BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9815
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 93.6 bits (231), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
HP+W + I+ LVGYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+
Sbjct: 171 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDV 229
Query: 62 KKGKIPFY 69
+G IPFY
Sbjct: 230 AEGLIPFY 237
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 82.0 bits (201), Expect = 7e-17, Method: Composition-based stats.
Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
+ PD +S + A LV Y SDQAHSSVE+AGL+ V ++ LP DD++ LRG+AL+ AIEED
Sbjct: 176 SEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEED 235
Query: 61 LKKGKIPFYV 70
++G +P +V
Sbjct: 236 KQRGLVPVFV 245
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 56 AIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKG 115
A E L + + +QAHSSVE+AGL+ V ++ LP DD++ LRG+AL+ AIEED ++G
Sbjct: 180 ADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRG 239
Query: 116 KIP 118
+P
Sbjct: 240 LVP 242
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
A P+ + I+ LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R AL+ A+E D
Sbjct: 170 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 229
Query: 61 LKKGKIPFYV 70
G IPF++
Sbjct: 230 KAAGLIPFFM 239
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 54 EAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113
+AAI E L + + +QAHSSVERAGL+GGV ++ +P+D ++ +R AL+ A+E D
Sbjct: 176 QAAIMEKL----VAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA 231
Query: 114 KGKIPF 119
G IPF
Sbjct: 232 AGLIPF 237
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 78.6 bits (192), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
A P+ + I+ LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R AL+ A+E D
Sbjct: 170 ASPELTQAAIMEKLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERD 229
Query: 61 LKKGKIPFYV 70
G IPF++
Sbjct: 230 KAAGLIPFFM 239
Score = 65.9 bits (159), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 54 EAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113
+AAI E L + + +QAHSSVERAGL+GGV ++ +P+D ++ +R AL+ A+E D
Sbjct: 176 QAAIMEKL----VAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKA 231
Query: 114 KGKIPF 119
G IPF
Sbjct: 232 AGLIPF 237
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 77.4 bits (189), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
A P ++ LV Y SDQAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229
Query: 61 LKKGKIPFYV 70
G IPF+V
Sbjct: 230 KAAGLIPFFV 239
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
+ + +QAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D G IPF
Sbjct: 184 VAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 11 IANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIP 67
+ LV + S+Q+H S+++AG G + + ++ K+ EA I E +KG +P
Sbjct: 190 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVP 249
Query: 68 FYVN 71
FYVN
Sbjct: 250 FYVN 253
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 11 IANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIP 67
+ LV + S+Q+H S+++AG G + + ++ K+ EA I E +KG +P
Sbjct: 187 VPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVP 246
Query: 68 FYVN 71
FYVN
Sbjct: 247 FYVN 250
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 5 WKDSDIIANLVGYCSDQAHSSVERA 29
W +++ +V Y D +HS VE+A
Sbjct: 10 WSQTNLTYRIVNYTPDMSHSEVEKA 34
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 2 HPDWKDSDI--IANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAA 56
+PD K + + L + S + H S+++ LG ++R + AD+ K+ + LE
Sbjct: 190 YPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQ 249
Query: 57 IEEDLKKGKIPFYVN 71
I +G +PF V+
Sbjct: 250 IGMAEAEGAVPFLVS 264
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 3 PDWKDSDIIA--NLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAI 57
P+ K+ + A L+ + S+ +H S+++ G+ ++ + D+ K+ LE I
Sbjct: 173 PEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRI 232
Query: 58 EEDLKKGKIPFYVN 71
E +KG +PF V+
Sbjct: 233 LEAKQKGFVPFLVS 246
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLG 84
G+ ++ + +AL A+E D G + A S VER LLG
Sbjct: 146 GMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191
>pdb|1SXH|A Chain A, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXH|D Chain D, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXI|A Chain A, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|D Chain D, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|B Chain B, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|I Chain I, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|R Chain R, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|T Chain T, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|L Chain L, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|K Chain K, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|W Chain W, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|G Chain G, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|N Chain N, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|M Chain M, Structure Of Apo Transcription Regulator B. Megaterium
Length = 280
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 128 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 187
Query: 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRG 101
I +V ++ G++ G RGL + ++ G
Sbjct: 188 PTAI--FVGTDEXAL---GVIHGAQDRGLNVPNDLEIIG 221
>pdb|1RZR|D Chain D, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
Length = 332
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 180 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 239
Query: 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRG 101
I +V ++ G++ G RGL + ++ G
Sbjct: 240 PTAI--FVGTDEXAL---GVIHGAQDRGLNVPNDLEIIG 273
>pdb|1RZR|G Chain G, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
pdb|1RZR|C Chain C, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
pdb|1RZR|A Chain A, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
Length = 332
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 180 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 239
Query: 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRG 101
I +V ++ G++ G RGL + ++ G
Sbjct: 240 PTAI--FVGTDEXAL---GVIHGAQDRGLNVPNDLEIIG 273
>pdb|1SXG|A Chain A, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|D Chain D, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|B Chain B, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|I Chain I, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|P Chain P, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|F Chain F, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|2NZU|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2NZV|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2OEN|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors Glucose-6-Phosphate And
Fructose-1,6-Bisphosphate
Length = 280
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 128 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 187
Query: 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRG 101
I +V ++ G++ G RGL + ++ G
Sbjct: 188 PTAI--FVGTDEMAL---GVIHGAQDRGLNVPNDLEIIG 221
>pdb|2HSG|A Chain A, Structure Of Transcription Regulator Ccpa In Its Dna-Free
State
Length = 332
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 180 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 239
Query: 63 KGKI 66
I
Sbjct: 240 PTAI 243
>pdb|1ZVV|A Chain A, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|1ZVV|B Chain B, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|1ZVV|G Chain G, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|2JCG|A Chain A, Apo Form Of The Catabolite Control Protein A (Ccpa) From
Bacillus Megaterium, With The Dna Binding Domain
Length = 332
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGD--------ALEAAIEEDLK 62
IA + G + + + + G +T GLP DSY + GD A+E +EED K
Sbjct: 180 IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEK 239
Query: 63 KGKI 66
I
Sbjct: 240 PTAI 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,726,272
Number of Sequences: 62578
Number of extensions: 142948
Number of successful extensions: 295
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 35
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)