Query psy9810
Match_columns 154
No_of_seqs 179 out of 1777
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:18:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 99.8 4.1E-21 8.9E-26 163.2 8.1 69 1-69 400-468 (539)
2 KOG0629|consensus 99.8 2.3E-20 4.9E-25 151.6 7.9 135 1-135 366-509 (510)
3 PF00282 Pyridoxal_deC: Pyrido 99.8 5.1E-19 1.1E-23 144.9 6.5 67 1-67 307-373 (373)
4 PLN02880 tyrosine decarboxylas 99.7 4.7E-18 1E-22 143.6 8.4 69 1-69 352-420 (490)
5 KOG0628|consensus 99.7 8.3E-17 1.8E-21 132.0 6.2 87 1-89 346-436 (511)
6 TIGR03799 NOD_PanD_pyr putativ 99.7 2.6E-16 5.6E-21 133.8 8.0 70 1-70 372-441 (522)
7 cd00683 Trans_IPPS_HH Trans-Is 99.5 7.8E-14 1.7E-18 109.3 8.4 83 72-154 6-89 (265)
8 TIGR03811 tyr_de_CO2_Ent tyros 99.5 4.5E-14 9.6E-19 121.7 7.5 69 2-70 426-505 (608)
9 TIGR01788 Glu-decarb-GAD gluta 99.5 1.6E-13 3.4E-18 114.5 7.7 68 2-69 298-367 (431)
10 PLN03032 serine decarboxylase; 99.5 1.5E-13 3.2E-18 112.7 7.4 103 1-107 266-372 (374)
11 TIGR03465 HpnD squalene syntha 99.5 3.5E-13 7.6E-18 105.8 8.7 79 75-154 3-81 (266)
12 PLN02632 phytoene synthase 99.4 6.4E-13 1.4E-17 107.5 8.1 82 72-154 55-136 (334)
13 COG0076 GadB Glutamate decarbo 99.4 4E-13 8.7E-18 112.7 6.9 68 2-69 314-382 (460)
14 PF00494 SQS_PSY: Squalene/phy 99.4 1.7E-13 3.6E-18 107.2 2.5 80 74-153 2-86 (267)
15 PLN02263 serine decarboxylase 99.4 2E-12 4.4E-17 108.4 8.7 67 1-68 333-400 (470)
16 KOG4411|consensus 99.4 2.1E-12 4.5E-17 97.9 7.8 80 72-151 17-100 (292)
17 TIGR03464 HpnC squalene syntha 99.4 3.5E-12 7.5E-17 100.2 9.0 78 76-154 4-82 (266)
18 PRK02769 histidine decarboxyla 99.2 3.2E-11 6.9E-16 99.2 8.0 103 1-108 263-369 (380)
19 COG1562 ERG9 Phytoene/squalene 99.1 5.3E-10 1.1E-14 88.8 7.5 82 72-154 16-99 (288)
20 cd06450 DOPA_deC_like DOPA dec 98.2 5.6E-06 1.2E-10 66.3 8.1 57 12-68 231-287 (345)
21 TIGR00461 gcvP glycine dehydro 97.8 4.4E-05 9.4E-10 69.2 5.8 63 4-68 737-807 (939)
22 TIGR01559 squal_synth farnesyl 97.7 8E-05 1.7E-09 60.6 6.1 60 73-134 9-68 (336)
23 KOG1383|consensus 97.3 0.00068 1.5E-08 56.8 6.5 66 3-68 327-393 (491)
24 TIGR03812 tyr_de_CO2_Arch tyro 97.2 0.00065 1.4E-08 55.0 5.7 63 6-69 264-327 (373)
25 PRK13520 L-tyrosine decarboxyl 97.2 0.00068 1.5E-08 54.8 5.7 64 6-70 259-323 (371)
26 KOG0630|consensus 96.6 0.0033 7.1E-08 53.5 4.7 50 6-55 391-440 (838)
27 PRK04366 glycine dehydrogenase 96.3 0.018 3.8E-07 49.0 7.6 51 13-65 333-384 (481)
28 cd06453 SufS_like Cysteine des 95.7 0.04 8.7E-07 44.6 6.9 57 12-68 258-316 (373)
29 PRK05367 glycine dehydrogenase 95.6 0.03 6.5E-07 51.5 6.3 56 11-68 756-815 (954)
30 TIGR01977 am_tr_V_EF2568 cyste 95.0 0.11 2.4E-06 41.9 7.2 56 13-68 254-313 (376)
31 PRK00451 glycine dehydrogenase 94.9 0.13 2.7E-06 43.0 7.3 54 13-66 336-389 (447)
32 TIGR01979 sufS cysteine desulf 94.8 0.12 2.7E-06 42.3 7.1 57 12-68 278-338 (403)
33 TIGR03531 selenium_SpcS O-phos 94.8 0.057 1.2E-06 45.7 5.1 48 10-57 306-356 (444)
34 TIGR00461 gcvP glycine dehydro 94.5 0.078 1.7E-06 48.7 5.6 51 16-67 329-379 (939)
35 cd00613 GDC-P Glycine cleavage 94.2 0.17 3.8E-06 41.2 6.6 58 11-68 290-347 (398)
36 PRK10874 cysteine sulfinate de 93.9 0.28 6E-06 40.2 7.4 58 11-68 278-335 (401)
37 TIGR03392 FeS_syn_CsdA cystein 93.4 0.4 8.7E-06 39.3 7.4 58 11-68 275-332 (398)
38 PLN02855 Bifunctional selenocy 92.3 0.67 1.4E-05 38.4 7.4 56 13-68 293-354 (424)
39 PRK05367 glycine dehydrogenase 92.2 0.36 7.7E-06 44.7 6.0 54 13-67 338-391 (954)
40 PF02347 GDC-P: Glycine cleava 91.7 0.45 9.8E-06 40.1 5.6 41 12-52 328-368 (429)
41 COG0403 GcvP Glycine cleavage 91.6 0.86 1.9E-05 38.3 7.1 54 15-68 345-399 (450)
42 PRK09295 bifunctional cysteine 91.6 0.95 2.1E-05 37.2 7.5 56 13-68 285-341 (406)
43 COG0520 csdA Selenocysteine ly 90.7 1.5 3.3E-05 36.6 7.9 57 13-69 284-343 (405)
44 PRK12566 glycine dehydrogenase 90.6 0.78 1.7E-05 42.3 6.4 49 18-67 345-393 (954)
45 PLN02414 glycine dehydrogenase 90.4 0.4 8.6E-06 44.5 4.4 49 20-69 373-421 (993)
46 PF00266 Aminotran_5: Aminotra 87.1 3.5 7.5E-05 33.4 7.4 57 13-69 259-319 (371)
47 COG2008 GLY1 Threonine aldolas 85.8 2.3 5E-05 34.8 5.6 50 19-68 242-291 (342)
48 COG1003 GcvP Glycine cleavage 85.4 1.9 4.1E-05 36.6 5.0 44 13-58 329-372 (496)
49 PRK12462 phosphoserine aminotr 84.2 4.2 9.1E-05 33.6 6.6 90 17-106 251-360 (364)
50 cd06502 TA_like Low-specificit 83.0 2.5 5.4E-05 33.4 4.7 56 11-68 230-285 (338)
51 PLN02452 phosphoserine transam 82.2 4.1 8.9E-05 33.6 5.8 55 15-69 251-310 (365)
52 TIGR01976 am_tr_V_VC1184 cyste 82.2 6.7 0.00015 31.9 7.1 42 27-68 292-337 (397)
53 cd00616 AHBA_syn 3-amino-5-hyd 81.5 6.1 0.00013 31.4 6.5 47 22-68 225-276 (352)
54 PRK07269 cystathionine gamma-s 81.4 3.2 7E-05 34.0 4.9 57 10-68 232-289 (364)
55 PRK08247 cystathionine gamma-s 81.0 4.3 9.2E-05 33.2 5.5 54 13-68 235-289 (366)
56 cd06452 SepCysS Sep-tRNA:Cys-t 81.0 8.6 0.00019 31.0 7.3 54 12-67 246-301 (361)
57 COG2873 MET17 O-acetylhomoseri 81.0 3.4 7.3E-05 34.5 4.8 39 22-60 285-323 (426)
58 PLN02414 glycine dehydrogenase 80.9 5.2 0.00011 37.4 6.5 39 12-50 789-827 (993)
59 TIGR01364 serC_1 phosphoserine 80.3 4.8 0.0001 32.8 5.6 56 13-68 234-294 (349)
60 cd06451 AGAT_like Alanine-glyo 79.5 7.2 0.00016 31.2 6.3 53 13-66 243-298 (356)
61 PRK05968 hypothetical protein; 79.4 4.7 0.0001 33.3 5.3 54 13-68 246-311 (389)
62 cd00867 Trans_IPPS Trans-Isopr 79.4 1.9 4.2E-05 32.6 2.8 57 90-150 22-79 (236)
63 PF01053 Cys_Met_Meta_PP: Cys/ 79.0 4.9 0.00011 33.4 5.3 46 12-59 240-285 (386)
64 cd00611 PSAT_like Phosphoserin 78.6 5.4 0.00012 32.4 5.3 56 13-68 242-302 (355)
65 TIGR01814 kynureninase kynuren 77.8 6.7 0.00014 32.3 5.8 53 15-67 295-355 (406)
66 PRK03080 phosphoserine aminotr 75.9 9.1 0.0002 31.3 6.0 53 16-68 258-315 (378)
67 cd00614 CGS_like CGS_like: Cys 75.7 7.6 0.00016 31.7 5.5 45 12-58 223-267 (369)
68 PRK06460 hypothetical protein; 74.1 8.1 0.00018 31.8 5.3 45 13-59 228-272 (376)
69 PRK05355 3-phosphoserine/phosp 73.7 8.3 0.00018 31.5 5.2 56 14-69 246-305 (360)
70 PRK05613 O-acetylhomoserine am 73.5 5.3 0.00012 33.7 4.1 39 21-59 295-333 (437)
71 PRK06767 methionine gamma-lyas 73.2 8.4 0.00018 31.7 5.2 54 12-67 244-308 (386)
72 PRK07812 O-acetylhomoserine am 72.2 5.6 0.00012 33.6 4.0 40 19-58 288-327 (436)
73 TIGR02080 O_succ_thio_ly O-suc 72.2 10 0.00022 31.2 5.5 49 10-60 232-280 (382)
74 PLN02651 cysteine desulfurase 72.0 25 0.00054 28.4 7.7 55 13-68 244-304 (364)
75 PRK06084 O-acetylhomoserine am 71.2 6.6 0.00014 33.0 4.2 41 19-59 279-319 (425)
76 cd00385 Isoprenoid_Biosyn_C1 I 70.9 5.4 0.00012 29.2 3.3 45 81-125 3-49 (243)
77 TIGR03235 DNA_S_dndA cysteine 70.7 25 0.00054 28.1 7.3 51 15-67 248-301 (353)
78 PRK08861 cystathionine gamma-s 69.4 7.5 0.00016 32.3 4.1 46 13-60 237-282 (388)
79 PLN02721 threonine aldolase 69.0 28 0.0006 27.6 7.2 39 30-68 259-298 (353)
80 PRK08248 O-acetylhomoserine am 68.5 7.3 0.00016 32.8 3.9 41 20-60 285-325 (431)
81 PRK05994 O-acetylhomoserine am 68.4 8.7 0.00019 32.2 4.3 41 19-59 283-323 (427)
82 TIGR01328 met_gam_lyase methio 68.3 11 0.00023 31.2 4.8 47 11-59 242-288 (391)
83 TIGR01324 cysta_beta_ly_B cyst 68.3 13 0.00029 30.6 5.3 46 12-59 232-277 (377)
84 PRK09028 cystathionine beta-ly 67.6 8.4 0.00018 32.1 4.0 46 11-58 242-287 (394)
85 PRK05967 cystathionine beta-ly 67.3 9.4 0.0002 31.9 4.3 44 13-58 247-290 (395)
86 PRK06702 O-acetylhomoserine am 67.1 8.8 0.00019 32.4 4.1 44 13-58 277-320 (432)
87 COG0626 MetC Cystathionine bet 66.9 11 0.00025 31.5 4.6 43 14-58 250-292 (396)
88 PLN02409 serine--glyoxylate am 66.6 27 0.00058 28.8 6.9 54 14-68 258-315 (401)
89 PRK07503 methionine gamma-lyas 66.6 12 0.00027 31.0 4.9 47 11-59 248-294 (403)
90 PRK08114 cystathionine beta-ly 65.6 8.9 0.00019 32.0 3.8 45 13-59 247-291 (395)
91 PLN02509 cystathionine beta-ly 65.3 15 0.00033 31.3 5.2 47 11-59 314-360 (464)
92 PRK08133 O-succinylhomoserine 65.2 17 0.00036 30.0 5.4 46 13-60 244-289 (390)
93 TIGR03301 PhnW-AepZ 2-aminoeth 64.2 27 0.00058 27.6 6.3 53 15-68 244-300 (355)
94 PRK08776 cystathionine gamma-s 63.9 18 0.00039 30.1 5.4 46 11-58 242-287 (405)
95 PRK08045 cystathionine gamma-s 62.9 14 0.0003 30.6 4.5 47 12-60 235-281 (386)
96 PRK05939 hypothetical protein; 62.5 10 0.00022 31.5 3.6 38 21-58 257-294 (397)
97 PRK06434 cystathionine gamma-l 61.4 13 0.00028 30.9 4.0 47 11-59 243-289 (384)
98 PRK06176 cystathionine gamma-s 60.9 20 0.00043 29.6 5.0 45 14-60 234-278 (380)
99 TIGR01365 serC_2 phosphoserine 60.6 26 0.00056 29.0 5.7 45 24-68 257-306 (374)
100 TIGR02326 transamin_PhnW 2-ami 60.4 41 0.00088 27.0 6.7 55 13-68 247-305 (363)
101 PRK08249 cystathionine gamma-s 59.9 21 0.00046 29.6 5.1 48 11-60 245-292 (398)
102 PRK07582 cystathionine gamma-l 59.5 17 0.00036 29.8 4.3 45 12-58 230-274 (366)
103 TIGR03403 nifS_epsilon cystein 59.2 65 0.0014 26.0 7.8 52 15-67 246-300 (382)
104 PRK07811 cystathionine gamma-s 58.8 20 0.00043 29.6 4.7 46 12-59 244-289 (388)
105 PLN02724 Molybdenum cofactor s 58.6 34 0.00073 31.3 6.5 57 13-69 324-394 (805)
106 PRK13479 2-aminoethylphosphona 58.0 41 0.00088 27.0 6.4 54 14-68 249-306 (368)
107 PRK07504 O-succinylhomoserine 57.6 20 0.00044 29.7 4.6 47 11-59 247-293 (398)
108 PRK07671 cystathionine beta-ly 57.5 21 0.00046 29.3 4.7 46 13-60 233-278 (377)
109 PRK09331 Sep-tRNA:Cys-tRNA syn 56.7 58 0.0013 26.6 7.1 39 29-67 280-320 (387)
110 PRK08574 cystathionine gamma-s 56.5 17 0.00038 29.9 4.0 46 13-60 236-281 (385)
111 TIGR01325 O_suc_HS_sulf O-succ 56.3 21 0.00045 29.3 4.4 45 13-59 237-281 (380)
112 COG0075 Serine-pyruvate aminot 56.3 49 0.0011 27.7 6.5 54 14-68 250-306 (383)
113 PRK07050 cystathionine beta-ly 56.2 14 0.00031 30.5 3.5 46 12-59 248-293 (394)
114 PRK08134 O-acetylhomoserine am 55.6 17 0.00037 30.6 3.9 38 22-59 287-324 (433)
115 PTZ00094 serine hydroxymethylt 53.9 45 0.00099 28.0 6.2 54 14-68 288-344 (452)
116 PF05889 SLA_LP_auto_ag: Solub 53.7 33 0.00072 28.7 5.2 36 12-47 258-293 (389)
117 KOG2040|consensus 53.7 15 0.00033 33.0 3.3 50 15-66 803-852 (1001)
118 PLN03226 serine hydroxymethylt 53.4 45 0.00097 28.5 6.1 54 14-68 299-353 (475)
119 TIGR02006 IscS cysteine desulf 51.8 80 0.0017 25.9 7.2 52 17-69 252-308 (402)
120 PRK07810 O-succinylhomoserine 51.7 28 0.0006 29.0 4.5 45 11-57 252-296 (403)
121 KOG2862|consensus 51.4 37 0.0008 27.9 4.9 40 15-55 268-307 (385)
122 PRK07049 methionine gamma-lyas 48.8 31 0.00067 28.9 4.4 45 11-57 276-320 (427)
123 TIGR01326 OAH_OAS_sulfhy OAH/O 47.0 30 0.00065 28.8 4.0 40 20-59 277-316 (418)
124 TIGR02539 SepCysS Sep-tRNA:Cys 46.3 1.1E+02 0.0024 24.8 7.2 53 14-67 252-307 (370)
125 PRK00011 glyA serine hydroxyme 45.6 1E+02 0.0023 25.2 7.0 51 17-68 271-322 (416)
126 cd00609 AAT_like Aspartate ami 45.0 81 0.0018 24.5 6.1 54 14-68 245-298 (350)
127 PF13250 DUF4041: Domain of un 44.5 61 0.0013 19.3 4.0 40 96-135 2-43 (56)
128 PRK06234 methionine gamma-lyas 43.7 45 0.00098 27.6 4.6 46 12-59 250-295 (400)
129 PF01276 OKR_DC_1: Orn/Lys/Arg 42.4 66 0.0014 27.2 5.3 49 20-69 289-342 (417)
130 PRK08064 cystathionine beta-ly 42.2 44 0.00095 27.6 4.2 45 13-59 237-281 (390)
131 TIGR03402 FeS_nifS cysteine de 41.4 1.1E+02 0.0023 24.7 6.3 44 24-67 250-297 (379)
132 PRK01688 histidinol-phosphate 41.0 61 0.0013 26.1 4.9 44 24-67 261-304 (351)
133 PF12069 DUF3549: Protein of u 39.5 41 0.00089 27.7 3.5 33 16-48 161-195 (340)
134 PRK12566 glycine dehydrogenase 39.0 54 0.0012 30.8 4.6 42 12-56 759-800 (954)
135 PF15051 FAM198: FAM198 protei 35.1 59 0.0013 26.4 3.7 31 23-54 293-323 (326)
136 TIGR01329 cysta_beta_ly_E cyst 35.0 54 0.0012 26.9 3.7 39 21-59 236-274 (378)
137 cd00686 Terpene_cyclase_cis_tr 34.0 91 0.002 25.8 4.7 22 129-150 114-135 (357)
138 TIGR02618 tyr_phenol_ly tyrosi 33.6 67 0.0015 27.5 4.1 37 29-66 309-345 (450)
139 TIGR01366 serC_3 phosphoserine 32.7 1.3E+02 0.0029 24.4 5.6 42 14-55 245-287 (361)
140 cd00378 SHMT Serine-glycine hy 32.2 2.4E+02 0.0051 22.8 7.1 42 26-68 276-318 (402)
141 smart00592 BRK domain in trans 31.8 35 0.00076 19.4 1.5 17 38-54 25-41 (45)
142 PF00464 SHMT: Serine hydroxym 30.7 1.1E+02 0.0024 25.8 4.8 41 14-55 285-325 (399)
143 PF06330 TRI5: Trichodiene syn 30.3 1.3E+02 0.0027 25.2 5.0 60 85-153 79-138 (376)
144 PF07533 BRK: BRK domain; Int 30.1 35 0.00075 19.5 1.3 16 39-54 28-43 (46)
145 COG4170 SapD ABC-type antimicr 30.1 24 0.00052 27.6 0.8 35 120-154 220-266 (330)
146 KOG2040|consensus 29.9 62 0.0014 29.4 3.3 47 21-68 387-433 (1001)
147 COG4389 Site-specific recombin 29.9 76 0.0017 27.6 3.7 33 12-49 626-658 (677)
148 PF05697 Trigger_N: Bacterial 28.0 2.1E+02 0.0046 19.9 7.1 58 3-64 40-97 (145)
149 COG3382 Solo B3/4 domain (OB-f 27.6 2E+02 0.0044 22.3 5.4 27 121-147 62-88 (229)
150 TIGR01141 hisC histidinol-phos 26.7 2.9E+02 0.0063 21.7 6.6 41 26-67 258-298 (346)
151 PLN02271 serine hydroxymethylt 25.9 1.6E+02 0.0035 26.2 5.1 42 14-56 420-461 (586)
152 COG1932 SerC Phosphoserine ami 25.4 1.2E+02 0.0027 25.2 4.1 46 24-69 262-310 (365)
153 PF06754 PhnG: Phosphonate met 25.4 1.7E+02 0.0037 20.9 4.5 40 30-69 12-51 (146)
154 COG4293 Uncharacterized protei 25.3 2.1E+02 0.0046 20.9 4.9 63 1-69 71-133 (184)
155 PRK13034 serine hydroxymethylt 25.3 2.3E+02 0.005 23.5 5.9 41 27-68 284-325 (416)
156 KOG1459|consensus 23.8 2.3E+02 0.005 23.8 5.3 60 76-135 139-198 (413)
157 COG3844 Kynureninase [Amino ac 23.5 78 0.0017 26.3 2.6 64 14-77 291-361 (407)
158 KOG2200|consensus 23.3 39 0.00084 29.9 0.9 78 24-107 347-440 (674)
159 PLN02822 serine palmitoyltrans 23.0 3.4E+02 0.0073 23.2 6.6 41 28-68 367-407 (481)
160 KOG2790|consensus 22.9 1.4E+02 0.003 24.4 3.8 44 26-69 268-315 (370)
161 PLN02242 methionine gamma-lyas 22.5 1.4E+02 0.0031 24.9 4.2 42 11-55 262-303 (418)
162 PLN00010 cyclin-dependent kina 22.2 87 0.0019 20.4 2.2 25 44-68 45-71 (86)
163 PRK05958 8-amino-7-oxononanoat 21.6 2.5E+02 0.0054 22.3 5.3 49 15-67 279-327 (385)
164 PRK14012 cysteine desulfurase; 21.5 3.9E+02 0.0084 21.8 6.5 45 24-68 260-309 (404)
165 COG0112 GlyA Glycine/serine hy 21.3 1.8E+02 0.0039 24.6 4.4 48 17-65 272-322 (413)
166 KOG0056|consensus 21.0 2.7E+02 0.0059 24.8 5.5 58 13-74 486-555 (790)
167 PTZ00453 cyclin-dependent kina 20.8 94 0.002 20.7 2.1 24 44-67 69-94 (96)
168 COG1982 LdcC Arginine/lysine/o 20.5 2.2E+02 0.0049 25.1 5.0 40 19-58 283-322 (557)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=99.84 E-value=4.1e-21 Score=163.18 Aligned_cols=69 Identities=54% Similarity=0.973 Sum_probs=67.3
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
||++||||||||||+|++|+.+|.+||+++|+++|++|++|++.|+++|+||++.+|++++|||||.|+
T Consensus 400 d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~ 468 (539)
T PLN02590 400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPV 468 (539)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999884
No 2
>KOG0629|consensus
Probab=99.82 E-value=2.3e-20 Score=151.63 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=121.9
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc--cceeeEEEEeccccccccccch
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE--VLMGLVCFRLKTAKVGLRKFDY 78 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~--p~l~~v~Fr~~~~~~~~~~~~~ 78 (154)
|+++||+|+.|.+|+|++||+-|.+||++.|++++++|+||.+.|++.++|+++.+ |+..+|||+|.|+..+.-..+.
T Consensus 366 dK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~~ 445 (510)
T KOG0629|consen 366 DKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQENP 445 (510)
T ss_pred cchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCcccc
Confidence 68999999999999999999999999999999999999999999999999999887 8999999999998766556678
Q ss_pred hhhhhhhcCchhhhhHHHHHHHHHhhhhhhccc-------CCChHHHHHHHHHHHHHHHHHhCC
Q psy9810 79 ENFLCTLLLPKALQNASFVIRAFNIEVAKVQDN-------VSDVTTGQARLTFWDNAIDKLYTD 135 (154)
Q Consensus 79 ~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~-------~~~p~~~~~rL~~w~~~i~~~~~g 135 (154)
+++.+...+-+.++..+..-+..++.+....+. .++|.+....+++..|+|+++.+.
T Consensus 446 e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 446 ERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred hhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 888888888889999999999999999876653 357889999999999999998764
No 3
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.77 E-value=5.1e-19 Score=144.90 Aligned_cols=67 Identities=42% Similarity=0.723 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
++++||||++++||+|++|+.+|++||+++|++++++|++|++.|+++|+||++++|++++|||||+
T Consensus 307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 4789999999999999999999999999999999999999999999999999999999999999995
No 4
>PLN02880 tyrosine decarboxylase
Probab=99.74 E-value=4.7e-18 Score=143.56 Aligned_cols=69 Identities=68% Similarity=1.155 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
++++|+|||++|||+|++|+.+|.+||+++|++++++|+++++.|+++|+||++.+|++++||||+.|.
T Consensus 352 ~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~ 420 (490)
T PLN02880 352 DWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPP 420 (490)
T ss_pred ccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999874
No 5
>KOG0628|consensus
Probab=99.67 E-value=8.3e-17 Score=131.98 Aligned_cols=87 Identities=59% Similarity=1.039 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecccccc----cccc
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVG----LRKF 76 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~~~----~~~~ 76 (154)
+|+|.++|||||||+|++++.+|.+++++.|++.++||+.|.+.+.++|.||+++++.+.+||||.++.++. ++++
T Consensus 346 hwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~i 425 (511)
T KOG0628|consen 346 HWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNRL 425 (511)
T ss_pred ccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999998654 4455
Q ss_pred chhhhhhhhcCch
Q psy9810 77 DYENFLCTLLLPK 89 (154)
Q Consensus 77 ~~~~~l~~~~lp~ 89 (154)
+.++ .++++|.
T Consensus 426 n~~g--~i~l~~~ 436 (511)
T KOG0628|consen 426 NSSG--RIHLVPA 436 (511)
T ss_pred HhcC--cEEEEEe
Confidence 5554 3444444
No 6
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.65 E-value=2.6e-16 Score=133.75 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecccc
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAK 70 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~ 70 (154)
++++|+||+++++|+|++|+.+|.+||++++++++++|++|++.|+++|+||++.+|++++|||||.|..
T Consensus 372 ~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~ 441 (522)
T TIGR03799 372 SHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEE 441 (522)
T ss_pred cceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChh
Confidence 3689999999999999999999999999999999999999999999999999999999999999998853
No 7
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=99.50 E-value=7.8e-14 Score=109.30 Aligned_cols=83 Identities=27% Similarity=0.358 Sum_probs=77.0
Q ss_pred cccccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCCh-HHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q psy9810 72 GLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDV-TTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVI 150 (154)
Q Consensus 72 ~~~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p-~~~~~rL~~w~~~i~~~~~g~~~~~p~~~aL~~~~ 150 (154)
.+++.++++|+++.++|+..|.+++++|+||++++++.|.++.| ..+.++|+||++.+++.++|..+.||++.+|.+++
T Consensus 6 ~~~~~~~sf~~a~~~lp~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~pv~~al~~~~ 85 (265)
T cd00683 6 ILRKGSRSFYLASRLLPPELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGGAPTHPVLRALADLA 85 (265)
T ss_pred HHHHhCCcHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 45678899999999999999999999999999999999998877 89999999999999999998889999999999999
Q ss_pred HhhC
Q psy9810 151 SIVG 154 (154)
Q Consensus 151 ~~~~ 154 (154)
++++
T Consensus 86 ~~~~ 89 (265)
T cd00683 86 RRYG 89 (265)
T ss_pred HHcC
Confidence 8764
No 8
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.50 E-value=4.5e-14 Score=121.70 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=63.6
Q ss_pred CCCCCCCC-CCchHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhc------CCCeEE--EcccceeeEEEEecccc
Q psy9810 2 WQIPLGRR-FRSLKLWFVLRLL--GVKYLQEYIRKQISLAKEFEQLVRS------DDRFEV--IYEVLMGLVCFRLKTAK 70 (154)
Q Consensus 2 ~~~~~sR~-~~alk~w~~l~~~--G~~g~~~~i~~~~~~a~~~~~~i~~------~~~~el--~~~p~l~~v~Fr~~~~~ 70 (154)
+++++||. ++|+|+|++++.+ |.+||+++|++++++|++|++.|++ +|+||+ +.+|++|+|||||.|..
T Consensus 426 ~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g 505 (608)
T TIGR03811 426 YILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKG 505 (608)
T ss_pred cceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCC
Confidence 57889984 8899999999999 9999999999999999999999998 688898 89999999999998763
No 9
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.46 E-value=1.6e-13 Score=114.50 Aligned_cols=68 Identities=18% Similarity=0.358 Sum_probs=64.5
Q ss_pred CCCCCCCCC-CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-cceeeEEEEeccc
Q psy9810 2 WQIPLGRRF-RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE-VLMGLVCFRLKTA 69 (154)
Q Consensus 2 ~~~~~sR~~-~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-p~l~~v~Fr~~~~ 69 (154)
.++++||++ +++|+|++|+.+|.+||++++++++++|++|++.|++.|+||++.+ |.+++||||+.+.
T Consensus 298 ~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~ 367 (431)
T TIGR01788 298 FTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDD 367 (431)
T ss_pred cceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCC
Confidence 578999997 8999999999999999999999999999999999999999999998 8999999999863
No 10
>PLN03032 serine decarboxylase; Provisional
Probab=99.46 E-value=1.5e-13 Score=112.73 Aligned_cols=103 Identities=16% Similarity=0.251 Sum_probs=80.5
Q ss_pred CCCCCCCCC-CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecccccccccc--c
Q psy9810 1 HWQIPLGRR-FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKF--D 77 (154)
Q Consensus 1 ~~~~~~sR~-~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~~~~~~~--~ 77 (154)
|+++++||+ ++++|+|++|+.+|.+||++++++++++|+++++.|++. +++++..|.+++|||+....+...+.. +
T Consensus 266 d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~~~~~~~w~l~ 344 (374)
T PLN03032 266 DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMDEAFIKKWQLA 344 (374)
T ss_pred CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCcHhHhheeeec
Confidence 468999995 799999999999999999999999999999999999985 899999999999999987644322211 1
Q ss_pred h-hhhhhhhcCchhhhhHHHHHHHHHhhhhh
Q psy9810 78 Y-ENFLCTLLLPKALQNASFVIRAFNIEVAK 107 (154)
Q Consensus 78 ~-~~~l~~~~lp~~~r~~~~al~a~~~~~~~ 107 (154)
. ..++-+..+|+.+++ .+..|+..+..
T Consensus 345 ~~~~~~hi~vm~~~~~~---~id~fi~dl~~ 372 (374)
T PLN03032 345 CEGDIAHVVVMPNVTVE---KLDEFVEELVE 372 (374)
T ss_pred ccCCEEEEEECCCCCHH---HHHHHHHHHhc
Confidence 1 013445677777765 67777665543
No 11
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=99.45 E-value=3.5e-13 Score=105.80 Aligned_cols=79 Identities=30% Similarity=0.460 Sum_probs=73.5
Q ss_pred ccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhC
Q psy9810 75 KFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG 154 (154)
Q Consensus 75 ~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~g~~~~~p~~~aL~~~~~~~~ 154 (154)
..++++|+++.++|+..|.+++++|+||++++++.|.+.+|..++++|+||++.+++++.|. +.||++.+|.+++++++
T Consensus 3 ~~s~sF~~a~~~lp~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~g~-~~~pv~~al~~~~~~~~ 81 (266)
T TIGR03465 3 ASGSSFYYGMRLLPPERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLYAGA-PSHPVARALADPARRFD 81 (266)
T ss_pred CCcCcHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHcC
Confidence 45678899999999999999999999999999999998899999999999999999999985 68999999999998764
No 12
>PLN02632 phytoene synthase
Probab=99.41 E-value=6.4e-13 Score=107.55 Aligned_cols=82 Identities=17% Similarity=0.274 Sum_probs=76.6
Q ss_pred cccccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Q psy9810 72 GLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVIS 151 (154)
Q Consensus 72 ~~~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~g~~~~~p~~~aL~~~~~ 151 (154)
.++..++++|+++.++|+..|.+++++|+||+++++|.|.+++|..+.++|+||++.+++++.|. +.||+..+|.++++
T Consensus 55 i~r~~s~sFyla~~lLP~~~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~-~~~pv~~aL~~~~~ 133 (334)
T PLN02632 55 VCAEYAKTFYLGTLLMTPERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFDGR-PYDMLDAALADTVS 133 (334)
T ss_pred HHhhcCchHHHHHHhCCHHHHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999989899999999999999999984 58999999999998
Q ss_pred hhC
Q psy9810 152 IVG 154 (154)
Q Consensus 152 ~~~ 154 (154)
+++
T Consensus 134 ~~~ 136 (334)
T PLN02632 134 KFP 136 (334)
T ss_pred HCC
Confidence 864
No 13
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.41 E-value=4e-13 Score=112.74 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=63.3
Q ss_pred CCCCCCCCC-CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 2 WQIPLGRRF-RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 2 ~~~~~sR~~-~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
+++.+||.. +++|+|++|+.+|++||++++++++++|+++++.|++.+.||++++|++|+||||+++.
T Consensus 314 ~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~ 382 (460)
T COG0076 314 FTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDD 382 (460)
T ss_pred eeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCc
Confidence 456677877 99999999999999999999999999999999999999899999999999999999553
No 14
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=99.38 E-value=1.7e-13 Score=107.23 Aligned_cols=80 Identities=33% Similarity=0.592 Sum_probs=72.1
Q ss_pred cccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhC-----CCCCCChHHHHHHH
Q psy9810 74 RKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYT-----DQVPAHPVVQELNK 148 (154)
Q Consensus 74 ~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~-----g~~~~~p~~~aL~~ 148 (154)
++.++++|+++.++|+..|..++++|+||++++++.|.+++|..++++|+||++.++.+++ ++.+.||++.+|.+
T Consensus 2 r~~~~sf~~a~~~lP~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~ 81 (267)
T PF00494_consen 2 RKHSRSFYLASLLLPKEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALAD 81 (267)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHH
T ss_pred CCCCccHHHHHHHCCHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999993 44689999999999
Q ss_pred HHHhh
Q psy9810 149 VISIV 153 (154)
Q Consensus 149 ~~~~~ 153 (154)
+++++
T Consensus 82 ~~~~~ 86 (267)
T PF00494_consen 82 LVRRY 86 (267)
T ss_dssp HHCCS
T ss_pred HHHHH
Confidence 98764
No 15
>PLN02263 serine decarboxylase
Probab=99.37 E-value=2e-12 Score=108.42 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=61.5
Q ss_pred CCCCCCCCCC-CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 1 HWQIPLGRRF-RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 1 ~~~~~~sR~~-~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
|.++++||++ ++||+|++|+.+|.+||+++|++++++|+++++.|++. +++++.+|.+++|||+...
T Consensus 333 d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~ 400 (470)
T PLN02263 333 DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK 400 (470)
T ss_pred CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc
Confidence 4589999998 58999999999999999999999999999999999987 7888889999999999544
No 16
>KOG4411|consensus
Probab=99.37 E-value=2.1e-12 Score=97.94 Aligned_cols=80 Identities=38% Similarity=0.753 Sum_probs=72.3
Q ss_pred cccccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhh-cccCCChHHHHHHHHHHHHHHHHHhCCCC---CCChHHHHHH
Q psy9810 72 GLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKV-QDNVSDVTTGQARLTFWDNAIDKLYTDQV---PAHPVVQELN 147 (154)
Q Consensus 72 ~~~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i-~d~~~~p~~~~~rL~~w~~~i~~~~~g~~---~~~p~~~aL~ 147 (154)
.++..++..|++...+|.+.|.+.+++++|++++..+ .|...+|.++.+||+||.|.|+.+|.-.+ ++||++++|.
T Consensus 17 ~vr~ydy~~ylc~l~lp~e~r~aafaLrAfNVE~ar~~~d~~~~p~ia~mRL~fW~daIdk~y~~~p~~v~~qPva~aL~ 96 (292)
T KOG4411|consen 17 QVRNYDYHHYLCLLELPTEMRKAAFALRAFNVELARIKVDTRKGPAIAMMRLQFWKDAIDKIYGISPLPVPRQPVAIALC 96 (292)
T ss_pred HHHhhhHHHHHHHHhCcHHHHHHHHHHHHhhHHHHHHhhccccCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcHHHHHHH
Confidence 4678889999999999999999999999999999995 46667999999999999999999998655 8999999999
Q ss_pred HHHH
Q psy9810 148 KVIS 151 (154)
Q Consensus 148 ~~~~ 151 (154)
.++.
T Consensus 97 ~~~~ 100 (292)
T KOG4411|consen 97 SFAA 100 (292)
T ss_pred HHHh
Confidence 8774
No 17
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=99.36 E-value=3.5e-12 Score=100.22 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=69.7
Q ss_pred cchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccC-CChHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhC
Q psy9810 76 FDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNV-SDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIVG 154 (154)
Q Consensus 76 ~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~-~~p~~~~~rL~~w~~~i~~~~~g~~~~~p~~~aL~~~~~~~~ 154 (154)
+.+++++++.++|+..|.+++++|+||+..+++.|++ .++..+.++|+||++.+++.++|. ++||+..+|.+++++++
T Consensus 4 ~~~sf~~a~~~lp~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g~-~~~pv~~aL~~~~~~~~ 82 (266)
T TIGR03464 4 HYENFPVASLLLPARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSGE-PAAPVFVALARTVQRHG 82 (266)
T ss_pred ccCcHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCCC-CCChHHHHHHHHHHHcC
Confidence 4456667999999999999999999999999999986 567788999999999999999985 59999999999998865
No 18
>PRK02769 histidine decarboxylase; Provisional
Probab=99.23 E-value=3.2e-11 Score=99.22 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCCCCCCC-CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecccccccccc--c
Q psy9810 1 HWQIPLGRR-FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKF--D 77 (154)
Q Consensus 1 ~~~~~~sR~-~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~~~~~~~--~ 77 (154)
|+++++||. +.++++|++|+.+|.+||++++++++++|+++.+.|++ .+++++.+|.+++|||+...+.. .+.. +
T Consensus 263 d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~-~g~~~~~~p~~~~v~f~~~~~~~-~~~w~l~ 340 (380)
T PRK02769 263 DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA-NGIPAWRNPNSITVVFPCPSERI-WKKWHLA 340 (380)
T ss_pred CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCceEEEEcCCCHHH-HhCeeEc
Confidence 457899995 78999999999999999999999999999999999987 59999999999999998765432 2211 1
Q ss_pred h-hhhhhhhcCchhhhhHHHHHHHHHhhhhhh
Q psy9810 78 Y-ENFLCTLLLPKALQNASFVIRAFNIEVAKV 108 (154)
Q Consensus 78 ~-~~~l~~~~lp~~~r~~~~al~a~~~~~~~i 108 (154)
. ..++-+..+|+.+++ .+..|+.++...
T Consensus 341 ~~~~~~hi~~~~~~~~~---~~~~f~~dl~~~ 369 (380)
T PRK02769 341 TSGNQAHIITMPHHNKQ---QIDSLIDELIFD 369 (380)
T ss_pred ccCCEEEEEECCCCCHH---HHHHHHHHHHHH
Confidence 1 113456677887776 446666555443
No 19
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=99.06 E-value=5.3e-10 Score=88.82 Aligned_cols=82 Identities=29% Similarity=0.393 Sum_probs=69.3
Q ss_pred cccccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCCh-HHHHHHHHHHHHHHHHHhCCC-CCCChHHHHHHHH
Q psy9810 72 GLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDV-TTGQARLTFWDNAIDKLYTDQ-VPAHPVVQELNKV 149 (154)
Q Consensus 72 ~~~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p-~~~~~rL~~w~~~i~~~~~g~-~~~~p~~~aL~~~ 149 (154)
.+++.++++|+++.++|+.+|++.+++|+||++++++.|.+++| ...+.+++||++.... +.|. .++||+..+|.++
T Consensus 16 i~~~~srtf~la~~~lp~~~R~av~alYa~~R~~Ddv~D~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~pv~~al~~~ 94 (288)
T COG1562 16 ILRETSRTFYLAILLLPPEKREAVWALYAFCREADDVVDGVSDPDLPAEILLAWRRELDGD-FSGQPASDHPVLAALVEV 94 (288)
T ss_pred HHHHhCcchHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhcc-ccCCCcccCHHHHHHHHH
Confidence 36677899999999999999999999999999999999999999 6666666666665554 3443 4799999999999
Q ss_pred HHhhC
Q psy9810 150 ISIVG 154 (154)
Q Consensus 150 ~~~~~ 154 (154)
+++++
T Consensus 95 ~~~~~ 99 (288)
T COG1562 95 ARRFG 99 (288)
T ss_pred HHHcC
Confidence 98875
No 20
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.23 E-value=5.6e-06 Score=66.33 Aligned_cols=57 Identities=44% Similarity=0.701 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
++++|++++.+|.+|+++++++..++++++.+.|++.++++++.+|+.++++|++.+
T Consensus 231 ~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~ 287 (345)
T cd06450 231 ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP 287 (345)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECC
Confidence 788999999999999999999999999999999999999999988999999999876
No 21
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.78 E-value=4.4e-05 Score=69.19 Aligned_cols=63 Identities=11% Similarity=0.196 Sum_probs=53.9
Q ss_pred CCCCCCCCc----hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc----ceeeEEEEecc
Q psy9810 4 IPLGRRFRS----LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV----LMGLVCFRLKT 68 (154)
Q Consensus 4 ~~~sR~~~a----lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p----~l~~v~Fr~~~ 68 (154)
...++.+.+ ++.|+.++.+|.+|++++.+.++.+|.|+++.|++ +++++.+. -.+-+||++++
T Consensus 737 a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~ 807 (939)
T TIGR00461 737 SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRP 807 (939)
T ss_pred cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccc
Confidence 345677888 99999999999999999999999999999999987 56887763 34559999986
No 22
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=97.72 E-value=8e-05 Score=60.59 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=48.1
Q ss_pred ccccchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhC
Q psy9810 73 LRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYT 134 (154)
Q Consensus 73 ~~~~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~ 134 (154)
++..++++|+++.++|+..|.+++++|+||+.+|++.|+.+.|. +.++.+|++-.+.++.
T Consensus 9 l~~~SrSF~~ai~~Lp~~lR~aV~~~Yl~cR~~DdIeDd~~~~~--~~kl~~l~~~~~~l~~ 68 (336)
T TIGR01559 9 LNLTSRSFAAVIQELPPELRNAVCIFYLVLRALDTVEDDMTISV--DKKIPLLRDFHEKIYD 68 (336)
T ss_pred HhhcCccHHHHHHHcCHHHHHHHHHHHHHHHhccccccCCCCCH--HHHHHHHHHHHHHHhc
Confidence 55677899999999999999999999999999999999766543 4566666655555554
No 23
>KOG1383|consensus
Probab=97.31 E-value=0.00068 Score=56.78 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=57.8
Q ss_pred CCCCCCCC-CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 3 QIPLGRRF-RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 3 ~~~~sR~~-~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
++..||+. -...-|++|..+|.+||.+.-+++++.|+.+.+.|++.+++.++.+|..+++.|-...
T Consensus 327 TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~ 393 (491)
T KOG1383|consen 327 TLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND 393 (491)
T ss_pred ccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc
Confidence 45667754 3556799999999999999999999999999999999999999999999998886544
No 24
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=97.24 E-value=0.00065 Score=55.01 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=54.3
Q ss_pred CCCC-CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 6 LGRR-FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 6 ~sR~-~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
+||. ...+.+|++++.++.+|+.+.+++..++++++.+.|++. +++.+.+|..|+|+|+..+.
T Consensus 264 gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~ 327 (373)
T TIGR03812 264 GTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDDP 327 (373)
T ss_pred eechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCCH
Confidence 4553 568899999999999999999999999999999999987 67766778899999987653
No 25
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=97.24 E-value=0.00068 Score=54.77 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCCC-CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecccc
Q psy9810 6 LGRR-FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAK 70 (154)
Q Consensus 6 ~sR~-~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~~ 70 (154)
+||. ..++.+|.+|+.++.+|+++.+++..++++++.+.|++. +++++.+|..++++|.+.+..
T Consensus 259 gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~~ 323 (371)
T PRK13520 259 GTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPNPD 323 (371)
T ss_pred eeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCCHH
Confidence 3443 457899999999999999999999999999999999987 899777888999999886433
No 26
>KOG0630|consensus
Probab=96.60 E-value=0.0033 Score=53.54 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=47.7
Q ss_pred CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy9810 6 LGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY 55 (154)
Q Consensus 6 ~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~ 55 (154)
++|+.++|.+|.+++++|.+.+.++|+..+.+...+.+.....|+.|++.
T Consensus 391 ~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig 440 (838)
T KOG0630|consen 391 LREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIG 440 (838)
T ss_pred HHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEec
Confidence 57899999999999999999999999999999999999999999999876
No 27
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=96.32 E-value=0.018 Score=49.01 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-cceeeEEEE
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE-VLMGLVCFR 65 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-p~l~~v~Fr 65 (154)
++.|+.+..+|.+|++++.++++.+|++|.+.|++. +++..+ |..+.++|.
T Consensus 333 ~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~ 384 (481)
T PRK04366 333 VRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLS 384 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEE
Confidence 899999999999999999999999999999999987 555432 333444444
No 28
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.73 E-value=0.04 Score=44.56 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc--ceeeEEEEecc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV--LMGLVCFRLKT 68 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p--~l~~v~Fr~~~ 68 (154)
.+.+|.+++.++..|+++++++..++++++.+.++++|+++++.++ ..++++|+...
T Consensus 258 ~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (373)
T cd06453 258 AIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEG 316 (373)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECC
Confidence 5788999999999999999999999999999999999999988543 46788888743
No 29
>PRK05367 glycine dehydrogenase; Provisional
Probab=95.63 E-value=0.03 Score=51.51 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc----cceeeEEEEecc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE----VLMGLVCFRLKT 68 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~----p~l~~v~Fr~~~ 68 (154)
.+++.|+.++.+|.+|++++.+.++.+|+|+++.|+++ +++... +..+=++|.+.+
T Consensus 756 ~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~ 815 (954)
T PRK05367 756 ILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRP 815 (954)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeec
Confidence 56779999999999999999999999999999999875 554332 335556676653
No 30
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=94.99 E-value=0.11 Score=41.95 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc----ceeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV----LMGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p----~l~~v~Fr~~~ 68 (154)
+.++.+++.+...|++++.++..++++++.+.+++.++++++.++ ..++++|+..+
T Consensus 254 ~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~ 313 (376)
T TIGR01977 254 AGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEG 313 (376)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECC
Confidence 667889999999999999999999999999999999999998642 36789998753
No 31
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=94.85 E-value=0.13 Score=43.04 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEe
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRL 66 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~ 66 (154)
+..++.++.+|.+|++++.++..++++++.+.|++.+++++...+.++.+|+++
T Consensus 336 ~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~ 389 (447)
T PRK00451 336 LAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRL 389 (447)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEec
Confidence 556667888999999999999999999999999999999987555566667776
No 32
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=94.83 E-value=0.12 Score=42.29 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc----eeeEEEEecc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL----MGLVCFRLKT 68 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~----l~~v~Fr~~~ 68 (154)
.+.++.+++.+...|+.+..++..++++++.+.+++.|+++++.++. .++++|++.+
T Consensus 278 ~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~ 338 (403)
T TIGR01979 278 VIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEG 338 (403)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCC
Confidence 36678888888777889999999999999999999999999886542 6799998754
No 33
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=94.80 E-value=0.057 Score=45.67 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEEccc
Q psy9810 10 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD---RFEVIYEV 57 (154)
Q Consensus 10 ~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~---~~el~~~p 57 (154)
..++++|+++..+|.+||++++++..++++++.+.|++.. +..++..|
T Consensus 306 s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~ 356 (444)
T TIGR03531 306 SPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTP 356 (444)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCC
Confidence 4689999999999999999999999999999999987642 56666554
No 34
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=94.54 E-value=0.078 Score=48.65 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=45.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 16 WFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 16 w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
.+-+.++|.+|++++-++...+|.++++.|++ .+++++.+|-++.+.+++.
T Consensus 329 ~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~ 379 (939)
T TIGR00461 329 SSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINKTWFDTLTVKVG 379 (939)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCccceEEEEeC
Confidence 44478899999999999999999999999998 7999999988889888874
No 35
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=94.20 E-value=0.17 Score=41.22 Aligned_cols=58 Identities=14% Similarity=0.072 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
.+...|++++.+|.+|+.++.++..++++++.+.|++.+..+....+..++++|+..+
T Consensus 290 ~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~ 347 (398)
T cd00613 290 LALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPP 347 (398)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCC
Confidence 3457888899999999999999999999999999998876653334566778888754
No 36
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=93.93 E-value=0.28 Score=40.25 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=49.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
..+.+..+++.+...|+.+..++..++++++.+.|++.|+++++.+|..++++|...+
T Consensus 278 ~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~ 335 (401)
T PRK10874 278 GVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAG 335 (401)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECC
Confidence 4567778888888888888888888999999999999999999888888899998743
No 37
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=93.36 E-value=0.4 Score=39.27 Aligned_cols=58 Identities=17% Similarity=0.035 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
..+.+..+++.+-..|+.+..++..++++++.+.+++.|++++..+|..++++|+..+
T Consensus 275 ~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~ 332 (398)
T TIGR03392 275 GVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAG 332 (398)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCC
Confidence 3457778888887788888889999999999999999999998877788899998653
No 38
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=92.35 E-value=0.67 Score=38.42 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc------ceeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV------LMGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p------~l~~v~Fr~~~ 68 (154)
+.+..+++.+-..|+.+..++..++++++.+.|++.|+++++.++ ..++++|....
T Consensus 293 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~ 354 (424)
T PLN02855 293 IGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEG 354 (424)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECC
Confidence 557777887777788999999999999999999999999998643 25799998753
No 39
>PRK05367 glycine dehydrogenase; Provisional
Probab=92.19 E-value=0.36 Score=44.68 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
+..++.+.++|.+|++++-+++..+|.++++.|+. ++++++.++-+++++|+..
T Consensus 338 ~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~ 391 (954)
T PRK05367 338 VMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG 391 (954)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC
Confidence 34444457799999999999999999999999977 7999998888999999974
No 40
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=91.71 E-value=0.45 Score=40.14 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFE 52 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~e 52 (154)
|+..++-+..+|.+|++++-+.++.+|.|+++.|++..++.
T Consensus 328 A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~ 368 (429)
T PF02347_consen 328 ALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLP 368 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBEC
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 45778899999999999999999999999999999873333
No 41
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=91.65 E-value=0.86 Score=38.33 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=46.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEcccceeeEEEEecc
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD-RFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~-~~el~~~p~l~~v~Fr~~~ 68 (154)
.=+.+-++|.+|++++-++...+|.++++.+++.. +++++.+.-++.+++|...
T Consensus 345 As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~ 399 (450)
T COG0403 345 ASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPE 399 (450)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecch
Confidence 33455679999999999999999999999999653 6999988888889998863
No 42
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=91.64 E-value=0.95 Score=37.24 Aligned_cols=56 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc-ceeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV-LMGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p-~l~~v~Fr~~~ 68 (154)
+.+..+++.+-..|+++..++.-.+++++.+.|++.|++++..+. ..++++|....
T Consensus 285 ~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~ 341 (406)
T PRK09295 285 IGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGK 341 (406)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECC
Confidence 567778888877788888888889999999999999999988642 36799998754
No 43
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=1.5 Score=36.63 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc---ceeeEEEEeccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV---LMGLVCFRLKTA 69 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p---~l~~v~Fr~~~~ 69 (154)
+-+=.+++.+-.-|+.++-.+..++++++.+.+++.|++++..++ ..++++|.....
T Consensus 284 i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~ 343 (405)
T COG0520 284 IGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI 343 (405)
T ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC
Confidence 345567888888888899999999999999999999999999987 589999998774
No 44
>PRK12566 glycine dehydrogenase; Provisional
Probab=90.60 E-value=0.78 Score=42.34 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=43.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 18 VLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 18 ~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
-+-++|.+|++++-+++..+|.++++.|++ ++++++.+|-++.+++++.
T Consensus 345 Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~ 393 (954)
T PRK12566 345 YAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVG 393 (954)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEEcc
Confidence 345789999999999999999999999998 7999999987888888873
No 45
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=90.43 E-value=0.4 Score=44.50 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 20 RLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 20 ~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
.++|..|++++-+++..+|.++++.|+. ++++++.+|.+++++|+...+
T Consensus 373 ~~~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~~~ 421 (993)
T PLN02414 373 VYHGPEGLKTIAQRVHGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCSDA 421 (993)
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHhh-cCCccCCCCCcCeEEEecCCH
Confidence 4679999999999999999999999977 689999999899999998543
No 46
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=87.05 E-value=3.5 Score=33.38 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc----ccceeeEEEEeccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY----EVLMGLVCFRLKTA 69 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~----~p~l~~v~Fr~~~~ 69 (154)
+.+-.+++.+-..|+.+..++..++++++.+.|++.|+.+++. +...+++||.+.+.
T Consensus 259 ~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 319 (371)
T PF00266_consen 259 YALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS 319 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS
T ss_pred hhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC
Confidence 3455678888888999999999999999999999999999865 23466899988553
No 47
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=85.82 E-value=2.3 Score=34.84 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=41.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 19 LRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 19 l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
+-++..+.+...-+|.-+||+.|++.+.+.|++++..+|+.|+|-.+...
T Consensus 242 ~~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~ 291 (342)
T COG2008 242 LYALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPE 291 (342)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECCh
Confidence 33455555777778888999999999999999999999999999776654
No 48
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=85.37 E-value=1.9 Score=36.57 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
++.|+-++.+|.+|+++.=+.++-+|.|++.+|+. .|++...+.
T Consensus 329 ~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~ 372 (496)
T COG1003 329 PIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGE 372 (496)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCC
Confidence 57899999999999999999999999999999985 688877664
No 49
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=84.23 E-value=4.2 Score=33.64 Aligned_cols=90 Identities=14% Similarity=0.029 Sum_probs=55.8
Q ss_pred HHHHHHhHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-cccc---eeeEEEEeccccc---c-----------cccc
Q psy9810 17 FVLRLLGVK--YLQEYIRKQISLAKEFEQLVRSDDRFEVI-YEVL---MGLVCFRLKTAKV---G-----------LRKF 76 (154)
Q Consensus 17 ~~l~~~G~~--g~~~~i~~~~~~a~~~~~~i~~~~~~el~-~~p~---l~~v~Fr~~~~~~---~-----------~~~~ 76 (154)
.+|+.+=.+ |+..+.+++.+.|+.+++.|++.++|... ..|+ .-+|||+...+.. . ++-+
T Consensus 251 ~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~l~~~f~~~a~~~gl~~lkGh 330 (364)
T PRK12462 251 LVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPRLDTLFKEQSTEAGFCGLSGH 330 (364)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHHHHHHHHHHHHHCCCccccCC
Confidence 355555556 99999999999999999999999866654 3332 3468999765421 1 1111
Q ss_pred chhhhhhhhcCchhhhhHHHHHHHHHhhhh
Q psy9810 77 DYENFLCTLLLPKALQNASFVIRAFNIEVA 106 (154)
Q Consensus 77 ~~~~~l~~~~lp~~~r~~~~al~a~~~~~~ 106 (154)
...+-++..+.|....++.-+|-.||.+..
T Consensus 331 r~vgg~Ras~yna~~~e~v~~L~~fm~~f~ 360 (364)
T PRK12462 331 RSIGGIRASLYNAVSEQAVSRLCAFLKDFA 360 (364)
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 111223334445555566666666666554
No 50
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=82.98 E-value=2.5 Score=33.44 Aligned_cols=56 Identities=13% Similarity=0.001 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
.++-.++.+..+...++.+.+++..++++++.+.+++. ++. +.++..|++++++..
T Consensus 230 ~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~v~~~~ 285 (338)
T cd06502 230 SGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALEEL-GGL-ESEVQTNIVLLDPVE 285 (338)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccCCeEEEecCC
Confidence 34555667777766678888899999999999999987 444 557789999998754
No 51
>PLN02452 phosphoserine transaminase
Probab=82.25 E-value=4.1 Score=33.57 Aligned_cols=55 Identities=20% Similarity=0.106 Sum_probs=40.7
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEE-cccc--e-eeEEEEeccc
Q psy9810 15 LWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVI-YEVL--M-GLVCFRLKTA 69 (154)
Q Consensus 15 ~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~-~~p~--l-~~v~Fr~~~~ 69 (154)
+-.+|+.+=.+ |+..+.++..++++++++.|++.++|... .+|+ . .+|+|+....
T Consensus 251 l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~ 310 (365)
T PLN02452 251 CGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS 310 (365)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc
Confidence 34567777555 79999999999999999999998888322 2222 2 4799998664
No 52
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=82.25 E-value=6.7 Score=31.89 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEcc----cceeeEEEEecc
Q psy9810 27 LQEYIRKQISLAKEFEQLVRSDDRFEVIYE----VLMGLVCFRLKT 68 (154)
Q Consensus 27 ~~~~i~~~~~~a~~~~~~i~~~~~~el~~~----p~l~~v~Fr~~~ 68 (154)
+++..++..++++++.+.|++.++++++.+ +..+++.|...+
T Consensus 292 ~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (397)
T TIGR01976 292 FQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHG 337 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCC
Confidence 677788889999999999999888998764 257888887753
No 53
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=81.54 E-value=6.1 Score=31.39 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc-----eeeEEEEecc
Q psy9810 22 LGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL-----MGLVCFRLKT 68 (154)
Q Consensus 22 ~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~-----l~~v~Fr~~~ 68 (154)
...+++.+.+++..++++++.+.|++.|+++++.++. ..+++|+..+
T Consensus 225 ~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 276 (352)
T cd00616 225 AQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDP 276 (352)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECC
Confidence 3556788889999999999999999999999876543 4578888763
No 54
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=81.35 E-value=3.2 Score=34.04 Aligned_cols=57 Identities=14% Similarity=0.296 Sum_probs=44.3
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc-ccceeeEEEEecc
Q psy9810 10 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY-EVLMGLVCFRLKT 68 (154)
Q Consensus 10 ~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~-~p~l~~v~Fr~~~ 68 (154)
...+..|+.++.+ +-+...+++..++|..+++.++++|..+-+. ||.-++++|-..+
T Consensus 232 ~s~~~a~l~~~~L--~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 232 LSPFDSYLLMRGL--KTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred CCHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 3455566665554 5589999999999999999999999976555 6666688998753
No 55
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=80.99 E-value=4.3 Score=33.17 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc-ceeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV-LMGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p-~l~~v~Fr~~~ 68 (154)
+.-|+.++ |.+-+...+++..++++.+++.|+++|++..+..| .-+.++|.+..
T Consensus 235 ~~a~l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~ 289 (366)
T PRK08247 235 FDSWLLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD 289 (366)
T ss_pred HHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC
Confidence 34455555 44566788889999999999999999999876666 77889998743
No 56
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=80.98 E-value=8.6 Score=30.99 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc--ccceeeEEEEec
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY--EVLMGLVCFRLK 67 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~--~p~l~~v~Fr~~ 67 (154)
+..++.++..+ .+. .+.+.+..++++++++.|++.|+++++. +...|++.|+..
T Consensus 246 ~~~~~~al~~~-~~~-~~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~ 301 (361)
T cd06452 246 LVTLMASFPHV-KER-VKRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETP 301 (361)
T ss_pred HHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcC
Confidence 33444444443 333 3456667888999999999999999873 345667777764
No 57
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=80.98 E-value=3.4 Score=34.46 Aligned_cols=39 Identities=8% Similarity=0.113 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 22 LGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 22 ~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
.|.+-+.-++++.|++|..+++.|++||...-|+-|.|.
T Consensus 285 qGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~ 323 (426)
T COG2873 285 QGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLA 323 (426)
T ss_pred hchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCC
Confidence 478888999999999999999999999999988877654
No 58
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=80.93 E-value=5.2 Score=37.41 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=34.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDR 50 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~ 50 (154)
++..|+-++.+|.+|+++.-++++.+|.|+++.|+...+
T Consensus 789 l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~ 827 (993)
T PLN02414 789 LPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP 827 (993)
T ss_pred HHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 346799999999999999999999999999999987433
No 59
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=80.30 E-value=4.8 Score=32.77 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEc-cc--ce-eeEEEEecc
Q psy9810 13 LKLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIY-EV--LM-GLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~-~p--~l-~~v~Fr~~~ 68 (154)
.-+-.+|+.+=.+ |+.++.++...+++++.+.+++.|+++... +| .. .+++|.+.+
T Consensus 234 ~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~ 294 (349)
T TIGR01364 234 YVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGN 294 (349)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCC
Confidence 3455678888777 799999999999999999999998886663 22 23 468898765
No 60
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=79.52 E-value=7.2 Score=31.16 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc--eeeE-EEEe
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL--MGLV-CFRL 66 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~--l~~v-~Fr~ 66 (154)
..+..+++.+...|+.+..++..++++++.+.+.+. ++++..+|. .+++ +++.
T Consensus 243 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 298 (356)
T cd06451 243 YALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLV 298 (356)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEEC
Confidence 466788899999999999999999999999999986 898875432 4444 3444
No 61
>PRK05968 hypothetical protein; Provisional
Probab=79.41 E-value=4.7 Score=33.29 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc------------eeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL------------MGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~------------l~~v~Fr~~~ 68 (154)
+-.|+. ..|.+.+...+++..++|+.+++.|+++|.++.+..|. .++++|...+
T Consensus 246 ~~A~~~--l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 246 FEAWLL--LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred HHHHHH--HcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 445554 44455678999999999999999999999998888663 2488888763
No 62
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=79.37 E-value=1.9 Score=32.61 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHH-HHHHHHHHhCCCCCCChHHHHHHHHH
Q psy9810 90 ALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTF-WDNAIDKLYTDQVPAHPVVQELNKVI 150 (154)
Q Consensus 90 ~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~-w~~~i~~~~~g~~~~~p~~~aL~~~~ 150 (154)
..+.++..+++++..++++.|....+........| |.+.+. +.. .++|+..++..+.
T Consensus 22 ~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a-i~~---gd~l~~~a~~~l~ 79 (236)
T cd00867 22 RLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA-ILA---GDYLLARAFQLLA 79 (236)
T ss_pred HHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH-HHH---HHHHHHHHHHHHH
Confidence 67899999999999999999987655444445555 655533 222 2466666665544
No 63
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=78.97 E-value=4.9 Score=33.44 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=38.6
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..-.|+.++ |.+-+.-++++..++|+.+++.|++||..+-|.-|-+
T Consensus 240 p~da~ll~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl 285 (386)
T PF01053_consen 240 PFDAWLLLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGL 285 (386)
T ss_dssp HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTS
T ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEccc
Confidence 455676665 7888999999999999999999999999987777744
No 64
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=78.58 E-value=5.4 Score=32.38 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeE-EEccc--ce-eeEEEEecc
Q psy9810 13 LKLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFE-VIYEV--LM-GLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~e-l~~~p--~l-~~v~Fr~~~ 68 (154)
.-+..+++.+=.. |++++.++..++++++.+.|++.|++. ...+| .. .+++|.+..
T Consensus 242 ~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~ 302 (355)
T cd00611 242 YMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGK 302 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCC
Confidence 4567788888777 799999999999999999999998874 32222 24 359998766
No 65
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=77.78 E-value=6.7 Score=32.30 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEEcccc----eeeEEEEec
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSD----DRFEVIYEVL----MGLVCFRLK 67 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~----~~~el~~~p~----l~~v~Fr~~ 67 (154)
+-.+++.+-..|+.+..++..++++++.+.+++. |+++++.+.+ .++++|++.
T Consensus 295 l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~ 355 (406)
T TIGR01814 295 LRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP 355 (406)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec
Confidence 4446666666778888899999999999999775 4699887532 358899875
No 66
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=75.89 E-value=9.1 Score=31.34 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=41.9
Q ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-cc--e-eeEEEEecc
Q psy9810 16 WFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIYE-VL--M-GLVCFRLKT 68 (154)
Q Consensus 16 w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-p~--l-~~v~Fr~~~ 68 (154)
-.+|+.+=.. |++++.++..++++++.+.+++.++++++.+ |. . .+++|++.+
T Consensus 258 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~ 315 (378)
T PRK03080 258 LDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD 315 (378)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC
Confidence 4478888666 8999999999999999999999988887742 32 2 479998755
No 67
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=75.66 E-value=7.6 Score=31.67 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
.+-.|+.++.+ +.+...+++..++|+++++.++++|.++-+.-|.
T Consensus 223 p~~a~~~l~~l--~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~ 267 (369)
T cd00614 223 PFDAWLLLRGL--KTLPLRMERHSENALKVAEFLEKHPKVERVYYPG 267 (369)
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCC
Confidence 45566665544 5677789999999999999999999887776663
No 68
>PRK06460 hypothetical protein; Provisional
Probab=74.10 E-value=8.1 Score=31.75 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
...|+.++ |.+-+...+++..++++++++.|+++|.++-+.-|-|
T Consensus 228 ~~a~~~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l 272 (376)
T PRK06460 228 HAAYLTLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGL 272 (376)
T ss_pred HHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCC
Confidence 34455544 6788999999999999999999999998877766644
No 69
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=73.68 E-value=8.3 Score=31.53 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc--ce-eeEEEEeccc
Q psy9810 14 KLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV--LM-GLVCFRLKTA 69 (154)
Q Consensus 14 k~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p--~l-~~v~Fr~~~~ 69 (154)
.+-.+|+.+=.. |+.++.++...+++++.+.+++.+-+..+.+| .. .+++|++...
T Consensus 246 aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~ 305 (360)
T PRK05355 246 LAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE 305 (360)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh
Confidence 455677888777 79999999999999999999998744443332 24 4699997663
No 70
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=73.45 E-value=5.3 Score=33.72 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=33.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 21 LLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 21 ~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..|.+-+..++++.+++|..+++.|++||.++-|.-|-+
T Consensus 295 ~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl 333 (437)
T PRK05613 295 AQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGL 333 (437)
T ss_pred HcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCC
Confidence 356778899999999999999999999999877766644
No 71
>PRK06767 methionine gamma-lyase; Provisional
Probab=73.21 E-value=8.4 Score=31.71 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=40.5
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc-----------eeeEEEEec
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL-----------MGLVCFRLK 67 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~-----------l~~v~Fr~~ 67 (154)
.+-.|+.++.+ +-+..++++..++|+++++.|+++|+++.+.-|+ .++|+|...
T Consensus 244 ~~~a~l~~~~L--~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~ 308 (386)
T PRK06767 244 PFDAWLLLRGL--KTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIK 308 (386)
T ss_pred HHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEc
Confidence 34456655444 4556788999999999999999999999877552 346778765
No 72
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.22 E-value=5.6 Score=33.57 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 19 LRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 19 l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
+-..|.+-+...+++..++|..+++.|++||.++-|.-|-
T Consensus 288 l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPg 327 (436)
T PRK07812 288 LIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAG 327 (436)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 4456888899999999999999999999999988777663
No 73
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=72.20 E-value=10 Score=31.24 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=39.7
Q ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 10 FRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 10 ~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
...+-.|+.++ |.+-+...+++..++|..+++.+++||..+-|.-|-+.
T Consensus 232 ~sp~~a~l~lr--~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~ 280 (382)
T TIGR02080 232 GGAFDSYLTLR--GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLP 280 (382)
T ss_pred CCHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence 44556677755 66788888999999999999999999999877777554
No 74
>PLN02651 cysteine desulfurase
Probab=72.01 E-value=25 Score=28.35 Aligned_cols=55 Identities=13% Similarity=-0.036 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEcc--cc---eeeEEEEecc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRS-DDRFEVIYE--VL---MGLVCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~-~~~~el~~~--p~---l~~v~Fr~~~ 68 (154)
+.+-.+++.+- ++.++..++..++++++.+.+++ .|+++++.+ |+ -++++|.+.+
T Consensus 244 ~~l~~al~~~~-~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~ 304 (364)
T PLN02651 244 VGLGAACELAM-KEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY 304 (364)
T ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC
Confidence 44556666664 35577788999999999999985 689999985 33 2489998854
No 75
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=71.21 E-value=6.6 Score=32.97 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 19 LRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 19 l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
+-..|.+-+...+++..++|..+++.|++||.++-|.-|.+
T Consensus 279 l~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l 319 (425)
T PRK06084 279 LILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGL 319 (425)
T ss_pred HHHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 33447788999999999999999999999999887766643
No 76
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=70.90 E-value=5.4 Score=29.15 Aligned_cols=45 Identities=18% Similarity=0.080 Sum_probs=34.8
Q ss_pred hhhhhcCch--hhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHH
Q psy9810 81 FLCTLLLPK--ALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFW 125 (154)
Q Consensus 81 ~l~~~~lp~--~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w 125 (154)
++.+.+.|. ..+..+..+++++..+|++.|....+........||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~ 49 (243)
T cd00385 3 PLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV 49 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH
Confidence 345667777 889999999999999999999877655555555555
No 77
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=70.68 E-value=25 Score=28.13 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=38.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc---eeeEEEEec
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL---MGLVCFRLK 67 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~---l~~v~Fr~~ 67 (154)
+-.+++.+ .+|.++..++..++++++.+.|++ ++++++.+|. ..+++|...
T Consensus 248 l~~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~ 301 (353)
T TIGR03235 248 MGEAAEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSID 301 (353)
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeC
Confidence 44445544 357788888999999999999988 8999986543 347888764
No 78
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=69.37 E-value=7.5 Score=32.27 Aligned_cols=46 Identities=15% Similarity=0.285 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
+-.| |-..|.+-+.-++++++++|..+++.|++||..+-|.-|-+.
T Consensus 237 ~~a~--l~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~ 282 (388)
T PRK08861 237 FDSY--MTLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLP 282 (388)
T ss_pred HHHH--HHHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence 3445 444567788889999999999999999999998877766443
No 79
>PLN02721 threonine aldolase
Probab=68.96 E-value=28 Score=27.59 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEE-EcccceeeEEEEecc
Q psy9810 30 YIRKQISLAKEFEQLVRSDDRFEV-IYEVLMGLVCFRLKT 68 (154)
Q Consensus 30 ~i~~~~~~a~~~~~~i~~~~~~el-~~~p~l~~v~Fr~~~ 68 (154)
.+++..++++++.+.|++.+++++ +.+|..+.+.|+..+
T Consensus 259 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 298 (353)
T PLN02721 259 KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITD 298 (353)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccC
Confidence 455556788999999999889876 677788888888754
No 80
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.51 E-value=7.3 Score=32.78 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=33.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 20 RLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 20 ~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
-..|.+-+...+++..++|..+++.|++||.++-+.-|.+.
T Consensus 285 ~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~ 325 (431)
T PRK08248 285 LLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLP 325 (431)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCC
Confidence 34466677799999999999999999999998877766443
No 81
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=68.45 E-value=8.7 Score=32.23 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 19 LRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 19 l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
+-..|.+-+..++++..++|..+++.|++||.++-+.-|.+
T Consensus 283 l~~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l 323 (427)
T PRK05994 283 LILTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGL 323 (427)
T ss_pred HHHcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 34456678889999999999999999999999887776654
No 82
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=68.32 E-value=11 Score=31.23 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=37.8
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..+-.|+.++ |.+-+...+++..++|+++++.++++|+++-+.-|.+
T Consensus 242 ~~~~a~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l 288 (391)
T TIGR01328 242 SPFDAWLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGF 288 (391)
T ss_pred CcHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 4456677765 4566778899999999999999999999887777654
No 83
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=68.32 E-value=13 Score=30.62 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
....|..++ |.+-+...+++.+++|..+++.+++||..+-+.-|-+
T Consensus 232 p~~a~~~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l 277 (377)
T TIGR01324 232 ADDAYTTLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPAL 277 (377)
T ss_pred HHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCC
Confidence 345666665 5567777899999999999999999999877766643
No 84
>PRK09028 cystathionine beta-lyase; Provisional
Probab=67.62 E-value=8.4 Score=32.12 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
...-.|+.+ .|.+-+.-++++++++|..+++.|++||..+-|.-|-
T Consensus 242 ~p~~a~l~~--rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPg 287 (394)
T PRK09028 242 SPDDVYLAM--RGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPA 287 (394)
T ss_pred CHHHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCC
Confidence 344456444 5667789999999999999999999999988777664
No 85
>PRK05967 cystathionine beta-lyase; Provisional
Probab=67.29 E-value=9.4 Score=31.87 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
...|+. ..|.+-+.-++++.+++|..+++.|++||..+-|.-|-
T Consensus 247 ~da~l~--~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPg 290 (395)
T PRK05967 247 DDTYQI--LRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPA 290 (395)
T ss_pred HHHHHH--HcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCC
Confidence 344543 45778889999999999999999999999987776664
No 86
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.11 E-value=8.8 Score=32.44 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
+.-|+.++ |.+-+..++++..++|..+++.|+++|.++-+.-|-
T Consensus 277 ~~a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPg 320 (432)
T PRK06702 277 FNAYISNI--GLETLHLRMERHSENALAVAKWLADHERIEWVNYPG 320 (432)
T ss_pred HHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCC
Confidence 33444443 446688999999999999999999999988777663
No 87
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=66.93 E-value=11 Score=31.52 Aligned_cols=43 Identities=16% Similarity=0.369 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
-.|+.++ |.+-+.-+++++.++|..+++.++++|.++-|.-|-
T Consensus 250 dA~l~lR--GlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPg 292 (396)
T COG0626 250 DAWLLLR--GLRTLALRMERHNENALKIAEFLADHPKVKKVYYPG 292 (396)
T ss_pred HHHHHHh--ccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 3466654 668888899999999999999999999999888885
No 88
>PLN02409 serine--glyoxylate aminotransaminase
Probab=66.62 E-value=27 Score=28.81 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc-c--e-eeEEEEecc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV-L--M-GLVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p-~--l-~~v~Fr~~~ 68 (154)
.+-.+++.+-..|++++.++.-++++++.+.+++. +++++.++ . . .++||++.+
T Consensus 258 al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~ 315 (401)
T PLN02409 258 GLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPE 315 (401)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCC
Confidence 44556666667789999999999999999999875 89988742 2 3 456787643
No 89
>PRK07503 methionine gamma-lyase; Provisional
Probab=66.60 E-value=12 Score=31.00 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=36.7
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..+-.|+.++ |.+-+...+++..++|..+++.++++|.++.+.-|.+
T Consensus 248 s~~~a~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l 294 (403)
T PRK07503 248 SPFDAFLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGL 294 (403)
T ss_pred CHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 4455566655 5577888899999999999999999998887765643
No 90
>PRK08114 cystathionine beta-lyase; Provisional
Probab=65.60 E-value=8.9 Score=32.02 Aligned_cols=45 Identities=7% Similarity=0.100 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
...|+. ..|.+-+.-++++++++|..+++.|++||..+-|.-|-+
T Consensus 247 ~~a~l~--~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl 291 (395)
T PRK08114 247 DTAYMT--SRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPAL 291 (395)
T ss_pred HHHHHH--HcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCC
Confidence 344533 456677888999999999999999999999887776643
No 91
>PLN02509 cystathionine beta-lyase
Probab=65.34 E-value=15 Score=31.32 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
.....|+.++ |.+-+...+++..++|+++++.+++||..+-|.-|-|
T Consensus 314 ~p~~A~l~lr--~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL 360 (464)
T PLN02509 314 APFDCWLCLR--GIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGL 360 (464)
T ss_pred CHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCC
Confidence 3445565555 5567788999999999999999999999887776654
No 92
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=65.21 E-value=17 Score=30.05 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
+..|+.+ .|.+-+..++++..++|..+++.++++|+++-+.-|-+.
T Consensus 244 ~~a~~~l--~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~ 289 (390)
T PRK08133 244 FNAWVFL--KGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLP 289 (390)
T ss_pred HHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence 4455554 366789999999999999999999999998877776543
No 93
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=64.23 E-value=27 Score=27.61 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc--ee-eEEEEecc
Q psy9810 15 LWFVLRLLGVKY-LQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL--MG-LVCFRLKT 68 (154)
Q Consensus 15 ~w~~l~~~G~~g-~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~--l~-~v~Fr~~~ 68 (154)
+..+++.+-.+| +.+.+++..++++++.+.+++. +++++.++. .+ +++|+..+
T Consensus 244 ~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 300 (355)
T TIGR03301 244 FAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPD 300 (355)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCC
Confidence 345777777776 8888899999999999999876 888766543 22 45677643
No 94
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=63.94 E-value=18 Score=30.12 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
..+-.|+.+ .|.+-+...+++..++|..+++.++++|.++-|.-|.
T Consensus 242 s~~~a~l~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~ 287 (405)
T PRK08776 242 SPFDAFLTL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPG 287 (405)
T ss_pred CHHHHHHHH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCC
Confidence 455666666 5778899999999999999999999999888766664
No 95
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=62.93 E-value=14 Score=30.55 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
.+--|+.++.+ +-+...+++..++|..+++.+++||.++-|.-|-+.
T Consensus 235 p~~~~l~~rgl--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~ 281 (386)
T PRK08045 235 AFDSYLLLRGL--RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLP 281 (386)
T ss_pred HHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCC
Confidence 34556666555 458999999999999999999999998877666544
No 96
>PRK05939 hypothetical protein; Provisional
Probab=62.47 E-value=10 Score=31.54 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 21 LLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 21 ~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
..|.+-+...++++.++|..+++.+++||..+-|.-|-
T Consensus 257 ~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~ 294 (397)
T PRK05939 257 AIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPG 294 (397)
T ss_pred HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 35778889999999999999999999999877665554
No 97
>PRK06434 cystathionine gamma-lyase; Validated
Probab=61.38 E-value=13 Score=30.90 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..+..|+. ..|.+-+..++++..++|+.+++.|.+||..+-|.-|-+
T Consensus 243 ~~~~A~l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl 289 (384)
T PRK06434 243 DPIQAYLA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDT 289 (384)
T ss_pred CHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCh
Confidence 34444544 456677899999999999999999999999887777765
No 98
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=60.87 E-value=20 Score=29.55 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
..|+.+ .|.+.+...+++..++|..+++.++++|.++-+.-|.+.
T Consensus 234 ~~~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~ 278 (380)
T PRK06176 234 DSWLLQ--RGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLP 278 (380)
T ss_pred HHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCC
Confidence 345444 466778899999999999999999999998877777653
No 99
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=60.60 E-value=26 Score=29.02 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=35.0
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-cc--ee-eEEEEecc
Q psy9810 24 VK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIYE-VL--MG-LVCFRLKT 68 (154)
Q Consensus 24 ~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-p~--l~-~v~Fr~~~ 68 (154)
.+ |+..++.++.++|+.+.+.|++.+.++++.+ +. ++ +++|++.+
T Consensus 257 ~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~ 306 (374)
T TIGR01365 257 SIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVD 306 (374)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCC
Confidence 54 8999999999999999999999855888763 22 22 47788744
No 100
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=60.39 E-value=41 Score=26.99 Aligned_cols=55 Identities=13% Similarity=0.000 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc--ceee-EEEEecc
Q psy9810 13 LKLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV--LMGL-VCFRLKT 68 (154)
Q Consensus 13 lk~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p--~l~~-v~Fr~~~ 68 (154)
+.+..+++.+-.+ |+.+..++..+++.++.+.+++. +++++.++ ..++ ++|++.+
T Consensus 247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 305 (363)
T TIGR02326 247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPE 305 (363)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCC
Confidence 3355567777666 48888899999999999999886 88887654 3444 5688754
No 101
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=59.93 E-value=21 Score=29.63 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=37.7
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
..+-.|+.++ |.+-+...+++..++|+.+++.++++|.++-|.-|-+.
T Consensus 245 s~~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~ 292 (398)
T PRK08249 245 DPMSAYLILR--GMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLE 292 (398)
T ss_pred CHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 3344555554 66778889999999999999999999998877777553
No 102
>PRK07582 cystathionine gamma-lyase; Validated
Probab=59.50 E-value=17 Score=29.77 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=34.9
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
.+-.|+.++.+ +-+...+++..++|..+++.|+++|..+-|.-|-
T Consensus 230 ~~~a~l~~r~l--~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~ 274 (366)
T PRK07582 230 PFEAWLAHRSL--GTLGLRFARQCANALAVAELLAGHPAVRGVRYPG 274 (366)
T ss_pred HHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCC
Confidence 34556555555 4577888999999999999999999988777443
No 103
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=59.25 E-value=65 Score=26.03 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc--c-eeeEEEEec
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV--L-MGLVCFRLK 67 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p--~-l~~v~Fr~~ 67 (154)
+-.+++.. .++++...++.-.+++++.+.|++.|+++++.++ . -++++|...
T Consensus 246 l~~al~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T TIGR03403 246 MGEAMRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK 300 (382)
T ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC
Confidence 33445443 3456777788888999999999999999988653 2 246677764
No 104
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=58.82 E-value=20 Score=29.60 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=35.8
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
.+..|+.++.+ +-+...+++..++|..+++.++++|.++-|.-|.+
T Consensus 244 ~~~a~l~~~~L--~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l 289 (388)
T PRK07811 244 PFDAYLTLRGL--KTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGL 289 (388)
T ss_pred HHHHHHHHhcc--CcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCC
Confidence 34455555443 45788899999999999999999999988777765
No 105
>PLN02724 Molybdenum cofactor sulfurase
Probab=58.64 E-value=34 Score=31.27 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC------CeEEEccc--------ceeeEEEEeccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD------RFEVIYEV--------LMGLVCFRLKTA 69 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~------~~el~~~p--------~l~~v~Fr~~~~ 69 (154)
+.+-.+++.+=.-|+.++-++...|++++.+.|++.+ +.+++.++ ..+||+|.....
T Consensus 324 ~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~ 394 (805)
T PLN02724 324 AALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRA 394 (805)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcC
Confidence 3455666666555777777888899999999999876 57777542 467999998764
No 106
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=57.96 E-value=41 Score=27.00 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc--ee-eEEEEecc
Q psy9810 14 KLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL--MG-LVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~--l~-~v~Fr~~~ 68 (154)
.+..+++.+-.+ ++.+.+++..++++++.+.+++. +++++.++. .+ +++|....
T Consensus 249 ~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 306 (368)
T PRK13479 249 AFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPA 306 (368)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCC
Confidence 455677776555 47888899999999999999887 888765543 22 57787643
No 107
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=57.63 E-value=20 Score=29.65 Aligned_cols=47 Identities=15% Similarity=0.281 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..+-.|+.++ |.+-+...+++..++|+.+++.|+++|+++-|.-|-+
T Consensus 247 s~~~A~~~l~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l 293 (398)
T PRK07504 247 SPFNAWTLLK--GLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGR 293 (398)
T ss_pred CHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCC
Confidence 3345555554 5677889999999999999999999999876665543
No 108
>PRK07671 cystathionine beta-lyase; Provisional
Probab=57.51 E-value=21 Score=29.32 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
...|+.++ |.+-+...+++..++|+.+++.|+++|.++-+.-|.+.
T Consensus 233 ~~a~l~~~--~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~ 278 (377)
T PRK07671 233 QDSWLLLR--GLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLP 278 (377)
T ss_pred HHHHHHHc--CcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCC
Confidence 34454444 45667789999999999999999999998877766543
No 109
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=56.70 E-value=58 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcc--cceeeEEEEec
Q psy9810 29 EYIRKQISLAKEFEQLVRSDDRFEVIYE--VLMGLVCFRLK 67 (154)
Q Consensus 29 ~~i~~~~~~a~~~~~~i~~~~~~el~~~--p~l~~v~Fr~~ 67 (154)
+.+++..++++++.+.|++.|+|+++.+ ...++++|...
T Consensus 280 ~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~ 320 (387)
T PRK09331 280 KRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETP 320 (387)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCC
Confidence 3556678899999999999999998853 23556667653
No 110
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=56.45 E-value=17 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccccee
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~ 60 (154)
+..|+.++ |.+-+...+++..++|..+++.++++|.++-|.-|-+.
T Consensus 236 ~~a~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~ 281 (385)
T PRK08574 236 FEAYLVLR--GLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLP 281 (385)
T ss_pred HHHHHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCC
Confidence 44455554 55678899999999999999999999998877666553
No 111
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=56.31 E-value=21 Score=29.33 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
.-.|+.+ .|.+-+...+++..++|.++++.++++|.++-|.-|.+
T Consensus 237 ~~a~~~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l 281 (380)
T TIGR01325 237 FNAWVLL--KGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGL 281 (380)
T ss_pred HHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCC
Confidence 3445555 46777888899999999999999999998876666543
No 112
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=56.29 E-value=49 Score=27.68 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc--e-eeEEEEecc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL--M-GLVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~--l-~~v~Fr~~~ 68 (154)
.+-.+|+.+=.+|+++.++++-.+++.+.+.++.. ||+++.+|. + ++.+|+.+.
T Consensus 250 aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~ 306 (383)
T COG0075 250 ALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPE 306 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCC
Confidence 45567888889999999999999999999999986 999988542 3 345666544
No 113
>PRK07050 cystathionine beta-lyase; Provisional
Probab=56.16 E-value=14 Score=30.53 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=36.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
+..-|+.++ |.+.+...+++..++|..+++.|+++|..+-+..|.+
T Consensus 248 ~~~a~l~lr--~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l 293 (394)
T PRK07050 248 ADDCSLVLR--GLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPAL 293 (394)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 334455553 5667788999999999999999999999888877654
No 114
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.56 E-value=17 Score=30.59 Aligned_cols=38 Identities=8% Similarity=0.170 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 22 LGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 22 ~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
.|.+-+...+++..++|..+++.++++|.++-|.-|.+
T Consensus 287 ~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l 324 (433)
T PRK08134 287 QGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPEL 324 (433)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 45566889999999999999999999999877666654
No 115
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=53.88 E-value=45 Score=28.02 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc---cceeeEEEEecc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE---VLMGLVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~---p~l~~v~Fr~~~ 68 (154)
.+-.+++.+-..++.+..++..+++++|.+.+++. ++++..+ +...+|.|...+
T Consensus 288 al~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~ 344 (452)
T PTZ00094 288 AIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFG 344 (452)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCC
Confidence 45566777766677788888999999999999875 8998752 234566776543
No 116
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=53.74 E-value=33 Score=28.71 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRS 47 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~ 47 (154)
.+.+..+|-.+|..||++.+...+++=.++.+.+++
T Consensus 258 ~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~ 293 (389)
T PF05889_consen 258 SLDLFITLLSLGCTGYGALLKERKASFPYLKERLKK 293 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999988853
No 117
>KOG2040|consensus
Probab=53.68 E-value=15 Score=33.04 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=41.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEe
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRL 66 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~ 66 (154)
-|+-+|.+|..|+.+.-.-+|-+|.|+++.+++| +.++..-+-+.|.-.|
T Consensus 803 SwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEF 852 (1001)
T KOG2040|consen 803 SWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEF 852 (1001)
T ss_pred HHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeee
Confidence 4999999999999999999999999999999986 6666665666665544
No 118
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=53.36 E-value=45 Score=28.53 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc-ceeeEEEEecc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV-LMGLVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p-~l~~v~Fr~~~ 68 (154)
.+-.+++.+=..++.+..++..+++++|++.+++ .+|.++.+. +.+++.+.+.+
T Consensus 299 al~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~ 353 (475)
T PLN03226 299 ALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRP 353 (475)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccC
Confidence 3556677775567777788899999999999988 699998632 23455554433
No 119
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=51.81 E-value=80 Score=25.86 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=36.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc--e---eeEEEEeccc
Q psy9810 17 FVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL--M---GLVCFRLKTA 69 (154)
Q Consensus 17 ~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~--l---~~v~Fr~~~~ 69 (154)
.+++.+ .+++.+..++.-.+++++.+.|+..|++++..+++ + .+++|...+.
T Consensus 252 ~al~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~ 308 (402)
T TIGR02006 252 EAFRIA-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEG 308 (402)
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCH
Confidence 444444 35678888899999999999999989988775332 2 2577775443
No 120
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=51.75 E-value=28 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.289 Sum_probs=35.8
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV 57 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p 57 (154)
..+-.|+.++ |.+-+...+++..++|..+++.|+++|.++-|.-|
T Consensus 252 s~~~a~l~l~--~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP 296 (403)
T PRK07810 252 SAFNAWVLLK--GLETLALRVRHSNASALRIAEFLEGHPAVRWVRYP 296 (403)
T ss_pred CHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECC
Confidence 3444555544 66788999999999999999999999998877655
No 121
>KOG2862|consensus
Probab=51.40 E-value=37 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY 55 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~ 55 (154)
|=.+|+.+=++|+.+.++++-++++++...|+++ |+++..
T Consensus 268 Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv 307 (385)
T KOG2862|consen 268 LRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFV 307 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ccccee
Confidence 3467888889999999999999999999999987 888765
No 122
>PRK07049 methionine gamma-lyase; Validated
Probab=48.77 E-value=31 Score=28.94 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV 57 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p 57 (154)
..+-.|+.++.+ +-+...+++..++++.+++.|+++|+++-|.-|
T Consensus 276 s~~~a~l~~r~L--~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp 320 (427)
T PRK07049 276 DPHSCWMLGRSL--ETLVLRMERANRNARAVAEFLRDHPKVEKLHYL 320 (427)
T ss_pred CHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHHHHHhCCCccEEECC
Confidence 345667776655 568888999999999999999999998877666
No 123
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=46.95 E-value=30 Score=28.83 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 20 RLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 20 ~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
-..|.+.+..++++...+|..+++.|.++|++..+.-|-+
T Consensus 277 ~~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l 316 (418)
T TIGR01326 277 LLQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGL 316 (418)
T ss_pred HHCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 3455667778889989999999999999999887776654
No 124
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=46.29 E-value=1.1e+02 Score=24.76 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=35.0
Q ss_pred HHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEE--cccceeeEEEEec
Q psy9810 14 KLWFVLRLLGV-KYLQEYIRKQISLAKEFEQLVRSDDRFEVI--YEVLMGLVCFRLK 67 (154)
Q Consensus 14 k~w~~l~~~G~-~g~~~~i~~~~~~a~~~~~~i~~~~~~el~--~~p~l~~v~Fr~~ 67 (154)
...+.+..++. ..+-+..++..++++++.+.|++. +|+++ .++..|++.|+..
T Consensus 252 ~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~ 307 (370)
T TIGR02539 252 PIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETP 307 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECC
Confidence 44444555542 222233455677889999999986 79874 4677889988863
No 125
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=45.64 E-value=1e+02 Score=25.20 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc-ccceeeEEEEecc
Q psy9810 17 FVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY-EVLMGLVCFRLKT 68 (154)
Q Consensus 17 ~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~-~p~l~~v~Fr~~~ 68 (154)
.++.....+++.+.+++..++++++.+.|++. ++++.. .++.+++.+...+
T Consensus 271 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~ 322 (416)
T PRK00011 271 VAFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRS 322 (416)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcc
Confidence 44444445678889999999999999999985 788753 2345677776643
No 126
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=45.02 E-value=81 Score=24.47 Aligned_cols=54 Identities=9% Similarity=-0.079 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
.+...++... +++.++.++..++++++.+.+++.+...+..++.-+.+.|++.+
T Consensus 245 ~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~ 298 (350)
T cd00609 245 AAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPE 298 (350)
T ss_pred HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCC
Confidence 3444555443 78888889999999999999998866554344444566677654
No 127
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=44.53 E-value=61 Score=19.27 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHHHhhhhhhcccCC--ChHHHHHHHHHHHHHHHHHhCC
Q psy9810 96 FVIRAFNIEVAKVQDNVS--DVTTGQARLTFWDNAIDKLYTD 135 (154)
Q Consensus 96 ~al~a~~~~~~~i~d~~~--~p~~~~~rL~~w~~~i~~~~~g 135 (154)
..+++|+.+++.....+. +-...+.|+.--.++|..++.-
T Consensus 2 l~lraFN~EcD~~i~kv~~~Ni~~~~~rI~ksf~~iNkl~~~ 43 (56)
T PF13250_consen 2 LMLRAFNGECDAAISKVKYNNIDTMEKRIEKSFEQINKLGKT 43 (56)
T ss_pred hhHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHcCcc
Confidence 478999999998887765 5667788888888888887753
No 128
>PRK06234 methionine gamma-lyase; Provisional
Probab=43.70 E-value=45 Score=27.61 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=34.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
.+-.|+.++ |.+-+...+++..++|+.+++.++++|..+-+.-|.+
T Consensus 250 p~~a~l~~~--~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l 295 (400)
T PRK06234 250 PFEAFLIIR--GMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGL 295 (400)
T ss_pred HHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCC
Confidence 344555554 4455668999999999999999999998776665544
No 129
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=42.36 E-value=66 Score=27.22 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred HHH-hHHHHHHHHHHHHHHHHHHHHHH---hcCCCeEEEcccceee-EEEEeccc
Q psy9810 20 RLL-GVKYLQEYIRKQISLAKEFEQLV---RSDDRFEVIYEVLMGL-VCFRLKTA 69 (154)
Q Consensus 20 ~~~-G~~g~~~~i~~~~~~a~~~~~~i---~~~~~~el~~~p~l~~-v~Fr~~~~ 69 (154)
+.+ +.+| ++++++.+++|+.+.+.| +..+.|+++.+..++. -||.+.|.
T Consensus 289 ~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 342 (417)
T PF01276_consen 289 AQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPG 342 (417)
T ss_dssp HHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT
T ss_pred HHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCcc
Confidence 344 5555 567778888888899988 7788899888766553 25555553
No 130
>PRK08064 cystathionine beta-lyase; Provisional
Probab=42.19 E-value=44 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
...|+.+ .|.+-+...+++..+++..+++.|+++|.+.-+.-|.+
T Consensus 237 ~~a~l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l 281 (390)
T PRK08064 237 QDCWLVL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGL 281 (390)
T ss_pred HHHHHHH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCC
Confidence 3556544 56666789999999999999999999997655554543
No 131
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=41.37 E-value=1.1e+02 Score=24.73 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEcccc---eeeEEEEec
Q psy9810 24 VKYLQEYIRKQISLAKEFEQLVRS-DDRFEVIYEVL---MGLVCFRLK 67 (154)
Q Consensus 24 ~~g~~~~i~~~~~~a~~~~~~i~~-~~~~el~~~p~---l~~v~Fr~~ 67 (154)
.+++++..++.-++.+++.+.+++ .|++++..++. -+++.|.+.
T Consensus 250 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR03402 250 TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFE 297 (379)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEec
Confidence 566777778888899999999985 89999876543 246777664
No 132
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=40.99 E-value=61 Score=26.05 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 24 VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 24 ~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
.+-+.+.++...+..+++.+.+++.++++.+.++.-|-+.++..
T Consensus 261 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~ 304 (351)
T PRK01688 261 IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT 304 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC
Confidence 34566667777777889999999888886666777776666664
No 133
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=39.52 E-value=41 Score=27.69 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHhcC
Q psy9810 16 WFVLRLLGVKYLQEYIRKQISL--AKEFEQLVRSD 48 (154)
Q Consensus 16 w~~l~~~G~~g~~~~i~~~~~~--a~~~~~~i~~~ 48 (154)
|-.|+.+|..|+.++.-+.-+. +..+.+.|...
T Consensus 161 ~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~l 195 (340)
T PF12069_consen 161 WDNWQTLGLQGIADICARLDQEDNAQLLRKALPHL 195 (340)
T ss_pred hhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhhC
Confidence 8999999999999999886554 55666666554
No 134
>PRK12566 glycine dehydrogenase; Provisional
Probab=38.97 E-value=54 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=34.6
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE 56 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~ 56 (154)
++..|+-++.+|.+ +.+.=+.++.+|.|+++.|++. +++...
T Consensus 759 l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~--~~v~~~ 800 (954)
T PRK12566 759 LPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA--FPVLYR 800 (954)
T ss_pred HHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh--CCCCcC
Confidence 57789999999999 8887788899999999999864 555443
No 135
>PF15051 FAM198: FAM198 protein
Probab=35.07 E-value=59 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Q psy9810 23 GVKYLQEYIRKQISLAKEFEQLVRSDDRFEVI 54 (154)
Q Consensus 23 G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~ 54 (154)
|++|+..+|+-.=..|+.|.++|++| ++.++
T Consensus 293 G~~Gi~~li~~ie~R~kiLl~yi~~h-~~~~~ 323 (326)
T PF15051_consen 293 GRQGIEKLIDVIERRAKILLTYINAH-GLKVL 323 (326)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 58999999999888999999999998 66654
No 136
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=35.04 E-value=54 Score=26.92 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccce
Q psy9810 21 LLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLM 59 (154)
Q Consensus 21 ~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l 59 (154)
..|.+-+..++++...+|..+++.|++||..+-+.-|.+
T Consensus 236 ~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l 274 (378)
T TIGR01329 236 LRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGL 274 (378)
T ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCC
Confidence 345677889999999999999999999998755554443
No 137
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=34.02 E-value=91 Score=25.82 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=14.9
Q ss_pred HHHHhCCCCCCChHHHHHHHHH
Q psy9810 129 IDKLYTDQVPAHPVVQELNKVI 150 (154)
Q Consensus 129 i~~~~~g~~~~~p~~~aL~~~~ 150 (154)
.+++-+|.+..||++..+.+.+
T Consensus 114 ~~dL~~G~~qkhP~l~~v~~~l 135 (357)
T cd00686 114 FDDLQAGREQAHPWWALVNEHF 135 (357)
T ss_pred HHHHhcCCCCCCcHHHHHHHHH
Confidence 3456678888999665555444
No 138
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=33.56 E-value=67 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEe
Q psy9810 29 EYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRL 66 (154)
Q Consensus 29 ~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~ 66 (154)
..+++.++++++|++.|++. ++.++.++.-+.|-+..
T Consensus 309 ~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda 345 (450)
T TIGR02618 309 EYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDA 345 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEh
Confidence 45667888999999999987 99988888788776643
No 139
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=32.66 E-value=1.3e+02 Score=24.40 Aligned_cols=42 Identities=5% Similarity=-0.095 Sum_probs=33.6
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy9810 14 KLWFVLRLLGVK-YLQEYIRKQISLAKEFEQLVRSDDRFEVIY 55 (154)
Q Consensus 14 k~w~~l~~~G~~-g~~~~i~~~~~~a~~~~~~i~~~~~~el~~ 55 (154)
-+-.+++.+-.. |+..+.++..++++++.+.+++.+.++++.
T Consensus 245 ~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~ 287 (361)
T TIGR01366 245 LLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFV 287 (361)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 345567777666 588888999999999999999998777664
No 140
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=32.18 E-value=2.4e+02 Score=22.85 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc-ceeeEEEEecc
Q psy9810 26 YLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV-LMGLVCFRLKT 68 (154)
Q Consensus 26 g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p-~l~~v~Fr~~~ 68 (154)
++.+..++..++++++.+.|++. +|+++..| ..+.+.++..+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~ 318 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRP 318 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCc
Confidence 66778888899999999999987 88876433 46666676653
No 141
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=31.78 E-value=35 Score=19.41 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCCeEEE
Q psy9810 38 AKEFEQLVRSDDRFEVI 54 (154)
Q Consensus 38 a~~~~~~i~~~~~~el~ 54 (154)
+..|...|+.+|+||++
T Consensus 25 ~~~l~~WL~~~p~yev~ 41 (45)
T smart00592 25 AKDLERWLEENPEYEVA 41 (45)
T ss_pred HHHHHHHHhcCCCcccC
Confidence 56788999999999975
No 142
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=30.73 E-value=1.1e+02 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=31.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY 55 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~ 55 (154)
.+-.+|+..-...+++...+.+++|+.|++.+.+. +|.++.
T Consensus 285 alAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ 325 (399)
T PF00464_consen 285 ALAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVT 325 (399)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGG
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEE
Confidence 34456666556677888889999999999999986 999875
No 143
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=30.29 E-value=1.3e+02 Score=25.24 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred hcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh
Q psy9810 85 LLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHPVVQELNKVISIV 153 (154)
Q Consensus 85 ~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~g~~~~~p~~~aL~~~~~~~ 153 (154)
..+|..++..+..-..++..+|+...+ +......+ -.++..|.+..||++.++.+.++++
T Consensus 79 ~~~~~evqv~IaiyT~yvi~iDD~~~~---~~~~l~~F------~~~l~~Gq~Q~~p~L~~~~~~L~~~ 138 (376)
T PF06330_consen 79 PHLPKEVQVAIAIYTTYVIIIDDSSQE---PSDDLRTF------HQRLILGQPQKHPLLDGFASLLREM 138 (376)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTT--S----SHHHHTTH------HHHHHHT---SSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccc---ccHHHHHH------HHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 445666666655556666666666433 32211111 1456678778899999999988764
No 144
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=30.14 E-value=35 Score=19.51 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=12.2
Q ss_pred HHHHHHHhcCCCeEEE
Q psy9810 39 KEFEQLVRSDDRFEVI 54 (154)
Q Consensus 39 ~~~~~~i~~~~~~el~ 54 (154)
+.|.+.|+.||+|++.
T Consensus 28 ~~L~~WL~~~P~y~V~ 43 (46)
T PF07533_consen 28 KELEEWLEEHPGYEVA 43 (46)
T ss_dssp CCHHHHHHH-TTEEES
T ss_pred HHHHHHHHHCcCceeC
Confidence 4577889999999975
No 145
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=30.07 E-value=24 Score=27.58 Aligned_cols=35 Identities=31% Similarity=0.632 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCC------------CCCCChHHHHHHHHHHhhC
Q psy9810 120 ARLTFWDNAIDKLYTD------------QVPAHPVVQELNKVISIVG 154 (154)
Q Consensus 120 ~rL~~w~~~i~~~~~g------------~~~~~p~~~aL~~~~~~~~ 154 (154)
.-+..|-|.+.-+|-| ..|.||...||..++..||
T Consensus 220 ~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF~ 266 (330)
T COG4170 220 QMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIRAIPDFG 266 (330)
T ss_pred HHHHHHhhheEEEEecccccccchhHHhcCCCCchHHHHHHhCcccc
Confidence 3567899999888765 2488999999999988875
No 146
>KOG2040|consensus
Probab=29.93 E-value=62 Score=29.39 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 21 LLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 21 ~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
++|.+|++++-++....+-+|+..|+.. +-|+++.+=+-.+..++..
T Consensus 387 YHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~ 433 (1001)
T KOG2040|consen 387 YHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGC 433 (1001)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccccccceEEEEecC
Confidence 6899999999999999999999999975 6899998877777777765
No 147
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=29.86 E-value=76 Score=27.59 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9810 12 SLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD 49 (154)
Q Consensus 12 alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~ 49 (154)
+|.+|++|++.|.++.. -++.++-+-+.|+++|
T Consensus 626 ~lAl~vAlRSr~t~i~s-----~r~I~~~VW~~Ik~~P 658 (677)
T COG4389 626 SLALFVALRSRGTKIGS-----IRNIIKSVWNQIKSNP 658 (677)
T ss_pred HHHHHHHHHhccccchh-----HHHHHHHHHHHHhcCC
Confidence 57899999999998743 4678888899999986
No 148
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=27.98 E-value=2.1e+02 Score=19.86 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=39.6
Q ss_pred CCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEE
Q psy9810 3 QIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCF 64 (154)
Q Consensus 3 ~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~F 64 (154)
.+++=|... .+..+.-+.+|.+-..+.++..++ ..+.+.+++ .++.++..|.+...-|
T Consensus 40 ~ipGFRkGK-~P~~vi~~~~g~~i~~~~~~~~~~--~~~~~~~~~-~~~~~i~~p~i~~~~~ 97 (145)
T PF05697_consen 40 KIPGFRKGK-APRNVIEKRYGKEIREEAIEELLQ--EAYEEAIKE-EKIKPIGDPEIEEKDF 97 (145)
T ss_dssp TBTTS-TTS-S-HHHHHHHHCHHHHHHHHHHHHH--HHHHHHHHH-TTS-ESSEEEEEEEEE
T ss_pred CCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-cCCCcccccccccccc
Confidence 456667766 588999999999966777776655 556666776 4788888887754443
No 149
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=27.60 E-value=2e+02 Score=22.35 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHH
Q psy9810 121 RLTFWDNAIDKLYTDQVPAHPVVQELN 147 (154)
Q Consensus 121 rL~~w~~~i~~~~~g~~~~~p~~~aL~ 147 (154)
.++-|++..-+....+...-|...||.
T Consensus 62 ~v~awr~~y~~~g~kp~k~r~S~EALl 88 (229)
T COG3382 62 VVKAWRDAYWRFGIKPTKTRPSAEALL 88 (229)
T ss_pred HHHHHHHHHHHhCCCcCCCCCcHHHHH
Confidence 445566666666555333445555553
No 150
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=26.70 E-value=2.9e+02 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 26 YLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 26 g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
.+.+..++..++.+.+.+.++++|++++ .++.-+.+.|.+.
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~-~~~~g~~~~~~~~ 298 (346)
T TIGR01141 258 FIEKTVEEINAERERLYDGLKKLPGLEV-YPSDANFVLIRFP 298 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEE-CCCcCCEEEEecC
Confidence 4677778888889999999998889984 4555567777664
No 151
>PLN02271 serine hydroxymethyltransferase
Probab=25.86 E-value=1.6e+02 Score=26.19 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE 56 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~ 56 (154)
.+-.+++..-...|++.....+++|+.|++.+.+. +|.++..
T Consensus 420 alAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~g 461 (586)
T PLN02271 420 ALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTG 461 (586)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeC
Confidence 34456676667777888889999999999999886 9998763
No 152
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=25.41 E-value=1.2e+02 Score=25.17 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc---eeeEEEEeccc
Q psy9810 24 VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL---MGLVCFRLKTA 69 (154)
Q Consensus 24 ~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~---l~~v~Fr~~~~ 69 (154)
.-|+..++.++-+.|+.|++.|++.+-+.-...|+ .-.|||...++
T Consensus 262 ~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~ 310 (365)
T COG1932 262 QGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA 310 (365)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcH
Confidence 34788889999999999999999985443333332 33699998753
No 153
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=25.37 E-value=1.7e+02 Score=20.90 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 30 YIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 30 ~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
+.....+.-+.+++.|...|.++.+.+|+..++--|-+..
T Consensus 12 La~a~~~~L~~~~~~l~~~~~~~~lr~Pe~GLvmvr~R~g 51 (146)
T PF06754_consen 12 LARAPAEELEALAAALEPQPQVQVLRPPETGLVMVRGRDG 51 (146)
T ss_pred HHhCCHHHHHHHHHhcccCCCceEeecCCcceEEEEEEec
Confidence 3344455566677778888999999999999988877553
No 154
>COG4293 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=2.1e+02 Score=20.94 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEeccc
Q psy9810 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTA 69 (154)
Q Consensus 1 ~~~~~~sR~~~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~~ 69 (154)
|+..+|-|--.+-|+-+.+..--..|..++-.-.+-+|+.+++.++-.| .+.+.+...|..|-
T Consensus 71 d~~pe~Vr~~a~A~vva~lpv~d~~~~~aleplhiwta~~vadrl~~kp------~~~~~vLvlr~~pL 133 (184)
T COG4293 71 DSTPECVRLRAAAKVVAALPVNDPEGLDALEPLHIWTAESVADRLDFKP------KHPLAVLVLRAIPL 133 (184)
T ss_pred CCCCccccchhHhhhhhheecCCHHHHhhccchhHhhHHHHHHHhccCC------CCceEEEEEEeccc
Confidence 5678899999999999999999999999998888999999998887554 34466666776553
No 155
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=25.27 E-value=2.3e+02 Score=23.52 Aligned_cols=41 Identities=12% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-cceeeEEEEecc
Q psy9810 27 LQEYIRKQISLAKEFEQLVRSDDRFEVIYE-VLMGLVCFRLKT 68 (154)
Q Consensus 27 ~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-p~l~~v~Fr~~~ 68 (154)
..+..++..+++++|.+.+++. +|+++.+ ++.+++..-+..
T Consensus 284 ~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~ 325 (416)
T PRK13034 284 FKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRP 325 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCC
Confidence 3455678889999999999887 9998742 456665554433
No 156
>KOG1459|consensus
Probab=23.81 E-value=2.3e+02 Score=23.79 Aligned_cols=60 Identities=10% Similarity=-0.071 Sum_probs=48.4
Q ss_pred cchhhhhhhhcCchhhhhHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHhCC
Q psy9810 76 FDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTD 135 (154)
Q Consensus 76 ~~~~~~l~~~~lp~~~r~~~~al~a~~~~~~~i~d~~~~p~~~~~rL~~w~~~i~~~~~g 135 (154)
..++.++++..+-+..++.....+.+|.-++...+..-......+.++-|.-..++++.|
T Consensus 139 itk~mg~Gma~~~~~~v~ti~d~d~yChyvagLVg~glsrlf~~s~le~~~~~~e~l~ns 198 (413)
T KOG1459|consen 139 ITKRMGLGMALFIPEEVETIWDYDVYCHYVAGLVGIGLSRLFTASKLEDLLARLEQLSNS 198 (413)
T ss_pred HHHHHhchHHHhhHHHHhHHHHHHHHHHHHHHhhCCchHhhhhHHHHhhhhhhHHHHhcc
Confidence 334455566666667789999999999999999988777778888888898888888877
No 157
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=23.47 E-value=78 Score=26.29 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEEcccc----eeeEEEEeccccccccccc
Q psy9810 14 KLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDD---RFEVIYEVL----MGLVCFRLKTAKVGLRKFD 77 (154)
Q Consensus 14 k~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~---~~el~~~p~----l~~v~Fr~~~~~~~~~~~~ 77 (154)
.|--+|-.++.-++.++=++++.++.+|.++++.+- +++++.|-. =+.|.|.+.......+.+.
T Consensus 291 al~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi 361 (407)
T COG3844 291 ALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALI 361 (407)
T ss_pred HHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHH
Confidence 345566677777888999999999999999998764 477665432 3467777755433344443
No 158
>KOG2200|consensus
Probab=23.28 E-value=39 Score=29.95 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHhcCCCeEEEccccee---eEEEEeccccccccccchhhhhhhhcC
Q psy9810 24 VKYLQEYIRKQISL-------------AKEFEQLVRSDDRFEVIYEVLMG---LVCFRLKTAKVGLRKFDYENFLCTLLL 87 (154)
Q Consensus 24 ~~g~~~~i~~~~~~-------------a~~~~~~i~~~~~~el~~~p~l~---~v~Fr~~~~~~~~~~~~~~~~l~~~~l 87 (154)
.+++++++|..+.+ |..|-+.++..|. .+.+.+++ +..+.+.|....++++. +++.++
T Consensus 347 Ik~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPe--PL~t~k~~~aF~~i~~~~pkkqrlqAl~----~aillL 420 (674)
T KOG2200|consen 347 IKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPE--PLFTVKYSEAFAQIYQLVPKKQRLQALQ----LAILLL 420 (674)
T ss_pred HHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCc--ccchhhHHHHHHHHHhcCcHHHHHHHHH----HHHHhC
Confidence 35666666655544 5555556666552 11122221 23345555444455443 468889
Q ss_pred chhhhhHHHHHHHHHhhhhh
Q psy9810 88 PKALQNASFVIRAFNIEVAK 107 (154)
Q Consensus 88 p~~~r~~~~al~a~~~~~~~ 107 (154)
|..-|+++-+|-.|...+..
T Consensus 421 PDeNReaLktLL~FL~~V~a 440 (674)
T KOG2200|consen 421 PDENREALKTLLEFLNDVIA 440 (674)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 99999988888888776643
No 159
>PLN02822 serine palmitoyltransferase
Probab=23.00 E-value=3.4e+02 Score=23.15 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEecc
Q psy9810 28 QEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKT 68 (154)
Q Consensus 28 ~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~~ 68 (154)
.++.++..++.++|.+.|++.+++++..++..+++.++...
T Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~ 407 (481)
T PLN02822 367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEK 407 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCC
Confidence 56788888999999999998888988777778888888753
No 160
>KOG2790|consensus
Probab=22.90 E-value=1.4e+02 Score=24.43 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEc-ccc---eeeEEEEeccc
Q psy9810 26 YLQEYIRKQISLAKEFEQLVRSDDRFEVIY-EVL---MGLVCFRLKTA 69 (154)
Q Consensus 26 g~~~~i~~~~~~a~~~~~~i~~~~~~el~~-~p~---l~~v~Fr~~~~ 69 (154)
|+.++-..+.+-++.+++.|+++.+|..+. +|. .-.||||..++
T Consensus 268 Gl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d 315 (370)
T KOG2790|consen 268 GLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD 315 (370)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecch
Confidence 455566677889999999999998987642 332 23589999864
No 161
>PLN02242 methionine gamma-lyase
Probab=22.45 E-value=1.4e+02 Score=24.91 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEc
Q psy9810 11 RSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY 55 (154)
Q Consensus 11 ~alk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~ 55 (154)
.....|+.+ +|.+-+..++++..++|.++++.|++++ +++..
T Consensus 262 ~~~~A~l~~--~~l~tl~~r~~~~~~~a~~la~~L~~~~-~~V~y 303 (418)
T PLN02242 262 NPKVAFELS--ERLPHLSLRMKEHCRRAMEYAKRMKELG-LKVIY 303 (418)
T ss_pred CHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHhCC-CEEEC
Confidence 334445444 4556778888999999999999999984 66543
No 162
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=22.20 E-value=87 Score=20.44 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=19.6
Q ss_pred HHhcCCCeE--EEcccceeeEEEEecc
Q psy9810 44 LVRSDDRFE--VIYEVLMGLVCFRLKT 68 (154)
Q Consensus 44 ~i~~~~~~e--l~~~p~l~~v~Fr~~~ 68 (154)
.|...+||+ .+.+|+..|++||-.-
T Consensus 45 GIqqS~GW~Hy~~h~pEphILlFrRp~ 71 (86)
T PLN00010 45 GVQQSRGWVHYAIHRPEPHIMLFRRPL 71 (86)
T ss_pred ccccCCCcEEeeecCCCceEEEEEccC
Confidence 456678876 5789999999999744
No 163
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=21.62 E-value=2.5e+02 Score=22.34 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccceeeEEEEec
Q psy9810 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67 (154)
Q Consensus 15 ~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~l~~v~Fr~~ 67 (154)
+..+++.+.. . .++.++..++.+++.+.+++. ++++ .+|..++++|...
T Consensus 279 ~~aal~~~~~-~-~~~~~~~~~~~~~l~~~L~~~-~~~~-~~~~~~~~~~~~~ 327 (385)
T PRK05958 279 ARAALRILRR-E-PERRERLAALIARLRAGLRAL-GFQL-MDSQSAIQPLIVG 327 (385)
T ss_pred HHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHc-CCCc-CCCCCCEEEEEeC
Confidence 3344444422 1 567788888999999999875 5774 4567778888764
No 164
>PRK14012 cysteine desulfurase; Provisional
Probab=21.52 E-value=3.9e+02 Score=21.77 Aligned_cols=45 Identities=7% Similarity=-0.101 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc-----cceeeEEEEecc
Q psy9810 24 VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE-----VLMGLVCFRLKT 68 (154)
Q Consensus 24 ~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~-----p~l~~v~Fr~~~ 68 (154)
..++.+..++...+++++.+.|+..|++.+..+ |....++|...+
T Consensus 260 ~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 309 (404)
T PRK14012 260 KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVE 309 (404)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcC
Confidence 345667778889999999999999898887643 223356777644
No 165
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=21.34 E-value=1.8e+02 Score=24.62 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=35.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcc---cceeeEEEE
Q psy9810 17 FVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYE---VLMGLVCFR 65 (154)
Q Consensus 17 ~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~---p~l~~v~Fr 65 (154)
.+++.--.-+|++...+.+++|+.|++.+.+. +|.++.. .-+-+|-.|
T Consensus 272 Va~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~ 322 (413)
T COG0112 272 VAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLR 322 (413)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcc
Confidence 35555566788888888999999999999985 9998863 233344444
No 166
>KOG0056|consensus
Probab=21.03 E-value=2.7e+02 Score=24.80 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEccc------------ceeeEEEEecccccccc
Q psy9810 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEV------------LMGLVCFRLKTAKVGLR 74 (154)
Q Consensus 13 lk~w~~l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p------------~l~~v~Fr~~~~~~~~~ 74 (154)
+.+++-|..+|. |=+.|.+++-=.+.+-+.+++.|. ++..| +++.|.|-|.|....++
T Consensus 486 iqLy~PLN~FGT--~YR~iQ~nfiDmEnmfdllkee~e--Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~ 555 (790)
T KOG0056|consen 486 IQLYMPLNFFGT--YYRSIQKNFIDMENMFDLLKEEPE--VVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLS 555 (790)
T ss_pred HHHhCchHHHHH--HHHHHHHhhhhHHHHHHHhhcCch--hhcCCCCCCccccCCeEEEEEeEEecCCCCceee
Confidence 457788888886 334555555556777788887653 33322 57889999988754444
No 167
>PTZ00453 cyclin-dependent kinase; Provisional
Probab=20.83 E-value=94 Score=20.69 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHhcCCCeE--EEcccceeeEEEEec
Q psy9810 44 LVRSDDRFE--VIYEVLMGLVCFRLK 67 (154)
Q Consensus 44 ~i~~~~~~e--l~~~p~l~~v~Fr~~ 67 (154)
.|+..+||+ .+.+|+..|+.||-+
T Consensus 69 GIqqS~GW~HY~~h~pEphILLFRRp 94 (96)
T PTZ00453 69 GVQQSVGWRHYMIHKPEPHVLLFKRP 94 (96)
T ss_pred hhccCCCcEEeeecCCCCcEEEEecC
Confidence 466778877 578999999999863
No 168
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=20.54 E-value=2.2e+02 Score=25.12 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEcccc
Q psy9810 19 LRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL 58 (154)
Q Consensus 19 l~~~G~~g~~~~i~~~~~~a~~~~~~i~~~~~~el~~~p~ 58 (154)
+...|+.-+++.+++.++..+.+.+.+++.+.|+++.++.
T Consensus 283 ~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~ 322 (557)
T COG1982 283 EGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEK 322 (557)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 4456777777779999999999999999999999988775
Done!