.6
Q ss_pred hhHhhhhhccCCccccCC
Q psy9802 75 LQRWKLWRNENLGFYIPR 92 (92)
Q Consensus 75 LKR~~~~~~~~~~~~~~~ 92 (92)
.+|| |+|++|||--|+
T Consensus 31 ~~r~--~~~iglGFKtP~ 46 (156)
T KOG1728|consen 31 GKRR--YKNIGLGFKTPR 46 (156)
T ss_pred cchh--hhhcCcccCChH
Confidence 5565 789999998774
No 50
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=24.75 E-value=2.6e+02 Score=19.93 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=8.9
Q ss_pred hhhHhhhhhccCCc
Q psy9802 74 ILQRWKLWRNENLG 87 (92)
Q Consensus 74 gLKR~~~~~~~~~~ 87 (92)
.+||||+---..||
T Consensus 72 dV~rwklmG~GaLg 85 (112)
T PF07439_consen 72 DVKRWKLMGMGALG 85 (112)
T ss_pred HHHHHHHhccchhh
Confidence 35788886555544
No 51
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=24.72 E-value=2.9e+02 Score=20.30 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=31.5
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhh----------hhHH----HHHHHHHHHHhhh
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIA----------SSAQ----VLAKNLEVLFILQ 76 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls----------~~~a----~Ldsl~srl~gLK 76 (92)
.+++++--|+.-++.-|..++. ++...+.+.+..+...++ +.+- .++++.+++..||
T Consensus 32 ~~~LF~~Qf~~t~~~~r~~~~~--r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLk 102 (146)
T PF05852_consen 32 SSSLFRAQFQFTKKSLRSHNSL--REECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELK 102 (146)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 5677777788888888777653 222223333333322222 1111 4777778777776
No 52
>PLN02839 nudix hydrolase
Probab=24.71 E-value=53 Score=27.51 Aligned_cols=28 Identities=18% Similarity=-0.019 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhHhhhhhccCCccc
Q psy9802 62 AQVLAKNLEVLFILQRWKLWRNENLGFY 89 (92)
Q Consensus 62 ~a~Ldsl~srl~gLKR~~~~~~~~~~~~ 89 (92)
+++|++++..++.-.-++-||||..-.|
T Consensus 153 t~al~~v~~~lr~~g~~~gWRnE~y~V~ 180 (372)
T PLN02839 153 TRAVADVIKILGDKGIIPGIRNELYPVK 180 (372)
T ss_pred HHHHHHHHHHHHHcCCCCCcccCccccc
Confidence 3378899999988777899999987665
No 53
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=24.21 E-value=1.1e+02 Score=19.11 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCccccC
Q psy9802 50 AANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGFYIP 91 (92)
Q Consensus 50 ~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~~~~ 91 (92)
+++++++.+.-+...+.+++++|..-.=++-.+..+-||++.
T Consensus 27 s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~ 68 (83)
T PF02082_consen 27 SSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLA 68 (83)
T ss_dssp EHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEES
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeec
Confidence 345666665555556777777766544355555666677653
No 54
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=23.56 E-value=2.8e+02 Score=23.95 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=0.0
Q ss_pred hhhHHHHhHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHhhh
Q psy9802 36 VQKTIDREVSYVQSAANELEKT-----IASSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 36 ~QK~IErE~~~V~~~l~el~k~-----ls~~~a~Ldsl~srl~gLK 76 (92)
.||.+|..-..|+..++++.+. +++|...|+.....||.|+
T Consensus 174 ~QR~MDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LL~EtsgtLRELq 219 (440)
T PF03882_consen 174 NQRAMDEQQQSVKEEIAALLNQDWRAAIQSCEQLLDETSGTLRELQ 219 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHhhHHHHH
No 55
>KOG0764|consensus
Probab=23.50 E-value=1.1e+02 Score=25.09 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHhHHH-HHhhhHHHHhHHHHH
Q psy9802 26 YEILNKKF-RAVQKTIDREVSYVQ 48 (92)
Q Consensus 26 yE~LrK~F-Rs~QK~IErE~~~V~ 48 (92)
||.|+..+ |..-+..|--++++.
T Consensus 185 YE~lK~~~~~~~~~~~d~~l~n~~ 208 (299)
T KOG0764|consen 185 YEELKLRKNRKQGRSTDNHLSNLD 208 (299)
T ss_pred HHHHHHHHHHhcCCCcccchhhHH
Confidence 99999888 555555554333333
No 56
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.43 E-value=1.8e+02 Score=17.39 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhhhHhhhhhccCCccccC
Q psy9802 39 TIDREVSYVQSAANELEKTIASSAQVLAKNLEVL-FILQRWKLWRNENLGFYIP 91 (92)
Q Consensus 39 ~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl-~gLKR~~~~~~~~~~~~~~ 91 (92)
.+..++..+.+.++++.+ ....|..-++++ ..-..+...-.+.+|+.-|
T Consensus 21 ~~~~ei~~l~~~i~~l~~----e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~ 70 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKK----ENEELKEEIERLKNDPDYIEKVAREKLGMVKP 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCC
Confidence 344455555555444432 222345555555 4455555555555665444
No 57
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.92 E-value=4.8e+02 Score=22.28 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred cccHHHHhHHHHHhhhHH---HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhh
Q psy9802 23 KVPYEILNKKFRAVQKTI---DREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKL 80 (92)
Q Consensus 23 RVPyE~LrK~FRs~QK~I---ErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~ 80 (92)
.+||-.+...++...+.+ +.+...+...+..+-+.=..+...|+.+-..|+..||---
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888877666554 3444444444444444333333479999999999999643
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.83 E-value=4.8e+02 Score=22.22 Aligned_cols=59 Identities=17% Similarity=0.275 Sum_probs=40.6
Q ss_pred ccccHHHHhHHHHHhhh---HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhh
Q psy9802 22 LKVPYEILNKKFRAVQK---TIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKL 80 (92)
Q Consensus 22 LRVPyE~LrK~FRs~QK---~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~ 80 (92)
-.+||+.+...+....+ .|+.+...+...+.++.+.-..+...|+.+-..+.++||.-.
T Consensus 374 ~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~ 435 (569)
T PRK04778 374 QEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435 (569)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888887765443 456677777777776666544444468888888888887543
No 59
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=22.32 E-value=77 Score=27.53 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=44.6
Q ss_pred hhhhhhcCCcchhhhhhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHh
Q psy9802 2 FQALYISHDYIFILCLEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTI 58 (92)
Q Consensus 2 ~~~~~~s~~~~~~l~LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~l 58 (92)
|..|-+|+.++.++.||+-.-+.=-|+++..=..-++.-++-...+..++..+...+
T Consensus 97 yH~LiHSpaletLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~~l 153 (510)
T PF10154_consen 97 YHQLIHSPALETLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGISL 153 (510)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 556677888899999999988888888888877777777777777777777765543
No 60
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=21.97 E-value=2.6e+02 Score=18.84 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=32.2
Q ss_pred HHHHhHHH-HHhhhHHHHhHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCcc
Q psy9802 26 YEILNKKF-RAVQKTIDREVSYVQSAANE-LEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGF 88 (92)
Q Consensus 26 yE~LrK~F-Rs~QK~IErE~~~V~~~l~e-l~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~ 88 (92)
||..||-+ |.+|..+|---.-|..+... +.+..+.-+--...|++++.+| |-..-||+
T Consensus 23 YEavNkvsPr~~qfL~d~~Q~~vv~g~Rn~lirEt~k~sil~Eql~EKik~l-----w~tkVlgy 82 (82)
T PF05418_consen 23 YEAVNKVSPRVGQFLLDASQTPVVVGTRNFLIRETSKLSILAEQLVEKIKSL-----WYTKVLGY 82 (82)
T ss_pred HHHHHccChhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhccC
Confidence 78888765 78888887655444443332 2222222211356777777764 55555553
No 61
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.94 E-value=2.5e+02 Score=21.18 Aligned_cols=41 Identities=10% Similarity=0.195 Sum_probs=33.2
Q ss_pred hHHHHhHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHhhhHh
Q psy9802 38 KTIDREVSYVQSAANELEKT-------IASSAQVLAKNLEVLFILQRW 78 (92)
Q Consensus 38 K~IErE~~~V~~~l~el~k~-------ls~~~a~Ldsl~srl~gLKR~ 78 (92)
.-||.=+..+.+.++++-+. -++..+.+|.+++++..+|+.
T Consensus 43 ~yvea~m~al~~rindir~~~~~~~~d~eg~~E~~D~~l~~~~~~k~~ 90 (165)
T COG4066 43 HYVEAMMKALIERINDIRKKSVDEIQDEEGDEEKLDEMLNRIERFKKY 90 (165)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcccCcccCHHHHHHHHHHHHHHHhc
Confidence 45788888999999998765 345555899999999999987
No 62
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=21.80 E-value=1.4e+02 Score=19.85 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=27.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCcc
Q psy9802 37 QKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGF 88 (92)
Q Consensus 37 QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~ 88 (92)
|+.|+.+..++...+.+-+ +=|....-+++ +-.-|-.+|+|-
T Consensus 1 q~ai~~~~~~l~~~~~d~a--------~WDdty~~~~~--~~~~~~~~N~~~ 42 (161)
T PF05228_consen 1 QRAIQNELQQLERIAKDWA--------VWDDTYDFVQD--PDPDWIDENLGP 42 (161)
T ss_pred ChHHHHHHHHHHHHhhhhc--------hHHHHHHHHHh--cCHHHHHHhcCh
Confidence 6778888888877776655 45555666666 333566677663
No 63
>KOG2343|consensus
Probab=21.80 E-value=2e+02 Score=26.17 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred cccHHHHhHHHHHhhh---HHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHh
Q psy9802 23 KVPYEILNKKFRAVQK---TIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRW 78 (92)
Q Consensus 23 RVPyE~LrK~FRs~QK---~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~ 78 (92)
.+-||.....+++.|+ .||-+...+++.++++..++.+..-....+-.-+..+|+|
T Consensus 594 ~~~Ye~Fk~~~~~~q~~~~~ieel~~~aqk~f~~ak~~L~ni~n~~~E~~~llkva~~N 652 (689)
T KOG2343|consen 594 PVSYEQFKGHSDIRQRDLGSIEELFATAQKSFDEAKNGLENIDNKGEEQNQLLKVAKTN 652 (689)
T ss_pred CccHHHHhhhhHHhhccccchHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhhh
Confidence 4669999999999999 8999999999999888776554322222333334444444
No 64
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.51 E-value=3.1e+02 Score=19.49 Aligned_cols=29 Identities=7% Similarity=0.261 Sum_probs=20.6
Q ss_pred hHHHHHhhhHHHHhHHHHHHHHHHHHHHh
Q psy9802 30 NKKFRAVQKTIDREVSYVQSAANELEKTI 58 (92)
Q Consensus 30 rK~FRs~QK~IErE~~~V~~~l~el~k~l 58 (92)
||++..|=..|-+.+.+|..+++.+-+-+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhL 66 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHL 66 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777665543
No 65
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=21.07 E-value=3.4e+02 Score=19.79 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=36.2
Q ss_pred HhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 29 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 29 LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
|....=+-|..+.-|+..+.+.++.+.+++.+-.+.|..++..+.++
T Consensus 72 L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~aln~l 118 (140)
T PF04513_consen 72 LNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQALNNL 118 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44555566778888888888888888888887777788888777765
No 66
>KOG4057|consensus
Probab=20.75 E-value=3.9e+02 Score=20.35 Aligned_cols=25 Identities=8% Similarity=0.369 Sum_probs=15.5
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHh
Q psy9802 34 RAVQKTIDREVSYVQSAANELEKTI 58 (92)
Q Consensus 34 Rs~QK~IErE~~~V~~~l~el~k~l 58 (92)
++.+|.+|+...+..+++..++..+
T Consensus 39 K~~~kn~e~qa~~F~ksit~VE~eL 63 (180)
T KOG4057|consen 39 KQIGKNMEDQANNFKKSITQVENEL 63 (180)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665543
No 67
>PRK05260 condesin subunit F; Provisional
Probab=20.41 E-value=5e+02 Score=22.46 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred cccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHhhh
Q psy9802 19 HSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEK-----TIASSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 19 ~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k-----~ls~~~a~Ldsl~srl~gLK 76 (92)
.+-||.....+=-..=-.|+.++-.-.+|+..++++.+ ++++|..-||.....++.|+
T Consensus 157 ~a~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LLdEtsgtLRELq 219 (440)
T PRK05260 157 FAPLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQ 219 (440)
T ss_pred HhcCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
No 68
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.30 E-value=3.7e+02 Score=19.98 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHhhhHHHHhHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHH
Q psy9802 34 RAVQKTIDREVSYVQSAANELEKTIASSAQ-------VLAKNLEVLF 73 (92)
Q Consensus 34 Rs~QK~IErE~~~V~~~l~el~k~ls~~~a-------~Ldsl~srl~ 73 (92)
.+.+..+++++..+.+.+.++...+..-.+ .+++++++|+
T Consensus 192 ~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ln 238 (239)
T PF07195_consen 192 TSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQLN 238 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666665554433 5777777664
Done!