BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9809
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDP|B Chain B, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|D Chain D, Crystal Structure Of The Sodium-potassium Pump
Length = 286
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 151 VSCDGESPADREHIGPVEIYPQHGTPGY---YYPYENK---EGYLSPVLAVHFKNPKLNT 204
V C G+ D+E +G +E + G PG+ YYPY K YL P++AV F N ++T
Sbjct: 194 VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDT 253
Query: 205 LINVDCRAWAKNIIY 219
I ++C+A+ +NI Y
Sbjct: 254 EIRIECKAYGENIGY 268
>pdb|3N23|B Chain B, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|D Chain D, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|B Chain B, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|D Chain D, Crystal Structure Of The Sodium-Potassium Pump
Length = 277
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 151 VSCDGESPADREHIGPVEIYPQHGTPGY---YYPYENK---EGYLSPVLAVHFKNPKLNT 204
V C G+ D+E +G +E + G PG+ YYPY K YL P++AV F N ++T
Sbjct: 185 VHCTGKRDEDKEKVGTMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDT 244
Query: 205 LINVDCRAWAKNIIY 219
I ++C+A+ +NI Y
Sbjct: 245 EIRIECKAYGENIGY 259
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 109 IYGWEPQYYENIGELPPEMPESLKKHINDTALGDILKMQTVWVSCDGESPADREHIGPVE 168
I G+ P+ +N +LP E+ + +++ + + C + DRE IG +E
Sbjct: 184 IIGFYPKPLKNTTDLPEELQANYNQYV-------------LPLRCAAKREEDREKIGSIE 230
Query: 169 IYPQHGTPGY---YYPYENK---EGYLSPVLAVHFKNPKLNTLINVDCRAWAKNIIY 219
+ G G+ YYPY K + YL P+LA+ F N N + ++C+ + +NI Y
Sbjct: 231 YFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDY 287
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 305
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 19/117 (16%)
Query: 109 IYGWEPQYYENIGELPPEMPESLKKHINDTALGDILKMQTVWVSCDGESPADREHIGPVE 168
I G+ P+ +N +LP ++ + +++ + + C + DRE IG +E
Sbjct: 184 IIGFYPKPLKNTTDLPEQLQANYNQYV-------------LPLRCAAKREEDREKIGSIE 230
Query: 169 IYPQHGTPGY---YYPYENK---EGYLSPVLAVHFKNPKLNTLINVDCRAWAKNIIY 219
+ G G+ YYPY K + YL P+LA+ F N N + ++C+ + +NI Y
Sbjct: 231 YFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNMELRIECKVYGENIDY 287
>pdb|2CHU|A Chain A, Ceue In Complex With Mecam
pdb|2CHU|B Chain B, Ceue In Complex With Mecam
Length = 296
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 79 KHTEKFQNITQIYGWEPQYYENIGELPPE--IIYGWEPQYYENIGELPPEM 127
K+ ++F+N + G + +E I L P+ II G + ++Y+ + E+ P +
Sbjct: 69 KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTL 119
>pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7N|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal 5'-Phosphate Cofactor
pdb|1C7O|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|B Chain B, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|C Chain C, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|D Chain D, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|E Chain E, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|F Chain F, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|G Chain G, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
pdb|1C7O|H Chain H, Crystal Structure Of Cystalysin From Treponema Denticola
Contains A Pyridoxal
5'-Phosphate-L-Aminoethoxyvinylglycine Complex
Length = 399
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 99 ENIGELPPEIIYGWEPQYYENIGEL---------PPEMPESLKKHINDTALG 141
+N+G L +++Y P+ + L PPE+ E LKK++++T LG
Sbjct: 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLG 63
>pdb|2AR3|A Chain A, E90a Mutant Structure Of Plyl
pdb|2AR3|B Chain B, E90a Mutant Structure Of Plyl
pdb|2AR3|C Chain C, E90a Mutant Structure Of Plyl
Length = 160
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 147 QTVWVSCDGESPADREHIGPVEIYPQHGTPGYYYPYENKEGYLSPVLAVH 196
+ W DG P +RE I Y + G YY N + +++++
Sbjct: 70 RNAWACGDGNGPGNRESISVAICYSKSGGDRYYKAENNAVDVVRQLMSMY 119
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme
M Oxidoreductase Carboxylase With A Coenzyme M
Disulfide Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme
M Oxidoreductase Carboxylase With A Coenzyme M
Disulfide Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed
Disulfide Between Coenzyme M And Nadph-Dependent
Oxidoreductase 2- Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed
Disulfide Between Coenzyme M And Nadph-Dependent
Oxidoreductase 2- Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 43 IWFKANNHTNVQKWTRKIDDFLE 65
+W N+H + +W +ID+ LE
Sbjct: 3 VWNARNDHLTINQWATRIDEILE 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,861,492
Number of Sequences: 62578
Number of extensions: 418822
Number of successful extensions: 1025
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 20
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)