RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9802
         (92 letters)



>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
          nucleotide-binding domains {Bacillus subtilis [TaxId:
          1423]}
          Length = 273

 Score = 23.8 bits (51), Expect = 4.1
 Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 28 ILNKKFRAVQKTIDREVSYVQSAANELEKTIAS 60
          ILNK F   ++T++R         + +     +
Sbjct: 4  ILNKMFDPTKRTLNRYEKIAN-DIDAIRGDYEN 35


>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 157

 Score = 23.4 bits (50), Expect = 4.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 31  KKFRAVQKTIDREVSYVQSAANELEK 56
           K +  V++ I      VQ+AA  L +
Sbjct: 130 KAWGEVKRQIYVAAFTVQAAAETLSE 155


>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
          [TaxId: 274]}
          Length = 224

 Score = 23.1 bits (49), Expect = 8.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 31 KKFRAVQKTIDREVSYVQSAANELEKTIAS 60
          K++RA+ + +D    Y    A  L K +A+
Sbjct: 1  KRYRALLEKVDPNKIYTIDEAAHLVKELAT 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,694
Number of extensions: 10603
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)