RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9810
         (154 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 76.4 bits (187), Expect = 9e-18
 Identities = 46/67 (68%), Positives = 52/67 (77%)

Query: 1   HWQIPLGRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMG 60
           HWQ+PLGRRFRSLK+WFV R+ GVK LQ YIRK + L+ EFE  V  D RFEV  EV +G
Sbjct: 348 HWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLG 407

Query: 61  LVCFRLK 67
           LVCFRLK
Sbjct: 408 LVCFRLK 414


>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 333

 Score = 27.7 bits (61), Expect = 0.54
 Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 66  LKTAKVGLRKFDYENFLCTLLLPKALQNASFVIRAFNIEVAKVQDNVS-DVTTGQARLTF 124
           LKT    L +           L   ++NA  +       +  ++D+++  V      L  
Sbjct: 3   LKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHN 62

Query: 125 WDNAIDKLYTDQVPA----HPVVQELNKVI 150
           + + + +     + +      V+++   + 
Sbjct: 63  FHSFLYQPDWRFMESKEKDRQVLEDFPTIS 92


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 26.3 bits (57), Expect = 1.8
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 13/91 (14%)

Query: 7    GRRFRSLKLWFVLRLLGVKYLQEYIRKQISLAKEFEQLVRSDDR-FEVIYEVLMGLVCFR 65
              R  +     ++ +LG++  +  + K++            + R   ++ +V+       
Sbjct: 1323 PTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS-DGSYVNYRHMALLVDVM------- 1374

Query: 66   LKTAKVGLRKFDYENFLCTLLLPKALQNASF 96
              T + GL       F        AL   SF
Sbjct: 1375 --TTQGGLTSVTRHGF--NRSNTGALMRCSF 1401


>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 6/37 (16%), Positives = 19/37 (51%)

Query: 25  KYLQEYIRKQISLAKEFEQLVRSDDRFEVIYEVLMGL 61
           + +++Y +  ++LA+ +      D  F+ + +   G+
Sbjct: 83  EAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGV 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.422 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 565,246
Number of extensions: 24402
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 11
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.0 bits)