RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9809
(237 letters)
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 151 bits (382), Expect = 6e-45
Identities = 53/272 (19%), Positives = 102/272 (37%), Gaps = 59/272 (21%)
Query: 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKI 60
++VLL TL++ P++Q + PGL + P + I F +N + + + + +
Sbjct: 55 IQVLLLTLSDFEPKYQDRVA----PPGLSHAPYAIKTE----ISFSISNPKSYESFVKSM 106
Query: 61 DDFLERLKNVLNFGHWAFK--HTEKFQNITQIYGWEPQY--------YENIGELPPEI-- 108
++ G+ F+ I + + Q +
Sbjct: 107 HKLMDLYNESSQAGNSPFEDCSDTPADYIKRGDLDDSQGQKKACRFSRMWLKNCSGLDDT 166
Query: 109 -----------------IYGWEPQYYENIGELPPEMPESLKKHINDTALGDILKMQTVWV 151
I G+ P+ +N +LP E+ + +++ + +
Sbjct: 167 TYGYAEGKPCVVAKLNRIIGFYPKPLKNTTDLPEELQANYNQYV-------------LPL 213
Query: 152 SCDGESPADREHIGPVEIYPQHGTPG---YYYPYENK---EGYLSPVLAVHFKNPKLNTL 205
C + DRE IG +E + G G YYPY K + YL P+LA+ F N N
Sbjct: 214 RCAAKREEDREKIGSIEYFGLGGYAGFPLQYYPYYGKRLQKKYLQPLLAIQFTNLTQNME 273
Query: 206 INVDCRAWAKNIIYKKSLVNREGSVHFEIMVD 237
+ ++C+ + +NI Y + FE+ ++
Sbjct: 274 LRIECKVYGENIDYSEK---DRFRGRFEVKIE 302
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 149 bits (376), Expect = 4e-44
Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 62/265 (23%)
Query: 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKI 60
+ VL+ T++ + P +Q +PG+ RP G I + ++ T +
Sbjct: 59 IYVLMRTIDPYTPDYQDQLK----SPGVTLRPDVYGEK-GLDISYNVSDSTTWAGLAHTL 113
Query: 61 DDFLERL-----KNVLNFGHWAFKHTEKFQNITQIY---GWEPQYYENIGELP------- 105
FL + +N + E F + +N P
Sbjct: 114 HRFLAGYSPAAQEGSINCTSEKYFFQESFLAPNHTKFSCKFTADMLQNCSGRPDPTFGFA 173
Query: 106 ---PEII------YGWEPQYYENIGELPPEMPESLKKHINDTALGDILKMQTVWVSCDGE 156
P I + P V C
Sbjct: 174 EGKPCFIIKMNRIVKFLPGNS-----------------------------TAPRVDCAFL 204
Query: 157 SPADREHIGPVEIYPQHGT-PGYYYPYENKE---GYLSPVLAVHFKNPKLNTLINVDCRA 212
VE +P +GT +Y+PY K+ Y +P++A N N + + C+
Sbjct: 205 DQPRDGPPLQVEYFPANGTYSLHYFPYYGKKAQPHYSNPLVAAKLLNVPRNRDVVIVCKI 264
Query: 213 WAKNIIYKKSLVNREGSVHFEIMVD 237
A+++ + EG V F++ +
Sbjct: 265 LAEHVSFDNPHDPYEGKVEFKLKIQ 289
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 148 bits (374), Expect = 6e-44
Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 30/258 (11%)
Query: 1 MKVLLSTLNNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKI 60
++V+L T++ P +Q + PGL P + I F+ N+ + + + I
Sbjct: 37 IQVMLLTISEFKPTYQDRVA----PPGLTQIPQSQKTE----ISFRPNDPQSYESYVVSI 88
Query: 61 DDFLERLKNV--LNFGHWAFKHTEKFQNITQIYGWEPQY--------YENIGE--LPPEI 108
FLE+ K++ + + + + + E +G +
Sbjct: 89 VRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGERKVCRSRLEWLGNCSGLNDE 148
Query: 109 IYGWE---PQYYENIGELPPEMPESLKKHINDTALGDILKMQTVWVSCDGESPADREHIG 165
YG++ P + + P+ K +T + V C G+ D+E +G
Sbjct: 149 TYGYKDGKPCVIIKLNRVLGFKPKPPKNESLETYPVMKYNPYVLPVHCTGKRDEDKEKVG 208
Query: 166 PVEIYPQHGTPGY---YYPYENK---EGYLSPVLAVHFKNPKLNTLINVDCRAWAKNIIY 219
+E + G PG+ YYPY K YL P++AV F N ++T I ++C+A+ +NI Y
Sbjct: 209 TMEYFGLGGYPGFPLQYYPYYGKLLQPKYLQPLMAVQFTNLTMDTEIRIECKAYGENIGY 268
Query: 220 KKSLVNREGSVHFEIMVD 237
+ +G +I V
Sbjct: 269 SEKD-RFQGRFDVKIEVK 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 1e-04
Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 75/241 (31%)
Query: 17 LHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKNVLNFGHW 76
SII + R D W H N K T I+ L L+
Sbjct: 328 RRLSIIAES----IRDGLATWDN----W----KHVNCDKLTTIIESSLNVLE-------- 367
Query: 77 AFKHTEKFQNITQIYGWEPQYYENIGELP-----PEIIYG--WEPQYYENIGELPPEMPE 129
+++ + ++ + P P I+ W ++ + ++ +
Sbjct: 368 ----PAEYR----------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 130 S--LKKHINDTALG--DI-LKMQTVWVSCDGESPADR---EHIGPVEIYPQHGTP----- 176
++K ++ + I L+++ V + E R +H + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 177 GYYYPYENKEGYLSPVLAVHFKNPK------LNTLINVDCRAWAKN-IIYKKSLVNREGS 229
Y+Y + + H KN + L ++ +D R + + I + + N GS
Sbjct: 471 QYFYSH----------IGHHLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGS 519
Query: 230 V 230
+
Sbjct: 520 I 520
Score = 32.5 bits (73), Expect = 0.13
Identities = 16/131 (12%), Positives = 44/131 (33%), Gaps = 26/131 (19%)
Query: 107 EIIYGWEPQYYENIGELPPEMPESLKKHINDTALGDILKMQT--------VWVSCDGESP 158
+I+ +E + +N ++ + K ++ + I+ + W +
Sbjct: 20 DILSVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 159 ADREHIGPVEIYPQHGTPGYYYPYENKEGYLSPVLAVHFKNPKLNTLINVDCR--AWAKN 216
++ + V Y +L + + P + T + ++ R + N
Sbjct: 78 MVQKFVEEVL------RINY--------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 217 IIYKKSLVNRE 227
++ K V+R
Sbjct: 124 QVFAKYNVSRL 134
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.15
Identities = 39/216 (18%), Positives = 62/216 (28%), Gaps = 65/216 (30%)
Query: 60 IDDFLERLKNVL-NFGHWAFKHTEKFQNITQIYGW--EPQYYENIGELPPEIIY------ 110
+ D ++ L + F I W P P+ Y
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP-------SNTPDKDYLLSIPI 236
Query: 111 GWEP--------QYY---ENIGELPPEMPESLKKHINDTALG---DILKMQTVWVSCDGE 156
P Y + +G P E+ LK A G ++ + + E
Sbjct: 237 SC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLK-----GATGHSQGLVTAVAIAETDSWE 290
Query: 157 S--PADRE------HIGPVEIYPQHGTPGYYYP-------YENKEGYLSPVLAV-HFKNP 200
S + R+ IG V P P EN EG SP+L++ +
Sbjct: 291 SFFVSVRKAITVLFFIG-VRC--YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 201 KLNTLINVDCRAWAKN----IIYKKSLVNREGSVHF 232
++ +N I SLVN G+ +
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEI----SLVN--GAKNL 377
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1,
carboxymuconolactone decarboxylase family; HET: CIT GOL;
1.65A {Burkholderia xenovorans}
Length = 141
Score = 29.5 bits (65), Expect = 0.52
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 78 FKHTEKFQNITQIYGWEPQYYENIGELPPEIIYGWEPQYYENIGELPPEMPESLK 132
+H ++ G P+ + E PE + + LK
Sbjct: 15 KQHAAHYE---SDMGGLPEALVQLAEYAPETFDAYSRMRTTMLKSEADGAKLPLK 66
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 1.8
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 97 YYENIGELPPE---IIYGWEPQYYENIG-ELPP---EMPESLKKHINDTALGDILKMQTV 149
E ++ +EP +ENI ELPP E+ N+ + ++ K T
Sbjct: 150 GLELSDTKQKGKKFLVIAYEP--FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTF 207
Query: 150 W 150
W
Sbjct: 208 W 208
Score = 27.4 bits (60), Expect = 3.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 77 AFKHTEKFQNITQ--IYGWEPQYYENIG-ELPP-EIIYGWEPQYYEN 119
+ ++ Q + + +EP +ENI ELPP EI++ N
Sbjct: 150 GLELSDTKQKGKKFLVIAYEP--FENIAIELPPNEILFSENNDMDNN 194
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 26.7 bits (58), Expect = 7.0
Identities = 13/90 (14%), Positives = 21/90 (23%)
Query: 9 NNHYPRWQLHESIIGTNPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLK 68
WQ+ + NP +G + + ++T Q W D
Sbjct: 85 VREATIWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQGWLAGNDTAPRETT 144
Query: 69 NVLNFGHWAFKHTEKFQNITQIYGWEPQYY 98
T G E Q +
Sbjct: 145 IYGFRDLCMESAGGSVYVETCTAGQENQRW 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.452
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,972,865
Number of extensions: 234458
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 21
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)