RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9807
(561 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 474 bits (1223), Expect = e-165
Identities = 200/392 (51%), Positives = 246/392 (62%), Gaps = 35/392 (8%)
Query: 51 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADIL 110
PGYLRPL+PE AP P+ +++ DI + IMPGVT WHSP FHAYFP NSYP+++ D+L
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 111 SDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV 170
SD+I C GFTW +SPACTELE V++DWL KML LPKEFL GGGV+QG +SE+ L+
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGE--GGGVLQGGSSESNLL 118
Query: 171 ALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPAC------------TELEVVMLDWLGK 218
ALL A+ K ++R+K A S EL + D GK
Sbjct: 119 ALLAARTKWIRRMKAAGKPSLGK---LVAYTSDQAHSSIEKAALIAGVELREIPTDENGK 175
Query: 219 ML--DLPKEFLACSGGKGGGVIQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCR 276
M DL K + G + V ATLGTT AFD L+E+G +C
Sbjct: 176 MRGMDLEKAIEEDK--ENGLIP------------FFVCATLGTTGSGAFDPLQELGDICN 221
Query: 277 QKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWV 336
+ D+WLHVDAAYAGSAFICPE R+ + G+E ADSF+FNPHKWMLV DCSA+W++D +
Sbjct: 222 KYDLWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGAL 281
Query: 337 VNAFNVDPLYLKHDQQGS--APDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQI 394
A +P YL H+ + S A DY WQIPL RRFR LKLWFVLR GV+ LQ IR+ +
Sbjct: 282 QQALQFNPEYLGHNDKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHV 341
Query: 395 SLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 426
LAK FE LVR D RFE+ E +GLVCFRLK
Sbjct: 342 ELAKYFEALVRKDSRFEICAERGLGLVCFRLK 373
Score = 105 bits (263), Expect = 2e-24
Identities = 44/69 (63%), Positives = 49/69 (71%)
Query: 425 LKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 484
WQIPL RRFR LKLWFVLR GV+ LQ IR+ + LAK FE LVR D RFE+ E
Sbjct: 305 YGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDSRFEICAERG 364
Query: 485 MGLVCFRLK 493
+GLVCFRLK
Sbjct: 365 LGLVCFRLK 373
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 409 bits (1053), Expect = e-138
Identities = 187/425 (44%), Positives = 263/425 (61%), Gaps = 35/425 (8%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
D + ++ MVD++ +Y ++I + VL V+PGYLR L+P++AP+ P+T +V+ D++
Sbjct: 11 DAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQ 70
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
I+PGVTHW SP + AY+P+ +S + ++LS + +GF+WI SPA TELE+++LDW
Sbjct: 71 AKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDW 130
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV-------------K 184
L K+L+LP++FL S G GGGVIQGTASEA LV LL A+ + +++V
Sbjct: 131 LAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASD 188
Query: 185 EAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDR 244
+ H + + IA I C L+ D + ++
Sbjct: 189 QTHSALQKACQIAG-IHPENCRLLKT----------DSSTNYALAPE-----LLSEAIST 232
Query: 245 EMCSDLLQ--VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLM 302
++ S L+ + AT+GTT+ A D L E+G++ + +W HVDAAYAGSA ICPE R+ +
Sbjct: 233 DLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYI 292
Query: 303 KGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKH--DQQGSAPDYRH 360
GVE ADSFN N HKW L FDCS +W+KD + ++ + + +P +LK+ Q S DY+
Sbjct: 293 DGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKD 352
Query: 361 WQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGL 420
WQIPLGRRFRSLKLW VLRL GV+ LQ YIR I LAKEFEQLV D RFEV+ + L
Sbjct: 353 WQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSL 412
Query: 421 VCFRL 425
VCFRL
Sbjct: 413 VCFRL 417
Score = 169 bits (429), Expect = 3e-46
Identities = 132/411 (32%), Positives = 186/411 (45%), Gaps = 91/411 (22%)
Query: 200 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQVVATLGT 259
I SPA TELE+++LDWL K+L+LP++FL S G GGGVIQ + + L+ ++A
Sbjct: 115 ITSPAATELEMIVLDWLAKLLNLPEQFL--STGNGGGVIQGTASEAV---LVVLLAARDR 169
Query: 260 TNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWM 319
L ++G+ +K V D ++ L K ++A P
Sbjct: 170 V-------LRKVGKNALEKLVVYASDQTHSA----------LQKACQIAGIH---PENCR 209
Query: 320 LVTFDCSAMWLKDPSWVVNAFN-----------------------VDPL----------- 345
L+ D S + P + A + VDPL
Sbjct: 210 LLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG 269
Query: 346 ---YLKHDQQGSA---PDYRHW--QIPLGRRFR-SLKLWFVLR----LLGVKYLQEYIRK 392
++ GSA P+YRH+ + F + WF+ LL VK + + +
Sbjct: 270 MWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKD-RNALIQ 328
Query: 393 QISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKY 452
+S EF + S V Y K WQIPLGRRFRSLKLW VLRL GV+
Sbjct: 329 SLSTNPEFLKNKASQANSVVDY-----------KDWQIPLGRRFRSLKLWMVLRLYGVEN 377
Query: 453 LQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGP-------NEINEKLLKR 505
LQ YIR I LAKEFEQLV D RFEV+ + LVCFRL P N++N LL
Sbjct: 378 LQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDA 437
Query: 506 INGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWNEIKTLTEELLKE 556
+N +GKI + + + Y LR AV + +E + +W ++ +LL +
Sbjct: 438 VNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 332 bits (852), Expect = e-107
Identities = 162/410 (39%), Positives = 245/410 (59%), Gaps = 23/410 (5%)
Query: 29 MVDYVGNYLENIRDRR----VLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGV 84
MVD++ +Y +N++D VL V+PGYLR ++P++AP+ P++ +E++ D+ + IMPG+
Sbjct: 66 MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGI 125
Query: 85 THWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDL 144
THW SP + AY+ ++ S + ++L+ ++ +GFTW+ SPA TELE+++LDWL K+L L
Sbjct: 126 THWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQL 185
Query: 145 PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPA 204
P FL S G GGGVIQGT EA LV +L A+ + +++V + ++ L+ +
Sbjct: 186 PDHFL--STGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT--------LLPQLVVYGS 235
Query: 205 -CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ------VVATL 257
T +G + + L G+ + + DL + + AT+
Sbjct: 236 DQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATV 295
Query: 258 GTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHK 317
GTT+ A D L +G + ++ +WLHVDAAYAG+A ICPE R + G+E ADSFN N HK
Sbjct: 296 GTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHK 355
Query: 318 WMLVTFDCSAMWLKDPSWVVNAFNVDPLYL--KHDQQGSAPDYRHWQIPLGRRFRSLKLW 375
W+ CS +W+KD +++A +P YL K ++ + +Y+ WQI L RRFRSLKLW
Sbjct: 356 WLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLW 415
Query: 376 FVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRL 425
VLRL G + L+ +IR ++LAK FE V D FEV+ LVCFRL
Sbjct: 416 MVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRL 465
Score = 104 bits (261), Expect = 9e-24
Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 426 KHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 485
K WQI L RRFRSLKLW VLRL G + L+ +IR ++LAK FE V D FEV+
Sbjct: 399 KDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF 458
Query: 486 GLVCFRL-------KGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSD 538
LVCFRL NE N +LL +N GKI + + + + LR AV + +E
Sbjct: 459 SLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKH 518
Query: 539 MIYSWNEIK 547
+ +W I+
Sbjct: 519 VTEAWQIIQ 527
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 271 bits (695), Expect = 1e-86
Identities = 117/466 (25%), Positives = 177/466 (37%), Gaps = 129/466 (27%)
Query: 92 FHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLAC 151
F A F T PA++ ++L+ + I FTW SPA TE+E +++WL K+ LP E
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE---- 56
Query: 152 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPAC-TELEV 210
GV SE+ L+ALL A+ + +R+K D ++ S +E
Sbjct: 57 ---DADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDK---LVIVCSDQAHVSVEK 110
Query: 211 VMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ-------VVATLGTTNCC 263
K+ +P + G + ++ + VVAT GTT+
Sbjct: 111 AAAYLDVKVRLVPVD--------EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTG 162
Query: 264 AFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWMLVTF 323
A D LEEI + + D+WLHVDAAY G PE R+L G+E DS + +PHK+ LV
Sbjct: 163 AIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL 222
Query: 324 DCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGV 383
CSA+ R+LKLW LR G
Sbjct: 223 GCSAVL---------------------------------------VRALKLWATLRRFGR 243
Query: 384 KYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWF 443
E+I + + LAK +L+R+D FE++ E + LVCFRLK
Sbjct: 244 DGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP---------------- 287
Query: 444 VLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGPNEINEKLL 503
S E+ Y++ ++L
Sbjct: 288 -----------------------------SVKLDELNYDLS---------------DRLN 303
Query: 504 KRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWNEIKTL 549
+R G H+ + + LR V + + D +I+
Sbjct: 304 ER----GGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIERA 345
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 177 bits (450), Expect = 2e-49
Identities = 97/446 (21%), Positives = 164/446 (36%), Gaps = 61/446 (13%)
Query: 36 YLENIRDRRVLPTVEPGYLRPLIPETAPD--TPDTWQEVMSDIER-VIMPGVTHWHSPKF 92
R ++ P + AP+ P +EV+ ++ +I + P+
Sbjct: 7 KDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPL--EEVLDELAELLIKDELYLDGHPRA 64
Query: 93 HAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACS 152
+ P + A++L ++ SPA ELE +++ L +L P+E
Sbjct: 65 NLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS--- 121
Query: 153 GGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA---NLIASPA---CT 206
G +EA L+ALL A+ + +R +S N++ S
Sbjct: 122 -----GTFTSGGTEANLLALLAARERWRKR------ALAESGKPGGKPNIVCSETAHFSF 170
Query: 207 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ-----------VVA 255
E L LG L V +D + D L+ VV
Sbjct: 171 EKAARYLG-LG--LRR--------------VPTVPTDYRIDVDALEEAIDENTIGGVVVG 213
Query: 256 TLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMK-GVELADSFNFN 314
T GTT+ + D +EE+ + + +WLHVDAA+ G E G+E DS +
Sbjct: 214 TAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVD 273
Query: 315 PHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKL 374
HK+ L C + +D + YL G P++ GR ++L L
Sbjct: 274 GHKYGLAPIGCGVVLFRDEEALRRILIFADYYL---PGGGIPNFTILGSRPGR--QALAL 328
Query: 375 WFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK--HWQIPL 432
+ LR LG + ++ + + + LA+ + + FE++ E + +V FRLK +
Sbjct: 329 YANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLAD 388
Query: 433 GRRFRSLKLWFVLRLLGVKYLQEYIR 458
+ W V L K L
Sbjct: 389 LSERLDRRGWQVPAQLLPKGLAIVFG 414
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 74.0 bits (182), Expect = 7e-14
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 11/188 (5%)
Query: 244 REMCSDL-------LQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICP 296
R+ C++L L +V GTT D L+E+ + ++ HVDAA+ G+ +
Sbjct: 253 RDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSN 312
Query: 297 ENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAP 356
R+L+KG+E ADS + HK + V + KDP+ ++A Y+ ++GS
Sbjct: 313 TYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPAL-MSAIEHHAEYIL--RKGSKD 369
Query: 357 DYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV 416
H + R ++ ++ L ++G K + I + I AK F L++ FE++ E
Sbjct: 370 LGSH-TLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP 428
Query: 417 LMGLVCFR 424
+ L+ +R
Sbjct: 429 ELCLLTYR 436
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 58.2 bits (141), Expect = 6e-10
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFN 312
+V T TT+ L+EI ++ ++ + L VDAA AG A P L+ AD
Sbjct: 96 IVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG--VLI-PEGGADVVT 152
Query: 313 FNPHKWMLVTFDCSAMWLK 331
F+ HK + + +K
Sbjct: 153 FSLHKNLGG-EGGGVVIVK 170
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 59.3 bits (144), Expect = 2e-09
Identities = 51/231 (22%), Positives = 86/231 (37%), Gaps = 50/231 (21%)
Query: 242 SDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYL 301
D + +V GTT D +EE+ ++ + ++LHVDAA+ G F+ P +L
Sbjct: 151 DDNTIG-----IVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGG--FVIP---FL 200
Query: 302 MKGVELADSFNF----------NPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQ 351
KG F+F +PHK L + + S+ + +VD YL +
Sbjct: 201 KKGYNPPP-FDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSY-LKYLSVDAPYLTVKK 258
Query: 352 QGSAPDYRHWQIPLGRR--FRSLKLWFVLRLLG-------VKYLQEYIRKQISLAKEFEQ 402
Q + G R + + V++ LG V E R + K+
Sbjct: 259 QATI---------TGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-- 307
Query: 403 LVRSDDRFEVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYL 453
FE + E ++ +V F + R+ + W+V K L
Sbjct: 308 ------GFEPVIEPVLNIVAFEVD--DPEEVRKKLRDRGWYVSVTRCPKAL 350
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 48.3 bits (116), Expect = 5e-06
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 38/190 (20%)
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICP--ENRYL----MKGVE 306
+V GTT D + E+ ++ + ++LHVDAA+ G F+ P ++ + GV
Sbjct: 155 IVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFSLPGV- 211
Query: 307 LADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLG 366
DS +PHK L + +D S+ ++A VD YL +Q + G
Sbjct: 212 --DSITIDPHKMGLAPIPAGGILFRDESY-LDALAVDTPYLTSKKQATL---------TG 259
Query: 367 RR--FRSLKLWFVLRLLG-------VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 417
R + V++ LG V+ E R LA+E ++ FE + E +
Sbjct: 260 TRSGAGVAATYAVMKYLGREGYRKVVERCMENTRW---LAEELKER-----GFEPVIEPV 311
Query: 418 MGLVCFRLKH 427
+ +V F +
Sbjct: 312 LNIVAFDDPN 321
Score = 29.1 bits (66), Expect = 7.2
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 23/96 (23%)
Query: 442 WFVLRLLG-------VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKG 494
+ V++ LG V+ E R LA+E ++ FE + E ++ +V F
Sbjct: 270 YAVMKYLGREGYRKVVERCMENTRW---LAEELKER-----GFEPVIEPVLNIVAFDDPN 321
Query: 495 PNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVC 530
P+E+ EKL +R S R LR+ VC
Sbjct: 322 PDEVREKLRER-------GWRVSVTRCPEALRI-VC 349
>gnl|CDD|221229 pfam11799, IMS_C, impB/mucB/samB family C-terminal. These proteins
are involved in UV protection.
Length = 136
Score = 37.2 bits (86), Expect = 0.006
Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 16/144 (11%)
Query: 365 LGRRFRSLK-LWFVLRLLGVKYLQEY---IRKQISLAKEFEQLVRSDDRFEVIYEVLMGL 420
L +RF + G+ RK IS + F + + + E + L
Sbjct: 3 LQKRFGGVTGERLYNLARGIDDDPVEPREERKSISSERTFPRDLTDREELEALLLRLAEE 62
Query: 421 VCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVI 480
+ RL+ + R ++KL + + + +L ++ + + +
Sbjct: 63 LAERLRRRGL-AARTV-TVKLRYSDT----------VTRSRTLKTRQKRPTLPSNDTDEL 110
Query: 481 YEVLMGLVCFRLKGPNEINEKLLK 504
E + L+ L+ +
Sbjct: 111 LEAALELLEQALRELFVRGAPIRL 134
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 38.2 bits (89), Expect = 0.009
Identities = 52/243 (21%), Positives = 95/243 (39%), Gaps = 39/243 (16%)
Query: 125 PACTELEVVMLDWLGKMLDLP---KEFLACSGGKGGGVIQGTA--SEATLVALLGAKAKT 179
P E+E ++ L + P E + S T SEA ++ L K +
Sbjct: 76 PQTAEIENRCVNMLADLWHAPAKDAEAVGTS----------TIGSSEAIMLGGLAMKWRW 125
Query: 180 MQRVKEAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ 239
+R++ A K +D NL+ V + + D+ + G+ VI
Sbjct: 126 RKRMEAAG---KPTDK-PNLVMGSNVQ----VCWEKFARYFDVELREVPMDPGRY--VID 175
Query: 240 RKSDREMCSD-LLQVVATLGTTNCCAFDCLEEIGQVCRQK------DVWLHVDAAYAG-- 290
+ E + + VV LGTT ++ ++ + + D+ +HVDAA G
Sbjct: 176 PEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFI 235
Query: 291 SAFICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVN--AFNVDPLYLK 348
+ F+ P+ + + + S N + HK+ LV + +D + F+V+ YL
Sbjct: 236 APFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVN--YLG 292
Query: 349 HDQ 351
D+
Sbjct: 293 GDE 295
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 37.2 bits (87), Expect = 0.021
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 268 LEEIGQVCRQKDVWLHVDAA 287
+ EIG++C+++ + HVDA
Sbjct: 160 IAEIGEICKERGILFHVDAV 179
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 35.3 bits (82), Expect = 0.088
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 268 LEEIGQVCRQKDVWLHVDAA 287
+ IG++CR++ + HVDAA
Sbjct: 163 IAAIGEICRERGIIFHVDAA 182
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 33.9 bits (78), Expect = 0.21
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYA 289
+EEIG++CR+K V H DAA A
Sbjct: 157 VEEIGELCREKKVLFHTDAAQA 178
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 33.1 bits (76), Expect = 0.34
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 253 VVATLGTTNCCAFDCLEEIGQVCRQ---KDVWLHVDAAYAGS--AFICPENRY-LMKGVE 306
+ A +GTT A D ++EI ++ ++ D ++H DAA +G F+ + G+
Sbjct: 164 IFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGI- 222
Query: 307 LADSFNFNPHK 317
DS + HK
Sbjct: 223 --DSIAISGHK 231
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 32.5 bits (74), Expect = 0.57
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 268 LEEIGQVCRQKDVWLHVDAA 287
+ IG++CR++ V+ HVDAA
Sbjct: 161 IAAIGEICRERKVFFHVDAA 180
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 32.3 bits (74), Expect = 0.63
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 152 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIAS 202
G G + GT+ A VA GA A +K+AHPDW + I A L+ +
Sbjct: 224 GSGTGYARMSGTSMAAPHVA--GAAA----LLKQAHPDWSPAQIKAALMNT 268
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 32.3 bits (74), Expect = 0.74
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWML 320
++EI ++ + + VDAA A ++ + D F+ HKW+L
Sbjct: 181 VKEIAELAHEHGALVLVDAAQAAGHLPID-----VQELG-CDFLAFSGHKWLL 227
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 32.1 bits (73), Expect = 0.86
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 236 GVIQRKSDREMCSDLLQVVATLGTTNCCA--FDCLEEIGQVCRQKDVWLHVDAAYA 289
G I + RE ++ +V+ + N F ++EIG++C+++ V H DA A
Sbjct: 126 GTITAEQVREAITEKTALVSVMWANNETGMIFP-IKEIGEICKERGVLFHTDAVQA 180
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 31.7 bits (72), Expect = 1.1
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 39/121 (32%)
Query: 250 LLQVVATLGTTNCCAFDCLEEIGQVCRQKDV------WLHVDAAYAGSA----------- 292
+L VV +G+T A D +++I + R K + +LHVDAAY G
Sbjct: 279 ILGVVGVVGSTEEGAVDGIDKIVAL-RNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNF 337
Query: 293 ---------------------FICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLK 331
+I E K + A+S +PHK + + + ++
Sbjct: 338 IPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQ 397
Query: 332 D 332
D
Sbjct: 398 D 398
>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic
pyrophosphatase; Provisional.
Length = 546
Score = 30.6 bits (70), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 109 ILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDL-PKEF 148
ILSD++ F SP TEL+ +WL ++ + P+EF
Sbjct: 382 ILSDTL---LFK---SPTTTELDREAAEWLAEIAGIDPEEF 416
Score = 29.4 bits (67), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 202 SPACTELEVVMLDWLGKMLDL-PKEF 226
SP TEL+ +WL ++ + P+EF
Sbjct: 391 SPTTTELDREAAEWLAEIAGIDPEEF 416
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 29.7 bits (67), Expect = 2.6
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 15 IMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMS 74
+ + +F + + D Y E+ R P VEP P P E+
Sbjct: 3 FLDKLKKFFGYF-PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPAR-MEMRG 60
Query: 75 DIERVIMPGVT 85
++ V MP V
Sbjct: 61 NV--VNMPRVA 69
>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
Length = 356
Score = 30.1 bits (68), Expect = 3.0
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 31/94 (32%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWM-------- 319
L+ I + C+ ++ L +D A+ FI P+ + +LAD NPH W+
Sbjct: 164 LQAIAERCKSLNIALILDEAFID--FI-PDETGFIP--QLAD----NPHLWVLRSLTKFY 214
Query: 320 ---------LVTFDCSAM-WLKD---PSWVVNAF 340
LV D +A+ ++ P W +NAF
Sbjct: 215 AIPGLRLGYLVNSDDAAVARMRRQQMP-WSINAF 247
>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium
transferase. In the archaea and eukaryotes, the
conversion of the mischarged serine to selenocysteine
(Sec) on its tRNA is accomplished in two steps. This
enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase,
acts second, after a phosphophorylation step catalyzed
by a homolog of the bacterial SelA protein [Protein
synthesis, tRNA aminoacylation].
Length = 444
Score = 30.0 bits (68), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 253 VVATLGTTNCCA---FDCLEEIGQVCRQKDVWLHVDAAYA 289
++ L TT+C A D +EEI ++C D+ V+ AY
Sbjct: 206 ILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYG 245
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 30.0 bits (68), Expect = 3.7
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 268 LEEIGQVCRQKDVWLHVDAAY---AGSAFICPENRYLMKGVELADSFNF 313
L+ I + ++ + LH+D A A +A Y DS +F
Sbjct: 148 LKAISALAKENGLPLHLDGARLANAAAALGVALKTYKS----GVDSVSF 192
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 29.9 bits (68), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 265 FDCLEEIGQVCRQKDVWLHVDAAYAGSA 292
D LE I VC++ + LH+D A +A
Sbjct: 149 LDELEAISAVCKEHGLPLHMDGARLANA 176
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 29.9 bits (68), Expect = 3.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 268 LEEIGQVCRQKDVWLHVDAA 287
+EEIG++ + + VDAA
Sbjct: 158 VEEIGKLAHEYGALVVVDAA 177
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 29.5 bits (67), Expect = 4.4
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 259 TTNCC-----AFDCLEEIGQVCRQKDVWLHVDAA 287
T N + + L EI + R+ + LH+D A
Sbjct: 137 THNSAGGQVVSLEELREIRAIAREHGIPLHLDGA 170
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 29.6 bits (67), Expect = 4.9
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAF 293
L+ I ++ R+ D+ + D Y +
Sbjct: 185 LKAIVELAREHDIIIISDEIYEELVY 210
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 29.1 bits (65), Expect = 6.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 253 VVATLGTTNCCA---FDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPE 297
++A L TT+C A D ++EI ++C + DV V+ AY +
Sbjct: 156 ILAVLSTTSCFAPRSPDRVKEIAKICAEYDVPHLVNGAYGIQSEKYIH 203
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 28.8 bits (65), Expect = 6.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAF 293
LE++ + ++ ++ L VD AYAG F
Sbjct: 164 LEKLLDLAKEHNILLLVDEAYAGFVF 189
>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
Length = 353
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 12/60 (20%)
Query: 259 TTNCCAFDCL-----EEIGQVCRQKDVWLHVDAAYAGSAFIC---PENRYLMKGVELADS 310
T C CL +++G++ ++ + LH+D A +A + P +R V+ ADS
Sbjct: 146 THANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRL----VKAADS 201
>gnl|CDD|217711 pfam03748, FliL, Flagellar basal body-associated protein FliL.
This FliL protein controls the rotational direction of
the flagella during chemotaxis. FliL is a cytoplasmic
membrane protein associated with the basal body.
Length = 99
Score = 27.1 bits (61), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 492 LKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAV 529
+G ++ E+LL+RIN L K+ DV F +
Sbjct: 65 PEGKEKLKEELLERIN----EVLGEGKVEDVLFTSFVI 98
>gnl|CDD|235864 PRK06807, PRK06807, DNA polymerase III subunit epsilon; Validated.
Length = 313
Score = 28.6 bits (64), Expect = 7.8
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 15/118 (12%)
Query: 439 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGPNEI 498
++ V L +K +R ++ K ++ V +D + + E+ L C
Sbjct: 207 IRCMNVGSYLDIKAFYPVMRLKV---KGRKKYVLTDILEDDVKEICTSLKC--------- 254
Query: 499 NEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWNEIKTLTEELLKE 556
E LK GN +I L + + DV L + +Y ++ + + +E LKE
Sbjct: 255 -EPALKSEVGNTRIML--NSLEDVLKLESYILEQYDFVLQALHDYKNNEMNADEKLKE 309
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.436
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,838,858
Number of extensions: 3006945
Number of successful extensions: 2726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 60
Length of query: 561
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 459
Effective length of database: 6,413,494
Effective search space: 2943793746
Effective search space used: 2943793746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.9 bits)