RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9809
         (237 letters)



>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 25.6 bits (55), Expect = 6.0
 Identities = 9/84 (10%), Positives = 18/84 (21%)

Query: 30  YRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKNVLNFGHWAFKHTEKFQNITQ 89
                DD          A         T  +   ++R+    N        + +   I  
Sbjct: 123 PELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAA 182

Query: 90  IYGWEPQYYENIGELPPEIIYGWE 113
                    + +  +  E I    
Sbjct: 183 HGNSLRALVKYLDNMSEEEILELN 206


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 25.5 bits (56), Expect = 6.0
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 7/61 (11%)

Query: 60  IDDFLERLKNV-LNFGHWAFKHTEKFQNITQIYGWEPQYYENIGELPPEIIYGWEPQYYE 118
           +D    R+  +     H+  +       +  IY       + I  L P I     P   +
Sbjct: 106 LDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYV------DVISPLGPRIQVTGSPAVLQ 159

Query: 119 N 119
           +
Sbjct: 160 S 160


>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
           PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
          Length = 131

 Score = 24.5 bits (53), Expect = 7.3
 Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 3/45 (6%)

Query: 25  NPGLGYRPMPDDPDQGALIWFKANNHTNVQKWTRKIDDFLERLKN 69
             G+ Y  M    +    +       + V       D  L  L  
Sbjct: 82  KKGVSYLLMGQVEENRGPV---LPPESFVVLHRPNQDQILTNLSK 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.452 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,025,447
Number of extensions: 50986
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 17
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)