RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9802
         (92 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.4 bits (70), Expect = 0.025
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 18/80 (22%)

Query: 12  IFILCLEHSTLKVPYEILN----------KKFRAVQKTIDREVSYVQSAANELEKTIASS 61
           + +  L+     +P E+L           +  R    T D    +     ++L   I SS
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNCDKLTTIIESS 362

Query: 62  AQVLA-----KNLEVLFILQ 76
             VL      K  + L +  
Sbjct: 363 LNVLEPAEYRKMFDRLSVFP 382


>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 352

 Score = 28.7 bits (64), Expect = 0.19
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 29  LNKKFRAVQKTIDREVSYVQSAANELEKTIASS 61
            +K+F  +QK  + +  Y    A  L K ++S+
Sbjct: 118 RSKRFLEIQKLREIKQEYDLKTALSLMKQMSST 150


>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
          {Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
          2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c*
          1yl3_C 1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C
          2om7_K* 2v47_C ...
          Length = 229

 Score = 28.0 bits (63), Expect = 0.31
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 29 LNKKFRAVQKTIDREVSYVQSAANELEKTIASS 61
            K++RA+ + +D    Y    A  L K +A++
Sbjct: 4  HGKRYRALLEKVDPNKIYTIDEAAHLVKELATA 36


>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein,
          nucleotide-binding, protein biosynthesis, translation,
          zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB:
          3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C*
          3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
          Length = 234

 Score = 27.6 bits (62), Expect = 0.41
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 29 LNKKFRAVQKTIDREVSYVQSAANELEKTIASS 61
          L K+ R +++ +D    Y  + A  L K +A++
Sbjct: 4  LTKRMRVIREKVDATKQYDINEAIALLKELATA 36


>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
          of ribosome, rRNA BI regulation of translation,
          translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
          Length = 242

 Score = 27.7 bits (62), Expect = 0.46
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 29 LNKKFRAVQKTIDREVSYVQSAANELEKTIASSA 62
            KK+    K +DR   Y    A +L K +    
Sbjct: 4  RGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVL 37


>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active
           site, N-glycosylation, C cation, chloride anion, zinc
           IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo
           sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A*
           2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A*
           2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A*
           3d7f_A* ...
          Length = 707

 Score = 25.3 bits (54), Expect = 4.1
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 30  NKKFRAVQKTIDREVSYVQSAANELEKTI 58
              ++ V+K I      +Q+AA  L++ +
Sbjct: 679 RLAWKEVKKHISIAAFTIQAAAGTLKEVL 707


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.9 bits (53), Expect = 4.8
 Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 6/35 (17%)

Query: 37 QKTIDREVSYVQSAANELEKTIASSAQVLAKNLEV 71
          +K   + +  +Q++   L+     SA  LA    +
Sbjct: 18 EK---QALKKLQAS---LKLYADDSAPALAIKATM 46


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 12  IFILCLEH--STLKV----PYEILNKKFRAVQKTIDREVSYVQSAANELEKTIASSAQVL 65
           I ++ L H   T K+    P E L    +       + +  V + A     +  S    +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGE-LRSYLKGAT-GHSQGL--VTAVAIAETDSWESFFVSV 296

Query: 66  AKNLEVLFIL 75
            K + VLF +
Sbjct: 297 RKAITVLFFI 306


>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
           chromophore, glycoprotein, lipoprotein, membrane,
           palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
           2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
          Length = 448

 Score = 24.1 bits (52), Expect = 7.8
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 26  YEILNKKFR-AVQKTIDREVSYVQSAANELEKTIASSAQV 64
           Y + + KFR A+ +T    ++  Q    E E    +  ++
Sbjct: 315 YSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEI 354


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,289,475
Number of extensions: 57211
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 14
Length of query: 92
Length of database: 6,701,793
Length adjustment: 59
Effective length of query: 33
Effective length of database: 5,054,454
Effective search space: 166796982
Effective search space used: 166796982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)