Query psy9809
Match_columns 237
No_of_seqs 107 out of 310
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 20:15:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9809.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9809hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fcba1 b.1.1.4 (A:6-90) Fc ga 24.1 18 0.0013 23.0 2.0 26 190-215 4-31 (85)
2 d2ifga1 b.1.1.4 (A:192-283) Hi 22.8 41 0.003 21.2 3.7 26 190-215 2-29 (92)
3 d2oz4a1 b.1.1.3 (A:283-366) In 21.0 21 0.0015 24.0 1.7 26 190-215 3-28 (84)
4 d1y88a2 c.52.1.30 (A:3-127) Hy 19.0 36 0.0026 23.5 2.9 18 202-219 42-59 (125)
5 d1fnla1 b.1.1.4 (A:3-86) Fc ga 18.4 26 0.0019 22.1 1.8 26 190-215 5-32 (84)
6 d1iray3 b.1.1.4 (Y:205-311) Ty 14.9 42 0.0031 21.6 2.3 17 199-215 13-29 (107)
7 d1ugka_ b.7.1.2 (A:) Synaptota 14.0 95 0.0069 21.1 4.2 45 187-234 67-115 (138)
8 d1u5da1 b.55.1.1 (A:108-213) S 12.8 80 0.0058 19.9 3.3 27 41-67 79-105 (106)
9 d2bi0a1 d.38.1.4 (A:8-185) Hyp 12.1 1.8E+02 0.013 20.8 5.5 42 195-236 90-132 (178)
10 d1zx8a1 b.62.1.3 (A:1-124) Hyp 11.3 88 0.0064 22.0 3.2 48 162-209 61-120 (124)
No 1
>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}
Probab=24.06 E-value=18 Score=22.97 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=20.5
Q ss_pred CCeEEEEe--cCCCCCcEEEEEEEeecC
Q psy9809 190 SPVLAVHF--KNPKLNTLINVDCRAWAK 215 (237)
Q Consensus 190 ~PlVAVqf--~n~~~n~~v~VeCk~wAk 215 (237)
.|.|.++- ..+..|+.|.+.|.+++.
T Consensus 4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~ 31 (85)
T d2fcba1 4 KAVLKLEPQWINVLQEDSVTLTCRGTHS 31 (85)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEECSSC
T ss_pred CCEEEECCCCeEEcCCCeEEEEEEEeec
Confidence 57788774 346789999999999875
No 2
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.84 E-value=41 Score=21.21 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=19.9
Q ss_pred CCeEEEEecCCC--CCcEEEEEEEeecC
Q psy9809 190 SPVLAVHFKNPK--LNTLINVDCRAWAK 215 (237)
Q Consensus 190 ~PlVAVqf~n~~--~n~~v~VeCk~wAk 215 (237)
.|.|-++..+.. .|..+.++|.+.|.
T Consensus 2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~ 29 (92)
T d2ifga1 2 VPTLKVQVPNASVDVGDDVLLRCQVEGR 29 (92)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECS
T ss_pred CCEEEEeCCCEEEeCCCEEEEeeeccCC
Confidence 377777766544 67899999999875
No 3
>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.96 E-value=21 Score=23.97 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.3
Q ss_pred CCeEEEEecCCCCCcEEEEEEEeecC
Q psy9809 190 SPVLAVHFKNPKLNTLINVDCRAWAK 215 (237)
Q Consensus 190 ~PlVAVqf~n~~~n~~v~VeCk~wAk 215 (237)
.|++-+-=..+..++.|+|+|.+-+.
T Consensus 3 ~P~Ltlsep~v~eGt~VtVtC~a~~~ 28 (84)
T d2oz4a1 3 APNVILTKPEVSEGTEVTVKCEAHPR 28 (84)
T ss_dssp CCEEEESCSEEETTCEEEEEEECCTT
T ss_pred CCceEeccCcCCCCCEEEEEEecCCC
Confidence 34444444456789999999998754
No 4
>d1y88a2 c.52.1.30 (A:3-127) Hypothetical protein AF1548, N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.99 E-value=36 Score=23.50 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=14.6
Q ss_pred CCcEEEEEEEeecCCCcc
Q psy9809 202 LNTLINVDCRAWAKNIIY 219 (237)
Q Consensus 202 ~n~~v~VeCk~wAkNI~~ 219 (237)
.+..+.||||-|++.+..
T Consensus 42 ~~~~~~VQcK~~~~~~~~ 59 (125)
T d1y88a2 42 DGERYMIECKFHNIPVYT 59 (125)
T ss_dssp TTEEEEEEECCCSSSCEE
T ss_pred CCcEEEEEEEEeccCCCC
Confidence 467899999999887655
No 5
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=18.35 E-value=26 Score=22.12 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=20.2
Q ss_pred CCeEEEEec--CCCCCcEEEEEEEeecC
Q psy9809 190 SPVLAVHFK--NPKLNTLINVDCRAWAK 215 (237)
Q Consensus 190 ~PlVAVqf~--n~~~n~~v~VeCk~wAk 215 (237)
.|+|.++=. .+..|+.|.++|.+.+.
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~ 32 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQGAYS 32 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCB
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEeccC
Confidence 477887743 46689999999999875
No 6
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.88 E-value=42 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.8
Q ss_pred CCCCCcEEEEEEEeecC
Q psy9809 199 NPKLNTLINVDCRAWAK 215 (237)
Q Consensus 199 n~~~n~~v~VeCk~wAk 215 (237)
....|..+.++|+|.|.
T Consensus 13 ~v~~G~~v~l~C~v~g~ 29 (107)
T d1iray3 13 EVDLGSQIQLICNVTGQ 29 (107)
T ss_dssp ECCTTCCEEEEEEEEEC
T ss_pred EEeCCCEEEEEEEeccC
Confidence 35679999999998765
No 7
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.96 E-value=95 Score=21.13 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=28.1
Q ss_pred CCCCCeEEEEec--CCCCC--cEEEEEEEeecCCCccCCCCCCcceEEEEEE
Q psy9809 187 GYLSPVLAVHFK--NPKLN--TLINVDCRAWAKNIIYKKSLVNREGSVHFEI 234 (237)
Q Consensus 187 ~Y~~PlVAVqf~--n~~~n--~~v~VeCk~wAkNI~~~~~~~~~~G~V~F~l 234 (237)
+-++|.--=+|. .++.. ....+++++|..+.. .+++.+|.+.|.|
T Consensus 67 ~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~---~~~~~iG~~~i~L 115 (138)
T d1ugka_ 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRF---SRDDIIGEVLIPL 115 (138)
T ss_dssp SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSS---CCCCCCEEEEEEC
T ss_pred CCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCC---CCCcEEEEEEEEc
Confidence 345666655543 44443 234678889976432 3567899999876
No 8
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.83 E-value=80 Score=19.85 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHHHHHHh
Q psy9809 41 ALIWFKANNHTNVQKWTRKIDDFLERL 67 (237)
Q Consensus 41 ~~I~f~~~~~~s~~~yv~~l~~fL~~Y 67 (237)
..+.|-+.+..+-..|++.|...++.+
T Consensus 79 ~~~~f~a~s~~e~~~W~~ai~~~i~~l 105 (106)
T d1u5da1 79 RTYEFTATSPAEARDWVDQISFLLKDL 105 (106)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999999999765
No 9
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.06 E-value=1.8e+02 Score=20.82 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=26.1
Q ss_pred EEecCCC-CCcEEEEEEEeecCCCccCCCCCCcceEEEEEEEe
Q psy9809 195 VHFKNPK-LNTLINVDCRAWAKNIIYKKSLVNREGSVHFEIMV 236 (237)
Q Consensus 195 Vqf~n~~-~n~~v~VeCk~wAkNI~~~~~~~~~~G~V~F~l~v 236 (237)
++|.+|. .|..|+++.++-++.-......+...|-|.++..+
T Consensus 90 ~rf~~PV~~GDTl~~~~eV~~~r~~~srp~~~~~GiV~~~~~~ 132 (178)
T d2bi0a1 90 LRFHRFPAVGDTLYTRTEVVGLRANSPKPGRAPTGLAGLRMTT 132 (178)
T ss_dssp EEBSSCCBTTCEEEEEEEEEEEEECCCCTTSCCEEEEEEEEEE
T ss_pred eEEeeeccCCCEEEEEEEEEEEEecCCCCCCCcceEEEEEEEE
Confidence 6777665 78888999888776322211112246888887653
No 10
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}
Probab=11.30 E-value=88 Score=21.95 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCCcceEEeCCCC-CCCcc--ccccCC-CCCCCCeEEE--------EecCCCCCcEEEEE
Q psy9809 162 EHIGPVEIYPQHG-TPGYY--YPYENK-EGYLSPVLAV--------HFKNPKLNTLINVD 209 (237)
Q Consensus 162 e~lg~i~Y~P~~g-fp~~Y--fPy~n~-~~Y~~PlVAV--------qf~n~~~n~~v~Ve 209 (237)
-.+|.|.|+|..| |-..| +|+.+. ...-+|++-+ .+.+++-+..|.||
T Consensus 61 ~~~GDiaYw~pg~~iaifyg~tp~S~~~irlas~~n~iGki~~~~~~l~~i~~g~~V~Ie 120 (124)
T d1zx8a1 61 VEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVR 120 (124)
T ss_dssp BCTTEEEEEGGGTEEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCCTTCEEEEE
T ss_pred cccccEEEECCCCEEEEEECCccCCCCcccccCcceEeEEecCCHHHHhcCCCCCEEEEE
Confidence 3589999998654 44444 566642 2233555432 14466677777776
Done!