Query psy9802
Match_columns 92
No_of_seqs 100 out of 113
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:05:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gwk_C SAG1039, putative uncha 79.8 7.7 0.00026 23.5 6.2 39 21-59 5-46 (98)
2 2jo8_A Serine/threonine-protei 78.8 2.6 8.7E-05 25.3 3.6 32 18-49 3-35 (51)
3 4ioe_A Secreted protein ESXB; 77.3 8.6 0.00029 22.9 5.8 41 21-61 6-49 (93)
4 3zbh_A ESXA; unknown function, 69.8 15 0.00051 21.8 7.2 41 21-61 6-49 (99)
5 3lay_A Zinc resistance-associa 67.6 15 0.00051 26.2 6.0 52 25-76 75-126 (175)
6 2zqm_A Prefoldin beta subunit 64.5 24 0.00081 22.2 6.3 52 18-69 60-111 (117)
7 2hn8_A Protein PB1-F2; Pro-apo 63.0 3.2 0.00011 23.6 1.3 13 70-82 23-35 (38)
8 3kpe_A Fusion glycoprotein F0; 60.8 22 0.00075 21.1 4.9 35 40-74 2-39 (51)
9 3hrn_A Transient receptor pote 57.7 17 0.00058 22.6 4.2 42 46-87 10-51 (64)
10 1sdi_A ORF-23, hypothetical pr 52.0 18 0.00063 26.8 4.3 61 18-78 58-119 (213)
11 1fxk_A Prefoldin; archaeal pro 50.6 30 0.001 21.3 4.6 44 18-61 55-98 (107)
12 2vs0_A Virulence factor ESXA; 49.0 39 0.0013 19.8 6.2 38 22-59 4-44 (97)
13 1svf_B Protein (fusion glycopr 48.0 17 0.00057 20.1 2.7 29 40-68 10-38 (38)
14 1g6u_A Domain swapped dimer; d 47.3 33 0.0011 19.9 4.0 13 64-76 35-47 (48)
15 3mq9_A Bone marrow stromal ant 37.6 83 0.0028 23.9 6.1 47 35-83 397-450 (471)
16 3oa7_A Head morphogenesis prot 35.9 84 0.0029 23.4 5.6 40 36-75 31-70 (206)
17 3b1f_A Putative prephenate deh 31.9 1.3E+02 0.0044 21.0 6.4 54 24-77 233-287 (290)
18 2fyz_B Fusion protein, fusion 31.0 30 0.001 20.3 2.0 30 40-69 12-41 (48)
19 1t98_A KICB protein, chromosom 30.8 1.4E+02 0.0049 23.1 6.4 54 22-75 160-218 (287)
20 1t98_A KICB protein, chromosom 30.5 1.8E+02 0.006 22.6 6.8 33 27-59 191-223 (287)
21 3ghg_A Fibrinogen alpha chain; 29.7 52 0.0018 27.9 4.0 46 26-76 91-137 (562)
22 3qb2_A Immunity factor for SPN 29.6 1E+02 0.0035 22.6 5.1 66 12-91 49-114 (187)
23 4ehp_B Catenin alpha-1; adhere 28.6 1.1E+02 0.0038 20.5 4.9 39 39-77 61-109 (111)
24 3frt_A Charged multivesicular 27.4 1.8E+02 0.0062 21.2 6.9 29 23-51 6-37 (218)
25 4div_A ORF48; distal tail prot 26.9 86 0.003 24.6 4.6 47 24-70 137-183 (299)
26 2k48_A Nucleoprotein; viral pr 26.8 1.5E+02 0.0051 20.0 5.9 15 64-78 83-97 (107)
27 2xz3_A Maltose ABC transporter 26.5 1.7E+02 0.0059 22.1 6.2 28 30-57 374-401 (463)
28 1b33_N Phycobilisome 7.8 KD li 26.4 31 0.0011 21.5 1.6 24 16-39 21-46 (67)
29 2v66_B Nuclear distribution pr 24.8 1.6E+02 0.0054 19.7 5.7 32 21-52 14-45 (111)
30 3err_A Fusion protein of micro 21.5 1.4E+02 0.005 24.3 5.2 20 57-76 54-73 (536)
31 4gif_A Polycystic kidney disea 21.1 1.3E+02 0.0044 17.3 4.7 33 45-77 10-42 (45)
32 4g2k_A General control protein 20.4 2.2E+02 0.0075 19.6 7.2 47 27-78 25-75 (125)
33 1wlq_A Geminin; coiled-coil; 2 20.2 1.8E+02 0.0062 18.7 4.9 17 58-74 67-83 (83)
34 3edu_A Beta-I spectrin, spectr 20.1 2.1E+02 0.007 19.2 7.1 31 26-56 36-70 (218)
No 1
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=79.79 E-value=7.7 Score=23.50 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=32.0
Q ss_pred cccccHHHHhH---HHHHhhhHHHHhHHHHHHHHHHHHHHhh
Q psy9802 21 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIA 59 (92)
Q Consensus 21 lLRVPyE~LrK---~FRs~QK~IErE~~~V~~~l~el~k~ls 59 (92)
-++|.||.|+. .|+.+...|+..+..+.+.++.+...-.
T Consensus 5 ~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~ 46 (98)
T 3gwk_C 5 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWD 46 (98)
T ss_dssp HBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 46899999884 6888888999999999999998877533
No 2
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=78.79 E-value=2.6 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=26.7
Q ss_pred hccccc-ccHHHHhHHHHHhhhHHHHhHHHHHH
Q psy9802 18 EHSTLK-VPYEILNKKFRAVQKTIDREVSYVQS 49 (92)
Q Consensus 18 E~plLR-VPyE~LrK~FRs~QK~IErE~~~V~~ 49 (92)
|..+|+ ++||.|....++.+-.+|+|+..+..
T Consensus 3 df~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~ 35 (51)
T 2jo8_A 3 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQ 35 (51)
T ss_dssp CCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhCCHHHHHHHHHHccHHHHHHHHHHHH
Confidence 345666 89999999999999999999876654
No 3
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=77.29 E-value=8.6 Score=22.89 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=30.7
Q ss_pred cccccHHHHhH---HHHHhhhHHHHhHHHHHHHHHHHHHHhhhh
Q psy9802 21 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIASS 61 (92)
Q Consensus 21 lLRVPyE~LrK---~FRs~QK~IErE~~~V~~~l~el~k~ls~~ 61 (92)
-++|.+|.|+. .|+.+...|+..+..+...+..+...-.|.
T Consensus 6 ~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~ 49 (93)
T 4ioe_A 6 EIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGA 49 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 47899998885 677778888888888888888876543343
No 4
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=69.78 E-value=15 Score=21.84 Aligned_cols=41 Identities=7% Similarity=0.209 Sum_probs=30.4
Q ss_pred cccccHHHHhH---HHHHhhhHHHHhHHHHHHHHHHHHHHhhhh
Q psy9802 21 TLKVPYEILNK---KFRAVQKTIDREVSYVQSAANELEKTIASS 61 (92)
Q Consensus 21 lLRVPyE~LrK---~FRs~QK~IErE~~~V~~~l~el~k~ls~~ 61 (92)
-++|.+|.|+. .|+.+...|+..+..+...+..+...-.|.
T Consensus 6 ~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~ 49 (99)
T 3zbh_A 6 VIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGA 49 (99)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred eeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 46888888874 678888889999999999988887654444
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=67.58 E-value=15 Score=26.23 Aligned_cols=52 Identities=6% Similarity=0.036 Sum_probs=36.9
Q ss_pred cHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh
Q psy9802 25 PYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 25 PyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLK 76 (92)
-+..++..||.....+..++......+.++..+-+-+.+.++++...+..|+
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 3456788888888888777777777777766544455557777777777665
No 6
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.45 E-value=24 Score=22.17 Aligned_cols=52 Identities=8% Similarity=0.153 Sum_probs=40.9
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNL 69 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~ 69 (92)
---|+..|.+........-...+|.++..+......+.+.+..-...|..++
T Consensus 60 G~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 60 GTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999888888888876665544555544
No 7
>2hn8_A Protein PB1-F2; Pro-apoptotic mitochondrial targeting protein, viral protein; NMR {Synthetic}
Probab=63.04 E-value=3.2 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=10.2
Q ss_pred HHHHhhhHhhhhh
Q psy9802 70 EVLFILQRWKLWR 82 (92)
Q Consensus 70 srl~gLKR~~~~~ 82 (92)
-+-+.|||||+..
T Consensus 23 Lkt~vlkrWklf~ 35 (38)
T 2hn8_A 23 LKTRVLKRWRLFS 35 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3667899999864
No 8
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=60.75 E-value=22 Score=21.09 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHh
Q psy9802 40 IDREVSYVQSAANELEKT---IASSAQVLAKNLEVLFI 74 (92)
Q Consensus 40 IErE~~~V~~~l~el~k~---ls~~~a~Ldsl~srl~g 74 (92)
+|-|+..+.+++.++-++ +.++...|..+++.+|.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~ 39 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKN 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888887776665 44555567777777663
No 9
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=57.73 E-value=17 Score=22.64 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCc
Q psy9802 46 YVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLG 87 (92)
Q Consensus 46 ~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~ 87 (92)
.+..-+-.++..+.+-...+|.+.++|.-+-|=++-|.|..|
T Consensus 10 ~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~ 51 (64)
T 3hrn_A 10 VLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLG 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444544555444677777777777776666665544
No 10
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=52.00 E-value=18 Score=26.84 Aligned_cols=61 Identities=20% Similarity=0.187 Sum_probs=51.7
Q ss_pred hcccccccHHHHhHHHH-HhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHh
Q psy9802 18 EHSTLKVPYEILNKKFR-AVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRW 78 (92)
Q Consensus 18 E~plLRVPyE~LrK~FR-s~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~ 78 (92)
+..-|++-++.|...+- ......+.|+..-.-++=.+++++++..+.++.+-+|++.++|=
T Consensus 58 ~~~~L~~Gl~~L~~~L~~~~~~~~~~el~RY~~~ll~LErkL~k~~~~l~~L~~rI~q~~rQ 119 (213)
T 1sdi_A 58 SEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQ 119 (213)
T ss_dssp CGGGGHHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHTTHHH
T ss_pred ChHhHHHHHHHHHHHHcccCCCccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 55578999999998885 44567788998888888899999998888999999999999874
No 11
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.63 E-value=30 Score=21.34 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=34.0
Q ss_pred hcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhh
Q psy9802 18 EHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASS 61 (92)
Q Consensus 18 E~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~ 61 (92)
---|+..|.+........-...++.++..+......+.+.+..-
T Consensus 55 G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 55 GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578889999988888888888888888888877777655443
No 12
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=48.99 E-value=39 Score=19.84 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.2
Q ss_pred ccccHHHHh---HHHHHhhhHHHHhHHHHHHHHHHHHHHhh
Q psy9802 22 LKVPYEILN---KKFRAVQKTIDREVSYVQSAANELEKTIA 59 (92)
Q Consensus 22 LRVPyE~Lr---K~FRs~QK~IErE~~~V~~~l~el~k~ls 59 (92)
++|.||.|+ ..|+.....|+..+..+...+..+...-.
T Consensus 4 i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~ 44 (97)
T 2vs0_A 4 IKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWE 44 (97)
T ss_dssp BCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 677887776 46778888888888888888888876533
No 13
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=47.97 E-value=17 Score=20.09 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9802 40 IDREVSYVQSAANELEKTIASSAQVLAKN 68 (92)
Q Consensus 40 IErE~~~V~~~l~el~k~ls~~~a~Ldsl 68 (92)
|--|+..|++.+++...-+..+++.|++|
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~Sn~~L~~~ 38 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQSDTYLSAI 38 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44578888888888887777777777653
No 14
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=47.33 E-value=33 Score=19.93 Aligned_cols=13 Identities=31% Similarity=0.100 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhh
Q psy9802 64 VLAKNLEVLFILQ 76 (92)
Q Consensus 64 ~Ldsl~srl~gLK 76 (92)
.|..+-|++|.||
T Consensus 35 klaalksklqalk 47 (48)
T 1g6u_A 35 KLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhc
Confidence 5666777777776
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=37.55 E-value=83 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=25.3
Q ss_pred HhhhHHHHhHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHhhhHhhhhhc
Q psy9802 35 AVQKTIDREVSYVQSAANELEKTIASSAQ-------VLAKNLEVLFILQRWKLWRN 83 (92)
Q Consensus 35 s~QK~IErE~~~V~~~l~el~k~ls~~~a-------~Ldsl~srl~gLKR~~~~~~ 83 (92)
+.+..|.|.++.+++.+.++.+..+.++- .|++-+ -|++||++--.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 450 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK--AQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34444555555555555555554444432 244433 458898876544
No 16
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=35.87 E-value=84 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.049 Sum_probs=27.9
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9802 36 VQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 36 ~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gL 75 (92)
+-.++|.|..++.+..+|++++.+...+-+|.+-+++..|
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 4456888888999999999988766655555555554433
No 17
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=31.95 E-value=1.3e+02 Score=20.97 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=41.1
Q ss_pred ccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhhhH
Q psy9802 24 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIA-SSAQVLAKNLEVLFILQR 77 (92)
Q Consensus 24 VPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls-~~~a~Ldsl~srl~gLKR 77 (92)
-+-++++..+.+....+.+.+..+...+.++...+. ++.+.|.+.+++.+.+++
T Consensus 233 ~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~~~r~ 287 (290)
T 3b1f_A 233 SEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQSRQIRK 287 (290)
T ss_dssp SCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888887766 344478888877766543
No 18
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=31.01 E-value=30 Score=20.25 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=22.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9802 40 IDREVSYVQSAANELEKTIASSAQVLAKNL 69 (92)
Q Consensus 40 IErE~~~V~~~l~el~k~ls~~~a~Ldsl~ 69 (92)
|.-|+..|++++++...-+..+++.|+++.
T Consensus 12 ISseL~~iNnsL~~A~~~I~eSn~~L~~V~ 41 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKESNHQLQSVI 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566888888888888877777777776643
No 19
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=30.78 E-value=1.4e+02 Score=23.12 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=33.1
Q ss_pred ccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHhh
Q psy9802 22 LKVPYEILNKKFRAVQKTIDREVSYVQSAANELEK-----TIASSAQVLAKNLEVLFIL 75 (92)
Q Consensus 22 LRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k-----~ls~~~a~Ldsl~srl~gL 75 (92)
||.....+=-..--.||.+|..-..|+..++++-+ +.++|..-|+.....||.|
T Consensus 160 LkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~CE~LL~eTs~tLREL 218 (287)
T 1t98_A 160 LKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL 218 (287)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHH
Confidence 35555555555566777777777777777777654 3556655555555555544
No 20
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=30.47 E-value=1.8e+02 Score=22.63 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=23.6
Q ss_pred HHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhh
Q psy9802 27 EILNKKFRAVQKTIDREVSYVQSAANELEKTIA 59 (92)
Q Consensus 27 E~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls 59 (92)
++|++..|.|--+-|.=++....++.|+...+.
T Consensus 191 ~LL~qDW~~AI~~CE~LL~eTs~tLRELqDtL~ 223 (287)
T 1t98_A 191 QLLNKDWRAAISSCELLLSETSGTLRELQDTLE 223 (287)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 568888888777777777777777777766544
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.74 E-value=52 Score=27.88 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhhHHHHhHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhhh
Q psy9802 26 YEILNKKFRAVQKTIDREVSYVQSAAN-ELEKTIASSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 26 yE~LrK~FRs~QK~IErE~~~V~~~l~-el~k~ls~~~a~Ldsl~srl~gLK 76 (92)
||.|++++..++ +..++.+.++ ||.+...--...|+..+++++.|+
T Consensus 91 ~E~Lr~rq~q~~-----dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 91 MEILRGDFSSAN-----NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHTTSSHHHHHH-----HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 22
>3qb2_A Immunity factor for SPN; glycohydrolase inhibitor, streptococcus pyogenes glycohydrol toxin, hydrolase inhibitor; 2.50A {Streptococcus pyogenes} PDB: 3pnt_B
Probab=29.60 E-value=1e+02 Score=22.60 Aligned_cols=66 Identities=15% Similarity=0.074 Sum_probs=44.2
Q ss_pred chhhhhhcccccccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHhhhhhccCCccccC
Q psy9802 12 IFILCLEHSTLKVPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLEVLFILQRWKLWRNENLGFYIP 91 (92)
Q Consensus 12 ~~~l~LE~plLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR~~~~~~~~~~~~~~ 91 (92)
+-..++|+|+..+ |=-+-+.|.+..-.+...+ ++|++.-.|.++++-+..=+ |-|-.-+++-|||-
T Consensus 49 Di~VLlEYcLYPL--------YveGd~dI~~rTfeiLkef-----S~S~d~v~LyQVt~yI~~Qn-~lL~~Y~~LPF~Ie 114 (187)
T 3qb2_A 49 DPEVILEYGVYPA--------FIKGYTQLKANIEEALLEM-----SNSGQALDIYQAVQTLNAEN-MLLNYYESLPFYLN 114 (187)
T ss_dssp CHHHHHHHTHHHH--------HHHTCTTHHHHHHHHHHHH-----HTSCCHHHHHHHHHHHHHHH-HHHHHHSCCSCCCC
T ss_pred cHHHHHHHhhhhh--------hccCccHhHHHHHHHHHHH-----hcccchHHHHHHHHHHHHHH-HHHHhccCCCeEEe
Confidence 3457789988655 3345556665554443333 45566557999999988777 55667799999985
No 23
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=28.62 E-value=1.1e+02 Score=20.54 Aligned_cols=39 Identities=23% Similarity=0.197 Sum_probs=28.2
Q ss_pred HHHHhHHHHHHHHHHHHHH-hhh------hHH---HHHHHHHHHHhhhH
Q psy9802 39 TIDREVSYVQSAANELEKT-IAS------SAQ---VLAKNLEVLFILQR 77 (92)
Q Consensus 39 ~IErE~~~V~~~l~el~k~-ls~------~~a---~Ldsl~srl~gLKR 77 (92)
.|=-|-++|..++.+|.+. +.+ ..+ ++++|..+.++|||
T Consensus 61 rIv~eCnavRqaLQdLlseym~~~g~ke~se~L~~aI~km~~kt~dLrR 109 (111)
T 4ehp_B 61 RIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRR 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHh
Confidence 4556778888888888775 221 111 79999999999998
No 24
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=27.39 E-value=1.8e+02 Score=21.16 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=19.3
Q ss_pred cccHHHHhH---HHHHhhhHHHHhHHHHHHHH
Q psy9802 23 KVPYEILNK---KFRAVQKTIDREVSYVQSAA 51 (92)
Q Consensus 23 RVPyE~LrK---~FRs~QK~IErE~~~V~~~l 51 (92)
+-|=|.+|+ ..|..+|.|||++..+...=
T Consensus 6 ~~p~e~~r~~~r~Lr~~~R~LdR~~~kle~eE 37 (218)
T 3frt_A 6 KPPKELVNEWSLKIRKEMRVVDRQIRDIQREE 37 (218)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677765 56677888888888776543
No 25
>4div_A ORF48; distal tail protein, receptor-binding protein, phage basepla adsorption apparatus, genome injection device, viral protei; 3.80A {Lactococcus phage tp901-1}
Probab=26.88 E-value=86 Score=24.56 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred ccHHHHhHHHHHhhhHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9802 24 VPYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVLAKNLE 70 (92)
Q Consensus 24 VPyE~LrK~FRs~QK~IErE~~~V~~~l~el~k~ls~~~a~Ldsl~s 70 (92)
-+||.|.+.|...-.....+..+-.++.+|+.++++.+-..|.++++
T Consensus 137 ~~FEdL~~~~~~yI~e~k~~~e~w~es~keil~sIDpgg~~L~e~id 183 (299)
T 4div_A 137 WTFKELYRIFNKYIEDGKKSWEQFVEANREILESIDPGGVLLAKVID 183 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSSSSTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChhhHHHHHHHh
Confidence 36899999999998888888889999999999998866555666654
No 26
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.83 E-value=1.5e+02 Score=19.99 Aligned_cols=15 Identities=20% Similarity=-0.017 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhhHh
Q psy9802 64 VLAKNLEVLFILQRW 78 (92)
Q Consensus 64 ~Ldsl~srl~gLKR~ 78 (92)
+++.+=+|+..|||-
T Consensus 83 ~Vsalq~KiaeLKrq 97 (107)
T 2k48_A 83 AVSTLETKLGELKRQ 97 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777788888874
No 27
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=26.54 E-value=1.7e+02 Score=22.10 Aligned_cols=28 Identities=7% Similarity=0.256 Sum_probs=12.5
Q ss_pred hHHHHHhhhHHHHhHHHHHHHHHHHHHH
Q psy9802 30 NKKFRAVQKTIDREVSYVQSAANELEKT 57 (92)
Q Consensus 30 rK~FRs~QK~IErE~~~V~~~l~el~k~ 57 (92)
.+.+++....++.++..+..++..+.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 401 (463)
T 2xz3_A 374 HQRLTSLIHVLEQDQQRLITAINQTHYN 401 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 28
>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} SCOP: d.30.1.1
Probab=26.41 E-value=31 Score=21.52 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred hhhcccc--cccHHHHhHHHHHhhhH
Q psy9802 16 CLEHSTL--KVPYEILNKKFRAVQKT 39 (92)
Q Consensus 16 ~LE~plL--RVPyE~LrK~FRs~QK~ 39 (92)
.|.-.++ .|||+.++..++..||.
T Consensus 21 ~~~~~~~t~~VPy~rms~emQrI~r~ 46 (67)
T 1b33_N 21 ELQNTYFTKLVPYENWFREQQRIQKM 46 (67)
T ss_dssp CHHHHEEEEEEEHHHHHHHHHHHHHT
T ss_pred ccceEEEEEEecHHHHhHHHHHHHHc
Confidence 3445566 69999999998887763
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.82 E-value=1.6e+02 Score=19.65 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=19.2
Q ss_pred cccccHHHHhHHHHHhhhHHHHhHHHHHHHHH
Q psy9802 21 TLKVPYEILNKKFRAVQKTIDREVSYVQSAAN 52 (92)
Q Consensus 21 lLRVPyE~LrK~FRs~QK~IErE~~~V~~~l~ 52 (92)
-|+.-+|.++.+|..+++.--..++.++.-+.
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~ 45 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLS 45 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888887764444444443333
No 30
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=21.55 E-value=1.4e+02 Score=24.29 Aligned_cols=20 Identities=0% Similarity=0.066 Sum_probs=8.2
Q ss_pred HhhhhHHHHHHHHHHHHhhh
Q psy9802 57 TIASSAQVLAKNLEVLFILQ 76 (92)
Q Consensus 57 ~ls~~~a~Ldsl~srl~gLK 76 (92)
.++.+.++|+...+-|.+|+
T Consensus 54 dLa~A~PaL~~A~~AL~~L~ 73 (536)
T 3err_A 54 DLDKVEPAVIEAQNAVKSIK 73 (536)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34443334444444444433
No 31
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=21.10 E-value=1.3e+02 Score=17.29 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhH
Q psy9802 45 SYVQSAANELEKTIASSAQVLAKNLEVLFILQR 77 (92)
Q Consensus 45 ~~V~~~l~el~k~ls~~~a~Ldsl~srl~gLKR 77 (92)
..+..-+-.++..+.+-...+|.+.+||.-+-|
T Consensus 10 ~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er 42 (45)
T 4gif_A 10 YMLTRRVLQLETVLEGVVSQIDAVGSKLKMLER 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555577888888776655
No 32
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=20.39 E-value=2.2e+02 Score=19.63 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHhHHHHHhhhHHHHhHHHHHHHHHHHHHH---hhhhHH-HHHHHHHHHHhhhHh
Q psy9802 27 EILNKKFRAVQKTIDREVSYVQSAANELEKT---IASSAQ-VLAKNLEVLFILQRW 78 (92)
Q Consensus 27 E~LrK~FRs~QK~IErE~~~V~~~l~el~k~---ls~~~a-~Ldsl~srl~gLKR~ 78 (92)
|.|.|.| ++|.|++.+.+.+-.+... +++.++ +|+.+.+....+...
T Consensus 25 ~~~~~~~-----~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~ 75 (125)
T 4g2k_A 25 EILSKIY-----HIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTF 75 (125)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566654 6888988888877766653 444444 566666665555443
No 33
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=20.20 E-value=1.8e+02 Score=18.66 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHh
Q psy9802 58 IASSAQVLAKNLEVLFI 74 (92)
Q Consensus 58 ls~~~a~Ldsl~srl~g 74 (92)
++.....|.++++||.|
T Consensus 67 lA~~~q~la~~i~~L~~ 83 (83)
T 1wlq_A 67 VAEHVQYMAEVIERLSN 83 (83)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 44444457777777654
No 34
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=20.13 E-value=2.1e+02 Score=19.21 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHhHHHHHhhhHHHH-h---HHHHHHHHHHHHH
Q psy9802 26 YEILNKKFRAVQKTIDR-E---VSYVQSAANELEK 56 (92)
Q Consensus 26 yE~LrK~FRs~QK~IEr-E---~~~V~~~l~el~k 56 (92)
.+.+.+.|+..++.+.. - +..|.....++..
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~ 70 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLID 70 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 46788888888887764 2 3344444444443
Done!