BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9807
(561 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 566 bits (1460), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/412 (66%), Positives = 329/412 (79%), Gaps = 5/412 (1%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ EFKDFAK MVD++ YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIE
Sbjct: 2 EAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
RVIMPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DW
Sbjct: 62 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W + I+
Sbjct: 122 LGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG 181
Query: 198 NLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGK-GGGVIQRKSDREMCSDLLQ--VV 254
L+ C++ ++ G + + + + G +++ ++++ L+ V
Sbjct: 182 KLVGY--CSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAV 239
Query: 255 ATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFN 314
TLGTTN CAFD L+E G V + ++W+HVDAAYAGSAFICPE R+LMKG+E ADSFNFN
Sbjct: 240 VTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFN 299
Query: 315 PHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKL 374
PH WMLV FDCSAMWLKDPSWVVNAFNVDPLYLKHD QGSAPDYRHWQIPLGRRFR+LKL
Sbjct: 300 PHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKL 359
Query: 375 WFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
WFVLRL GV+ LQ +IR+ + AK+F L +D RFE+ E+ MGLVCFRLK
Sbjct: 360 WFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLK 411
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 99/121 (81%)
Query: 426 KHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 485
+HWQIPLGRRFR+LKLWFVLRL GV+ LQ +IR+ + AK+F L +D RFE+ E+ M
Sbjct: 344 RHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINM 403
Query: 486 GLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWNE 545
GLVCFRLKG NE NE LLKRING G IHLVP+KI+DVYFLRMA+CSR+++S DM YSW E
Sbjct: 404 GLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKE 463
Query: 546 I 546
+
Sbjct: 464 V 464
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 241/416 (57%), Positives = 305/416 (73%), Gaps = 10/416 (2%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ +EF+ K MVDYV NY+E I R+V P VEPGYLRPLIP AP PDT++++++D+E
Sbjct: 2 NASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML+LPK FL G+GGGVIQG+ASEATLVALL A+ K + R++ A P+ + I+
Sbjct: 122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181
Query: 198 NLIA---SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ-- 252
L+A A + +E L K+ +P + + +Q +R+ + L+
Sbjct: 182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSD---GNFAMRASALQEALERDKAAGLIPFF 238
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFN 312
+VATLGTT CC+FD L E+G +C ++D+WLHVDAAYAGSAFICPE R+L+ GVE ADSFN
Sbjct: 239 MVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFN 298
Query: 313 FNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSA--PDYRHWQIPLGRRFR 370
FNPHKW+LV FDCSAMW+K + + AF +DP YLKH Q S DYRHWQIPLGRRFR
Sbjct: 299 FNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFR 358
Query: 371 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
SLK+WFV R+ GVK LQ YIRK + L+ EFE LVR D RFE+ EV++GLVCFRLK
Sbjct: 359 SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK 414
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/377 (37%), Positives = 190/377 (50%), Gaps = 47/377 (12%)
Query: 201 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLL----QVVAT 256
ASPACTELE VM+DWLGKML+LPK FL G+GGGVIQ + LL +V+
Sbjct: 107 ASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHR 166
Query: 257 LGTTNCCAFDCLEEIGQVC-RQKDVWLHVDAAYAGS-----------AFICPENRYLMKG 304
L + E+ Q +K V D A++ I + + M+
Sbjct: 167 LQAAS-------PELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRA 219
Query: 305 VELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHD--------QQGSA- 355
L ++ + ++ F + + N V P+ K D GSA
Sbjct: 220 SALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAF 279
Query: 356 --PDYRHW----QIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDR 409
P++RH + F K W L+ +++K+ L F R D
Sbjct: 280 ICPEFRHLLNGVEFADSFNFNPHK-WL---LVNFDCSAMWVKKRTDLTGAF----RLDPT 331
Query: 410 FEVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQ 469
+ GL+ +HWQIPLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE
Sbjct: 332 YLKHSHQDSGLIT-DYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFES 390
Query: 470 LVRSDDRFEVIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAV 529
LVR D RFE+ EV++GLVCFRLKG N++NE LL+RIN KIHLVP +RD + LR A+
Sbjct: 391 LVRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAI 450
Query: 530 CSRYSESSDMIYSWNEI 546
CSR ES+ + +W I
Sbjct: 451 CSRTVESAHVQRAWEHI 467
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/416 (57%), Positives = 304/416 (73%), Gaps = 10/416 (2%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ +EF+ K MVDYV NY+E I R+V P VEPGYLRPLIP AP PDT++++++D+E
Sbjct: 2 NASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML+LPK FL G+GGGVIQG+ASEATLVALL A+ K + R++ A P+ + I+
Sbjct: 122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181
Query: 198 NLIA---SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ-- 252
L+A A + +E L K+ +P + + +Q +R+ + L+
Sbjct: 182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSD---GNFAMRASALQEALERDKAAGLIPFF 238
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFN 312
+VATLGTT CC+FD L E+G +C ++D+WLHVDAAYAGSAFICPE R+L+ GVE ADSFN
Sbjct: 239 MVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFN 298
Query: 313 FNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSA--PDYRHWQIPLGRRFR 370
FNPH W+LV FDCSAMW+K + + AF +DP YLKH Q S DYRHWQIPLGRRFR
Sbjct: 299 FNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFR 358
Query: 371 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
SLK+WFV R+ GVK LQ YIRK + L+ EFE LVR D RFE+ EV++GLVCFRLK
Sbjct: 359 SLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK 414
Score = 207 bits (528), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 190/376 (50%), Gaps = 45/376 (11%)
Query: 201 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLL----QVVAT 256
ASPACTELE VM+DWLGKML+LPK FL G+GGGVIQ + LL +V+
Sbjct: 107 ASPACTELETVMMDWLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHR 166
Query: 257 LGTTNCCAFDCLEEIGQVC-RQKDVWLHVDAAYAGS-----------AFICPENRYLMKG 304
L + E+ Q +K V D A++ I + + M+
Sbjct: 167 LQAAS-------PELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRA 219
Query: 305 VELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHD--------QQGSA- 355
L ++ + ++ F + + N V P+ K D GSA
Sbjct: 220 SALQEALERDKAAGLIPFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAF 279
Query: 356 --PDYRHW--QIPLGRRFR-SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRF 410
P++RH + F + W L+ +++K+ L F R D +
Sbjct: 280 ICPEFRHLLNGVEFADSFNFNPHXWL---LVNFDCSAMWVKKRTDLTGAF----RLDPTY 332
Query: 411 EVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQL 470
GL+ +HWQIPLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE L
Sbjct: 333 LKHSHQDSGLIT-DYRHWQIPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESL 391
Query: 471 VRSDDRFEVIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVC 530
VR D RFE+ EV++GLVCFRLKG N++NE LL+RIN KIHLVP +RD + LR A+C
Sbjct: 392 VRQDPRFEICVEVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAIC 451
Query: 531 SRYSESSDMIYSWNEI 546
SR ES+ + +W I
Sbjct: 452 SRTVESAHVQRAWEHI 467
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/419 (57%), Positives = 305/419 (72%), Gaps = 16/419 (3%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ ++F+ K MVDY+ +YLE I R+V P V+PGYLRPLIP TAP PDT+++++ D+E
Sbjct: 2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML LP+ FLA G+GGGVIQG+ASEATLVALL A+ K ++R++ A P ++
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 198 NLIA---SPACTELEVVMLDWLGKMLDLPKEFLACSGGK---GGGVIQRKSDREMCSDLL 251
L+A A + +E L K+ +P S GK +Q +R+ + L+
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIP------SDGKFAMRASALQEALERDKAAGLI 235
Query: 252 Q--VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELAD 309
VVATLGTT+CC+FD L E+G +C ++D+WLHVDAAYAGSAFICPE R+L+ GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSA--PDYRHWQIPLGR 367
SFNFNPHKW+LV FDCSAMW+K + + AF +DP+YLKH QGS DYRHWQ+PLGR
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 368 RFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
RFRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D RFEV EV +GLVCFRLK
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLK 414
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 181/372 (48%), Gaps = 37/372 (9%)
Query: 201 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQV------- 253
ASPACTELE VM+DWLGKML LP+ FLA G+GGGVIQ + LL
Sbjct: 107 ASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166
Query: 254 --VATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAF--ICPENRYLMKGVELAD 309
A+ G T + L + Q + G I + ++ M+ L +
Sbjct: 167 LQAASPGLTQGAVLEKL--VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQE 224
Query: 310 SFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHD--------QQGSA---PDY 358
+ + ++ F + + N V P+ + D GSA P++
Sbjct: 225 ALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEF 284
Query: 359 RHW----QIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY 414
RH + F K W L+ +++++ L F + D +
Sbjct: 285 RHLLNGVEFADSFNFNPHK-WL---LVNFDCSAMWVKRRTDLTGAF----KLDPVYLKHS 336
Query: 415 EVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSD 474
GL+ +HWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D
Sbjct: 337 HQGSGLIT-DYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD 395
Query: 475 DRFEVIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYS 534
RFEV EV +GLVCFRLKG + +NE LL+RIN KIHLVP ++R + LR A+CSR
Sbjct: 396 PRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKV 455
Query: 535 ESSDMIYSWNEI 546
ES + +W I
Sbjct: 456 ESGHVRLAWEHI 467
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/411 (49%), Positives = 276/411 (67%), Gaps = 7/411 (1%)
Query: 21 EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 80
E+++ + MVDY+ YL +R+RRV P V+PGYLR +PE+AP+ PD+W + DIER+I
Sbjct: 10 EYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERII 69
Query: 81 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 140
MPGV HW SP HAY+P S+P+++ D+L+D+I C+GFTW +SPACTELE+ ++DWL K
Sbjct: 70 MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAK 129
Query: 141 MLDLPKEFLACS-GGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 199
ML LP+ FL +GGGV+Q T SE+TL+ALL A+ + +K + PD +S + A L
Sbjct: 130 MLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189
Query: 200 IA---SPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQRKSDREMCSDLLQVVA 255
+A A + +E L L KM LP + + G I+ R + + V A
Sbjct: 190 VAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVP--VFVCA 247
Query: 256 TLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNP 315
TLGTT CAFD L E+G +C ++ +WLH+DAAYAG+AF+CPE R +KG+E ADSF FNP
Sbjct: 248 TLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNP 307
Query: 316 HKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLW 375
KWM+V FDC+ W+KD + F+V+P+YL+H G A D+ HWQIPL RRFRS+KLW
Sbjct: 308 SKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLW 367
Query: 376 FVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
FV+R GVK LQ ++R +AK FE LVR+D FE+ + +GLV FRLK
Sbjct: 368 FVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLK 418
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 81/120 (67%)
Query: 427 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 486
HWQIPL RRFRS+KLWFV+R GVK LQ ++R +AK FE LVR+D FE+ + +G
Sbjct: 352 HWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLG 411
Query: 487 LVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWNEI 546
LV FRLKGPN + E +LK I G++ L+P+ I+D +R V S+++ D++ WN I
Sbjct: 412 LVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLI 471
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/395 (24%), Positives = 164/395 (41%), Gaps = 54/395 (13%)
Query: 64 DTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIA 123
D P +E++ + + + H P++ T + AD L+ + FT+
Sbjct: 64 DQPQNLEEILMHCQTTLKYAIKTGH-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEI 122
Query: 124 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 183
+P LE V L KM +E + GG G G+ + + + A++ A+ K V
Sbjct: 123 APVFVLLEYVTLK---KM----REIIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEV 175
Query: 184 KEAHPDWKDSDIIANLIASPA-----------------CTELEVVMLDWLGKML--DLPK 224
KE K + LIA + + ++ D GKM+ DL +
Sbjct: 176 KE-----KGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLER 230
Query: 225 EFLACSGGKGGGVIQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHV 284
L K G + V AT GTT AFD L + +C++ +W+HV
Sbjct: 231 RILEA---KQKGFVP-----------FLVSATAGTTVYGAFDPLLAVADICKKYKIWMHV 276
Query: 285 DAAYAGSAFICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDP 344
DAA+ G + ++++ + GVE A+S +NPH M V CSA+ +++ + N +
Sbjct: 277 DAAWGGGLLMSRKHKWKLSGVERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHA 336
Query: 345 LYLKHDQQGSAPDYRHWQIPL--GRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQ 402
YL + Y L GR KLW + R G + ++ K + LA+
Sbjct: 337 SYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYN 396
Query: 403 LVRSDDRFEVIYE--VLMGLVCFRLKHWQIPLGRR 435
++++ + +E++++ VCF W IP R
Sbjct: 397 IIKNREGYEMVFDGKPQHTNVCF----WYIPPSLR 427
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 433 GRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE--VLMGLVCF 490
GR KLW + R G + ++ K + LA+ ++++ + +E++++ VCF
Sbjct: 360 GRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQHTNVCF 419
Query: 491 RLKGPN----EINEKLLKRIN 507
P+ E NE+ + R++
Sbjct: 420 WYIPPSLRTLEDNEERMSRLS 440
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFN 312
V AT GTT AFD LE I VC++ +WLHVDAA+ GS + +R+L+ G++ ADS
Sbjct: 263 VSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVA 322
Query: 313 FNPHKWMLVTFDCSAMWLKDPSWVV---NAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRF 369
+NPHK + CSA+ L+D S ++ + L+ + A D + GRR
Sbjct: 323 WNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRV 382
Query: 370 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQ 429
LKLW + + G + L+ I + LA+ + ++ + FE++ E VCF W
Sbjct: 383 DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF----WF 438
Query: 430 IP 431
+P
Sbjct: 439 VP 440
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 430 IPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVC 489
+ GRR LKLW + + G + L+ I + LA+ + ++ + FE++ E VC
Sbjct: 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVC 435
Query: 490 F-----RLKGPNE--------------INEKLLKRINGNGKIHLVPSKIRDVYFLRMAVC 530
F L+G E + E+++K G+ I P R +F R+ V
Sbjct: 436 FWFVPPSLRGKQESPDYHERLSKVAPVLKERMVK--EGSMMIGYQPHGTRGNFF-RVVVA 492
Query: 531 SRYSESSDMIYSWNEI 546
+ +DM + NE+
Sbjct: 493 NSALTCADMDFLLNEL 508
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 180/436 (41%), Gaps = 53/436 (12%)
Query: 25 FAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEVMSDIERV 79
F +VD + NY+ DR +VL P L + D P++ ++++ D
Sbjct: 27 FLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDT 86
Query: 80 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 139
+ GV H P+F T + + L+ + FT+ +P +E + L +
Sbjct: 87 LKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKM- 144
Query: 140 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 199
+E + S G G+ + + + +++ A+ K VK +
Sbjct: 145 ------REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK-----------TKGM 187
Query: 200 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDR------EMCSDLLQ- 252
A P ++V+ + K A G ++ + ++R + + +L+
Sbjct: 188 AAVP-----KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEA 242
Query: 253 ---------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMK 303
V AT GTT AFD ++EI +C + ++WLHVDAA+ G + ++R+ +
Sbjct: 243 KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLN 302
Query: 304 GVELADSFNFNPHKWMLVTFDCSAMWLKDPSWV--VNAFNVDPLYLKHDQQGSAPDYRHW 361
G+E A+S +NPH M V CSA+ +K+ + N + L+ + + D
Sbjct: 303 GIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK 362
Query: 362 QIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY--EVLMG 419
I GR K W + + G + I K + LA+ +++ + FE+++ E
Sbjct: 363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 422
Query: 420 LVCFRLKHWQIPLGRR 435
VCF W IP R
Sbjct: 423 NVCF----WYIPQSLR 434
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 179/436 (41%), Gaps = 53/436 (12%)
Query: 25 FAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEVMSDIERV 79
F +VD + NY+ DR +VL P L + D P++ ++++ D
Sbjct: 24 FLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDT 83
Query: 80 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 139
+ GV H P+F T + + L+ + FT+ +P +E + L +
Sbjct: 84 LKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKM- 141
Query: 140 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 199
+E + S G G+ + + + +++ A+ K VK +
Sbjct: 142 ------REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVK-----------TKGM 184
Query: 200 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDR------EMCSDLLQ- 252
A P ++V+ + K A G ++ + ++R + + +L+
Sbjct: 185 AAVP-----KLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEA 239
Query: 253 ---------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMK 303
V AT GTT AFD ++EI +C + ++WLHVDAA+ G + ++R+ +
Sbjct: 240 KQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLN 299
Query: 304 GVELADSFNFNPHKWMLVTFDCSAMWLKDPSWV--VNAFNVDPLYLKHDQQGSAPDYRHW 361
G+E A+S +NPH M V CSA+ +K+ + N L+ Q + D
Sbjct: 300 GIERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDK 359
Query: 362 QIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY--EVLMG 419
I GR K W + + G + I K + LA+ +++ + FE+++ E
Sbjct: 360 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 419
Query: 420 LVCFRLKHWQIPLGRR 435
VCF W IP R
Sbjct: 420 NVCF----WYIPQSLR 431
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 100/206 (48%), Gaps = 7/206 (3%)
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFN 312
+V T GTT+ A D L+ I + D W HVD AY G A I ++ +KGVE A S +
Sbjct: 262 IVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSRLKGVERAHSIS 320
Query: 313 FNPHKWMLVTFDCSAMWLKDPS-WVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRS 371
+ HK T C A+ + D S + + D L +HD+ P+ I +RF +
Sbjct: 321 VDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDE---LPNLVDKSIATTKRFDA 377
Query: 372 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQIP 431
LK++ + +G K L + ++ E +R++D+FE++ E + V FR H
Sbjct: 378 LKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLSTVLFRATHETAD 437
Query: 432 LGRRFRSLKLWFVLRLLGVKYLQEYI 457
L ++L+L + R G+ L E I
Sbjct: 438 LDELNKALRLEALTR--GIAVLGETI 461
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 249 DLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVEL- 307
D+ ++ GTT D +EE+ ++ ++ ++++HVDAA+ G +++Y KGV
Sbjct: 171 DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYK 230
Query: 308 ------ADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHW 361
DS +PHK + KD + +VD YL +Q +
Sbjct: 231 FDFSLGVDSITIDPHKXGHCPIPSGGILFKDIGY-KRYLDVDAPYLTETRQATI------ 283
Query: 362 QIPLGRR--FRSLKLWFVLRLLG----VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE 415
LG R F + VLR LG K + E + L K+ ++ + F+ + E
Sbjct: 284 ---LGTRVGFGGACTYAVLRYLGREGQRKIVNECXENTLYLYKKLKE-----NNFKPVIE 335
Query: 416 VLMGLVCFRLKHWQ 429
++ +V + ++
Sbjct: 336 PILNIVAIEDEDYK 349
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 243 DREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAG 290
D E +++V+ G N + D L ++ ++C++KDV L +D G
Sbjct: 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTG 217
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 490 FRLKGPNEINEKLLKRINGNGKIHLVPSKIR 520
F KGP EINE+L+K ++ N + L P K++
Sbjct: 243 FPEKGPEEINEELMKNVSHNPLLLLTPQKVK 273
>pdb|3PH1|A Chain A, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|B Chain B, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|C Chain C, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3PH1|D Chain D, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|A Chain A, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|B Chain B, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|C Chain C, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
pdb|3RQA|D Chain D, The Crystal Structure Of A Pathogenic Protein From The
Xanthomonas Campestris Reveals A New Tetrameric Pilz
Domain Self-Assembled Via A Unusual Helical Bundle
Length = 191
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
Query: 103 PAIVADILSDSIAC-----IGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGG 157
PA ++ +D+++C GF A P +L LG++ DL E + G+
Sbjct: 12 PAADTELFADTLSCELRLPAGFHVTADPGSHATAETLLRSLGQVEDLRSEDSSEERGELP 71
Query: 158 GVIQGTASEATLV-ALLGAKAK-TMQRVKEAHPDWKDSDI-IANLIASPACTELEVVML- 213
++Q ++ L+ AL+G + + R+ W I +A+ A P T V++
Sbjct: 72 LLVQRMDAKLDLILALIGRLVRQSDTRLALGTVHWSVRGIRLASPHAHPPGTTGSVLLQP 131
Query: 214 -DWLGKMLDLPKEFLACS 230
DWL ++L LP + LA +
Sbjct: 132 SDWLPELLQLPADVLASA 149
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 257 LGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENR 299
L T +C DC++++ ++ +++D+ + VDA+Y PEN+
Sbjct: 202 LKTDSCDVNDCVQQVVELLQERDI-VPVDASYEVKELYVPENK 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,237,629
Number of Sequences: 62578
Number of extensions: 740436
Number of successful extensions: 1993
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 30
length of query: 561
length of database: 14,973,337
effective HSP length: 104
effective length of query: 457
effective length of database: 8,465,225
effective search space: 3868607825
effective search space used: 3868607825
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)