Query psy9809
Match_columns 237
No_of_seqs 107 out of 310
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:15:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01107 Na_K_ATPase_bet Sodi 100.0 2E-64 4.4E-69 452.6 15.9 200 1-237 58-288 (289)
2 PF00287 Na_K-ATPase: Sodium / 100.0 1E-63 2.3E-68 449.8 9.4 203 1-233 59-289 (289)
3 KOG3927|consensus 100.0 1.7E-58 3.7E-63 414.6 14.8 208 1-237 66-297 (300)
4 PF07117 DUF1373: Protein of u 63.6 8.6 0.00019 32.5 3.4 30 148-185 3-35 (210)
5 cd08690 C2_Freud-1 C2 domain f 44.8 85 0.0018 25.9 6.4 27 207-235 79-105 (155)
6 COG1709 Predicted transcriptio 19.8 82 0.0018 28.0 2.3 20 188-207 181-200 (241)
7 PF13895 Ig_2: Immunoglobulin 18.8 1.1E+02 0.0025 20.3 2.5 25 191-215 2-26 (80)
8 PF13927 Ig_3: Immunoglobulin 15.5 1.3E+02 0.0029 19.5 2.1 25 191-215 2-27 (75)
9 PF04126 Cyclophil_like: Cyclo 15.3 1.9E+02 0.0042 22.6 3.3 47 163-209 61-120 (120)
10 COG1607 Acyl-CoA hydrolase [Li 14.3 2.1E+02 0.0045 23.9 3.3 19 202-220 86-104 (157)
No 1
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=100.00 E-value=2e-64 Score=452.56 Aligned_cols=200 Identities=27% Similarity=0.484 Sum_probs=178.4
Q ss_pred CEEEeeecCCCCceeeecccccCCCCceeecCCCCCCCCceEEEEEcCCCccHHHHHHHHHHHHHHhhhhcccCC--cCC
Q psy9809 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKNVLNFGH--WAF 78 (237)
Q Consensus 1 m~v~~~tld~~~P~~~~~~s~ig~~PGL~~rP~~~~~~~~~~I~f~~~~~~s~~~yv~~l~~fL~~Y~~~~~~~~--~~c 78 (237)
|||||+|||+++|+|| ++. ++||||+||.. +.++|+|+++++++|++|+++|++||++|++..|..+ ..|
T Consensus 58 m~v~l~Tl~~~~Pk~q-~~~---~~PGL~~rP~~----~~~eI~f~~~~~~s~~~yv~~l~~FL~~Y~~~~q~~~~~~~C 129 (289)
T TIGR01107 58 IQVMLQTISDFTPKYQ-DRV---ASPGLTQRPKV----QKLEISFNVSDPSSYEGYVQNLHKFLKPYNDSAQEDKNLFDC 129 (289)
T ss_pred HHHHHHHcCCCCCCCC-cCC---CCCceeeccCC----CceEEEEeCCChHHHHHHHHHHHHHHHhhchhhccccccccC
Confidence 7899999999999999 443 58999999964 4678999999999999999999999999999776333 678
Q ss_pred CCcc----cc----c-----cc-cccccccCCCCCC-----CCCCCC------ceeeCeeeccccCCCCCCCCCChhHHH
Q psy9809 79 KHTE----KF----Q-----NI-TQIYGWEPQYYEN-----IGELPP------EIIYGWEPQYYENIGELPPEMPESLKK 133 (237)
Q Consensus 79 ~~~~----~~----~-----~~-F~~~~lg~Cs~~~-----y~~g~P------NrI~gw~P~~y~~~~~lp~~~P~~L~~ 133 (237)
..+. +. + .+ |++++||+||+.+ |++|+| ||||||+|+ +
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~C~F~~~~Lg~Cs~~~D~~fGY~~GkPCI~iKLNrIig~~P~--~--------------- 192 (289)
T TIGR01107 130 GDGAEYEQRGPFNAPYGTKKACQFKRDWLGNCSGLNDPTFGYSEGKPCIIIKMNRIIGFKPK--N--------------- 192 (289)
T ss_pred CccccccccCCccccccccccceecHHhccCCCCCCCCCcCcCCCCCeEEEEeeeeeCcccC--C---------------
Confidence 5321 10 1 23 9999999999844 999999 999999998 1
Q ss_pred HhhhcccccccccceeeEeeeecCCCCCCCCcceEEeCCCC-CCCccccccC---CCCCCCCeEEEEecCCCCCcEEEEE
Q psy9809 134 HINDTALGDILKMQTVWVSCDGESPADREHIGPVEIYPQHG-TPGYYYPYEN---KEGYLSPVLAVHFKNPKLNTLINVD 209 (237)
Q Consensus 134 ~i~~~~~~~~~~~~~iwv~C~g~~~~d~e~lg~i~Y~P~~g-fp~~YfPy~n---~~~Y~~PlVAVqf~n~~~n~~v~Ve 209 (237)
.+.|||+|+|++++|.|++|+|+|||.+| ||++||||+| |++|+||||||||.|+++|++|+||
T Consensus 193 ------------~~~i~v~C~~~~~~d~e~~g~i~YyP~~G~f~~~YfPY~gk~~q~~YlqPLVAVqf~~~~~n~~v~Ve 260 (289)
T TIGR01107 193 ------------PGVPPVDCTGKRDEDDENIGNVEYYPMNGGFPLQYFPYYGKKLQPNYLQPLVAVQFTNLTMNTEVRIE 260 (289)
T ss_pred ------------CCCCceEecccCccccccccceEECCCCCCcCcccccccCcccCcCCcCCeEEEEeecCCCCcEEEEE
Confidence 12599999999999999999999999987 9999999998 9999999999999999999999999
Q ss_pred EEeecCCCccCCCCCCcceEEEEEEEeC
Q psy9809 210 CRAWAKNIIYKKSLVNREGSVHFEIMVD 237 (237)
Q Consensus 210 Ck~wAkNI~~~~~~~~~~G~V~F~l~vd 237 (237)
|||||+||.++++|++++|+|+|+|+||
T Consensus 261 Ck~~a~NI~~~~~~d~~~G~v~f~l~i~ 288 (289)
T TIGR01107 261 CKIYGENIAYSNEKDRFLGRVDFKITIK 288 (289)
T ss_pred EEEeccCCccCCCccccCCeEEEEEEec
Confidence 9999999999999999999999999997
No 2
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=100.00 E-value=1e-63 Score=449.79 Aligned_cols=203 Identities=39% Similarity=0.747 Sum_probs=129.3
Q ss_pred CEEEeeecCCCCceeeecccccCCCCceeecCCCCCCCCceEEEEEcCCCccHHHHHHHHHHHHHHhhhhcccCCcCCCC
Q psy9809 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKNVLNFGHWAFKH 80 (237)
Q Consensus 1 m~v~~~tld~~~P~~~~~~s~ig~~PGL~~rP~~~~~~~~~~I~f~~~~~~s~~~yv~~l~~fL~~Y~~~~~~~~~~c~~ 80 (237)
|||||+|||+++|+|| ++ |++||||+||++.. ++++|+|+.+++++|++|+++|++||++|++..+.....|..
T Consensus 59 m~v~l~tld~~~Pk~~-~~---~~~PGL~~rP~~~~--~s~~I~f~~s~~~s~~~yv~~L~~FL~~Y~~~~~~~~~~C~~ 132 (289)
T PF00287_consen 59 MWVFLQTLDPDVPKYQ-DR---GSNPGLGFRPNPDT--ESTLISFNASDPSSYQPYVDRLDEFLKPYNDSSQKNNENCDP 132 (289)
T ss_dssp HHHHHHTSSSSS-S-S-TT---S-S--EEESS--TT----SEEEE-TT-SGGGHHHHHHHHHHHHCC-TTTS-SEE---S
T ss_pred HHHHHHHCCCCCCcee-cc---cccceeeecCCCCc--CcceEEEECCCchhHHHHHHHHHHHHHHhccccccccccCCC
Confidence 7899999999999999 55 57999999999863 789999999999999999999999999999988766788875
Q ss_pred ccc-----cc-------cc-cccccccCCCCCC-----CCCCCC------ceeeCeeeccccCCCCCCCCCChhHHHHhh
Q psy9809 81 TEK-----FQ-------NI-TQIYGWEPQYYEN-----IGELPP------EIIYGWEPQYYENIGELPPEMPESLKKHIN 136 (237)
Q Consensus 81 ~~~-----~~-------~~-F~~~~lg~Cs~~~-----y~~g~P------NrI~gw~P~~y~~~~~lp~~~P~~L~~~i~ 136 (237)
+.. +. .+ |++++||+|++++ |++|+| ||||||+|++..+
T Consensus 133 g~~~~~~~~~~~~~~~~~C~F~~~~lg~Cs~~~d~~~GY~~g~PCI~lKlNri~gw~P~~~~~----------------- 195 (289)
T PF00287_consen 133 GQYFEQPDFGSPNPPKKACQFDRSWLGPCSGENDPTFGYSSGKPCIFLKLNRIIGWKPEPIDE----------------- 195 (289)
T ss_dssp -S----SSSSSSSSS--EE---GGGSTTS----SSS----SSS-EEEEEE---BT---S-TT------------------
T ss_pred cceeecCccccCCCCCcEeEEechhhccCCCCCCCCccccCCCceEEEEcccccCcccccccc-----------------
Confidence 432 11 12 9999999999854 899999 9999999996221
Q ss_pred hcccccccccceeeEeeeecCCCCCCCCcceEEeCCC-CCCCccccccC---CCCCCCCeEEEEecCCCCCcEEEEEEEe
Q psy9809 137 DTALGDILKMQTVWVSCDGESPADREHIGPVEIYPQH-GTPGYYYPYEN---KEGYLSPVLAVHFKNPKLNTLINVDCRA 212 (237)
Q Consensus 137 ~~~~~~~~~~~~iwv~C~g~~~~d~e~lg~i~Y~P~~-gfp~~YfPy~n---~~~Y~~PlVAVqf~n~~~n~~v~VeCk~ 212 (237)
.+.+.|||+|++++++|.|++|.|+|||.+ |||.+||||+| |++|+||||||||.|+++|++|+|||||
T Consensus 196 -------~~~~~i~v~C~~~~~~d~~~i~~i~y~P~~ggf~~~YfPy~~k~~~~~Y~~PlVAVqf~n~~~n~~i~veCk~ 268 (289)
T PF00287_consen 196 -------YNSNKIWVSCEGENPEDKENIGPIEYYPSNGGFPLMYFPYYGKKAQPGYLSPLVAVQFTNPPRNVEINVECKA 268 (289)
T ss_dssp --------TTTEEEEEEESSSSS---S---EEEE-STSEEEGGG-SB-TTTTSTT-----EEEEESSS-SSS-EEEEEEE
T ss_pred -------ccCCcceEEeeccccccccceeeEEEECCCCCcceeECCccCCccCCCCcCCeEEEEEecCCCCcEEEEEEEE
Confidence 225689999999999999999999999999 89999999999 9999999999999999999999999999
Q ss_pred ecCCCccCCCCCCcceEEEEE
Q psy9809 213 WAKNIIYKKSLVNREGSVHFE 233 (237)
Q Consensus 213 wAkNI~~~~~~~~~~G~V~F~ 233 (237)
|||||+++++|++++|+|+|+
T Consensus 269 wakNI~~d~~~~~~~G~V~F~ 289 (289)
T PF00287_consen 269 WAKNIPYDDERDKFLGRVHFK 289 (289)
T ss_dssp -STT----SSS-TTSSB--EE
T ss_pred eCCCCCCCCcCCcccEEEEeC
Confidence 999999987789999999997
No 3
>KOG3927|consensus
Probab=100.00 E-value=1.7e-58 Score=414.57 Aligned_cols=208 Identities=32% Similarity=0.645 Sum_probs=184.5
Q ss_pred CEEEeeecCCCCceeeecccccCCCCceeecCCCCCCCCceEEEEEcCCCccHHHHHHHHHHHHHHhhhhcccC-CcCCC
Q psy9809 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKNVLNFG-HWAFK 79 (237)
Q Consensus 1 m~v~~~tld~~~P~~~~~~s~ig~~PGL~~rP~~~~~~~~~~I~f~~~~~~s~~~yv~~l~~fL~~Y~~~~~~~-~~~c~ 79 (237)
||+||+|||+++|+|+ ++ |++||||+||.+... ++++|+|+.+++++|+.|+++|++||++|++.+++. +..|.
T Consensus 66 ~~~~~~tidp~~P~~~-~~---~~~PGl~~~P~~~~~-~~~~i~~~~~~~~~~~~~~~~i~~fL~kY~d~~~~~~~~~~~ 140 (300)
T KOG3927|consen 66 MWFMLQTIDPKVPKYK-DS---GANPGLSFRPNPPRT-DSTLISFNPSDPKSYANYVDRIDDFLKKYNDNGQEPRMGVNI 140 (300)
T ss_pred HHHHHHhcCCCCCccc-cc---CCCCceeecCCCCcC-cceeEEEeCCChhhHHHHHHHHHHHHHhhCcccccccccccC
Confidence 6899999999999999 55 789999999999865 899999999999999999999999999999987633 33443
Q ss_pred Cccccc-------cc-cccccccCCC--CCC---CCCCCC------ceeeCeeeccccCCCCCCCCCChhHHHHhhhccc
Q psy9809 80 HTEKFQ-------NI-TQIYGWEPQY--YEN---IGELPP------EIIYGWEPQYYENIGELPPEMPESLKKHINDTAL 140 (237)
Q Consensus 80 ~~~~~~-------~~-F~~~~lg~Cs--~~~---y~~g~P------NrI~gw~P~~y~~~~~lp~~~P~~L~~~i~~~~~ 140 (237)
...-+. .+ ||++.|++|+ .++ |++|+| |||+||+|+.|+...
T Consensus 141 ~~~~~~q~~~~~~~ckfd~~~f~~cs~~~d~~~Gy~~g~Pci~iklNri~G~~Pe~~~~~n------------------- 201 (300)
T KOG3927|consen 141 DNCWFYQPGTPTVACKFDLDGFGNCSGSNDDNFGYSKGQPCIFLKLNRILGWKPELYNRPN------------------- 201 (300)
T ss_pred cccccccCCCCCceEEecHHHcCcCccccCCCccccCCCceEEEEeeeecCCccccCCCcC-------------------
Confidence 332221 12 9999999996 333 899999 999999999988644
Q ss_pred ccccccceeeEeeeecCCCCCCCCcceEEeCCCC-CCCcccccc---CCCCCCCCeEEEEecCCCCCcEEEEEEEeecCC
Q psy9809 141 GDILKMQTVWVSCDGESPADREHIGPVEIYPQHG-TPGYYYPYE---NKEGYLSPVLAVHFKNPKLNTLINVDCRAWAKN 216 (237)
Q Consensus 141 ~~~~~~~~iwv~C~g~~~~d~e~lg~i~Y~P~~g-fp~~YfPy~---n~~~Y~~PlVAVqf~n~~~n~~v~VeCk~wAkN 216 (237)
.+.+.|||+|+|+++.|.|++|.++|+|.+| ||++||||+ +|++|+||||||||.|+++|++|+|||||||+|
T Consensus 202 ---~~~~~i~vsC~g~~~~D~e~i~~~~y~p~~g~f~~~Y~Py~gk~~~~~y~~plvavkf~ni~~n~~v~IeCka~a~n 278 (300)
T KOG3927|consen 202 ---KEPNVIWVSCEGKNPFDYENIGKVAYFPETGDFPLEYYPYYGKKNQPGYLQPLVAVKFTNIPRNEEVNIECKAWAEN 278 (300)
T ss_pred ---cccCceeEEecccCccchhcccceeeeccCCCCCceecCccccccCCCccCceEEEecCCCCCCceEEEEeeccccc
Confidence 2356899999999999999999999999999 999999999 899999999999999999999999999999999
Q ss_pred CccCCCCCCcceEEEEEEEeC
Q psy9809 217 IIYKKSLVNREGSVHFEIMVD 237 (237)
Q Consensus 217 I~~~~~~~~~~G~V~F~l~vd 237 (237)
|.+ +++.+.|+|+|+|+|+
T Consensus 279 ~~~--~~~~~~g~V~f~l~i~ 297 (300)
T KOG3927|consen 279 INH--DRDTFGGRVRFELLIE 297 (300)
T ss_pred Ccc--hhhhhcceEEEEEecc
Confidence 888 8999999999999985
No 4
>PF07117 DUF1373: Protein of unknown function (DUF1373); InterPro: IPR009803 This family consists of several hypothetical proteins which seem to be specific to Oryzias latipes (Japanese ricefish). Members of this family are typically around 200 residues in length. The function of this family is unknown.
Probab=63.63 E-value=8.6 Score=32.51 Aligned_cols=30 Identities=37% Similarity=0.879 Sum_probs=25.1
Q ss_pred eeeEeeeecCCCCCCCCcceEEeCCCC---CCCccccccCC
Q psy9809 148 TVWVSCDGESPADREHIGPVEIYPQHG---TPGYYYPYENK 185 (237)
Q Consensus 148 ~iwv~C~g~~~~d~e~lg~i~Y~P~~g---fp~~YfPy~n~ 185 (237)
-+||+|- .||.|.-+|..| ++...+||.+|
T Consensus 3 ~Lwiscl--------liGsi~C~PQg~~~~~~~~~~~ysGQ 35 (210)
T PF07117_consen 3 VLWISCL--------LIGSISCFPQGGGGNMPSPMPPYSGQ 35 (210)
T ss_pred eEeeeeh--------hccceeeeccCCCCCCCCCcccccCc
Confidence 5899998 678899999764 77778899886
No 5
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=44.84 E-value=85 Score=25.87 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=20.5
Q ss_pred EEEEEeecCCCccCCCCCCcceEEEEEEE
Q psy9809 207 NVDCRAWAKNIIYKKSLVNREGSVHFEIM 235 (237)
Q Consensus 207 ~VeCk~wAkNI~~~~~~~~~~G~V~F~l~ 235 (237)
.+.|.+|.++--. .+++.+|++.+.|.
T Consensus 79 ~L~~~V~d~~~f~--~~D~~iG~~~i~L~ 105 (155)
T cd08690 79 GLKFEVYHKGGFL--RSDKLLGTAQVKLE 105 (155)
T ss_pred cEEEEEEeCCCcc--cCCCeeEEEEEEcc
Confidence 4889999887543 34678999998873
No 6
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=19.80 E-value=82 Score=27.96 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=16.8
Q ss_pred CCCCeEEEEecCCCCCcEEE
Q psy9809 188 YLSPVLAVHFKNPKLNTLIN 207 (237)
Q Consensus 188 Y~~PlVAVqf~n~~~n~~v~ 207 (237)
-.||+|||+..++++...|-
T Consensus 181 GRSPMVAirV~~lKP~aVVl 200 (241)
T COG1709 181 GRSPMVAIRVSPLKPAAVVL 200 (241)
T ss_pred CCCceEEEEccCCCccEEEE
Confidence 37999999999999886654
No 7
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=18.84 E-value=1.1e+02 Score=20.26 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=18.2
Q ss_pred CeEEEEecCCCCCcEEEEEEEeecC
Q psy9809 191 PVLAVHFKNPKLNTLINVDCRAWAK 215 (237)
Q Consensus 191 PlVAVqf~n~~~n~~v~VeCk~wAk 215 (237)
|.+-..-..+..+..+.+.|.+.+.
T Consensus 2 P~l~~~~~~v~~g~~~~l~C~~~~~ 26 (80)
T PF13895_consen 2 PVLSSSPQSVEEGDSVTLTCSVSGN 26 (80)
T ss_dssp -EEEEESSEEETTSEEEEEEEEESS
T ss_pred cEEEccceEEeCCCcEEEEEEEEcc
Confidence 4555555567789999999999853
No 8
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=15.54 E-value=1.3e+02 Score=19.48 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=15.2
Q ss_pred CeEEEEecCCCCCcE-EEEEEEeecC
Q psy9809 191 PVLAVHFKNPKLNTL-INVDCRAWAK 215 (237)
Q Consensus 191 PlVAVqf~n~~~n~~-v~VeCk~wAk 215 (237)
|-|-++......... +.++|++.+-
T Consensus 2 P~I~~~~~~~~~~~~~~~l~C~~~~~ 27 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGSVTLTCSAEGG 27 (75)
T ss_dssp SEEEEESTSEEETTEEEEEEEEESSE
T ss_pred CEEEEcCCCcEeeceeEEEEEEEccc
Confidence 455555444433333 9999999764
No 9
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=15.31 E-value=1.9e+02 Score=22.59 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCcceEEeCCCC-CCCcc--cccc--CCCCCCCCeEEEE--------ecCCCCCcEEEEE
Q psy9809 163 HIGPVEIYPQHG-TPGYY--YPYE--NKEGYLSPVLAVH--------FKNPKLNTLINVD 209 (237)
Q Consensus 163 ~lg~i~Y~P~~g-fp~~Y--fPy~--n~~~Y~~PlVAVq--------f~n~~~n~~v~Ve 209 (237)
..|.|.|+|..+ |=..| +|+. +.+.+-+|++-+= |..+.-+..|+||
T Consensus 61 ~~GDi~Yw~pg~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~~~V~ie 120 (120)
T PF04126_consen 61 EAGDIAYWPPGGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGGEKVRIE 120 (120)
T ss_dssp -TTEEEEECCCTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TTEEEEEE
T ss_pred cCceEEEeCCCCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCCCeEEeC
Confidence 568899997554 43334 4554 2345667776542 5556666666665
No 10
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=14.33 E-value=2.1e+02 Score=23.87 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.3
Q ss_pred CCcEEEEEEEeecCCCccC
Q psy9809 202 LNTLINVDCRAWAKNIIYK 220 (237)
Q Consensus 202 ~n~~v~VeCk~wAkNI~~~ 220 (237)
-.+.+.|.+++|++++...
T Consensus 86 GrTSm~V~Vev~~~~~~~~ 104 (157)
T COG1607 86 GRTSMEVGVEVWAEDIRSG 104 (157)
T ss_pred CcccEEEEEEEEEecccCC
Confidence 4588999999999999883
Done!