RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9807
(561 letters)
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 542 bits (1397), Expect = 0.0
Identities = 278/414 (67%), Positives = 323/414 (78%), Gaps = 5/414 (1%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ EFKDFAK MVD++ YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIE
Sbjct: 2 EAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
RVIMPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DW
Sbjct: 62 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W + I+
Sbjct: 122 LGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG 181
Query: 198 NLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRK---SDREMCSDLLQVV 254
L+ C++ ++ G + + + + G K D V
Sbjct: 182 KLVG--YCSDQAHSSVERAGLLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAV 239
Query: 255 ATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFN 314
TLGTTN CAFD L+E G V + ++W+HVDAAYAGSAFICPE R+LMKG+E ADSFNFN
Sbjct: 240 VTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFN 299
Query: 315 PHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKL 374
PHKWMLV FDCSAMWLKDPSWVVNAFNVDPLYLKHD QGSAPDYRHWQIPLGRRFR+LKL
Sbjct: 300 PHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKL 359
Query: 375 WFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHW 428
WFVLRL GV+ LQ +IR+ + AK+F L +D RFE+ E+ MGLVCFRLK
Sbjct: 360 WFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKGS 413
Score = 199 bits (508), Expect = 8e-58
Identities = 84/133 (63%), Positives = 105/133 (78%)
Query: 425 LKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 484
+HWQIPLGRRFR+LKLWFVLRL GV+ LQ +IR+ + AK+F L +D RFE+ E+
Sbjct: 343 YRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 402
Query: 485 MGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWN 544
MGLVCFRLKG NE NE LLKRING G IHLVP+KI+DVYFLRMA+CSR+++S DM YSW
Sbjct: 403 MGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462
Query: 545 EIKTLTEELLKEE 557
E+ +E+ +E+
Sbjct: 463 EVSAAADEMEQEQ 475
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 540 bits (1392), Expect = 0.0
Identities = 210/560 (37%), Positives = 299/560 (53%), Gaps = 106/560 (18%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ E+++ + MVDY+ YL +R+RRV P V+PGYLR +PE+AP+ PD+W + DIE
Sbjct: 7 EPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIE 66
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
R+IMPGV HW SP HAY+P S+P+++ D+L+D+I C+GFTW +SPACTELE+ ++DW
Sbjct: 67 RIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDW 126
Query: 138 LGKMLDLPKEFLAC-SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII 196
L KML LP+ FL +GGGV+Q T SE+TL+ALL A+ + +K + PD +S +
Sbjct: 127 LAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN 186
Query: 197 ANLIA-----SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLL 251
A L+A + + E K + + + + + L
Sbjct: 187 ARLVAYASDQAHSSVE----------KAGLI--------SLVKMKFLPVDDNFSLRGEAL 228
Query: 252 Q---------------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICP 296
Q V ATLGTT CAFDCL E+G +C ++ +WLH+DAAYAG+AF+CP
Sbjct: 229 QKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCP 288
Query: 297 ENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAP 356
E R +KG+E ADSF FNP KWM+V FDC+ W+KD + F+V+P+YL+H G A
Sbjct: 289 EFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVAT 348
Query: 357 DYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV 416
D+ HWQIPL RRFRS+KLWFV+R GVK LQ ++R +AK FE LVR+D FE+ +
Sbjct: 349 DFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR 408
Query: 417 LMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDR 476
+GLV FRLK L E + K+I+ R
Sbjct: 409 HLGLVVFRLKGPNS----------------------LTENVLKEIA----------KAGR 436
Query: 477 FEVIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSES 536
+I + + R V S+++
Sbjct: 437 LFLIPATIQDKLIIRF-----------------------------------TVTSQFTTR 461
Query: 537 SDMIYSWNEIKTLTEELLKE 556
D++ WN I+ +L +
Sbjct: 462 DDILRDWNLIRDAATLILSQ 481
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 530 bits (1367), Expect = 0.0
Identities = 237/433 (54%), Positives = 297/433 (68%), Gaps = 40/433 (9%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ ++F+ K MVDY+ +YLE I R+V P V+PGYLRPLIP TAP PDT+++++ D+E
Sbjct: 2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML LP+ FLA G+GGGVIQG+ASEATLVALL A+ K ++R++ A P ++
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 198 NLIA-----SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ 252
L+A + + E + + GG I M + LQ
Sbjct: 182 KLVAYASDQAHSSVE----------RAGLI--------GGVKLKAIPSDGKFAMRASALQ 223
Query: 253 ---------------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPE 297
VVATLGTT+CC+FD L E+G +C ++D+WLHVDAAYAGSAFICPE
Sbjct: 224 EALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPE 283
Query: 298 NRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSA-- 355
R+L+ GVE ADSFNFNPHKW+LV FDCSAMW+K + + AF +DP+YLKH QGS
Sbjct: 284 FRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI 343
Query: 356 PDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE 415
DYRHWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D RFEV E
Sbjct: 344 TDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE 403
Query: 416 VLMGLVCFRLKHW 428
V +GLVCFRLK
Sbjct: 404 VTLGLVCFRLKGS 416
Score = 199 bits (508), Expect = 8e-58
Identities = 78/137 (56%), Positives = 96/137 (70%)
Query: 425 LKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 484
+HWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D RFEV EV
Sbjct: 346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVT 405
Query: 485 MGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSWN 544
+GLVCFRLKG + +NE LL+RIN KIHLVP ++R + LR A+CSR ES + +W
Sbjct: 406 LGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWE 465
Query: 545 EIKTLTEELLKEEKEKA 561
I+ L ELL E+ KA
Sbjct: 466 HIRGLAAELLAAEEGKA 482
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 522 bits (1347), Expect = 0.0
Identities = 110/569 (19%), Positives = 203/569 (35%), Gaps = 114/569 (20%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEV 72
+ F +VD + NY+ DR +VL P L + D P++ +++
Sbjct: 17 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76
Query: 73 MSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEV 132
+ D + GV H P+F T + + L+ + FT+ +P +E
Sbjct: 77 LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQ 135
Query: 133 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKD 192
+ L + +++ G G+ + + + +++ A+ K VK
Sbjct: 136 ITLKKMREIVGWS-------SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA--- 185
Query: 193 SDIIANLIA-----SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDRE-- 245
+ L+ S + L G VI K +
Sbjct: 186 --AVPKLVLFTSEQSHYSIKKAGAAL-----------------GFGTDNVILIKCNERGK 226
Query: 246 MCSDLLQ---------------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAG 290
+ + V AT GTT AFD ++EI +C + ++WLHVDAA+ G
Sbjct: 227 IIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGG 286
Query: 291 SAFICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKH- 349
+ ++R+ + G+E A+S +NPHK M V CSA+ +K+ + + YL
Sbjct: 287 GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQP 346
Query: 350 -DQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD 408
Q + D I GR K W + + G + I K + LA+ +++ +
Sbjct: 347 DKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNRE 406
Query: 409 RFEVIY--EVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKE 466
FE+++ E VCF Y+ + +R +
Sbjct: 407 EFEMVFNGEPEHTNVCFW---------------------------YIPQSLRGVPDSPQR 439
Query: 467 FEQLVRSDDRFEVIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRD-VYFL 525
E+L +++ K+ + +G + D F
Sbjct: 440 REKL-------------------------HKVAPKIKALMMESGTTMVGYQPQGDKANFF 474
Query: 526 RMAVCSRYSESSDMIYSWNEIKTLTEELL 554
RM + + + SD+ + EI+ L ++L
Sbjct: 475 RMVISNPAATQSDIDFLIEEIERLGQDLH 503
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 501 bits (1291), Expect = e-174
Identities = 111/555 (20%), Positives = 203/555 (36%), Gaps = 101/555 (18%)
Query: 20 NEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERV 79
+ +VD ++ ++V EP L+ L+ ++ ++++ V
Sbjct: 41 ALLRAVFGVVVDEAIQKGTSVS-QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99
Query: 80 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 139
I V H P+F + A+ I+++S+ +T+ +P +E +L L
Sbjct: 100 IRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLR 158
Query: 140 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 199
++ G G+ S + + A+ A+ + K+ + L
Sbjct: 159 ALVGWSS---------GDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLR-----TLPPL 204
Query: 200 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDRE--MCSDLLQ----- 252
++ + L L + V K+D M + L+
Sbjct: 205 AL--FTSKECHYSIQKGAAFLGLGTD----------SVRVVKADERGKMVPEDLERQIGM 252
Query: 253 ----------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLM 302
V AT GTT AFD LE I VC++ +WLHVDAA+ GS + +R+L+
Sbjct: 253 AEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLL 312
Query: 303 KGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVV-NAFNVDPLYLKH--DQQGSAPDYR 359
G++ ADS +NPHK + CSA+ L+D S ++ YL A D
Sbjct: 313 DGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTG 372
Query: 360 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 419
+ GRR LKLW + + G + L+ I + LA+ + ++ + FE++ E
Sbjct: 373 DKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFV 432
Query: 420 LVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEV 479
VCF ++ +R + E+L
Sbjct: 433 NVCFW---------------------------FVPPSLRGKQESPDYHERL--------- 456
Query: 480 IYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRD-VYFLRMAVCSRYSESSD 538
+++ L +R+ G + + F R+ V + +D
Sbjct: 457 ----------------SKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCAD 500
Query: 539 MIYSWNEIKTLTEEL 553
M + NE++ L ++L
Sbjct: 501 MDFLLNELERLGQDL 515
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 475 bits (1225), Expect = e-164
Identities = 94/556 (16%), Positives = 187/556 (33%), Gaps = 107/556 (19%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPE-TAPDTPDTWQEVMSDI 76
EF + + E + ++P L I + + V+ D+
Sbjct: 30 GSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDV 87
Query: 77 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLD 136
++ P A+ T PA+ A+ + ++ +W + + T +E +++
Sbjct: 88 AELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVN 147
Query: 137 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDI 195
WL DL ++ G+ +++ + L+ A+ ++ D
Sbjct: 148 WLCDKYDLSEK--------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDY 199
Query: 196 IANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDRE--MCSDLLQ- 252
L C++ + + L ++ V+ ++ + M L
Sbjct: 200 ADKLRI--VCSKKSHFTVQKSASWMGLGEK----------AVMTVDANADGTMDITKLDE 247
Query: 253 --------------VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPEN 298
+V T GTT+ A D L+ I + + D+W+HVD AY G A I +
Sbjct: 248 VIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSH 306
Query: 299 RYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDY 358
+ +KGVE A S + + HK T C A+ + D S YL + P+
Sbjct: 307 KSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKS-NFKFLLHHADYLNREHDEL-PNL 364
Query: 359 RHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 418
I +RF +LK++ ++ +G K L + ++ E ++R++D+FE++ E +
Sbjct: 365 VDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSL 424
Query: 419 GLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFE 478
V FR H L L + +R + +
Sbjct: 425 STVLFRATHETADLDE------------------LNKALRLEA----------LTRGIAV 456
Query: 479 VIYEVLMGLVCFRLKGPNEINEKLLKRINGNGKIHLVPSKIRDVYFLRMAVCSRYSESSD 538
+ ++ G + + + +SD
Sbjct: 457 LGETIVDGKTALK-----------------------------------FTILNPCLTTSD 481
Query: 539 MIYSWNEIKTLTEELL 554
++I L EL+
Sbjct: 482 FESLLSKINMLAVELV 497
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 125 bits (315), Expect = 6e-31
Identities = 52/410 (12%), Positives = 125/410 (30%), Gaps = 47/410 (11%)
Query: 33 VGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI-MPGVTHWHSPK 91
V ++I D ++ + P +P +V+ ++ ++ + T W K
Sbjct: 14 VTKVKQSIEDE-LIRSDSQLMNFPQLPSNGIP----QDDVIEELNKLNDLIPHTQWKEGK 68
Query: 92 FHAYFPTANSYPA-IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLA 150
+ PA ++E ++ + +M + P +
Sbjct: 69 VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD--- 125
Query: 151 CSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPACTELEV 210
G G +E+ L+A L AK + P +IA
Sbjct: 126 ----TGCGTTTSGGTESLLLACLSAKMYALHHRGITEP---------EIIAPVTAH---- 168
Query: 211 VMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCS-DLLQVVATLGTTNCCAFDCLE 269
D + + + ++ + + + +V + D +E
Sbjct: 169 AGFDKAAYYFGMKLRHVELD--PTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIE 226
Query: 270 EIGQVCRQKDVWLHVDAAYAGSAFICP--------ENRYLMKGVELADSFNFNPHKWMLV 321
+G++ ++ + LHVD+ FI L V S + + HK+
Sbjct: 227 GLGKIAQKYKLPLHVDSCLGS--FIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFA 284
Query: 322 TFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLL 381
S + ++ ++ + V+P + + W + +
Sbjct: 285 PKGSSVIMYRNSDLRMHQYYVNPAWTGGLY------GSPTLAGSRPGAIVVGCWATMVNM 338
Query: 382 GVKYLQEYIRKQISLAKEFEQLVRSD-DRFEVIYEVLMGLVCFRLKHWQI 430
G E ++ + A +F++ ++ + +++ ++ F K I
Sbjct: 339 GENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSSKTLNI 388
Score = 51.0 bits (122), Expect = 6e-07
Identities = 11/75 (14%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 434 RRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSD-DRFEVIYEVLMGLVCFRL 492
+ W + +G E ++ + A +F++ ++ + +++ ++ F
Sbjct: 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSS 383
Query: 493 KGPN--EINEKLLKR 505
K N E++++L K+
Sbjct: 384 KTLNIHELSDRLSKK 398
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 122 bits (307), Expect = 6e-30
Identities = 58/419 (13%), Positives = 125/419 (29%), Gaps = 46/419 (10%)
Query: 22 FKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIM 81
+ A D ++L ++R + ++P R P E++++I +
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQ-----IKPYRDRFPSHARLPRAGLPRAEILAEIAAMGA 90
Query: 82 PGVTHWHSPKFHAYFPTANSYP-AIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 140
W + + A + ++ + P+ + E ++
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 141 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLI 200
ML +GG G + +E+ L+A+ + A + + +
Sbjct: 151 MLGGDA-----AGGTVCGTVTSGGTESLLLAMKTYR-----DWARATKGITAPEAVVPVS 200
Query: 201 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCS-DLLQVVATLGT 259
A A D + + + RE + + + V +
Sbjct: 201 AHAA--------FDKAAQYFGIKLVRTPLDAD---YRADVAAMREAITPNTVVVAGSAPG 249
Query: 260 TNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMK-------GVELADSFN 312
D + EI + + + HVDA G FI P L +E S +
Sbjct: 250 YPHGVVDPIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVS 307
Query: 313 FNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRR-FRS 371
+ HK+ S + + P + + + + Y R S
Sbjct: 308 ADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPG-------GLYFSPTFAGSRPGALS 360
Query: 372 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQI 430
W + LG + + R+ + A + VR+ +++ + L ++ I
Sbjct: 361 ATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNI 418
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 106 bits (267), Expect = 4e-25
Identities = 67/406 (16%), Positives = 147/406 (36%), Gaps = 55/406 (13%)
Query: 63 PDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWI 122
+ + +E++ ++++ + + I I+ +
Sbjct: 6 QEKGVSEKEILEELKKYRS-LDLKYEDGNIFGSMCSNV--LPITRKIVDIFLETNLGDPG 62
Query: 123 ASPACTELEVVMLDWLGKMLDLPKEFLA-CSGGKGGGVIQGTASEATLVALLGAKAKTMQ 181
LE + LG +L+ + SGG +EA L+AL K +
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG----------TEANLMALRCIKNIWRE 112
Query: 182 RVKEAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRK 241
+ ++ + II + A + + +M+DL + K I K
Sbjct: 113 KRRKGLSKNEHPKIIVPITAHFS--------FEKGREMMDLEYIYAPI---KEDYTIDEK 161
Query: 242 SDREMCSD--LLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICP--E 297
++ D + ++ GTT D +EE+ ++ ++ ++++HVDAA+ G + P +
Sbjct: 162 FVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGG--LVIPFLD 219
Query: 298 NRYLMKGVEL-------ADSFNFNPHKWMLVTFDCSAMWLKDPSWVVN-AFNVDPLYLKH 349
++Y KGV DS +PHK + KD + + L
Sbjct: 220 DKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR 279
Query: 350 DQ--QGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSD 407
G+ F + VLR LG + ++ + + + + ++ +
Sbjct: 280 QATILGTRV-----------GFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN 328
Query: 408 DRFEVIYEVLMGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLGVKYL 453
+ F+ + E ++ +V + ++ + ++ R + +V VK L
Sbjct: 329 N-FKPVIEPILNIVAIEDEDYKE-VCKKLRD-RGIYVSVCNCVKAL 371
Score = 44.7 bits (106), Expect = 6e-05
Identities = 12/67 (17%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 439 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGPNEI 498
+ VLR LG + ++ + + + + ++ ++ F+ + E ++ +V + E+
Sbjct: 293 ACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEV 351
Query: 499 NEKLLKR 505
+KL R
Sbjct: 352 CKKLRDR 358
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 100 bits (249), Expect = 1e-22
Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 47/287 (16%)
Query: 124 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 183
+ + + + L T +L K V
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLN-----VHAIATPISTGMSISLCLSAARKKYGSNVV 179
Query: 184 ---KEAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQR 240
+H + + + +V G + +P E + I++
Sbjct: 180 IYPYASHKSPIKAVSFVGM-------NMRLVETVLDGDRVYVPVEDIEN-------AIKK 225
Query: 241 KSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAG-SAFICPENR 299
+ + + V++TL D + EI ++C D+ ++ AYA + + + +
Sbjct: 226 EIELG---NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK 282
Query: 300 YLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYR 359
K D+ + K +L ++ D ++ + G A
Sbjct: 283 KAFK--YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI--------KEISLSYPGRAS--- 329
Query: 360 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRS 406
+ L +G K E ++ Q + K ++L+
Sbjct: 330 --------ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 368
Score = 40.8 bits (95), Expect = 0.001
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 13/99 (13%)
Query: 419 GLVCFR----LKHWQIPL-GRRFRS--LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLV 471
GLV +K + GR + + L +G K E ++ Q + K ++L+
Sbjct: 307 GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 366
Query: 472 RS-----DDRFEVIYEVLMGLVCFRLKGPNEINEKLLKR 505
+F + + + P EI KL
Sbjct: 367 NDLSKKTGGKFLDVESPIASCISVNSD-PVEIAAKLYNL 404
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 96.3 bits (239), Expect = 3e-21
Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 123 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR 182
P TEL+ ++ + + + P E + G G +SEA ++A L K K +
Sbjct: 89 EYPVTTELQNRCVNMIAHLFNAPLE---EAETAVGVGTVG-SSEAIMLAGLAFKRKWQNK 144
Query: 183 VKEAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKS 242
K +I+ + + ++ + + S +G V+ +
Sbjct: 145 RKAEGKPVDKPNIVTGANVQVC--------WEKFARYFEVELKEVKLS--EGYYVMDPQQ 194
Query: 243 DREMCSD-LLQVVATLGTTNCCAFDCLEEIGQVCRQK------DVWLHVDAAYAGSAFIC 295
+M + + V A LG+T F+ ++ + + +K D +HVDAA G
Sbjct: 195 AVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPF 254
Query: 296 PENRYLMK-GVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGS 354
+ L S N + HK+ LV + ++ + YL DQ
Sbjct: 255 LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTF 314
Query: 355 APDYRHWQIPLGRR-FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVI 413
+ + + + ++ L LG + + + + + +RF ++
Sbjct: 315 T-------LNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIV 367
Query: 414 YEVL-MGLVCFRLK 426
+ + LV F LK
Sbjct: 368 SKDEGVPLVAFSLK 381
Score = 40.4 bits (94), Expect = 0.001
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 12/131 (9%)
Query: 439 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL-MGLVCFRLKGPN- 496
+ ++ L LG + + + + + +RF ++ + + LV F LK +
Sbjct: 326 IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC 385
Query: 497 ----EINEKLLKRING-NGKIHLVPSKIRDVYFLRMAVCSRYSESSDMIYSW-NEIKTLT 550
EI++ L + G + +P + + LR+ + R S + +I+ +
Sbjct: 386 HTEFEISDMLRRY--GWIVPAYTMPPNAQHITVLRVVI--REDFSRTLAERLVIDIEKVM 441
Query: 551 EELLKEEKEKA 561
EL +
Sbjct: 442 RELDELPSRVI 452
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 76.9 bits (189), Expect = 4e-15
Identities = 52/332 (15%), Positives = 105/332 (31%), Gaps = 59/332 (17%)
Query: 125 PACTELEVVMLDWLGKMLDLPKE--FLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR 182
P +++ ++ + + P A G SEA ++ + K + +R
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGS------SEACMLGGMAMKWRWRKR 130
Query: 183 VKEAHPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKS 242
++ A NL+ P + + D+ + G+ + K
Sbjct: 131 MEAAGKPTD----KPNLVCGPV-----QICWHKFARYWDVELREIPMRPGQL--FMDPKR 179
Query: 243 DREMCSD-LLQVVATLGTTNCCAFDCLEEIGQVCRQK------DVWLHVDAAYAGSAFIC 295
E C + + VV T G T ++ + + + D+ +H+DAA G F+
Sbjct: 180 MIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGG--FLA 237
Query: 296 PENRYLMK---GVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQ- 351
P + + S + + HK+ L C + +D + + YL
Sbjct: 238 PFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIG 297
Query: 352 ----QGSAPDYRHWQIPLGRRFRS----LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQL 403
S R + ++ LG + + +A
Sbjct: 298 TFAINFS---------------RPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADE 342
Query: 404 VRSDDRFEVI----YEVLMGLVCFRLKHWQIP 431
+ +E I + + VCF+LK + P
Sbjct: 343 IAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP 374
Score = 31.1 bits (70), Expect = 0.93
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 441 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVI----YEVLMGLVCFRLKGPN 496
++ LG + + +A + +E I + + VCF+LK
Sbjct: 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372
Query: 497 -------EINEKLLKR 505
+++E+L R
Sbjct: 373 DPGYTLYDLSERLRLR 388
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 57.0 bits (137), Expect = 1e-08
Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 252 QVVATLGTTNCCA---FDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELA 308
++ TT+C A D LEE+ +C D+ V+ AY + C V
Sbjct: 216 CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRI 275
Query: 309 DSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRR 368
D+F + K +V + + + S++ + P + ++P
Sbjct: 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP-----GRASASP------------ 318
Query: 369 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVR 405
SL + L LG ++ ++++ + ++
Sbjct: 319 --SLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK 353
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 56.6 bits (136), Expect = 1e-08
Identities = 26/157 (16%), Positives = 56/157 (35%), Gaps = 22/157 (14%)
Query: 252 QVVATLGTTNCCA---FDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELA 308
++ TT C A D LEE+ +C D+ V+ AY + C V
Sbjct: 198 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRI 257
Query: 309 DSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRR 368
D+F + K +V + + + ++ + + P + ++P
Sbjct: 258 DAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG-----RASASP------------ 300
Query: 369 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVR 405
SL + L LG ++ ++++ + ++
Sbjct: 301 --SLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK 335
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 1e-06
Identities = 89/522 (17%), Positives = 146/522 (27%), Gaps = 183/522 (35%)
Query: 97 PTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLA-----C 151
PT S+ A L + F I P TE D +L +FL
Sbjct: 23 PT-ASFFI--ASQLQEQ-----FNKIL-PEPTE-GFAADDEPTTPAELVGKFLGYVSSLV 72
Query: 152 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPACTELEVV 211
K G + L L + H + A L+ T
Sbjct: 73 EPSKVG------QFDQVLNLCLTEFENCYLEGNDIH------ALAAKLLQENDTT----- 115
Query: 212 MLDWLGKMLDLPKEFL-ACSGGKGGGVIQRKSDREMCSDLLQVVATLGTTNCCA-F---- 265
L K +L K ++ A + +R D++ S L + V G A F
Sbjct: 116 ----LVKTKELIKNYITARI------MAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQG 164
Query: 266 ---DCLEEIGQVCRQKDVWLHVDAAYAG--SAFICPENRYLMKGVELADSFN-FNPHKWM 319
D EE+ +D++ Y I L + +
Sbjct: 165 NTDDYFEEL------RDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--- 211
Query: 320 LVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVL- 378
+ WL++PS D YL S P S L V+
Sbjct: 212 --GLNILE-WLENPSNT-----PDKDYLL-----SIP-------------ISCPLIGVIQ 245
Query: 379 --------RLLGVKY--LQEYIR------------KQISLAKEFEQLVRSDDRFEVIYEV 416
+LLG L+ Y++ I+ +E S + V
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA---ITV 302
Query: 417 L--MGLVCFRLKHWQIPLGRRFRSLKLW------------------FVLRLLGVKYLQEY 456
L +G+ C + + L + L + +Q+Y
Sbjct: 303 LFFIGVRC------Y----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 457 IRK---------QISLAKEFEQLVRSDDRFEVI---YEVLMGLVC-FR-LKGPNEINEKL 502
+ K Q+ ++ LV V+ + L GL R K P+ +++
Sbjct: 353 VNKTNSHLPAGKQVEIS-----LVNGAKNL-VVSGPPQSLYGLNLTLRKAKAPSGLDQS- 405
Query: 503 LKRINGNGKIHLVPSKIRDVY-FLRMAV---CSRYSESSDMI 540
+I K++ FL +A +SD+I
Sbjct: 406 --------RIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Score = 46.2 bits (109), Expect = 3e-05
Identities = 52/350 (14%), Positives = 96/350 (27%), Gaps = 130/350 (37%)
Query: 16 MGDVNEFKDF------AKAMVDYVGNYLEN---------IRDRRVLPTVEPG-----YLR 55
MG D A+ + + N+ ++ + + V T+ G +R
Sbjct: 1631 MG-----MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 56 ----PLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILS 111
+I ET D +++ +I T + S K T + PA+
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYT-FRSEK-GLLSATQFTQPALTL---- 1738
Query: 112 DSIACIGFTWIASPACTELEVVMLDW-------------LGKMLDLPKEF--LACSGGKG 156
A E + LG E+ LA
Sbjct: 1739 -----------MEKAAFE---DLKSKGLIPADATFAGHSLG-------EYAALASL---- 1773
Query: 157 GGVIQGTASEATLVALLGAKAKTMQR-VKEAHPDWKDSDIIANLIASPACT-ELEVVMLD 214
V+ S +LV ++ + TMQ V + +IA A + E +
Sbjct: 1774 ADVM----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--- 1826
Query: 215 WLGKMLDLPKEFLACSGGKGGGVIQRKSDREM----CSDLLQVVATLGTTNCCAFDCLEE 270
+ + G + G ++ E+ + Q VA G A D +
Sbjct: 1827 ---------QYVVERVGKRTGWLV------EIVNYNVEN-QQYVAA-GDLR--ALDTVTN 1867
Query: 271 IGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWML 320
+ + + + +EL S + + L
Sbjct: 1868 VLNFIKLQKI----------------------DIIELQKSLSLEEVEGHL 1895
Score = 43.9 bits (103), Expect = 2e-04
Identities = 43/241 (17%), Positives = 82/241 (34%), Gaps = 58/241 (24%)
Query: 337 VNAFNVDPLYLKHDQQGSAPDYRH-WQIPLGRRFRSLKLWF---VLRLLGVKYLQEYIRK 392
++A++ PL L H GS H +P +F L+ +++ +
Sbjct: 1 MDAYSTRPLTLSH---GSL---EHVLLVPTA-------SFFIASQLQ-------EQFNKI 40
Query: 393 QISLAKEFEQLVRSDDRFEVIYEVL---MGLVCFRLKHWQIPLGRRFRSLKLWFVLRLLG 449
+ F DD E++ +G V ++ +G+ + L L L
Sbjct: 41 LPEPTEGFAA----DDEPTTPAELVGKFLGYVSSLVE--PSKVGQFDQVLNL--CLTEFE 92
Query: 450 VKYLQEYIRKQI-SLAKEFEQLVRSD--DRFEVIYEVLMGLVCFRLKGPNEINEKLLKRI 506
YL+ I +LA + Q + E+I + + + + N L + +
Sbjct: 93 NCYLEG---NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 507 N-GNGKIHLV-----PSKIRDVYF--LRMAVCSRYSESSDMIYSWNEIKTLTEELLKEEK 558
GN ++ + + D YF LR Y ++ IK E L + +
Sbjct: 150 GEGNAQLVAIFGGQGNT---DDYFEELR----DLYQTYHVLVGDL--IKFSAETLSELIR 200
Query: 559 E 559
Sbjct: 201 T 201
Score = 41.6 bits (97), Expect = 8e-04
Identities = 37/227 (16%), Positives = 59/227 (25%), Gaps = 80/227 (35%)
Query: 2 QDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVL--PTVEPGYLRPLIP 59
Q+Q+ + N K + + L N V+ P P L L
Sbjct: 346 QEQVQDYVN-------KTNSHLPAGKQV--EIS--LVNGAKNLVVSGP---PQSLYGLNL 391
Query: 60 E----TAPDTPDTWQEVMSDIERVIMPG-----VTHWHSPKFH-AYFPTANSYPAIVADI 109
AP D + S ER + V SP FH A+ I D+
Sbjct: 392 TLRKAKAPSGLDQSRIPFS--ERKLKFSNRFLPVA---SP-FHSHLLVPAS--DLINKDL 443
Query: 110 LSDSIACIG----------FTW---------IASPACTELEVVMLDW------------- 137
+ ++++ F I+ + + + W
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 138 --------LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAK 176
LG + K+ G G VI + G K
Sbjct: 504 FGPGGASGLGVLTHRNKD------GTGVRVIVAGTLDINPDDDYGFK 544
Score = 41.6 bits (97), Expect = 8e-04
Identities = 68/464 (14%), Positives = 116/464 (25%), Gaps = 212/464 (45%)
Query: 20 NEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPL-------IPETAPDTPDTWQEV 72
+ ++ + L + R E + + L P PD
Sbjct: 178 QTYHVLVGDLIKFSAETLSELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKD------ 229
Query: 73 MSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAI-VADILSDSIAC--IGFTWIASPACT 128
Y + S P I V + + +GFT
Sbjct: 230 ----------------------YLLSIPISCPLIGVIQLAHYVVTAKLLGFT-------- 259
Query: 129 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA--SEATLVALLGAKAKTMQRVKEA 186
P E + ++G S+ + A+ A+ +
Sbjct: 260 ----------------PGELRSY--------LKGATGHSQGLVTAVAIAETDS------- 288
Query: 187 HPDWKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREM 246
W+ + + +L ++G + C + + +
Sbjct: 289 ---WESFFVSVRKA---------ITVLFFIG---------VRCY--------EAYPNTSL 319
Query: 247 CSDLLQVVATLGTTNCCAFDCLE-EIGQ-----VCR---QKDVWLHVDAAYAGSAFICPE 297
+L+ D LE G Q+ V +V+
Sbjct: 320 PPSILE-------------DSLENNEGVPSPMLSISNLTQEQVQDYVNKT---------- 356
Query: 298 NRYLMKG--VELADSFNFNPHKWMLVT--------FDCSAMWLKDPSWVVNAFNVDPLYL 347
N +L G VE++ N K ++V+ + + K PS
Sbjct: 357 NSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS------------- 400
Query: 348 KHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGV------KYLQEYIRKQISLAKEFE 401
DQ +IP R KL F R L V L A +
Sbjct: 401 GLDQ---------SRIPFSER----KLKFSNRFLPVASPFHSHLLVP--------ASD-- 437
Query: 402 QLVRSDDRFEVIYEVLMGLVCFRLKHWQIPL-----GRRFRSLK 440
L+ D ++ V F K QIP+ G R L
Sbjct: 438 -LINKD--------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 1e-04
Identities = 34/225 (15%), Positives = 71/225 (31%), Gaps = 58/225 (25%)
Query: 381 LGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHWQIPLGRRFRSLK 440
K +Q+ + +S +E + ++ S D + K ++ + +
Sbjct: 33 FDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEM-VQK------ 81
Query: 441 LWFVLRLLGVKY--LQEYIRKQ-ISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGPNE 497
FV +L + Y L I+ + + + DR +V RL+ +
Sbjct: 82 --FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 498 INEKLLK-RIN---------GNGKIHLVPSKIRD----------VYFLRMAVC------- 530
+ + LL+ R G+GK + +++L + C
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 531 ---------------SRYSESSDMIYSWNEIKTLTEELLKEEKEK 560
SR SS++ + I+ LLK + +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Score = 40.2 bits (93), Expect = 0.002
Identities = 79/574 (13%), Positives = 161/574 (28%), Gaps = 181/574 (31%)
Query: 24 DFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMS--DIERVIM 81
DF Y Y + +L E ++ D D + ++S +I+ +IM
Sbjct: 8 DFETGEHQY--QY------KDILSVFEDAFVDNF---DCKDVQDMPKSILSKEEIDHIIM 56
Query: 82 PGVTHWHSPKFHAY--FPTANSYPA-IVADILSDSIACIGFTWIASPACTELEVVMLDWL 138
F T S +V + + + I + ++ SP TE
Sbjct: 57 SK-----DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-INYKFLMSPIKTEQR------- 103
Query: 139 GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN 198
T +++ + D+ + A
Sbjct: 104 -----------------------------------QPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 199 L-IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKS--DREMCSDLLQVVA 255
++ + + + L ++ P + + G G G K+ ++C
Sbjct: 129 YNVSRL---QPYLKLRQALLELR--PAKNVLIDGVLGSG----KTWVALDVCLSYKVQCK 179
Query: 256 --------TLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGV-- 305
L NC + + + E+ + + +D + + + + +
Sbjct: 180 MDFKIFWLNLK--NCNSPETVLEM-----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 306 ELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVD---------------------- 343
EL P++ L+ + + NAFN+
Sbjct: 233 ELRRLLKSKPYENCLLVLL--NVQ--NA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 344 PLYLKHDQQGSAPDY-----RHWQIPLGRRFRSLKLW------FVLRLLGVKYLQEYIRK 392
+ L H PD + L R + L L ++ E IR
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSIIA-----ESIRD 339
Query: 393 QISLAKEFEQLVRSDDRF----EVIYEVL---------MGLVCFRLKHWQIP---LGRRF 436
++ ++ + + D+ E VL L F IP L
Sbjct: 340 GLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSL-- 394
Query: 437 RSLKLWFVLRLLGV-KYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKGP 495
+WF + V + + + SL ++ E + + ++K
Sbjct: 395 ----IWFDVIKSDVMVVVNKLHKY--SLVEK--------QPKESTISIPSIYLELKVKLE 440
Query: 496 NE--INEKLLKRINGNGKI---HLVPSKIRDVYF 524
NE ++ ++ N L+P + D YF
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYF 473
Score = 39.8 bits (92), Expect = 0.003
Identities = 48/368 (13%), Positives = 104/368 (28%), Gaps = 119/368 (32%)
Query: 106 VADILSDSIAC--------IGFTWIASPACTELEVVMLDWLG-KMLDLPKEFLACSGGKG 156
V D LS + + T E++ ++L +L + DLP+E +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLKYLDCRPQDLPRE--VLTTN-- 326
Query: 157 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WK--DSDIIANLIAS------PACTE 207
++++ R A D WK + D + +I S PA E
Sbjct: 327 ----------PRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--E 370
Query: 208 L------------------EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCS- 248
++ L W + + +++++ S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISI 428
Query: 249 -DLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLH---VDA-----AYAGSAFICPENR 299
+ + ++ + + LH VD + I P
Sbjct: 429 PSIY-------------LELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 300 -----YL---MKGVELADSFNFNPH-----KWMLVTFDCSAMWLKDPSWVVNAFNVDPLY 346
++ +K +E + +++ + ++N Y
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 347 LKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIR-KQISLAKE----FE 401
+ + P Y R ++ L F+ ++ +Y +I+L E FE
Sbjct: 531 KPYICD-NDPKYE-------RLVNAI-LDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 402 QLVRSDDR 409
+ + R
Sbjct: 582 EAHKQVQR 589
Score = 28.7 bits (63), Expect = 7.5
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 64/181 (35%)
Query: 6 HKKIKNGSIIMGDV---NEFKDFA-----------KAMVDYVGNY------LENIRD--- 42
K +N +++ +V + F K + D++ L++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 43 --------RRVLPTVEPGYLRP-----------LIPETAPDTPDTWQ---EVMSD-IERV 79
+ L P L +I E+ D TW V D + +
Sbjct: 300 PDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 80 IMPGVTHWHSPKFHAY------FPTANSYPAIVADILSDSIACIGFTWIASPACTELEVV 133
I + ++ FP + P I+ ++ W +++ VV
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI----------WFDVIK-SDVMVV 407
Query: 134 M 134
+
Sbjct: 408 V 408
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 39.4 bits (93), Expect = 0.002
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYA 289
+ IG++CR + + HVDA +
Sbjct: 182 IAAIGEMCRARGIIYHVDATQS 203
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 34.4 bits (78), Expect = 0.10
Identities = 30/216 (13%), Positives = 61/216 (28%), Gaps = 46/216 (21%)
Query: 124 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 183
S +L+ + +P QG +E L +L + +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIP-------------AHQGRGAENILFPVLLKYKQKEGKA 121
Query: 184 KE------AHPDWKDSDII---ANLIASPACTELEVVMLDWLGKMLDLPK--EFLACSGG 232
K H D + + I + D D+ K E +A G
Sbjct: 122 KNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA 181
Query: 233 KGGGVIQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAA-YAGS 291
I + V + L+E+ ++ +Q +++ +D+A + +
Sbjct: 182 DNIVAI-----------VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN 230
Query: 292 AFICPENRYLMKGV----------ELADSFNFNPHK 317
A+ K + AD+ + K
Sbjct: 231 AYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK 266
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 34.0 bits (79), Expect = 0.11
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYA 289
+EEI +V K LH+DA +
Sbjct: 157 VEEISEVLAGKAA-LHIDATAS 177
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 33.6 bits (78), Expect = 0.15
Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 268 LEEIGQVCRQK--DVWLHVDAAYA 289
+E++ ++ ++K + +HVDA
Sbjct: 158 VEDVTRIVKKKNKETLVHVDAVQT 181
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 31.1 bits (71), Expect = 0.82
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 45 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSD 75
++ V GY P + + + P + +++D
Sbjct: 246 IIFMVGRGYASPDLSKLYKNCPKAMKRLVAD 276
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 31.1 bits (71), Expect = 1.1
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 257 LGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAF 293
LGT + L + K + L D Y+G+AF
Sbjct: 204 LGT--TMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 238
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 31.0 bits (71), Expect = 1.1
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 268 LEEIGQVCRQKD----------VWLHVDAAYA 289
+ EI + + + V +H DAA A
Sbjct: 194 ISEISRRIKALNQIRAASGLPRVLVHTDAAQA 225
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 30.7 bits (70), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAFICPENRY-LMKGVELADSFNF 313
LE+I C++ ++L +D A SA P N L L D F
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold,
epoxide degradation, epichlorohydrin; 2.10A
{Agrobacterium tumefaciens} SCOP: c.69.1.11
Length = 294
Score = 30.7 bits (70), Expect = 1.2
Identities = 2/27 (7%), Positives = 7/27 (25%)
Query: 61 TAPDTPDTWQEVMSDIERVIMPGVTHW 87
+ + S+ + H+
Sbjct: 250 PYAPLIEFVPKYYSNYTMETIEDCGHF 276
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.3
Identities = 4/22 (18%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 42 DRRVLPTVEPGYLRPLIPETAP 63
+++ L ++ L+ ++AP
Sbjct: 18 EKQALKKLQ-ASLKLYADDSAP 38
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 257 LGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPE 297
LGT D L+ + Q ++ L D YA + F P+
Sbjct: 201 LGT--TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase;
1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A
3pi6_A
Length = 301
Score = 29.9 bits (68), Expect = 2.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 63 PDTPDTWQEVMSDIERVIMPGVTHW 87
+ + D+E ++PG HW
Sbjct: 250 TFQLEQMKAYAEDVEGHVLPGCGHW 274
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 29.8 bits (66), Expect = 2.5
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 251 LQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKG 304
L + CC + +G VCR+ + +G++ C N + M G
Sbjct: 247 LTQDSQCSDGLCCKKCKFQPMGTVCREAVNDCDIRETCSGNSSQCAPNIHKMDG 300
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 29.7 bits (66), Expect = 2.8
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 158 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASP 203
+I GT+ + G VK +P W + I + L+ +
Sbjct: 409 NIISGTSMSCPHIT--GIAT----YVKTYNPTWSPAAIKSALMTTA 448
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 29.5 bits (67), Expect = 2.8
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAGSAFICPENRY-LMKGVELADSFNF 313
+E IG VC+ + LH+D + +A + M D+ +F
Sbjct: 162 IEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 208
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis,
S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A
{Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB:
2pae_A* 2pak_A* 2pam_A*
Length = 141
Score = 28.3 bits (63), Expect = 3.5
Identities = 9/70 (12%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 495 PNEINEKLLKRINGNGKIHLVPSKI-RDVYFLR-----MAVCSRYSESSDMIYSWNEIKT 548
++ N ++ V + +++ M + S Y + +D I ++ K
Sbjct: 71 LDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYDETDYIRQYDNFKK 130
Query: 549 LTEELLKEEK 558
++ E++
Sbjct: 131 YIAKINLEKE 140
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,,
oxidoreductase; HET: NAG MAN A2G HEM; 1.70A
{Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB:
1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A*
Length = 343
Score = 29.1 bits (65), Expect = 3.7
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
DF + +G + D V+P +P P + SDIE
Sbjct: 262 VDDFQFIFLALTQLGQDPNAMTDCSDVIPLSKP----IPGNGPFSFFPPG--KSHSDIE 314
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases,
protoporphyrin IX, electron T lignin peroxidase, lignin
degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB:
3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A*
2vka_A*
Length = 331
Score = 29.1 bits (65), Expect = 3.9
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
FA M +G + D V+PT P A P +SD+E
Sbjct: 255 QNRFAATMSKMALLGQDKTKLIDCSDVIPT-------PPALVGAAHLPAG--FSLSDVE 304
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 28.8 bits (65), Expect = 4.1
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 45 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSD 75
++ V G L P + + + P + +M++
Sbjct: 234 IIEMVGRGSLSPDLSKVRSNCPKRMKRLMAE 264
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.9 bits (65), Expect = 4.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 256 TLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYA 289
G D +++I +VC + DV L V+ AYA
Sbjct: 159 NYGNLP----D-VKKIAKVCSEYDVPLLVNGAYA 187
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 4.9
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 36/126 (28%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL--------RPLIPETAPDTPD-- 67
++ E + KA+ E + +V+ R I P+
Sbjct: 747 ELVETSEVRKAVSI------ETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKPYK 800
Query: 68 -------TWQEVMSDIERVI----MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIAC 116
E + D+ERVI V W S + + S C
Sbjct: 801 QVKQIAPAELEGLLDLERVIVVTGFAEVGPWGSARTR--------WEMEAFGEFSLE-GC 851
Query: 117 IGFTWI 122
+ WI
Sbjct: 852 VEMAWI 857
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP,
perox oxidoreductase; HET: NAG MAN HEM; 1.30A
{'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A*
1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A*
1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A*
1ly9_A* 1h3j_A* 1ly8_A*
Length = 344
Score = 28.7 bits (64), Expect = 5.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPET 61
+ + AM +G + D V+P+ P+IP
Sbjct: 270 GQRYRAAMAKMSVLGFDRNALTDCSDVIPSAVSNNAAPVIPGG 312
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 28.7 bits (64), Expect = 5.1
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+F M +G + D V+PT + + P M+D++
Sbjct: 261 VNNFEAVMSRLAVIGQIPSELVDCSDVIPTPPLAKVAQ--VGSLPPGK-----SMADVQ 312
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 28.6 bits (64), Expect = 5.5
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 13/38 (34%)
Query: 61 TAPDTPDTWQEVMS----------DIERVIMPGVTHWH 88
TA T + D++ ++ +TH H
Sbjct: 38 TALGTRAARGALELHLAELGLCFQDVKTIL---LTHHH 72
>1ylf_A RRF2 family protein; structural genomics, transcription regulator,
P protein structure initiative; 2.50A {Bacillus cereus
atcc 14579} SCOP: a.4.5.55
Length = 149
Score = 27.5 bits (61), Expect = 6.8
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 215 WLGKMLDLPKE--FLACSGGKGGGVIQRKSDREMCSDLLQVVATLGTTNCCAF------D 266
+ K++ K+ F+ + G GG + + D+ V + D
Sbjct: 46 VIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPD 105
Query: 267 CLEEIGQVCRQKDVWLHVDAAY 288
C + + + +A
Sbjct: 106 CPIGANIQAVLEIILIQAQSAM 127
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 28.4 bits (64), Expect = 7.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 268 LEEIGQVCRQKDVWLHVDAA 287
LE+I + C ++ + LH+D A
Sbjct: 160 LEKISEYCHEQGISLHLDGA 179
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 28.3 bits (64), Expect = 7.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 268 LEEIGQVCRQKDVWLHVDAAYAG 290
LEE+ ++ + ++ D Y
Sbjct: 176 LEELVEIASEVGAYILSDEVYRS 198
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 28.1 bits (63), Expect = 8.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 265 FDCLEEIGQVCRQKDVWLHVDAA 287
F LE I + CR++ + LH+D A
Sbjct: 155 FSELETISRYCRERGIRLHLDGA 177
>2i06_A DNA replication terminus site-binding protein; protein-DNA complex,
replication-DNA complex; HET: DNA; 2.20A {Escherichia
coli} SCOP: e.2.1.1 PDB: 2ewj_A* 1ecr_A* 2i05_A* 1sut_A
Length = 309
Score = 27.7 bits (61), Expect = 9.5
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 336 VVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLK--------LWFVLRLLGVKYLQ 387
+N V Q + +RH I RS K L + + L L
Sbjct: 52 PLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALV 111
Query: 388 EYIRKQISLAK-EFEQLVR------SDDRFEVIYEVLMGLV 421
+I + I+ K FE +V + RFE ++ L GL+
Sbjct: 112 SHI-QHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLI 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.436
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,201,777
Number of extensions: 581889
Number of successful extensions: 1520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1468
Number of HSP's successfully gapped: 81
Length of query: 561
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 463
Effective length of database: 3,965,535
Effective search space: 1836042705
Effective search space used: 1836042705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.7 bits)