RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9810
(154 letters)
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 119 bits (299), Expect = 1e-32
Identities = 44/67 (65%), Positives = 53/67 (79%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
HWQIPLGRRFR+LKLWFVLRL GV+ LQ +IR+ + AK+F L +D RFE+ E+ MG
Sbjct: 345 HWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMG 404
Query: 61 LVCFRLK 67
LVCFRLK
Sbjct: 405 LVCFRLK 411
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 118 bits (298), Expect = 2e-32
Identities = 40/67 (59%), Positives = 49/67 (73%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
HWQIPL RRFRS+KLWFV+R GVK LQ ++R +AK FE LVR+D FE+ + +G
Sbjct: 352 HWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLG 411
Query: 61 LVCFRLK 67
LV FRLK
Sbjct: 412 LVVFRLK 418
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 118 bits (298), Expect = 2e-32
Identities = 46/67 (68%), Positives = 52/67 (77%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
HWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE V D RFEV EV +G
Sbjct: 348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG 407
Query: 61 LVCFRLK 67
LVCFRLK
Sbjct: 408 LVCFRLK 414
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 113 bits (284), Expect = 2e-30
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
I +RF +LK++ ++ +G K L + ++ E ++R++D+FE++ E +
Sbjct: 366 DKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS 425
Query: 61 LVCFRLK 67
V FR
Sbjct: 426 TVLFRAT 432
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 110 bits (276), Expect = 3e-29
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
+ GRR LKLW + + G + L+ I + LA+ + ++ + FE++ E
Sbjct: 373 DKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFV 432
Query: 61 LVCFRLK 67
VCF
Sbjct: 433 NVCFWFV 439
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 108 bits (271), Expect = 2e-28
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIY--EVL 58
I GR K W + + G + I K + LA+ +++ + FE+++ E
Sbjct: 358 DKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPE 417
Query: 59 MGLVCFRLK 67
VCF
Sbjct: 418 HTNVCFWYI 426
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 46.0 bits (109), Expect = 1e-06
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 8 RRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSD-DRFEVIYEVLMGLVCFRL 66
+ W + +G E ++ + A +F++ ++ + +++ ++ F
Sbjct: 324 PGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISFSS 383
Query: 67 KTAKV-----GLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAK 107
KT + L K + L P AL + V
Sbjct: 384 KTLNIHELSDRLSKKGW--HFNALQKPVALH---MAFTRLSAHVVD 424
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 42.6 bits (100), Expect = 1e-05
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 8 RRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFR 65
S W + LG + + R+ + A + VR+ +++ + L ++
Sbjct: 356 PGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVA 412
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 6e-05
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 17/129 (13%)
Query: 22 LGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRKFDYENF 81
K +Q+ + +S +E + ++ S D + K ++ + F
Sbjct: 33 FDCKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRL---FWTLLSKQEEM------VQKF 82
Query: 82 LCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVTTGQARLTFWDNAIDKLYTDQVPAHP 141
+ +L N F++ E + + RL N V
Sbjct: 83 VEEVLRI----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQ 135
Query: 142 VVQELNKVI 150
+L + +
Sbjct: 136 PYLKLRQAL 144
Score = 30.6 bits (68), Expect = 0.19
Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 40/152 (26%)
Query: 1 HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
W + L + +L+ L Q + + +
Sbjct: 185 FW-LNLKNCNSPETVLEMLQKL---LYQ--------IDPNWTSRSDHSSNIK-------- 224
Query: 61 LVCFRLKTAKVGLRKF----DYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVSDVT 116
R+ + + LR+ YEN C L+L +QNA AFN+ K+ +T
Sbjct: 225 ---LRIHSIQAELRRLLKSKPYEN--CLLVL-LNVQNAK-AWNAFNLS-CKIL-----LT 271
Query: 117 TGQARLTFWDNAIDKLYTDQVPAHPVVQELNK 148
T ++T + + T + L
Sbjct: 272 TRFKQVT---DFLSAATTTHISLDHHSMTLTP 300
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 40.0 bits (93), Expect = 1e-04
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 7 GRRFRS--LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRS-----DDRFEVIYEVLM 59
GR + + L +G K E ++ Q + K ++L+ +F + +
Sbjct: 326 GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIA 385
Query: 60 GLVCFRLKTAKVGLRKFD 77
+ ++ + ++
Sbjct: 386 SCISVNSDPVEIAAKLYN 403
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 37.0 bits (85), Expect = 0.002
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVL-MGLVCFRLKTAKV 71
+ ++ L LG + + + + + +RF ++ + + LV F LK +
Sbjct: 326 IAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC 385
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 36.6 bits (85), Expect = 0.002
Identities = 8/55 (14%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 13 LKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLK 67
+ VLR LG + ++ + + + + ++ ++ F+ + E ++ +V +
Sbjct: 293 ACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDE 346
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 31.5 bits (71), Expect = 0.097
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 15 LWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVI----YEVLMGLVCFRLKTAK 70
++ LG + + +A + +E I + + VCF+LK +
Sbjct: 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGE 372
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.16
Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 19 LRLLGVKY---LQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRK 75
LR L Y + + I+ A+ +L+R+ E ++ + ++ + L+
Sbjct: 173 LRDLYQTYHVLVGDLIK---FSAETLSELIRTTLDAEKVFTQGLNILEW-LENPS---NT 225
Query: 76 FDYENFLCTLL--LP--KALQNASFVI--RAFNIEVAKVQDNVSDVTT-GQARLT----- 123
D +++L ++ P +Q A +V+ + +++ + T Q +T
Sbjct: 226 PD-KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 124 -------FWDNAIDKL 132
F+ + +
Sbjct: 285 ETDSWESFFVSVRKAI 300
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis,
staphyloxanthin biosynthesis, transferase, head-TO-head
condensation, inhibitor; HET: 673; 1.31A {Staphylococcus
aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*
3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A*
3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A*
4e9u_A* ...
Length = 293
Score = 30.0 bits (68), Expect = 0.26
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 78 YENF-LCTLLLPKALQNASFVIRAF---NIEVAKVQDNVSDVTTGQARLTFWDNAIDKLY 133
++F LLP+ + A + I A + V ++ + + + + + +
Sbjct: 25 SKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYH 84
Query: 134 TDQVPAHPVVQELNKVI 150
++ L V
Sbjct: 85 -HFQSDRRIMMALQHVA 100
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 0.29
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 28/120 (23%)
Query: 24 VKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGLVCFRLKTAKVGLRK---FDYEN 80
V Y E K+ S+ + + V R + L K +K YE
Sbjct: 122 VNYSSE--VKENSVDSDDKAKVPPLIRI-------VS--GLELSDTKQKGKKFLVIAYEP 170
Query: 81 FLCTLLLPKALQNASFVIRAFNIEVAK---VQDNVSDVTTGQARLTFWDNAIDKLYTDQV 137
F +N + + I ++ + +N V + TFWD I KLY Q
Sbjct: 171 F----------ENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDA-ISKLYYVQF 219
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 26.0 bits (58), Expect = 4.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 35 ISLAKEFEQLVRSDDRFEVIY 55
I L E + + + F+V Y
Sbjct: 160 ILLRTELDDMAKKYSNFKVYY 180
>3e0e_A Replication protein A; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Methanococcus maripaludis} PDB:
2k5v_A
Length = 97
Score = 24.9 bits (54), Expect = 8.1
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 117 TGQARLTFWDNAID 130
TG R T W+ D
Sbjct: 48 TGSIRGTLWNELAD 61
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 25.4 bits (56), Expect = 8.7
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 44 LVRSDDRFEVIYEVLMG--LVCFRLKTAKVGLRKFDY 78
+R + RF+ ++ + G L+C ++ + R F
Sbjct: 129 KLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTM 165
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI,
protein structure initiative; 1.90A {Vibrio cholerae}
Length = 361
Score = 25.3 bits (56), Expect = 8.8
Identities = 5/16 (31%), Positives = 12/16 (75%)
Query: 41 FEQLVRSDDRFEVIYE 56
F + +R+ DRF+++ +
Sbjct: 138 FSRSLRAGDRFDILVK 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.422
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,334,452
Number of extensions: 127422
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 31
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)