RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9807
(561 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 345 bits (885), Expect = e-114
Identities = 233/420 (55%), Positives = 300/420 (71%), Gaps = 14/420 (3%)
Query: 18 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ ++F+ K MVDY+ +YLE I R+V P V+PGYLRPLIP TAP PDT+++++ D+E
Sbjct: 2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 78 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 137
++IMPGVTHWHSP F AYFPTA+SYPA++AD+L +I CIGF+W ASPACTELE VM+DW
Sbjct: 62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 138 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 197
LGKML LP+ FLA G+GGGVIQG+ASEATLVALL A+ K ++R++ A P ++
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 198 NLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSDLLQ----- 252
L+A ++ ++ G + + + + G ++ + +E
Sbjct: 182 KLVA--YASDQAHSSVERAGLIGGVKLKAIPSD---GKFAMRASALQEALERDKAAGLIP 236
Query: 253 --VVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADS 310
VVATLGTT+CC+FD L E+G +C ++D+WLHVDAAYAGSAFICPE R+L+ GVE ADS
Sbjct: 237 FFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADS 296
Query: 311 FNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSA--PDYRHWQIPLGRR 368
FNFNPHKW+LV FDCSAMW+K + + AF +DP+YLKH QGS DYRHWQ+PLGRR
Sbjct: 297 FNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRR 356
Query: 369 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKHW 428
FRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D RFEV EV +GLVCFRLK
Sbjct: 357 FRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGS 416
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 147 bits (372), Expect = 2e-39
Identities = 58/417 (13%), Positives = 130/417 (31%), Gaps = 44/417 (10%)
Query: 27 KAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTH 86
K + D L++ + + T+ P +Q + ++ + G
Sbjct: 2 KQVTDLRSELLDSRFGAKSISTIAE---SKRFPLHEMRDDVAFQIINDEL---YLDGNAR 55
Query: 87 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 146
+ F + V ++ SI P +++ ++ + + P
Sbjct: 56 QNLATFCQTW-----DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110
Query: 147 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPACT 206
G+ G +SEA ++ + K + +R++ A +++ +
Sbjct: 111 PK----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQIC--- 163
Query: 207 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMC-SDLLQVVATLGTTNCCAF 265
+ D+ + G + K E C + + VV T G T +
Sbjct: 164 ------WHKFARYWDVELREIPMR--PGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNY 215
Query: 266 DCLE------EIGQVCRQKDVWLHVDAAYAGSAF-ICPENRYLMKGVELADSFNFNPHKW 318
+ + + Q D+ +H+DAA G + + S + + HK+
Sbjct: 216 EFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKF 275
Query: 319 MLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVL 378
L C + +D + + YL A ++ + + ++
Sbjct: 276 GLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRP------AGQVIAQYYEF 329
Query: 379 RLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY----EVLMGLVCFRLKHWQIP 431
LG + + +A + +E I + + VCF+LK + P
Sbjct: 330 LRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDP 386
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 100 bits (249), Expect = 3e-23
Identities = 46/420 (10%), Positives = 106/420 (25%), Gaps = 73/420 (17%)
Query: 20 NEFKDFAKAMVDYVGNYLENIRDRRVLPT--VEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ + +++ +E++ + R +P ++ ++ + + D + + E
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 78 ---RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM 134
R S H + N + D + L +
Sbjct: 72 REARTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYA--------LTNKI 118
Query: 135 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR-----VKEAHPD 189
L+ K L G + ++ ++ L A K +H
Sbjct: 119 LESFFKQL----------GLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKS 168
Query: 190 WKDSDIIANLIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQRKSDREMCSD 249
+ + E + + D+
Sbjct: 169 PIKAVSFVG--MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGN--------------- 211
Query: 250 LLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELAD 309
V++TL D + EI ++C D+ ++ AYA E D
Sbjct: 212 RPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLK-KAFKYRVD 270
Query: 310 SFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRF 369
+ + K +L ++ D ++ P
Sbjct: 271 AVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR-------------------ASAT 311
Query: 370 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVR---SDDRFEVIYEVLMGLVCFRLK 426
+ L +G K E ++ Q + K ++L+ + + C +
Sbjct: 312 PVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN 371
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 75.8 bits (185), Expect = 3e-15
Identities = 41/349 (11%), Positives = 98/349 (28%), Gaps = 36/349 (10%)
Query: 54 LRPLIPE-TAPDTPDTWQEVMSDIERVIMPGVTHW--------HSPKFHAYFPTANSYPA 104
+R L+ + P+ + + + + ++ + + Y
Sbjct: 10 IRLLLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRF 69
Query: 105 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA 164
I S I+ + S ++ ++ + K+ + + A
Sbjct: 70 IHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSV--------ASCFVVPMA 121
Query: 165 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLIASPACTELEVVMLDWLG-KMLDLP 223
+ +L + K II I +C + + G + + +
Sbjct: 122 TGMSLTLCFLTLRHKRPKAKY---------IIWPRIDQKSCFK----SMVTAGFEPVVIE 168
Query: 224 KEFLACSGGKGGGVIQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLH 283
++ K +L + +T D LEE+ +C D+
Sbjct: 169 NVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHV 228
Query: 284 VDAAYAGSAFICPENRYLMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVD 343
V+ AY + C V D+F + K +V + + + ++ +
Sbjct: 229 VNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS--- 285
Query: 344 PLYLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRK 392
+ + ++P L + R YL ++K
Sbjct: 286 --KMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK 332
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 36.1 bits (82), Expect = 0.010
Identities = 18/177 (10%), Positives = 49/177 (27%), Gaps = 23/177 (12%)
Query: 237 VIQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAA-YAGSAFI- 294
I+ + + + + + L+ + + ++ D+ + +D+A +A +A+
Sbjct: 175 GIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFI 234
Query: 295 -CPENRYLMKGVE--------LADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPL 345
E Y +E AD + K +V D
Sbjct: 235 KQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDS------------ 282
Query: 346 YLKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQ 402
+ + P + + L +++ +I+ +
Sbjct: 283 FFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVD 339
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 35.5 bits (81), Expect = 0.014
Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 22/179 (12%)
Query: 238 IQRKSDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAA-YAGSAFICP 296
I+ K + L V L + + + ++ + + DA +A+
Sbjct: 167 IKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIK 226
Query: 297 ENRYLMKGV----------ELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLY 346
E + V AD + K + + + D A + +Y
Sbjct: 227 EQEAGYENVSIKDIVHEMFSYADGCTMSGKK-DCLVNIGGFLCMNDEEMFSAAKELVVVY 285
Query: 347 LKHDQQGSAPDYRHWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVR 405
G + +G R + +Y++ +++ L + +
Sbjct: 286 EGMPSYGGLAGRDMEAMAIGLR----------EAMQYEYIEHRVKQVRYLGDKLREAGV 334
>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1
{Pseudoalteromonas sp. AS-11 [TaxId: 247492]}
Length = 435
Score = 35.0 bits (79), Expect = 0.022
Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 11/207 (5%)
Query: 1 MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPE 60
+ I + G + D+ + N L + L
Sbjct: 201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAEC 260
Query: 61 TAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFT 120
T T + + + I V G P+ ++ + + + ++ +
Sbjct: 261 TVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP 320
Query: 121 WIAS--PACTELEVVMLDWLGKMLDL---PKEFLACSGGKGGGVIQGTASEATLVALLGA 175
++ T V + G L ++ G + GT+ V+ G
Sbjct: 321 FLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVS--GV 378
Query: 176 KAKTMQRVKEAHPDWKDSDIIANLIAS 202
V HP+ S + A L A+
Sbjct: 379 AT----LVWSYHPECSASQVRAALNAT 401
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 33.4 bits (75), Expect = 0.084
Identities = 27/283 (9%), Positives = 74/283 (26%), Gaps = 18/283 (6%)
Query: 124 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 183
S +L+ + + G A + +
Sbjct: 74 SRNYYDLKDKAKELFNY-----DYIIPAHQG----------RGAENILFPVLLKYKQKEG 118
Query: 184 KEAHPDWKDSDIIANLIASPACTELEVV--MLDWLGKMLDLPKEFLACSGGKGGGVIQRK 241
K +P + + A + + + + K I +
Sbjct: 119 KAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQH 178
Query: 242 SDREMCSDLLQVVATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAY-AGSAFICPENRY 300
+ + + V + L+E+ ++ +Q +++ +D+A +A+
Sbjct: 179 GADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 238
Query: 301 LMKGVELADSFNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRH 360
K + + +T L + +V + + ++ Q+ +
Sbjct: 239 KYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFV 298
Query: 361 WQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQL 403
L R + + + +YL I + L +
Sbjct: 299 TYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA 341
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 30.2 bits (67), Expect = 0.61
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 8/126 (6%)
Query: 259 TTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELAD--------S 310
T LEEI + D+ + D Y + + + + + S
Sbjct: 172 TGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFS 231
Query: 311 FNFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPLYLKHDQQGSAPDYRHWQIPLGRRFR 370
F W L + ++ P+ A + +
Sbjct: 232 KTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRK 291
Query: 371 SLKLWF 376
Sbjct: 292 EYDRRR 297
>d1teja_ g.20.1.1 (A:) Schistatin {Saw-scaled viper (Echis
carinatus), different isoforms [TaxId: 40353]}
Length = 62
Score = 26.3 bits (58), Expect = 2.1
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 262 CCAFDCLEEIGQVCRQKDVWLHVDAAY-AGSAFICPENRY 300
CC G +C++ + Y G CP NRY
Sbjct: 24 CCNNCKFLNSGTICQRARG--DGNHDYCTGITTDCPRNRY 61
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase)
{Basidomycetos fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 357
Score = 28.1 bits (62), Expect = 2.8
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEPGYLRPLI 58
F AM +G+ ++ D V+P +P +P +
Sbjct: 266 AASFRAAMSKLAVLGHNRNSLIDCSDVVPVPKPATGQPAM 305
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase)
{Arthromyces ramosus [TaxId: 5451]}
Length = 336
Score = 28.1 bits (62), Expect = 3.0
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 22 FKDFAKAMVDYVGNYLENIRDR----RVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 77
+ + AM + + V+P+ P+IP + DIE
Sbjct: 262 GQRYRAAMAK-MSVLGFDRNALTDCSDVIPSAVSNNAAPVIPGGL---------TVDDIE 311
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 182
Score = 27.7 bits (60), Expect = 3.1
Identities = 30/177 (16%), Positives = 48/177 (27%), Gaps = 13/177 (7%)
Query: 254 VATLGTTNCCAFDCLEEIGQVCRQKDVWLHVDAAYAGSAFICPENRYLMKGVELADSF-- 311
+ T+G A+ L E+ V + V + A GS K V A S
Sbjct: 7 LGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEK 66
Query: 312 ------NFNPHKWMLVTFDCSAMWLKDPSWVVNAFNVDPL-YLKHDQQGSAPDYRHWQIP 364
+ T + LK S D + + S
Sbjct: 67 IAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAI 126
Query: 365 LGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLV 421
G ++ + + + I KQ+ + + F D E LM V
Sbjct: 127 CGAISVYNRMDQLPPGPSPESI---IYKQLRI-EGFIVYRWQGDVREKALRDLMKWV 179
>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 101
Score = 26.6 bits (58), Expect = 3.1
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 84 VTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLD 143
+ H SP H F + +L+ I A + V + + +
Sbjct: 11 IAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFA 70
Query: 144 L 144
Sbjct: 71 R 71
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga
maritima [TaxId: 2336]}
Length = 134
Score = 26.9 bits (59), Expect = 3.3
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 67 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADI 109
+ + I P V HWH A + I +
Sbjct: 73 KPARILKKGDVVEIPPNVVHWHG----AAPDEELVHIGISTQV 111
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot
basidiomycete (Phanerochaete chrysosporium) [TaxId:
5306]}
Length = 343
Score = 27.3 bits (60), Expect = 4.7
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 22 FKDFAKAMVD--YVGNYLENIRD-RRVLPTVEP 51
DF + +G + D V+P +P
Sbjct: 262 VDDFQFIFLALTQLGQDPNAMTDCSDVIPLSKP 294
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 26.4 bits (57), Expect = 9.6
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 1/93 (1%)
Query: 48 TVEPGYLRPLIPETAPD-TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIV 106
++ G + + A P +++ I+ + AI
Sbjct: 170 LLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIE 229
Query: 107 ADILSDSIACIGFTWIASPACTELEVVMLDWLG 139
A + A + TE ML+ G
Sbjct: 230 AGVDVVDTAISSMSLGPGHNPTESVAEMLEGTG 262
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 26.5 bits (58), Expect = 9.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 22 FKDFAKAMVDYVGNYLENIRDRRVLPTVEP 51
D K VD+V NY + V+PT P
Sbjct: 106 MADLEKETVDFVDNYDGTEKIPDVMPTKIP 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.436
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,295,304
Number of extensions: 116357
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 28
Length of query: 561
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,171,896
Effective search space: 551963016
Effective search space used: 551963016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.4 bits)