Query psy9815
Match_columns 119
No_of_seqs 197 out of 1446
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:23:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0628|consensus 99.8 4.5E-19 9.8E-24 141.2 5.6 81 2-82 171-251 (511)
2 KOG0629|consensus 99.7 1.7E-17 3.8E-22 131.4 5.2 81 2-82 184-269 (510)
3 KOG0628|consensus 99.7 1.5E-17 3.3E-22 132.5 3.9 115 1-119 107-237 (511)
4 PLN02590 probable tyrosine dec 99.6 7.6E-16 1.7E-20 126.4 5.5 72 11-82 227-303 (539)
5 PF00282 Pyridoxal_deC: Pyrido 99.6 1.1E-15 2.4E-20 120.5 4.7 72 11-82 139-210 (373)
6 PLN02880 tyrosine decarboxylas 99.6 2.9E-15 6.2E-20 121.8 5.5 72 11-82 179-255 (490)
7 TIGR03811 tyr_de_CO2_Ent tyros 99.4 9E-14 1.9E-18 115.6 5.4 68 15-82 224-294 (608)
8 PLN02263 serine decarboxylase 99.4 1.2E-13 2.6E-18 111.9 4.3 69 10-81 175-243 (470)
9 TIGR03799 NOD_PanD_pyr putativ 99.3 3E-12 6.5E-17 105.1 5.4 71 12-82 208-281 (522)
10 PF00282 Pyridoxal_deC: Pyrido 99.0 1.1E-09 2.3E-14 86.6 6.4 56 64-119 141-196 (373)
11 PLN02590 probable tyrosine dec 99.0 8.5E-10 1.8E-14 91.0 5.8 56 64-119 229-289 (539)
12 KOG0629|consensus 98.9 2.5E-09 5.5E-14 85.4 5.5 56 64-119 197-255 (510)
13 COG0076 GadB Glutamate decarbo 98.9 1.1E-09 2.4E-14 88.8 3.4 64 14-81 158-222 (460)
14 PLN02880 tyrosine decarboxylas 98.9 3.1E-09 6.7E-14 86.7 5.8 56 64-119 181-241 (490)
15 PRK02769 histidine decarboxyla 98.8 3.6E-09 7.9E-14 83.8 3.9 70 10-82 107-176 (380)
16 PLN03032 serine decarboxylase; 98.8 3.5E-09 7.6E-14 83.9 3.6 67 13-82 111-177 (374)
17 TIGR03811 tyr_de_CO2_Ent tyros 98.6 4.8E-08 1E-12 81.7 5.7 54 66-119 224-280 (608)
18 TIGR01788 Glu-decarb-GAD gluta 98.6 3.8E-08 8.3E-13 79.3 3.5 64 13-82 138-202 (431)
19 PLN02263 serine decarboxylase 98.5 2.5E-07 5.4E-12 75.4 5.5 49 64-112 178-226 (470)
20 TIGR03799 NOD_PanD_pyr putativ 98.5 3.3E-07 7.1E-12 75.5 6.1 56 64-119 209-267 (522)
21 cd06450 DOPA_deC_like DOPA dec 98.0 7.4E-06 1.6E-10 62.7 4.9 69 13-81 95-163 (345)
22 COG0076 GadB Glutamate decarbo 97.7 5.3E-05 1.2E-09 61.7 4.8 50 66-115 159-209 (460)
23 PLN03032 serine decarboxylase; 97.5 0.00025 5.5E-09 56.4 5.7 47 65-111 112-158 (374)
24 PRK02769 histidine decarboxyla 97.4 0.00036 7.8E-09 55.5 5.8 50 62-111 108-157 (380)
25 TIGR00461 gcvP glycine dehydro 97.2 0.00067 1.5E-08 59.5 5.6 63 12-77 577-639 (939)
26 PRK05367 glycine dehydrogenase 97.1 0.00072 1.6E-08 59.6 4.5 64 12-78 589-652 (954)
27 cd06450 DOPA_deC_like DOPA dec 97.0 0.0021 4.5E-08 49.2 5.8 54 65-118 96-149 (345)
28 TIGR01788 Glu-decarb-GAD gluta 97.0 0.0011 2.3E-08 53.7 4.3 47 65-111 139-186 (431)
29 COG1003 GcvP Glycine cleavage 96.8 0.0047 1E-07 50.2 6.5 80 32-111 121-204 (496)
30 PRK13520 L-tyrosine decarboxyl 96.8 0.0019 4.2E-08 49.8 4.3 47 13-59 104-150 (371)
31 TIGR03531 selenium_SpcS O-phos 96.6 0.0064 1.4E-07 49.5 6.2 47 12-59 151-200 (444)
32 TIGR00461 gcvP glycine dehydro 96.0 0.013 2.9E-07 51.6 5.2 47 64-110 578-624 (939)
33 PLN02414 glycine dehydrogenase 95.8 0.013 2.8E-07 52.0 4.5 47 13-59 616-662 (993)
34 TIGR03812 tyr_de_CO2_Arch tyro 95.7 0.013 2.8E-07 45.3 3.7 45 15-59 108-152 (373)
35 PRK05367 glycine dehydrogenase 95.6 0.024 5.3E-07 50.2 5.3 46 65-110 591-636 (954)
36 TIGR03531 selenium_SpcS O-phos 95.2 0.048 1E-06 44.5 5.6 47 64-110 151-200 (444)
37 PLN02414 glycine dehydrogenase 95.0 0.14 3E-06 45.7 8.2 45 66-110 618-662 (993)
38 PRK13520 L-tyrosine decarboxyl 94.8 0.14 3.1E-06 39.4 7.0 47 64-110 104-150 (371)
39 KOG2040|consensus 94.4 0.25 5.5E-06 42.6 7.9 49 65-113 631-679 (1001)
40 cd06452 SepCysS Sep-tRNA:Cys-t 94.0 0.23 5.1E-06 38.5 6.6 46 15-60 85-132 (361)
41 cd06452 SepCysS Sep-tRNA:Cys-t 93.9 0.54 1.2E-05 36.4 8.6 61 51-111 70-132 (361)
42 COG1003 GcvP Glycine cleavage 93.8 0.087 1.9E-06 43.1 3.9 48 12-59 156-203 (496)
43 PRK09331 Sep-tRNA:Cys-tRNA syn 93.7 0.24 5.2E-06 39.0 6.3 46 15-60 104-151 (387)
44 TIGR03812 tyr_de_CO2_Arch tyro 93.3 0.19 4.2E-06 38.7 5.1 47 64-110 106-152 (373)
45 KOG0630|consensus 93.2 0.23 5.1E-06 41.6 5.6 73 11-83 229-309 (838)
46 PRK09331 Sep-tRNA:Cys-tRNA syn 92.7 0.56 1.2E-05 36.9 7.0 78 29-111 72-151 (387)
47 cd06453 SufS_like Cysteine des 91.8 0.63 1.4E-05 35.9 6.2 59 52-110 73-138 (373)
48 KOG1383|consensus 91.7 0.068 1.5E-06 43.8 0.7 48 13-60 170-218 (491)
49 PRK04366 glycine dehydrogenase 91.6 0.37 8.1E-06 39.4 5.0 45 66-110 163-207 (481)
50 PRK12566 glycine dehydrogenase 91.5 0.32 6.9E-06 43.3 4.7 48 12-59 590-637 (954)
51 TIGR02539 SepCysS Sep-tRNA:Cys 91.5 1.5 3.3E-05 34.2 8.1 84 22-110 53-138 (370)
52 COG1104 NifS Cysteine sulfinat 91.3 0.67 1.5E-05 37.3 6.0 49 63-111 90-141 (386)
53 PRK04366 glycine dehydrogenase 91.2 0.37 8.1E-06 39.4 4.6 46 14-59 162-207 (481)
54 PRK14012 cysteine desulfurase; 91.2 1 2.2E-05 35.6 6.9 49 62-110 92-143 (404)
55 PF01041 DegT_DnrJ_EryC1: DegT 91.1 0.9 2E-05 35.5 6.5 61 51-111 51-113 (363)
56 cd06453 SufS_like Cysteine des 91.0 0.48 1E-05 36.6 4.8 46 14-59 89-138 (373)
57 PLN02721 threonine aldolase 91.0 0.37 8E-06 36.8 4.1 45 15-59 82-129 (353)
58 PRK14012 cysteine desulfurase; 90.9 0.23 5E-06 39.2 3.0 45 15-59 96-143 (404)
59 TIGR02539 SepCysS Sep-tRNA:Cys 90.1 1.2 2.7E-05 34.7 6.4 45 15-59 92-138 (370)
60 PRK00451 glycine dehydrogenase 90.0 1.3 2.9E-05 35.3 6.7 48 62-110 152-203 (447)
61 PRK12566 glycine dehydrogenase 89.7 0.62 1.3E-05 41.5 4.8 45 65-109 592-636 (954)
62 cd06451 AGAT_like Alanine-glyo 89.1 1.9 4.1E-05 33.1 6.7 60 51-110 61-122 (356)
63 COG1104 NifS Cysteine sulfinat 88.5 0.51 1.1E-05 38.0 3.3 46 15-60 93-141 (386)
64 cd00613 GDC-P Glycine cleavage 88.4 2 4.3E-05 33.5 6.5 47 64-110 108-158 (398)
65 PF01212 Beta_elim_lyase: Beta 88.0 0.6 1.3E-05 35.9 3.3 48 14-61 69-119 (290)
66 COG1103 Archaea-specific pyrid 87.6 5.1 0.00011 31.5 8.0 54 62-115 98-153 (382)
67 PRK04870 histidinol-phosphate 87.6 2.2 4.9E-05 32.9 6.3 59 52-110 93-151 (356)
68 TIGR02006 IscS cysteine desulf 87.5 1.5 3.1E-05 34.7 5.3 45 14-58 93-140 (402)
69 COG1103 Archaea-specific pyrid 87.4 2 4.4E-05 33.6 5.8 49 16-64 103-153 (382)
70 PRK14807 histidinol-phosphate 87.3 3.1 6.7E-05 32.1 6.9 59 52-110 88-146 (351)
71 TIGR02006 IscS cysteine desulf 86.9 2.8 6E-05 33.1 6.6 48 63-110 91-141 (402)
72 PRK15481 transcriptional regul 86.8 2.8 6.1E-05 33.4 6.6 59 51-110 152-210 (431)
73 cd00616 AHBA_syn 3-amino-5-hyd 86.8 2.3 4.9E-05 32.4 5.9 59 51-109 44-104 (352)
74 TIGR02379 ECA_wecE TDP-4-keto- 86.7 2.5 5.5E-05 33.4 6.2 60 51-110 57-118 (376)
75 PRK11658 UDP-4-amino-4-deoxy-L 86.4 2.6 5.6E-05 33.2 6.1 78 28-110 41-120 (379)
76 PLN02721 threonine aldolase 86.3 2.5 5.3E-05 32.2 5.8 48 63-110 79-129 (353)
77 PF00155 Aminotran_1_2: Aminot 85.9 4.6 9.9E-05 30.9 7.2 52 13-64 93-146 (363)
78 TIGR03402 FeS_nifS cysteine de 85.9 3 6.5E-05 32.4 6.2 47 64-110 86-135 (379)
79 PRK05166 histidinol-phosphate 85.6 3.5 7.5E-05 32.1 6.5 58 53-110 101-158 (371)
80 PRK00451 glycine dehydrogenase 85.3 1.3 2.9E-05 35.3 4.1 45 13-58 154-202 (447)
81 TIGR03588 PseC UDP-4-keto-6-de 85.0 3.7 8E-05 32.1 6.3 60 51-110 55-116 (380)
82 TIGR01979 sufS cysteine desulf 84.9 1.2 2.6E-05 34.9 3.6 46 14-59 109-158 (403)
83 PF01041 DegT_DnrJ_EryC1: DegT 84.9 1.9 4.2E-05 33.6 4.7 47 13-59 65-112 (363)
84 PF06506 PrpR_N: Propionate ca 84.9 9.4 0.0002 26.9 7.9 86 12-111 78-163 (176)
85 PRK11706 TDP-4-oxo-6-deoxy-D-g 84.4 3.9 8.5E-05 32.0 6.3 49 62-110 69-118 (375)
86 cd00609 AAT_like Aspartate ami 84.4 2.2 4.9E-05 31.9 4.8 37 14-50 84-120 (350)
87 PRK06836 aspartate aminotransf 84.3 4.4 9.5E-05 31.9 6.5 60 51-110 107-167 (394)
88 PRK13479 2-aminoethylphosphona 84.2 5.8 0.00013 30.6 7.1 60 51-110 67-128 (368)
89 cd00616 AHBA_syn 3-amino-5-hyd 84.0 2.8 6.1E-05 31.9 5.2 44 15-58 60-104 (352)
90 TIGR01977 am_tr_V_EF2568 cyste 84.0 3.7 8E-05 31.6 5.9 60 51-110 73-136 (376)
91 PRK01688 histidinol-phosphate 83.9 4.4 9.5E-05 31.4 6.3 57 52-108 86-143 (351)
92 cd06502 TA_like Low-specificit 83.8 1.5 3.3E-05 33.2 3.6 44 15-59 73-119 (338)
93 PF00155 Aminotran_1_2: Aminot 83.7 4.3 9.4E-05 31.0 6.2 53 63-115 92-146 (363)
94 PLN02651 cysteine desulfurase 83.5 3.7 8E-05 31.8 5.7 49 62-110 86-137 (364)
95 PRK08361 aspartate aminotransf 83.5 4.1 8.8E-05 31.9 6.0 60 51-110 104-165 (391)
96 TIGR03402 FeS_nifS cysteine de 83.3 2.8 6.2E-05 32.5 5.0 45 14-58 87-134 (379)
97 PRK12414 putative aminotransfe 83.1 5 0.00011 31.5 6.4 60 51-110 101-161 (384)
98 PTZ00377 alanine aminotransfer 82.5 9.3 0.0002 31.1 7.9 62 52-113 150-214 (481)
99 PRK05957 aspartate aminotransf 82.5 5.9 0.00013 31.1 6.6 59 52-110 101-159 (389)
100 PRK00950 histidinol-phosphate 82.5 6 0.00013 30.4 6.5 48 62-109 109-156 (361)
101 TIGR03588 PseC UDP-4-keto-6-de 82.4 3.3 7.2E-05 32.3 5.1 44 15-58 71-115 (380)
102 TIGR01979 sufS cysteine desulf 82.3 5.2 0.00011 31.2 6.2 49 62-110 106-158 (403)
103 cd06502 TA_like Low-specificit 81.9 3.2 6.8E-05 31.4 4.7 58 52-110 59-119 (338)
104 TIGR02326 transamin_PhnW 2-ami 81.9 7.6 0.00017 29.9 6.9 60 51-110 65-126 (363)
105 PRK02948 cysteine desulfurase; 81.8 6.7 0.00014 30.5 6.6 48 63-110 87-137 (381)
106 cd00615 Orn_deC_like Ornithine 81.7 7.7 0.00017 29.3 6.8 80 27-110 66-151 (294)
107 PLN02368 alanine transaminase 81.2 12 0.00027 29.9 8.1 61 52-112 142-205 (407)
108 PRK09082 methionine aminotrans 81.2 7 0.00015 30.6 6.6 60 51-110 102-162 (386)
109 PRK07309 aromatic amino acid a 81.1 7.8 0.00017 30.4 6.8 59 52-110 103-162 (391)
110 cd06451 AGAT_like Alanine-glyo 80.8 3.2 6.8E-05 31.8 4.4 44 16-59 77-122 (356)
111 PLN03026 histidinol-phosphate 80.2 8.3 0.00018 30.3 6.7 48 62-109 125-172 (380)
112 PF00266 Aminotran_5: Aminotra 80.1 8.8 0.00019 29.7 6.8 58 52-109 73-137 (371)
113 PRK11706 TDP-4-oxo-6-deoxy-D-g 79.9 4 8.7E-05 32.0 4.8 44 15-58 73-117 (375)
114 PLN02651 cysteine desulfurase 79.8 4.6 0.0001 31.3 5.1 46 14-59 89-137 (364)
115 PRK02948 cysteine desulfurase; 79.4 4.9 0.00011 31.2 5.2 45 14-58 89-136 (381)
116 TIGR02326 transamin_PhnW 2-ami 79.1 5 0.00011 30.9 5.1 45 15-59 81-126 (363)
117 COG1167 ARO8 Transcriptional r 79.1 5.4 0.00012 32.5 5.5 46 14-60 180-225 (459)
118 TIGR01141 hisC histidinol-phos 79.1 7.9 0.00017 29.5 6.2 48 62-109 93-140 (346)
119 cd00609 AAT_like Aspartate ami 78.8 7.8 0.00017 29.0 6.0 57 51-107 70-128 (350)
120 PRK03317 histidinol-phosphate 78.7 9.3 0.0002 29.6 6.5 60 51-110 99-158 (368)
121 TIGR03392 FeS_syn_CsdA cystein 78.3 7.9 0.00017 30.3 6.0 49 62-110 104-156 (398)
122 PTZ00376 aspartate aminotransf 78.1 19 0.00042 28.4 8.2 45 16-60 127-173 (404)
123 PLN02376 1-aminocyclopropane-1 77.8 16 0.00034 30.2 7.8 63 51-113 130-195 (496)
124 PRK06108 aspartate aminotransf 77.7 11 0.00025 29.0 6.7 59 51-109 95-156 (382)
125 PRK08912 hypothetical protein; 77.6 12 0.00026 29.2 6.9 58 52-109 99-157 (387)
126 PTZ00377 alanine aminotransfer 77.5 32 0.00069 28.0 9.5 46 16-61 166-213 (481)
127 TIGR03301 PhnW-AepZ 2-aminoeth 77.5 12 0.00027 28.2 6.8 60 51-110 61-122 (355)
128 COG0399 WecE Predicted pyridox 77.4 6.3 0.00014 31.7 5.2 79 27-111 41-122 (374)
129 COG1167 ARO8 Transcriptional r 77.3 8.5 0.00018 31.4 6.1 59 52-111 167-225 (459)
130 PRK07682 hypothetical protein; 77.3 8.8 0.00019 29.8 6.0 60 51-110 92-153 (378)
131 PRK09257 aromatic amino acid a 77.2 23 0.00051 27.7 8.4 44 16-59 123-168 (396)
132 PLN00175 aminotransferase fami 76.9 12 0.00026 29.8 6.8 59 52-110 127-186 (413)
133 PRK05387 histidinol-phosphate 76.8 12 0.00025 28.7 6.5 54 53-106 90-143 (353)
134 PLN02231 alanine transaminase 76.8 19 0.00041 30.0 8.1 64 52-115 203-269 (534)
135 PRK06207 aspartate aminotransf 76.7 13 0.00028 29.5 6.9 60 51-110 113-177 (405)
136 cd00613 GDC-P Glycine cleavage 76.7 4.8 0.0001 31.3 4.4 44 15-58 110-157 (398)
137 TIGR03392 FeS_syn_CsdA cystein 76.6 10 0.00022 29.7 6.2 45 15-59 108-156 (398)
138 TIGR03235 DNA_S_dndA cysteine 76.5 5.9 0.00013 30.4 4.8 45 14-58 89-136 (353)
139 KOG2040|consensus 76.4 6.3 0.00014 34.4 5.2 52 12-63 629-680 (1001)
140 PRK05764 aspartate aminotransf 76.4 12 0.00027 29.0 6.7 58 52-109 103-162 (393)
141 cd00615 Orn_deC_like Ornithine 76.2 4.8 0.0001 30.4 4.2 45 15-59 101-151 (294)
142 PF03162 Y_phosphatase2: Tyros 76.2 8 0.00017 27.3 5.0 76 12-87 34-113 (164)
143 PRK10874 cysteine sulfinate de 75.8 9.7 0.00021 29.8 5.9 44 15-58 111-158 (401)
144 TIGR01977 am_tr_V_EF2568 cyste 75.8 8.5 0.00018 29.6 5.5 44 15-58 88-135 (376)
145 PRK09105 putative aminotransfe 75.7 12 0.00025 29.3 6.3 56 52-107 107-162 (370)
146 TIGR03403 nifS_epsilon cystein 75.7 14 0.00031 28.7 6.8 45 66-110 92-139 (382)
147 PLN02656 tyrosine transaminase 75.6 15 0.00032 29.2 6.9 60 51-110 107-168 (409)
148 PRK03321 putative aminotransfe 75.6 9.2 0.0002 29.3 5.7 49 62-110 96-144 (352)
149 PRK07777 aminotransferase; Val 75.1 12 0.00025 29.3 6.2 60 51-110 96-158 (387)
150 TIGR01976 am_tr_V_VC1184 cyste 74.8 11 0.00023 29.4 5.8 49 62-110 102-155 (397)
151 PRK08636 aspartate aminotransf 74.6 16 0.00035 28.8 6.9 62 51-112 106-169 (403)
152 COG0079 HisC Histidinol-phosph 74.3 14 0.00029 29.3 6.4 92 13-110 50-144 (356)
153 PRK08960 hypothetical protein; 74.2 13 0.00028 29.1 6.2 60 51-110 103-164 (387)
154 TIGR03301 PhnW-AepZ 2-aminoeth 74.2 15 0.00033 27.7 6.5 34 26-59 89-122 (355)
155 TIGR03540 DapC_direct LL-diami 74.1 12 0.00027 29.0 6.1 60 51-110 102-163 (383)
156 KOG0256|consensus 74.1 5.6 0.00012 32.6 4.1 33 85-117 192-226 (471)
157 PRK15407 lipopolysaccharide bi 73.9 16 0.00035 29.6 6.9 49 62-110 109-158 (438)
158 PRK03158 histidinol-phosphate 73.6 15 0.00032 28.3 6.4 47 62-109 103-149 (359)
159 PLN02368 alanine transaminase 73.5 45 0.00099 26.7 9.5 45 16-60 158-204 (407)
160 TIGR03235 DNA_S_dndA cysteine 73.5 15 0.00033 28.1 6.4 45 65-109 89-136 (353)
161 TIGR03403 nifS_epsilon cystein 73.3 6.7 0.00014 30.5 4.4 45 15-59 92-139 (382)
162 PRK09147 succinyldiaminopimela 73.3 17 0.00037 28.5 6.7 59 52-110 102-165 (396)
163 PF01212 Beta_elim_lyase: Beta 73.2 4.7 0.0001 31.0 3.4 50 63-112 67-119 (290)
164 PRK08068 transaminase; Reviewe 73.1 13 0.00028 29.1 6.0 58 52-109 106-165 (389)
165 PRK04870 histidinol-phosphate 73.0 6.9 0.00015 30.1 4.4 44 16-59 108-151 (356)
166 PRK02610 histidinol-phosphate 72.8 20 0.00043 27.9 7.0 45 66-110 118-163 (374)
167 PRK09295 bifunctional cysteine 72.3 14 0.00031 29.0 6.1 48 63-110 112-163 (406)
168 PRK01533 histidinol-phosphate 71.9 14 0.0003 29.0 5.9 59 51-110 92-150 (366)
169 PRK05942 aspartate aminotransf 71.8 16 0.00036 28.6 6.3 58 52-109 109-168 (394)
170 PLN02409 serine--glyoxylate am 71.7 11 0.00024 29.8 5.4 44 16-59 87-132 (401)
171 PLN02607 1-aminocyclopropane-1 71.6 28 0.0006 28.3 7.7 55 62-116 142-199 (447)
172 PRK05957 aspartate aminotransf 71.6 41 0.0009 26.3 8.6 43 16-58 116-158 (389)
173 PLN02450 1-aminocyclopropane-1 71.6 25 0.00054 28.6 7.5 63 53-115 124-189 (468)
174 PRK09295 bifunctional cysteine 71.5 4.5 9.7E-05 31.9 3.1 44 15-58 115-162 (406)
175 KOG1383|consensus 71.4 2.5 5.4E-05 34.9 1.6 44 68-111 174-218 (491)
176 TIGR03537 DapC succinyldiamino 71.3 44 0.00096 25.6 8.6 45 15-59 89-135 (350)
177 PRK10874 cysteine sulfinate de 71.3 19 0.00042 28.1 6.6 49 62-110 107-159 (401)
178 PRK09082 methionine aminotrans 71.2 34 0.00075 26.7 8.0 44 15-58 117-161 (386)
179 PTZ00433 tyrosine aminotransfe 70.6 18 0.00039 28.6 6.4 60 51-110 115-176 (412)
180 PLN02231 alanine transaminase 70.0 60 0.0013 27.1 9.5 48 16-63 219-268 (534)
181 PRK04147 N-acetylneuraminate l 69.9 35 0.00077 25.9 7.6 44 32-75 4-49 (293)
182 TIGR01264 tyr_amTase_E tyrosin 69.1 22 0.00049 27.8 6.6 60 51-110 106-167 (401)
183 PRK03620 5-dehydro-4-deoxygluc 69.1 41 0.00089 25.8 7.9 44 32-75 8-52 (303)
184 PRK06108 aspartate aminotransf 69.0 41 0.00088 25.9 7.9 43 16-58 111-156 (382)
185 TIGR03249 KdgD 5-dehydro-4-deo 69.0 33 0.00071 26.2 7.3 37 39-75 14-50 (296)
186 PLN02409 serine--glyoxylate am 68.8 26 0.00055 27.8 6.9 60 51-110 71-132 (401)
187 PRK07337 aminotransferase; Val 68.6 23 0.00051 27.6 6.5 58 52-109 102-161 (388)
188 TIGR02379 ECA_wecE TDP-4-keto- 68.5 9.8 0.00021 30.1 4.4 44 15-58 73-117 (376)
189 PRK13479 2-aminoethylphosphona 68.4 11 0.00024 29.0 4.6 39 21-59 88-128 (368)
190 TIGR02313 HpaI-NOT-DapA 2,4-di 68.4 33 0.00071 26.2 7.2 37 39-75 9-45 (294)
191 PRK06348 aspartate aminotransf 67.0 24 0.00052 27.5 6.3 59 52-110 101-161 (384)
192 TIGR00674 dapA dihydrodipicoli 66.8 29 0.00064 26.2 6.6 37 39-75 7-43 (285)
193 cd00408 DHDPS-like Dihydrodipi 66.7 39 0.00084 25.3 7.2 37 39-75 6-42 (281)
194 PRK08361 aspartate aminotransf 66.5 11 0.00024 29.5 4.3 45 15-59 119-165 (391)
195 PTZ00376 aspartate aminotransf 66.4 27 0.00058 27.6 6.5 52 60-111 120-173 (404)
196 PLN02417 dihydrodipicolinate s 65.6 39 0.00085 25.6 7.1 37 39-75 10-46 (280)
197 PLN02855 Bifunctional selenocy 65.5 27 0.0006 27.6 6.5 49 62-110 120-172 (424)
198 cd00951 KDGDH 5-dehydro-4-deox 65.5 44 0.00096 25.4 7.4 36 40-75 10-45 (289)
199 PRK06225 aspartate aminotransf 65.3 23 0.00051 27.5 6.0 60 51-110 94-156 (380)
200 cd00617 Tnase_like Tryptophana 65.3 28 0.00061 28.3 6.5 89 16-110 48-147 (431)
201 PRK09257 aromatic amino acid a 65.2 18 0.00039 28.4 5.3 49 62-110 118-168 (396)
202 PRK11658 UDP-4-amino-4-deoxy-L 65.2 12 0.00025 29.5 4.3 44 15-58 75-119 (379)
203 TIGR01976 am_tr_V_VC1184 cyste 65.1 18 0.00039 28.1 5.3 44 15-58 106-154 (397)
204 PRK15407 lipopolysaccharide bi 64.7 27 0.00059 28.3 6.3 44 15-58 113-157 (438)
205 PRK13238 tnaA tryptophanase/L- 64.7 44 0.00095 27.3 7.6 88 16-110 73-172 (460)
206 COG0156 BioF 7-keto-8-aminopel 64.6 15 0.00032 29.7 4.7 42 13-59 123-164 (388)
207 PRK07681 aspartate aminotransf 64.2 30 0.00066 27.1 6.4 58 52-109 105-164 (399)
208 PRK07550 hypothetical protein; 64.0 33 0.00072 26.7 6.6 59 52-110 102-162 (386)
209 PLN02187 rooty/superroot1 64.0 32 0.00069 28.0 6.7 59 51-109 142-202 (462)
210 PRK10558 alpha-dehydro-beta-de 63.8 32 0.00069 26.0 6.2 55 64-119 17-73 (256)
211 PLN02855 Bifunctional selenocy 63.7 21 0.00045 28.3 5.4 45 15-59 124-172 (424)
212 PRK01688 histidinol-phosphate 63.7 13 0.00028 28.7 4.2 43 15-57 101-143 (351)
213 PF12017 Tnp_P_element: Transp 63.6 16 0.00034 27.6 4.5 41 46-86 191-232 (236)
214 PRK13355 bifunctional HTH-doma 63.5 31 0.00067 28.3 6.6 58 52-109 220-279 (517)
215 PRK09147 succinyldiaminopimela 63.4 70 0.0015 25.0 8.7 43 16-58 120-164 (396)
216 PRK02610 histidinol-phosphate 63.4 27 0.00059 27.2 6.0 44 16-59 119-163 (374)
217 PLN02397 aspartate transaminas 63.0 64 0.0014 25.8 8.1 44 16-59 145-190 (423)
218 COG4998 Predicted endonuclease 62.9 28 0.0006 25.2 5.3 68 45-113 54-122 (209)
219 COG0399 WecE Predicted pyridox 62.9 14 0.0003 29.7 4.3 102 15-118 76-215 (374)
220 PRK00950 histidinol-phosphate 62.8 16 0.00036 27.9 4.6 43 16-58 114-156 (361)
221 TIGR03537 DapC succinyldiamino 62.8 37 0.00081 26.0 6.6 45 66-110 89-135 (350)
222 PRK06290 aspartate aminotransf 62.7 35 0.00075 27.2 6.6 59 52-110 118-178 (410)
223 PRK14807 histidinol-phosphate 62.3 16 0.00035 28.1 4.5 43 17-59 104-146 (351)
224 TIGR01265 tyr_nico_aTase tyros 62.1 41 0.00088 26.5 6.8 60 51-110 107-168 (403)
225 PLN00143 tyrosine/nicotianamin 61.6 33 0.0007 27.2 6.2 59 52-110 109-169 (409)
226 TIGR00165 S18 ribosomal protei 61.5 6.7 0.00014 24.1 1.8 18 102-119 50-67 (70)
227 PRK02731 histidinol-phosphate 61.3 39 0.00085 25.9 6.5 47 62-109 106-152 (367)
228 PLN00145 tyrosine/nicotianamin 61.2 34 0.00073 27.5 6.3 59 52-110 129-189 (430)
229 cd00950 DHDPS Dihydrodipicolin 61.1 43 0.00093 25.2 6.6 37 39-75 9-45 (284)
230 PRK03967 histidinol-phosphate 61.0 39 0.00084 25.9 6.4 46 63-108 93-138 (337)
231 PRK06836 aspartate aminotransf 61.0 19 0.00041 28.3 4.7 43 16-58 123-166 (394)
232 PRK07337 aminotransferase; Val 60.9 56 0.0012 25.4 7.4 43 16-58 117-161 (388)
233 PRK04635 histidinol-phosphate 60.3 41 0.00089 25.9 6.5 44 62-105 99-143 (354)
234 TIGR03540 DapC_direct LL-diami 60.3 73 0.0016 24.7 7.9 43 16-58 118-162 (383)
235 PRK09265 aminotransferase AlaT 60.3 56 0.0012 25.7 7.3 43 16-58 122-166 (404)
236 PRK07324 transaminase; Validat 59.9 36 0.00077 26.6 6.1 58 52-109 92-151 (373)
237 COG0329 DapA Dihydrodipicolina 59.1 49 0.0011 25.5 6.6 35 41-75 15-49 (299)
238 PRK08637 hypothetical protein; 59.0 49 0.0011 25.9 6.8 48 62-109 91-140 (388)
239 KOG0634|consensus 58.7 32 0.00069 28.5 5.6 60 50-110 134-193 (472)
240 TIGR00683 nanA N-acetylneurami 58.4 54 0.0012 25.0 6.7 36 40-75 10-46 (290)
241 PRK05166 histidinol-phosphate 58.4 18 0.00039 28.1 4.2 44 16-59 115-158 (371)
242 PRK06207 aspartate aminotransf 57.7 93 0.002 24.6 8.9 44 16-59 129-177 (405)
243 PRK09276 LL-diaminopimelate am 57.5 47 0.001 25.8 6.4 59 51-109 104-164 (385)
244 PRK00391 rpsR 30S ribosomal pr 57.4 9.4 0.0002 24.0 2.0 18 102-119 59-76 (79)
245 PRK03170 dihydrodipicolinate s 57.3 20 0.00043 27.2 4.2 16 98-113 109-124 (292)
246 PLN02672 methionine S-methyltr 57.2 41 0.00088 30.9 6.5 60 51-110 765-826 (1082)
247 PRK09265 aminotransferase AlaT 57.2 49 0.0011 26.0 6.5 58 52-109 107-166 (404)
248 PRK08153 histidinol-phosphate 57.1 39 0.00085 26.3 5.9 48 61-109 105-152 (369)
249 PRK10534 L-threonine aldolase; 57.1 44 0.00095 25.3 6.0 43 17-59 77-122 (333)
250 PF14606 Lipase_GDSL_3: GDSL-l 57.0 71 0.0015 23.0 7.6 103 12-116 2-136 (178)
251 COG0436 Aspartate/tyrosine/aro 55.7 47 0.001 26.6 6.2 60 51-110 100-162 (393)
252 TIGR01141 hisC histidinol-phos 55.6 32 0.00069 26.2 5.1 42 16-57 98-139 (346)
253 cd00378 SHMT Serine-glycine hy 55.5 30 0.00065 27.0 5.0 60 51-110 92-159 (402)
254 TIGR03538 DapC_gpp succinyldia 55.3 67 0.0014 25.1 7.0 60 51-110 101-164 (393)
255 PRK15481 transcriptional regul 54.9 25 0.00053 28.0 4.5 43 16-59 168-210 (431)
256 PF00266 Aminotran_5: Aminotra 54.9 29 0.00062 26.8 4.8 46 13-58 88-137 (371)
257 KOG0630|consensus 54.7 25 0.00054 29.9 4.5 54 66-119 233-294 (838)
258 PRK07683 aminotransferase A; V 54.6 53 0.0011 25.7 6.3 59 51-109 100-159 (387)
259 PRK12414 putative aminotransfe 54.2 24 0.00051 27.6 4.2 43 16-58 117-160 (384)
260 PRK08175 aminotransferase; Val 53.5 66 0.0014 25.2 6.7 58 52-110 103-160 (395)
261 TIGR01814 kynureninase kynuren 53.1 45 0.00098 26.2 5.7 45 15-59 115-167 (406)
262 PRK05764 aspartate aminotransf 52.9 33 0.00072 26.6 4.9 44 15-58 117-162 (393)
263 KOG0256|consensus 52.7 32 0.00069 28.4 4.7 34 33-66 191-226 (471)
264 cd00954 NAL N-Acetylneuraminic 52.7 94 0.002 23.5 7.2 37 39-75 9-46 (288)
265 PLN02483 serine palmitoyltrans 52.3 43 0.00093 27.5 5.6 48 60-112 181-228 (489)
266 PRK07309 aromatic amino acid a 51.7 39 0.00084 26.5 5.1 44 16-59 118-162 (391)
267 PF14695 LINES_C: Lines C-term 51.4 19 0.0004 19.6 2.3 18 102-119 7-24 (39)
268 TIGR02618 tyr_phenol_ly tyrosi 51.4 22 0.00048 29.4 3.7 87 17-110 67-165 (450)
269 cd00952 CHBPH_aldolase Trans-o 51.3 77 0.0017 24.4 6.6 31 45-75 23-53 (309)
270 cd01494 AAT_I Aspartate aminot 51.2 53 0.0011 21.4 5.1 49 51-99 28-77 (170)
271 PRK13401 30S ribosomal protein 51.1 13 0.00029 23.5 1.9 18 102-119 58-75 (82)
272 PTZ00433 tyrosine aminotransfe 50.0 1.3E+02 0.0027 23.8 8.5 44 16-59 131-176 (412)
273 KOG1368|consensus 49.7 12 0.00026 29.7 1.9 30 82-111 117-146 (384)
274 PRK08912 hypothetical protein; 48.6 43 0.00092 26.1 4.9 44 15-58 113-157 (387)
275 PRK05958 8-amino-7-oxononanoat 48.5 76 0.0016 24.2 6.2 46 60-110 119-164 (385)
276 PRK08636 aspartate aminotransf 48.4 1.3E+02 0.0029 23.6 9.3 46 15-60 121-168 (403)
277 PRK10534 L-threonine aldolase; 48.2 68 0.0015 24.2 5.9 92 14-110 27-122 (333)
278 PLN02656 tyrosine transaminase 48.1 1.4E+02 0.0029 23.6 9.2 43 16-58 123-167 (409)
279 PRK08363 alanine aminotransfer 48.0 69 0.0015 25.0 6.0 59 51-109 104-164 (398)
280 COG0520 csdA Selenocysteine ly 47.6 89 0.0019 25.2 6.6 49 61-109 108-160 (405)
281 PRK09105 putative aminotransfe 47.6 30 0.00065 27.0 3.9 41 16-56 122-162 (370)
282 TIGR03239 GarL 2-dehydro-3-deo 47.1 1.2E+02 0.0026 22.8 7.1 55 64-119 10-66 (249)
283 PLN02397 aspartate transaminas 46.8 1.2E+02 0.0025 24.3 7.2 49 62-110 140-190 (423)
284 PRK06348 aspartate aminotransf 46.0 1.4E+02 0.0031 23.2 8.2 43 16-58 116-160 (384)
285 PF08259 Periviscerokin: Periv 46.0 8.2 0.00018 15.2 0.2 6 114-119 3-8 (11)
286 CHL00077 rps18 ribosomal prote 45.8 18 0.00038 23.1 1.9 18 102-119 60-77 (86)
287 PLN02450 1-aminocyclopropane-1 45.8 1.6E+02 0.0036 23.9 10.1 43 20-62 142-187 (468)
288 PLN00175 aminotransferase fami 45.4 43 0.00094 26.6 4.5 43 16-58 142-185 (413)
289 PRK06702 O-acetylhomoserine am 45.3 59 0.0013 26.5 5.3 47 60-110 96-146 (432)
290 TIGR03849 arch_ComA phosphosul 45.2 1.3E+02 0.0029 22.7 8.0 39 30-69 80-118 (237)
291 KOG1357|consensus 44.6 25 0.00053 29.4 3.0 41 71-116 228-268 (519)
292 TIGR03538 DapC_gpp succinyldia 43.9 1.5E+02 0.0033 23.0 8.7 44 16-59 119-164 (393)
293 PRK10128 2-keto-3-deoxy-L-rham 43.6 1.5E+02 0.0032 22.7 7.1 57 62-119 14-72 (267)
294 PRK13355 bifunctional HTH-doma 43.3 1.9E+02 0.004 23.8 8.8 43 16-58 235-279 (517)
295 PF09012 FeoC: FeoC like trans 43.1 31 0.00068 20.4 2.7 23 95-117 22-44 (69)
296 cd01494 AAT_I Aspartate aminot 43.1 53 0.0011 21.4 4.1 34 14-47 42-76 (170)
297 PRK05387 histidinol-phosphate 43.0 42 0.00092 25.6 4.0 38 18-55 106-143 (353)
298 PRK08134 O-acetylhomoserine am 42.7 91 0.002 25.3 6.0 45 61-110 100-148 (433)
299 PF02679 ComA: (2R)-phospho-3- 42.6 24 0.00052 26.7 2.5 80 30-110 93-194 (244)
300 PRK08637 hypothetical protein; 42.6 1.1E+02 0.0025 23.8 6.5 43 16-58 96-140 (388)
301 PLN02483 serine palmitoyltrans 42.3 78 0.0017 26.0 5.7 40 15-59 187-226 (489)
302 PRK03317 histidinol-phosphate 42.1 51 0.0011 25.4 4.4 42 18-59 117-158 (368)
303 PRK00011 glyA serine hydroxyme 41.3 57 0.0012 25.6 4.6 60 51-110 98-163 (416)
304 PRK08960 hypothetical protein; 41.2 52 0.0011 25.6 4.3 44 15-58 118-163 (387)
305 KOG0633|consensus 40.2 24 0.00052 27.7 2.2 34 79-112 126-159 (375)
306 PLN03026 histidinol-phosphate 40.2 58 0.0013 25.5 4.5 40 19-58 133-172 (380)
307 PLN02376 1-aminocyclopropane-1 38.9 2.2E+02 0.0048 23.4 9.9 46 16-61 146-194 (496)
308 PRK07366 succinyldiaminopimela 38.7 1.4E+02 0.0031 23.1 6.5 58 52-109 104-163 (388)
309 PRK05942 aspartate aminotransf 38.4 65 0.0014 25.2 4.5 43 16-58 124-168 (394)
310 COG3603 Uncharacterized conser 38.4 51 0.0011 22.5 3.3 52 66-117 72-125 (128)
311 PRK06107 aspartate aminotransf 38.3 1.4E+02 0.003 23.4 6.4 58 52-109 105-164 (402)
312 PRK03967 histidinol-phosphate 38.3 58 0.0013 25.0 4.1 42 16-57 97-138 (337)
313 PRK04781 histidinol-phosphate 38.3 1.6E+02 0.0035 22.8 6.7 58 51-108 87-148 (364)
314 TIGR00858 bioF 8-amino-7-oxono 38.0 1.5E+02 0.0032 22.3 6.3 44 62-110 98-141 (360)
315 COG2147 RPL19A Ribosomal prote 37.7 22 0.00049 24.9 1.6 39 79-117 10-50 (150)
316 PRK06939 2-amino-3-ketobutyrat 37.7 1.3E+02 0.0028 23.1 6.0 46 61-111 123-168 (397)
317 PRK03620 5-dehydro-4-deoxygluc 37.3 50 0.0011 25.3 3.6 29 88-116 14-42 (303)
318 COG0044 PyrC Dihydroorotase an 37.3 2.3E+02 0.005 23.2 8.5 93 24-117 74-173 (430)
319 PRK08570 rpl19e 50S ribosomal 37.2 20 0.00044 25.2 1.3 40 78-117 9-50 (150)
320 PF03808 Glyco_tran_WecB: Glyc 37.0 1.4E+02 0.0031 20.7 7.0 81 25-114 15-100 (172)
321 KOG0633|consensus 36.8 33 0.00071 26.9 2.5 46 13-60 113-158 (375)
322 PRK06225 aspartate aminotransf 36.4 70 0.0015 24.8 4.4 43 16-58 110-155 (380)
323 cd00953 KDG_aldolase KDG (2-ke 36.1 1.8E+02 0.0039 22.0 6.5 35 40-75 10-44 (279)
324 PF02662 FlpD: Methyl-viologen 36.1 1E+02 0.0023 20.5 4.6 45 13-60 1-52 (124)
325 cd06454 KBL_like KBL_like; thi 35.8 87 0.0019 23.5 4.7 41 15-60 87-127 (349)
326 PF02347 GDC-P: Glycine cleava 35.6 79 0.0017 26.0 4.6 71 30-100 120-194 (429)
327 PRK08068 transaminase; Reviewe 35.0 83 0.0018 24.5 4.6 43 16-58 121-165 (389)
328 cd01418 Ribosomal_L19e_A Ribos 34.9 26 0.00056 24.6 1.5 40 78-117 6-47 (145)
329 PRK07568 aspartate aminotransf 34.8 1.3E+02 0.0028 23.4 5.6 59 52-110 100-161 (397)
330 PRK07777 aminotransferase; Val 34.6 78 0.0017 24.6 4.4 43 16-58 112-157 (387)
331 COG2876 AroA 3-deoxy-D-arabino 34.3 2.2E+02 0.0049 22.1 6.7 106 6-116 146-282 (286)
332 PF00701 DHDPS: Dihydrodipicol 34.0 67 0.0014 24.2 3.8 72 43-115 46-126 (289)
333 TIGR01264 tyr_amTase_E tyrosin 33.7 2.3E+02 0.005 22.1 8.0 42 17-58 123-166 (401)
334 PF02268 TFIIA_gamma_N: Transc 33.5 59 0.0013 18.5 2.6 18 101-118 12-29 (49)
335 PRK04147 N-acetylneuraminate l 33.4 50 0.0011 25.1 3.0 29 88-116 10-39 (293)
336 KOG1368|consensus 33.2 45 0.00097 26.6 2.7 46 14-59 97-145 (384)
337 TIGR03249 KdgD 5-dehydro-4-deo 32.8 70 0.0015 24.4 3.8 28 89-116 13-40 (296)
338 PRK06939 2-amino-3-ketobutyrat 32.8 1.1E+02 0.0024 23.5 5.0 41 15-60 128-168 (397)
339 PRK03158 histidinol-phosphate 32.6 81 0.0018 24.1 4.1 41 16-57 108-148 (359)
340 PRK07682 hypothetical protein; 32.4 94 0.002 24.0 4.5 43 16-58 108-152 (378)
341 PF00356 LacI: Bacterial regul 32.1 25 0.00055 19.5 0.9 39 80-118 5-45 (46)
342 PLN02607 1-aminocyclopropane-1 31.8 2.8E+02 0.006 22.5 10.0 40 25-64 156-198 (447)
343 PF08967 DUF1884: Domain of un 31.8 49 0.0011 21.0 2.2 18 101-118 11-28 (85)
344 PRK06855 aminotransferase; Val 31.4 2.5E+02 0.0053 22.5 6.8 50 61-110 116-168 (433)
345 PRK13238 tnaA tryptophanase/L- 31.4 1.4E+02 0.003 24.5 5.4 39 21-59 123-172 (460)
346 PRK13392 5-aminolevulinate syn 31.4 1.1E+02 0.0024 24.0 4.8 28 14-41 133-160 (410)
347 cd00481 Ribosomal_L19e Ribosom 31.3 27 0.00059 24.4 1.2 40 78-117 6-47 (145)
348 PRK02731 histidinol-phosphate 31.2 91 0.002 23.9 4.2 42 16-58 111-152 (367)
349 TIGR01825 gly_Cac_T_rel pyrido 31.1 1.2E+02 0.0027 23.2 5.0 41 15-60 119-159 (385)
350 PLN02187 rooty/superroot1 30.9 2.9E+02 0.0063 22.4 8.7 42 17-58 159-202 (462)
351 PRK07681 aspartate aminotransf 30.9 1.1E+02 0.0024 23.9 4.7 43 16-58 120-164 (399)
352 PRK05613 O-acetylhomoserine am 30.8 1.3E+02 0.0029 24.4 5.2 46 61-110 105-154 (437)
353 PRK09276 LL-diaminopimelate am 30.8 2.5E+02 0.0055 21.7 8.4 43 16-58 120-164 (385)
354 PRK05958 8-amino-7-oxononanoat 30.8 91 0.002 23.8 4.1 40 15-59 125-164 (385)
355 PRK07550 hypothetical protein; 30.8 1.2E+02 0.0025 23.6 4.8 44 16-59 117-162 (386)
356 cd06454 KBL_like KBL_like; thi 30.6 2.1E+02 0.0045 21.4 6.1 50 57-111 78-127 (349)
357 PRK09148 aminotransferase; Val 30.6 1.3E+02 0.0028 23.7 5.1 58 52-110 104-161 (405)
358 cd01417 Ribosomal_L19e_E Ribos 30.5 29 0.00062 24.8 1.2 40 78-117 6-47 (164)
359 TIGR00858 bioF 8-amino-7-oxono 30.4 1.3E+02 0.0029 22.5 5.0 40 15-59 102-141 (360)
360 PRK14190 bifunctional 5,10-met 30.2 2.6E+02 0.0056 21.6 8.0 37 76-114 52-88 (284)
361 PRK04635 histidinol-phosphate 30.2 1E+02 0.0022 23.7 4.4 39 16-54 105-143 (354)
362 PRK15424 propionate catabolism 30.1 3.4E+02 0.0074 22.9 7.8 86 11-111 107-192 (538)
363 PRK01533 histidinol-phosphate 29.4 1.1E+02 0.0024 23.9 4.4 42 16-58 108-149 (366)
364 COG2008 GLY1 Threonine aldolas 29.2 48 0.001 26.4 2.4 47 13-59 74-123 (342)
365 KOG3434|consensus 29.1 1.4E+02 0.003 20.4 4.3 20 94-113 28-47 (125)
366 PF01555 N6_N4_Mtase: DNA meth 28.9 70 0.0015 22.3 3.0 49 48-96 176-224 (231)
367 PTZ00097 60S ribosomal protein 28.9 31 0.00068 24.9 1.2 40 78-117 7-48 (175)
368 PRK13400 30S ribosomal protein 28.9 44 0.00095 23.4 1.8 18 102-119 67-84 (147)
369 TIGR01825 gly_Cac_T_rel pyrido 28.7 2.5E+02 0.0055 21.5 6.3 49 58-111 111-159 (385)
370 COG2022 ThiG Uncharacterized e 28.6 2E+02 0.0044 22.0 5.5 68 45-116 166-235 (262)
371 PRK12581 oxaloacetate decarbox 28.3 3.5E+02 0.0076 22.5 7.9 84 32-118 116-208 (468)
372 COG0489 Mrp ATPases involved i 28.2 2.6E+02 0.0057 21.0 7.6 75 40-116 142-219 (265)
373 PTZ00436 60S ribosomal protein 28.1 34 0.00074 27.0 1.3 40 78-117 9-50 (357)
374 cd01018 ZntC Metal binding pro 28.0 2.6E+02 0.0055 20.8 7.2 46 70-116 173-218 (266)
375 PRK03321 putative aminotransfe 27.9 1.1E+02 0.0023 23.4 4.1 31 28-58 113-143 (352)
376 PTZ00094 serine hydroxymethylt 27.8 1.8E+02 0.0039 23.4 5.5 48 63-110 123-180 (452)
377 PLN02822 serine palmitoyltrans 27.6 2.2E+02 0.0048 23.3 6.0 41 15-60 195-235 (481)
378 PF08784 RPA_C: Replication pr 27.5 64 0.0014 20.4 2.4 20 98-117 76-95 (102)
379 TIGR01822 2am3keto_CoA 2-amino 27.4 1.7E+02 0.0036 22.6 5.1 58 15-77 124-183 (393)
380 PF13405 EF-hand_6: EF-hand do 27.3 49 0.0011 16.1 1.4 20 91-110 9-28 (31)
381 PRK07908 hypothetical protein; 26.6 1E+02 0.0022 23.5 3.8 39 67-105 99-137 (349)
382 PRK06234 methionine gamma-lyas 26.5 2.9E+02 0.0063 21.9 6.4 53 53-110 92-148 (400)
383 PLN02955 8-amino-7-oxononanoat 26.4 1.3E+02 0.0028 25.1 4.5 21 13-33 200-220 (476)
384 PLN02822 serine palmitoyltrans 26.3 3.4E+02 0.0073 22.2 6.9 53 54-111 183-235 (481)
385 KOG0634|consensus 25.9 99 0.0022 25.7 3.6 45 15-60 150-194 (472)
386 TIGR02617 tnaA_trp_ase tryptop 25.7 1.1E+02 0.0023 25.6 3.8 44 68-111 125-179 (467)
387 PRK06290 aspartate aminotransf 25.7 3.4E+02 0.0074 21.5 8.5 41 18-58 135-177 (410)
388 TIGR01265 tyr_nico_aTase tyros 25.0 1.5E+02 0.0032 23.3 4.5 43 16-58 123-167 (403)
389 KOG0037|consensus 24.9 1E+02 0.0022 23.1 3.3 62 39-110 65-152 (221)
390 COG0329 DapA Dihydrodipicolina 24.5 91 0.002 24.0 3.1 28 89-116 12-39 (299)
391 PRK11840 bifunctional sulfur c 24.2 3.7E+02 0.008 21.4 9.2 97 12-110 135-247 (326)
392 TIGR01326 OAH_OAS_sulfhy OAH/O 23.8 2.7E+02 0.0059 22.2 5.8 45 61-110 93-141 (418)
393 PRK07503 methionine gamma-lyas 23.8 2.5E+02 0.0054 22.4 5.6 53 53-110 93-149 (403)
394 PF05378 Hydant_A_N: Hydantoin 23.7 98 0.0021 21.9 3.0 33 46-78 129-161 (176)
395 PRK07179 hypothetical protein; 23.4 3.7E+02 0.0079 21.0 6.7 50 56-110 130-179 (407)
396 PRK08153 histidinol-phosphate 23.3 1.9E+02 0.0041 22.4 4.7 42 16-58 111-152 (369)
397 PRK07179 hypothetical protein; 23.3 1.7E+02 0.0036 23.0 4.5 40 15-59 140-179 (407)
398 PTZ00331 alpha/beta hydrolase; 23.1 2.5E+02 0.0053 20.3 5.1 50 14-64 148-200 (212)
399 PF01297 TroA: Periplasmic sol 23.1 3.1E+02 0.0066 20.1 7.1 49 68-116 151-200 (256)
400 TIGR00696 wecB_tagA_cpsF bacte 23.0 2.8E+02 0.0061 19.6 6.9 80 25-113 15-98 (177)
401 PRK07324 transaminase; Validat 23.0 1.5E+02 0.0032 23.1 4.1 42 16-57 107-150 (373)
402 TIGR03336 IOR_alpha indolepyru 22.8 4.7E+02 0.01 22.1 7.9 96 12-111 231-335 (595)
403 COG0520 csdA Selenocysteine ly 22.8 2.5E+02 0.0054 22.6 5.4 45 14-58 112-160 (405)
404 COG3720 HemS Putative heme deg 22.8 50 0.0011 26.0 1.3 42 37-78 217-258 (349)
405 TIGR01814 kynureninase kynuren 22.7 2.1E+02 0.0046 22.4 4.9 45 66-110 115-167 (406)
406 PF08069 Ribosomal_S13_N: Ribo 22.5 45 0.00097 19.8 0.8 22 97-118 26-47 (60)
407 PF09498 DUF2388: Protein of u 22.4 91 0.002 19.2 2.2 20 95-114 35-54 (72)
408 PRK08133 O-succinylhomoserine 22.3 3.1E+02 0.0067 21.7 5.8 44 61-109 97-144 (390)
409 cd07484 Peptidases_S8_Thermita 22.1 2.4E+02 0.0052 20.5 4.9 46 71-116 67-126 (260)
410 PF00036 EF-hand_1: EF hand; 22.1 54 0.0012 16.1 1.0 20 91-110 9-28 (29)
411 TIGR01370 cysRS possible cyste 22.1 2.6E+02 0.0056 22.0 5.2 19 101-119 283-301 (315)
412 PRK09064 5-aminolevulinate syn 22.0 2.1E+02 0.0046 22.3 4.8 30 12-41 131-160 (407)
413 PF05889 SLA_LP_auto_ag: Solub 22.0 1.7E+02 0.0037 23.8 4.3 50 62-111 99-151 (389)
414 PF08410 DUF1737: Domain of un 21.8 1.2E+02 0.0025 17.6 2.5 21 99-119 12-32 (54)
415 TIGR01437 selA_rel uncharacter 21.8 3.9E+02 0.0085 20.8 6.7 34 76-111 115-148 (363)
416 PRK14182 bifunctional 5,10-met 21.4 3.9E+02 0.0085 20.7 7.8 60 53-114 17-86 (282)
417 KOG1549|consensus 21.3 1.4E+02 0.003 24.6 3.7 44 66-109 133-179 (428)
418 PF06838 Met_gamma_lyase: Meth 21.2 1.2E+02 0.0025 24.8 3.2 28 83-110 126-153 (403)
419 PRK06425 histidinol-phosphate 20.9 3.8E+02 0.0082 20.3 6.2 39 66-105 81-119 (332)
420 COG0075 Serine-pyruvate aminot 20.9 4.5E+02 0.0097 21.3 6.5 61 51-111 67-129 (383)
421 PRK05968 hypothetical protein; 20.9 4.2E+02 0.0091 20.9 6.3 52 52-108 90-145 (389)
422 PRK14809 histidinol-phosphate 20.9 3.9E+02 0.0084 20.4 6.7 47 62-108 104-152 (357)
423 PLN02727 NAD kinase 20.8 3.9E+02 0.0085 24.6 6.5 59 25-83 301-359 (986)
424 PF01276 OKR_DC_1: Orn/Lys/Arg 20.7 57 0.0012 26.7 1.4 61 15-76 108-178 (417)
425 PRK14168 bifunctional 5,10-met 20.5 4.2E+02 0.0091 20.7 7.8 37 76-114 53-89 (297)
426 cd08070 MPN_like Mpr1p, Pad1p 20.3 1.5E+02 0.0033 19.4 3.2 33 44-76 49-81 (128)
427 COG3978 Acetolactate synthase 20.3 1.5E+02 0.0033 18.7 2.9 34 47-83 11-44 (86)
428 COG0079 HisC Histidinol-phosph 20.2 2.2E+02 0.0048 22.5 4.6 39 20-59 106-144 (356)
429 PF12728 HTH_17: Helix-turn-he 20.0 1.2E+02 0.0025 16.4 2.2 19 92-110 31-49 (51)
430 cd07491 Peptidases_S8_7 Peptid 20.0 2.5E+02 0.0055 20.7 4.6 18 98-115 85-102 (247)
No 1
>KOG0628|consensus
Probab=99.77 E-value=4.5e-19 Score=141.19 Aligned_cols=81 Identities=47% Similarity=0.875 Sum_probs=78.7
Q ss_pred CCCCCccccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815 2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG 81 (119)
Q Consensus 2 ~p~~~~~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a 81 (119)
+|+++|...++++|+|||+|+|+|++|||.++|+.++.+|+|+++.|+++.|+++|++|+++|++||++++|.|||..++
T Consensus 171 ~p~~~e~~~~~~lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca 250 (511)
T KOG0628|consen 171 PPELHESSVLARLVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCA 250 (511)
T ss_pred CCcccchhhhhhheEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred H
Q psy9815 82 L 82 (119)
Q Consensus 82 ~ 82 (119)
.
T Consensus 251 ~ 251 (511)
T KOG0628|consen 251 F 251 (511)
T ss_pred c
Confidence 4
No 2
>KOG0629|consensus
Probab=99.69 E-value=1.7e-17 Score=131.37 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=76.1
Q ss_pred CCCCCcccc--ccCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcch
Q psy9815 2 HPDWKDSDI--IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSS 76 (119)
Q Consensus 2 ~p~~~~~~~--~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gs 76 (119)
+|++++.+. ++++++|+|+++|||+.|||..+|+ +++.|+||++|+|++++||+.|.+.+++|.+||++.+|+||
T Consensus 184 ~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGT 263 (510)
T KOG0629|consen 184 FPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGT 263 (510)
T ss_pred CchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCc
Confidence 688888774 7899999999999999999999995 89999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy9815 77 VERAGL 82 (119)
Q Consensus 77 t~~~a~ 82 (119)
|..||-
T Consensus 264 TV~GAF 269 (510)
T KOG0629|consen 264 TVLGAF 269 (510)
T ss_pred eeeecc
Confidence 998874
No 3
>KOG0628|consensus
Probab=99.69 E-value=1.5e-17 Score=132.51 Aligned_cols=115 Identities=34% Similarity=0.525 Sum_probs=96.5
Q ss_pred CCCCCCc-----cccccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH-----------HhCC
Q psy9815 1 AHPDWKD-----SDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED-----------LKKG 64 (119)
Q Consensus 1 ~~p~~~~-----~~~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~-----------~~~g 64 (119)
.+|.+|| ++|++++..++-++.|.+ +...+|+.+.+. +++..-.-.++-.+.+++. +...
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~---~g~GgGviQ~ta-ses~lvallaaR~~~i~~~k~~~p~~~e~~~~~~ 182 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLG---LGDGGGVIQGTA-SESVLVALLAARTEKIEEIKSRPPELHESSVLAR 182 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccC---CCCCcceEecCc-chhHHHHHHHHHHHHHHHhhcCCCcccchhhhhh
Confidence 3689999 569999999999999987 577888888775 6665444444444444432 3446
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
++.|++.++|+|+++|+.+.|+++|.+++|.|+.|+++.|+++|++|+++|++||
T Consensus 183 lV~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf 237 (511)
T KOG0628|consen 183 LVAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPF 237 (511)
T ss_pred heEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccE
Confidence 8999999999999999999999999999999999999999999999999999998
No 4
>PLN02590 probable tyrosine decarboxylase
Probab=99.60 E-value=7.6e-16 Score=126.44 Aligned_cols=72 Identities=42% Similarity=0.674 Sum_probs=67.1
Q ss_pred ccCeeeeecCCccccHHHHHhccCc---eeEEeecC--CCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 11 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 11 ~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d--~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
.+++++|+|+++|||+.||++++|+ +++.||+| ++++||+++|+++|++++++|+.|+++++|+|||++|+.
T Consensus 227 ~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai 303 (539)
T PLN02590 227 LPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAV 303 (539)
T ss_pred CCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc
Confidence 4689999999999999999999999 69999998 468999999999999999999999999999999998753
No 5
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.59 E-value=1.1e-15 Score=120.52 Aligned_cols=72 Identities=35% Similarity=0.570 Sum_probs=64.8
Q ss_pred ccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 11 ~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
.+++++|+|+++|||+.|||+++|+.++.||+|++++||+++|+++++++.++|..|+++++++|||.+|+.
T Consensus 139 ~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~ 210 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAI 210 (373)
T ss_dssp CSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB
T ss_pred ccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccc
Confidence 468999999999999999999999999999999999999999999999999999999999999999988764
No 6
>PLN02880 tyrosine decarboxylase
Probab=99.57 E-value=2.9e-15 Score=121.85 Aligned_cols=72 Identities=33% Similarity=0.579 Sum_probs=67.1
Q ss_pred ccCeeeeecCCccccHHHHHhccCc---eeEEeecCC--CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 11 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 11 ~~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
.+++++|+|+++|||+.||++++|+ +++.||+|+ +++||+++|++++++++++|..|+++++|+|||++|+.
T Consensus 179 ~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~Gai 255 (490)
T PLN02880 179 LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAV 255 (490)
T ss_pred cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCccc
Confidence 3689999999999999999999999 589999985 78999999999999999999999999999999999874
No 7
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.45 E-value=9e-14 Score=115.58 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=64.6
Q ss_pred eeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
++|+|+.+|||+.||+.++|+ +++.||+|++++||+++|++++++++++|..|++++++.|||+.|+.
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~Gai 294 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAV 294 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCccc
Confidence 799999999999999999999 69999999999999999999999999999999999999999998764
No 8
>PLN02263 serine decarboxylase
Probab=99.42 E-value=1.2e-13 Score=111.87 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=62.4
Q ss_pred cccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815 10 IIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG 81 (119)
Q Consensus 10 ~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a 81 (119)
+.++.++|+|+++|||+.||++++|++++.||+|++|+||+++|++++.++. ..|+++++|.|||.+|+
T Consensus 175 ~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GA 243 (470)
T PLN02263 175 VFPDGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGA 243 (470)
T ss_pred hcCCcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcC
Confidence 4456789999999999999999999999999999999999999999997753 46999999999998776
No 9
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.30 E-value=3e-12 Score=105.05 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=66.4
Q ss_pred cCeeeeecCCccccHHHHHhccCc---eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
+++++|+|++.|||+.|+++++|+ +++.||+|++|+||+++|++++++++++|..|+++++++|||++|+.
T Consensus 208 ~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai 281 (522)
T TIGR03799 208 DGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281 (522)
T ss_pred CceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc
Confidence 578999999999999999999998 79999999999999999999999999999999999999999987753
No 10
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=98.98 E-value=1.1e-09 Score=86.65 Aligned_cols=56 Identities=36% Similarity=0.633 Sum_probs=50.1
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
..+.|++.++|.|+.|++.++|+.++.|++|++++||.++|+++|+++.++|.+||
T Consensus 141 ~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~ 196 (373)
T PF00282_consen 141 KPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPF 196 (373)
T ss_dssp SEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEE
T ss_pred ccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccce
Confidence 35788999999999999999999999999999999999999999999999999985
No 11
>PLN02590 probable tyrosine decarboxylase
Probab=98.97 E-value=8.5e-10 Score=90.98 Aligned_cols=56 Identities=43% Similarity=0.679 Sum_probs=52.3
Q ss_pred CCccEEeecCcchHHHHHHhcCc---eeEEeecC--CCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
.++.|++.++|+|+.|+++++|+ +++.||+| ++++||+++|+++|++|+++|++||
T Consensus 229 ~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~ 289 (539)
T PLN02590 229 QLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF 289 (539)
T ss_pred CEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcE
Confidence 46788999999999999999999 79999998 5789999999999999999999997
No 12
>KOG0629|consensus
Probab=98.89 E-value=2.5e-09 Score=85.42 Aligned_cols=56 Identities=30% Similarity=0.409 Sum_probs=53.7
Q ss_pred CCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
.++.|++.++|+|+.+||+++|+ ++++|+||++|+|++++||+.|.+.+++|.+||
T Consensus 197 ~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf 255 (510)
T KOG0629|consen 197 PLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPF 255 (510)
T ss_pred cEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCe
Confidence 36789999999999999999997 999999999999999999999999999999998
No 13
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=98.89 E-value=1.1e-09 Score=88.82 Aligned_cols=64 Identities=31% Similarity=0.434 Sum_probs=59.8
Q ss_pred eeeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG 81 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a 81 (119)
..+|+|+.+|+|+.||+.++|+.++.||++. +++||+++|++++.++...| ++++++|||.+|.
T Consensus 158 P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~ 222 (460)
T COG0076 158 PNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGS 222 (460)
T ss_pred CeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc----eEEEEecCCCCCc
Confidence 3799999999999999999999999999988 89999999999999998887 8999999998886
No 14
>PLN02880 tyrosine decarboxylase
Probab=98.88 E-value=3.1e-09 Score=86.73 Aligned_cols=56 Identities=34% Similarity=0.572 Sum_probs=52.0
Q ss_pred CCccEEeecCcchHHHHHHhcCc---eeEEeecCC--CCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~--~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
+++.|++.++|+|+.|+++++|+ +++.||+|+ +++||+++|+++|++++++|++||
T Consensus 181 ~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~ 241 (490)
T PLN02880 181 KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF 241 (490)
T ss_pred CeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccE
Confidence 46788999999999999999999 599999974 789999999999999999999997
No 15
>PRK02769 histidine decarboxylase; Provisional
Probab=98.81 E-value=3.6e-09 Score=83.84 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=61.9
Q ss_pred cccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 10 IIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 10 ~~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
|.+...+|+|+..|+|+.|+++.+|+..+.||++++|+||+++|++++.++ +..|.+++.++||+.+|+.
T Consensus 107 ~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~i 176 (380)
T PRK02769 107 LFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAI 176 (380)
T ss_pred hCCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCccc
Confidence 344568999999999999999999999999999999999999999999775 5568899999999988764
No 16
>PLN03032 serine decarboxylase; Provisional
Probab=98.80 E-value=3.5e-09 Score=83.91 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=58.9
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
+.++|+|+..|+|+.|+++++|+.++.||+|++|+||+++|++++.++. ..|++++.++|||++|+.
T Consensus 111 ~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~---~~~~lvv~tagtt~tG~i 177 (374)
T PLN03032 111 DGILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNR---DKPAILNVNIGTTVKGAV 177 (374)
T ss_pred CcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcC---CCCEEEEEEecCcCCccC
Confidence 3479999999999999999999999999999999999999999997642 258888999999987653
No 17
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=98.64 E-value=4.8e-08 Score=81.66 Aligned_cols=54 Identities=19% Similarity=0.197 Sum_probs=49.5
Q ss_pred ccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
+.+++..+|.|+.|++.++|+ +++.||+|+++|||+++|+++|++++++|..||
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~ 280 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPIL 280 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeE
Confidence 456666669999999999999 699999999999999999999999999999885
No 18
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=98.58 E-value=3.8e-08 Score=79.25 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=56.8
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
+..+|+|++.|+|+.|+++.+|++++.||+|+. ++||++.|++++.++ +++++.++||+++|+.
T Consensus 138 ~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~------t~lV~~t~g~t~tG~i 202 (431)
T TIGR01788 138 KPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN------TIGVVCILGTTYTGEY 202 (431)
T ss_pred CcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhC------CeEEEEEeCCCCCccc
Confidence 568999999999999999999999999999975 699999999999753 5788899999888764
No 19
>PLN02263 serine decarboxylase
Probab=98.47 E-value=2.5e-07 Score=75.36 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=45.5
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 112 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~ 112 (119)
..+.|++.++|.|+.|+++++|++++.||+|++|+||+++|+++|+++.
T Consensus 178 ~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~ 226 (470)
T PLN02263 178 DGILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANK 226 (470)
T ss_pred CcEEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC
Confidence 3478999999999999999999999999999999999999999998764
No 20
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.46 E-value=3.3e-07 Score=75.54 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=52.5
Q ss_pred CCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
+.+++++...|.|+.+++.++|+ +++.||+|++|+||+++|+++|++++++|..||
T Consensus 209 ~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~ 267 (522)
T TIGR03799 209 GLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPL 267 (522)
T ss_pred ceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcE
Confidence 45789999999999999999999 899999999999999999999999999998875
No 21
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.04 E-value=7.4e-06 Score=62.72 Aligned_cols=69 Identities=39% Similarity=0.541 Sum_probs=58.2
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAG 81 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a 81 (119)
+.++++++..|+|+.+++..+|.+++.+|+++++.++++.|++++.++..++..+.++..+++++.+|.
T Consensus 95 ~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~ 163 (345)
T cd06450 95 KLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGA 163 (345)
T ss_pred CeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCC
Confidence 568999999999999999999999999999988999999999999887767666666666666665543
No 22
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=97.70 E-value=5.3e-05 Score=61.73 Aligned_cols=50 Identities=34% Similarity=0.446 Sum_probs=46.9
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHHHHhCC
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~~~~~G 115 (119)
..+++..+|.|..|++.++|++++.+++++ +++||+++|+++|+++...|
T Consensus 159 ~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g 209 (460)
T COG0076 159 NIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG 209 (460)
T ss_pred eEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc
Confidence 478999999999999999999999999988 89999999999999998875
No 23
>PLN03032 serine decarboxylase; Provisional
Probab=97.48 E-value=0.00025 Score=56.35 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=44.1
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
-+.+++...|.|+.+++.++|++++.||+|++|+||+++|+++|+++
T Consensus 112 ~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~ 158 (374)
T PLN03032 112 GILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKN 158 (374)
T ss_pred cEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHc
Confidence 36899999999999999999999999999999999999999999864
No 24
>PRK02769 histidine decarboxylase; Provisional
Probab=97.41 E-value=0.00036 Score=55.48 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=45.4
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
..+...+++...|.|+.+++.++|++.+.|+++++|+||.++|+++|+++
T Consensus 108 ~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~ 157 (380)
T PRK02769 108 FPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN 157 (380)
T ss_pred CCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC
Confidence 34557888899999999999999999999999999999999999999875
No 25
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.21 E-value=0.00067 Score=59.55 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=52.2
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSV 77 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst 77 (119)
.|.++++|+.+|.+.-+++...|+.++.||+|++|.+|.++|++++.+. +..+.++..|++|+
T Consensus 577 ~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~---~~~taaV~iT~pst 639 (939)
T TIGR00461 577 HRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH---GDELAAVMVTYPST 639 (939)
T ss_pred CCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc
Confidence 5788999999999999999999999999999999999999999999751 22345555555554
No 26
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.07 E-value=0.00072 Score=59.56 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=51.9
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVE 78 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~ 78 (119)
.+-+++.|+.+|.|..+++.+.|+.++.||+|.+|.+|.++|++++.+. +-.+.++..+++|+.
T Consensus 589 ~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~ 652 (954)
T PRK05367 589 HRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTH 652 (954)
T ss_pred CCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCC
Confidence 3567999999999999999999999999999999999999999988653 113455556666554
No 27
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=96.97 E-value=0.0021 Score=49.17 Aligned_cols=54 Identities=39% Similarity=0.513 Sum_probs=47.6
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~p 118 (119)
.++++....|.+..+++..+|.+++.|++++++.+|+++|++++.++.++|..|
T Consensus 96 ~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~ 149 (345)
T cd06450 96 LVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNP 149 (345)
T ss_pred eEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCc
Confidence 466777889999999999999999999999999999999999999877777544
No 28
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=96.96 E-value=0.0011 Score=53.67 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=43.0
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHHH
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEED 111 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~~ 111 (119)
...+++...|.|+.+++.++|++++.|++|++ ++||+++|+++|+++
T Consensus 139 ~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~~~ 186 (431)
T TIGR01788 139 PNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVDEN 186 (431)
T ss_pred cEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHhhC
Confidence 46899999999999999999999999999986 699999999999764
No 29
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0047 Score=50.24 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=57.6
Q ss_pred ccCceeEEee--cCCCcccCHHHHHHHHHHHHhC--CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHH
Q psy9815 32 LGGVTIRGLP--ADDSYKLRGDALEAAIEEDLKK--GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA 107 (119)
Q Consensus 32 ~~G~~~~~v~--~d~~~~m~~~~L~~~i~~~~~~--g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~ 107 (119)
+.|..-+++. ..++|....-..-++.-+.+-+ ..+.++-..+|||---.|.+.|++|+.|++|++|.+|.++|+++
T Consensus 121 ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k 200 (496)
T COG1003 121 ITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAK 200 (496)
T ss_pred hcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHH
Confidence 4555333332 2334555444444444444422 35678889999999999999999999999999999999999999
Q ss_pred HHHH
Q psy9815 108 IEED 111 (119)
Q Consensus 108 i~~~ 111 (119)
+.+.
T Consensus 201 ~~~~ 204 (496)
T COG1003 201 AEDN 204 (496)
T ss_pred hccc
Confidence 8743
No 30
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=96.77 E-value=0.0019 Score=49.81 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=42.1
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+-.++.++..|+|+.+++...|+.++.||++.++.++++.|++++.+
T Consensus 104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 150 (371)
T PRK13520 104 KPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD 150 (371)
T ss_pred CceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence 34678899999999999999999999999998899999999999864
No 31
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=96.59 E-value=0.0064 Score=49.53 Aligned_cols=47 Identities=26% Similarity=0.198 Sum_probs=40.4
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeec---CCCcccCHHHHHHHHHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE 59 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~---d~~~~m~~~~L~~~i~~ 59 (119)
++.+++++. +|+|+.||+.+.|+..+.|++ ++++.||+++|++++.+
T Consensus 151 gd~VI~p~~-th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~ 200 (444)
T TIGR03531 151 AKYVIWPRI-DQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE 200 (444)
T ss_pred CCEEEEECc-ChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence 467777775 699999999999999888885 45799999999999974
No 32
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=95.96 E-value=0.013 Score=51.63 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=43.9
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+.++++...+|||.-..+.+.|++++.|++|++|++|.++|++++++
T Consensus 578 R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~ 624 (939)
T TIGR00461 578 RNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQ 624 (939)
T ss_pred CCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999999975
No 33
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=95.81 E-value=0.013 Score=52.03 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=43.4
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+-.++.+...|.|..+++.+.|++++.||+|++|.+|.++|++++..
T Consensus 616 r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~ 662 (993)
T PLN02414 616 RNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA 662 (993)
T ss_pred CCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence 45788999999999999999999999999999999999999999974
No 34
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=95.69 E-value=0.013 Score=45.33 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=40.7
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|++..+++...|++++.+|.+.++.++++.|++++.+
T Consensus 108 ~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~ 152 (373)
T TIGR03812 108 NIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152 (373)
T ss_pred EEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhh
Confidence 577889999999999999999999999988999999999998854
No 35
>PRK05367 glycine dehydrogenase; Provisional
Probab=95.56 E-value=0.024 Score=50.18 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=42.8
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+.++....|+|...++.++|++++.|++|++|++|.++|++++++
T Consensus 591 ~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~ 636 (954)
T PRK05367 591 DVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEE 636 (954)
T ss_pred CEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhc
Confidence 3588899999999999999999999999999999999999999975
No 36
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=95.23 E-value=0.048 Score=44.50 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=40.7
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~ 110 (119)
|-.+++...+|.|+.+++.++|++++.|++ ++++.||+++|+++|++
T Consensus 151 gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~ 200 (444)
T TIGR03531 151 AKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE 200 (444)
T ss_pred CCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence 445667777899999999999999999995 56799999999999984
No 37
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=95.03 E-value=0.14 Score=45.74 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=42.3
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+++....|||....+.+.|++++.|++|++|.+|.++|+++|..
T Consensus 618 ~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~ 662 (993)
T PLN02414 618 VCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA 662 (993)
T ss_pred EEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence 678889999999999999999999999999999999999999974
No 38
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=94.82 E-value=0.14 Score=39.43 Aligned_cols=47 Identities=30% Similarity=0.414 Sum_probs=42.2
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+-.+++....|.+..+++...|++++.|++++++.+|++.|+++|.+
T Consensus 104 ~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 150 (371)
T PRK13520 104 KPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDD 150 (371)
T ss_pred CceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence 44577888899999999999999999999999999999999999964
No 39
>KOG2040|consensus
Probab=94.41 E-value=0.25 Score=42.56 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=44.8
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHh
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~ 113 (119)
.+.++-+.+|||--..|.+.|++|..|.+|.+|.+|...|+++-++...
T Consensus 631 nvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~ 679 (1001)
T KOG2040|consen 631 NVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKD 679 (1001)
T ss_pred eeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhh
Confidence 5677789999999999999999999999999999999999999887654
No 40
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=94.00 E-value=0.23 Score=38.47 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=39.2
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCC--cccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~--~~m~~~~L~~~i~~~ 60 (119)
.++++...|++...++...|+.++.+|.+.+ +.++++.|++++.+.
T Consensus 85 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 132 (361)
T cd06452 85 WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEV 132 (361)
T ss_pred EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHH
Confidence 4667789999999889999999999998865 499999999988653
No 41
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=93.95 E-value=0.54 Score=36.42 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEED 111 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~ 111 (119)
..+...+......|-.+++...+|.++..++...|++++.|+++.+ +.+|++.|++++++.
T Consensus 70 ~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 132 (361)
T cd06452 70 EGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEV 132 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHH
Confidence 3455555555556666666777899998899999999999999865 499999999999753
No 42
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=93.76 E-value=0.087 Score=43.06 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=43.5
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.|-+++..+.+|-.---+|.+.|..++.|+||++|.+|.++|+++..+
T Consensus 156 ~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~ 203 (496)
T COG1003 156 HRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAED 203 (496)
T ss_pred cCcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhcc
Confidence 567788889999888888899999999999999999999999999874
No 43
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=93.70 E-value=0.24 Score=39.00 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=40.2
Q ss_pred eeeecCCccccHHHHHhccCceeEEeec--CCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~--d~~~~m~~~~L~~~i~~~ 60 (119)
.+++++..|+|...++...|++++.+|. +..+..+++.|++++.+.
T Consensus 104 ~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 151 (387)
T PRK09331 104 YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV 151 (387)
T ss_pred EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence 4677899999999999999999999998 678999999999998753
No 44
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=93.30 E-value=0.19 Score=38.75 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
|-.+++...+|.+...++...|++++.++.++++.+|.+.|++++++
T Consensus 106 g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~~ 152 (373)
T TIGR03812 106 TPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152 (373)
T ss_pred CcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHhh
Confidence 34577778899999999999999999999999999999999999865
No 45
>KOG0630|consensus
Probab=93.22 E-value=0.23 Score=41.56 Aligned_cols=73 Identities=21% Similarity=0.176 Sum_probs=55.5
Q ss_pred ccCeeeeecCCccccHH-HHHhccCceeEE---eecCC----CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 11 IANLVGYCSDQAHSSVE-RAGLLGGVTIRG---LPADD----SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 11 ~~~lvv~~s~~~H~S~~-ka~~~~G~~~~~---v~~d~----~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
++..++|.|+..|.-.. -+|+-+|+.... ++-.+ .|+||-..+++.++++...|..|+++++..|++-.|-.
T Consensus 229 ~aaPt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~Gqn 308 (838)
T KOG0630|consen 229 LAAPTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQN 308 (838)
T ss_pred hcCceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcch
Confidence 46889999999987544 457778884333 32222 27999999999999999999999999999888765543
Q ss_pred h
Q psy9815 83 L 83 (119)
Q Consensus 83 ~ 83 (119)
-
T Consensus 309 D 309 (838)
T KOG0630|consen 309 D 309 (838)
T ss_pred H
Confidence 3
No 46
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=92.70 E-value=0.56 Score=36.93 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHH
Q psy9815 29 AGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEA 106 (119)
Q Consensus 29 a~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~ 106 (119)
.+.+.|..-..+ +... ...+..++......|-.+++....|.++..++...|++++.++. ++++.+|+++|++
T Consensus 72 lA~~~g~~~~~~-~~g~----t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~ 146 (387)
T PRK09331 72 LAEFLGMDEARV-THGA----REGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAE 146 (387)
T ss_pred HHHHhCCCcEEE-eCCH----HHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHH
Confidence 356677642222 2211 13344555555556666777788899999899999999999998 7789999999999
Q ss_pred HHHHH
Q psy9815 107 AIEED 111 (119)
Q Consensus 107 ~i~~~ 111 (119)
++++.
T Consensus 147 ~l~~~ 151 (387)
T PRK09331 147 KIEEV 151 (387)
T ss_pred HHHHh
Confidence 99764
No 47
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=91.76 E-value=0.63 Score=35.94 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=43.1
Q ss_pred HHHHHHHHHHh---CCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLK---KGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~---~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+.-++..... .|-.+++...+|++. ...+...|.+++.|+.++++++|.+.|++++.+
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 138 (373)
T cd06453 73 AINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE 138 (373)
T ss_pred HHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence 34444444333 455677777788775 344557899999999999999999999999864
No 48
>KOG1383|consensus
Probab=91.69 E-value=0.068 Score=43.82 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=42.7
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 60 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~~ 60 (119)
+..+......|.+.+|+++..++.++.||.+ .+++||+....+.+.+.
T Consensus 170 ~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eN 218 (491)
T KOG1383|consen 170 KPNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDEN 218 (491)
T ss_pred CccccchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccc
Confidence 4556778899999999999999999999999 68999999999988764
No 49
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=91.61 E-value=0.37 Score=39.38 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=41.1
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+++....|++....+...|++++.++++++|.+|.++|++++..
T Consensus 163 ~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~ 207 (481)
T PRK04366 163 EVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE 207 (481)
T ss_pred EEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhccc
Confidence 577788899999999999999999999998899999999998864
No 50
>PRK12566 glycine dehydrogenase; Provisional
Probab=91.54 E-value=0.32 Score=43.27 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=41.1
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+-.+++++..|.+---++...|+.++.||+|++|.+|.++|++.+.+
T Consensus 590 ~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~ 637 (954)
T PRK12566 590 QRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAA 637 (954)
T ss_pred CCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhc
Confidence 356678889999776666788999999999999999999999999864
No 51
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=91.53 E-value=1.5 Score=34.22 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=56.4
Q ss_pred ccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCc
Q psy9815 22 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKL 99 (119)
Q Consensus 22 ~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m 99 (119)
.|-..++.+.+.|..-..+ +... .+.+...+......|-.+++...+|.+.-.++...|++++.++.+ +++.+
T Consensus 53 ~~~~~e~lA~~~g~~~~~i-~~g~----~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~ 127 (370)
T TIGR02539 53 IHDFLEDLAEFLGMDEARV-THGA----REGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKV 127 (370)
T ss_pred HHHHHHHHHHHhCCCceEE-ECCh----HHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCc
Confidence 3444556677788743333 2111 133333444444555556666688888889999999999999986 45899
Q ss_pred CHHHHHHHHHH
Q psy9815 100 RGDALEAAIEE 110 (119)
Q Consensus 100 ~~~~L~~~i~~ 110 (119)
|++.|++++++
T Consensus 128 d~~~l~~~l~~ 138 (370)
T TIGR02539 128 DPEGYGEVIEE 138 (370)
T ss_pred CHHHHHHHHHH
Confidence 99999999975
No 52
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=91.32 E-value=0.67 Score=37.32 Aligned_cols=49 Identities=27% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCCccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
.|...+.+..=|-++-..+..+ |++|..+++|.+|.++.+.|+++|+.+
T Consensus 90 ~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~ 141 (386)
T COG1104 90 KGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD 141 (386)
T ss_pred CCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC
Confidence 4667888888899998888888 999999999999999999999999754
No 53
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=91.21 E-value=0.37 Score=39.38 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=40.9
Q ss_pred eeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
-.++.++..|.+..+.+...|+.++.+|++.++.+|.+.|++++..
T Consensus 162 ~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~~ 207 (481)
T PRK04366 162 TEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVGE 207 (481)
T ss_pred CEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhccc
Confidence 4678889999999999999999999999988899999999988754
No 54
>PRK14012 cysteine desulfurase; Provisional
Probab=91.19 E-value=1 Score=35.55 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=39.8
Q ss_pred hCCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++...+|.++...... .|++++.|++|++|.+|++.|+++|.+
T Consensus 92 ~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~ 143 (404)
T PRK14012 92 KKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD 143 (404)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 4565677778889888766554 499999999999999999999999864
No 55
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=91.10 E-value=0.9 Score=35.49 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHHH
Q psy9815 51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 111 (119)
Q Consensus 51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~~ 111 (119)
.+|.-++... ...|-.+++..-|..+|..+...+|++++-+++| +++.||+++|+++|.+.
T Consensus 51 ~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~ 113 (363)
T PF01041_consen 51 SALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPK 113 (363)
T ss_dssp HHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccC
Confidence 5666666553 3457788899999999999999999999999998 78999999999998753
No 56
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=91.00 E-value=0.48 Score=36.61 Aligned_cols=46 Identities=26% Similarity=0.227 Sum_probs=37.2
Q ss_pred eeeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 14 lvv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
-.+++++..|.+. .+.++..|..++.|+.+.++.++++.|++.+.+
T Consensus 89 ~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 138 (373)
T cd06453 89 DEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE 138 (373)
T ss_pred CEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence 3577888999885 344557789999999998899999999998854
No 57
>PLN02721 threonine aldolase
Probab=90.97 E-value=0.37 Score=36.78 Aligned_cols=45 Identities=29% Similarity=0.337 Sum_probs=37.5
Q ss_pred eeeecCCccccHHH---HHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~k---a~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.|++++.+|++..+ .+...|..++.+|.++++.+|++.|++.+.+
T Consensus 82 ~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 129 (353)
T PLN02721 82 EVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRP 129 (353)
T ss_pred eEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHh
Confidence 46678889988877 3567889999999888899999999999874
No 58
>PRK14012 cysteine desulfurase; Provisional
Probab=90.90 E-value=0.23 Score=39.21 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=36.9
Q ss_pred eeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.|++++..|.|...++.. .|+.++.++.|+++.++++.|++++.+
T Consensus 96 ~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~ 143 (404)
T PRK14012 96 HIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD 143 (404)
T ss_pred EEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 467788889888766554 488999999998999999999998853
No 59
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=90.08 E-value=1.2 Score=34.73 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=38.4
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~ 59 (119)
.++.+...|+|...++...|..++.+|.+ .++.+|++.|++++..
T Consensus 92 ~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~ 138 (370)
T TIGR02539 92 WVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEE 138 (370)
T ss_pred EEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHH
Confidence 46678899999998889999999999876 3589999999999865
No 60
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=89.99 E-value=1.3 Score=35.32 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=40.2
Q ss_pred hCCCccEEeecCcchHHHHHHh----cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~----~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|..+++....|++...+... .|++++.|+++++ ++|.++|+++|..
T Consensus 152 ~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~ 203 (447)
T PRK00451 152 TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDD 203 (447)
T ss_pred cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCC
Confidence 3556678888899999988765 5889999999988 9999999998853
No 61
>PRK12566 glycine dehydrogenase; Provisional
Probab=89.69 E-value=0.62 Score=41.52 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=40.6
Q ss_pred CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 65 KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
.+.++....|||.--.+...|++++.|++|++|.+|.++|++.++
T Consensus 592 ~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~ 636 (954)
T PRK12566 592 DICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAA 636 (954)
T ss_pred CEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhh
Confidence 456777899988888888999999999999999999999999996
No 62
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=89.10 E-value=1.9 Score=33.06 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcch--HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gs--t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+++.-.+......|-.+++....|.+ ....+...|.+++.+++++++.+|.++|++++++
T Consensus 61 ~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 122 (356)
T cd06451 61 GAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ 122 (356)
T ss_pred HHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence 44555555544556556665555665 3466788899999999998889999999999965
No 63
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=88.53 E-value=0.51 Score=37.97 Aligned_cols=46 Identities=24% Similarity=0.197 Sum_probs=40.8
Q ss_pred eeeecCCccccHHHHHhcc---CceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~---G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
-+++|.-=|.|+-..++-+ |+.+..+|+|.+|.++++.|++++..+
T Consensus 93 HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~ 141 (386)
T COG1104 93 HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPD 141 (386)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCC
Confidence 4677888899999999887 999999999999999999999999653
No 64
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=88.37 E-value=2 Score=33.50 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=41.1
Q ss_pred CCccEEeecCcchHHHHHHhcC----ceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLLGG----VTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~~g----~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
|-.+++....|+++..+..++| .+++.+++++++.+|.++|++++..
T Consensus 108 gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 158 (398)
T cd00613 108 RNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSE 158 (398)
T ss_pred CCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCC
Confidence 6677788899999999999998 8999999988889999999998843
No 65
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=87.98 E-value=0.6 Score=35.93 Aligned_cols=48 Identities=42% Similarity=0.564 Sum_probs=37.9
Q ss_pred eeeeecCCccccHHHHHh---ccCceeEEeecCCCcccCHHHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDL 61 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~---~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~ 61 (119)
-.+++.+.+|........ +.|.+++.+++++.|.++++.|++.+.+.-
T Consensus 69 ~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~ 119 (290)
T PF01212_consen 69 ESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHG 119 (290)
T ss_dssp EEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHT
T ss_pred CceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhcc
Confidence 456788889987775543 588999999988779999999999998753
No 66
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=87.64 E-value=5.1 Score=31.46 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=45.9
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHHHHhCC
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~~~~~G 115 (119)
++|-.+..=..+|.|+--+|--.|+++..||- -++++++++.-.+.|++...+|
T Consensus 98 ~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~ 153 (382)
T COG1103 98 KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEG 153 (382)
T ss_pred cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhcc
Confidence 34544555567899999999999999999985 4789999999999999998886
No 67
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=87.56 E-value=2.2 Score=32.85 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+...+......|-.+++..-++......+...|++++.+++++++.+|++.|++++.+
T Consensus 93 ~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~ 151 (356)
T PRK04870 93 LIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE 151 (356)
T ss_pred HHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc
Confidence 33333333334555566667777778888999999999999998899999999999864
No 68
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=87.48 E-value=1.5 Score=34.68 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=36.8
Q ss_pred eeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
-.++++...|.|...+... .|+.++.+|+++++.++++.|++.+.
T Consensus 93 ~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~ 140 (402)
T TIGR02006 93 NHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR 140 (402)
T ss_pred CEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC
Confidence 4577788899998777543 48899999999889999999998874
No 69
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=87.37 E-value=2 Score=33.59 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=43.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHHHhCC
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG 64 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g 64 (119)
+...+.+||+..-||.-.|+++..||..+ .++++++...+.+++...++
T Consensus 103 vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~ 153 (382)
T COG1103 103 VVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEG 153 (382)
T ss_pred EEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999654 69999999999999987765
No 70
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=87.26 E-value=3.1 Score=32.14 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|...+......|-.+++..-+.+.....+...|.+++.++.++++.+|.+.|++++..
T Consensus 88 ~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~ 146 (351)
T PRK14807 88 IIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK 146 (351)
T ss_pred HHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc
Confidence 33444444344555556666666777778889999999999998899999999998864
No 71
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=86.90 E-value=2.8 Score=33.10 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=38.5
Q ss_pred CCCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|-.+++....|.++...... .|++++.|++++++.+|.+.|++++.+
T Consensus 91 ~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 141 (402)
T TIGR02006 91 KGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRD 141 (402)
T ss_pred CCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 455667777889887766543 489999999999999999999998853
No 72
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=86.78 E-value=2.8 Score=33.36 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
++|.-.+......|-.+++..-+++.....+...|++++.|++|+++ ++.++|+++++.
T Consensus 152 ~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~ 210 (431)
T PRK15481 152 DAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQ 210 (431)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc
Confidence 44555555545566666777778888889999999999999998765 999999998854
No 73
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=86.76 E-value=2.3 Score=32.39 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=46.8
Q ss_pred HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~ 109 (119)
.++..++... ...|-.+++...+|.++..++...|++++.+++++ ++.+|.+.|++++.
T Consensus 44 ~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 104 (352)
T cd00616 44 AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT 104 (352)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence 3455555444 24556678888899999999999999999999987 79999999998874
No 74
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=86.74 E-value=2.5 Score=33.42 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=46.3
Q ss_pred HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~ 110 (119)
++|.-++... ...|-.+++..-++.++..+....|++++.+++|++ +.+|+++|++++..
T Consensus 57 ~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~ 118 (376)
T TIGR02379 57 AALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH 118 (376)
T ss_pred HHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence 3444444333 345666777888899999999999999999999866 78999999998864
No 75
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=86.37 E-value=2.6 Score=33.22 Aligned_cols=78 Identities=18% Similarity=0.097 Sum_probs=54.6
Q ss_pred HHHhccCceeEEeecCCCcccCHHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHH
Q psy9815 28 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALE 105 (119)
Q Consensus 28 ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~ 105 (119)
+-+...|..- .+.+. ++ ..+|.-++... ...|-.+++..-++.++..++...|++++.+++|++ +.+|++.|+
T Consensus 41 ~la~~~g~~~-~v~~~-sg---t~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~ 115 (379)
T PRK11658 41 AFCQLTGNQH-AIAVS-SA---TAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIE 115 (379)
T ss_pred HHHHHhCCCe-EEEEC-CH---HHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHH
Confidence 3356677642 12222 11 25566565554 456667777888999999999999999999999754 579999999
Q ss_pred HHHHH
Q psy9815 106 AAIEE 110 (119)
Q Consensus 106 ~~i~~ 110 (119)
+++..
T Consensus 116 ~~i~~ 120 (379)
T PRK11658 116 AAITP 120 (379)
T ss_pred Hhccc
Confidence 98853
No 76
>PLN02721 threonine aldolase
Probab=86.31 E-value=2.5 Score=32.21 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=38.0
Q ss_pred CCCccEEeecCcchHHH---HHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~---~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|-.+++...+|.+... .+...|++++.++.++++.+|+++|+++|++
T Consensus 79 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 129 (353)
T PLN02721 79 RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRP 129 (353)
T ss_pred CCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHh
Confidence 55556666777766655 3567788999999999999999999999974
No 77
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=85.91 E-value=4.6 Score=30.91 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=43.7
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHHHHhCC
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG 64 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~g 64 (119)
.-.+++.+-.|......+...|..++.+|.+ +++.++++.|++.+++...++
T Consensus 93 ~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (363)
T PF00155_consen 93 GDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG 146 (363)
T ss_dssp TSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred cccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence 3357777888999999999999999998854 689999999999999876665
No 78
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=85.87 E-value=3 Score=32.40 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCccEEeecCcchHHHHHHh---cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 64 GKIPFYVNQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 64 g~~p~~v~~t~gst~~~a~~---~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+-.+++....|.+....... .|++++.++++++|.+|.+.|++++.+
T Consensus 86 ~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~ 135 (379)
T TIGR03402 86 KRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD 135 (379)
T ss_pred CCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 44556667777777654433 599999999998899999999998853
No 79
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=85.63 E-value=3.5 Score=32.12 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
|...+......|-.+++..-+++.....+...|++++.++.++++.++.++|++.+.+
T Consensus 101 l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~ 158 (371)
T PRK05166 101 IAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVAR 158 (371)
T ss_pred HHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc
Confidence 3333333334554555556677777788889999999999998899999999998854
No 80
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=85.28 E-value=1.3 Score=35.33 Aligned_cols=45 Identities=22% Similarity=0.250 Sum_probs=37.7
Q ss_pred CeeeeecCCccccHHHHHhc----cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~----~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
+-.+++++..|.+..+++.. .|++++.+|++++ +++.+.|++++.
T Consensus 154 g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~ 202 (447)
T PRK00451 154 RKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD 202 (447)
T ss_pred CCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC
Confidence 34577889999999888765 5889999999888 999999998874
No 81
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=84.95 E-value=3.7 Score=32.08 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=46.9
Q ss_pred HHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~ 110 (119)
.+|.-++... ...|-.+++..-++.++..++...|++++.+++++ ++.+|.+.|++++.+
T Consensus 55 ~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~ 116 (380)
T TIGR03588 55 SALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAA 116 (380)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhc
Confidence 5566665554 34565667777888888899999999999999964 688999999999974
No 82
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=84.93 E-value=1.2 Score=34.85 Aligned_cols=46 Identities=26% Similarity=0.215 Sum_probs=36.3
Q ss_pred eeeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 14 lvv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
-.+++++..|.|. .+++...|..++.+|+++++.++++.|++.+.+
T Consensus 109 ~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 109 DEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 3567778777774 356667899999999998899999999888743
No 83
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=84.91 E-value=1.9 Score=33.61 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=37.4
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 59 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~~ 59 (119)
.--|+++..+..+...+....|...+-+.+| +++.||++.|++++..
T Consensus 65 gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~ 112 (363)
T PF01041_consen 65 GDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITP 112 (363)
T ss_dssp TSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHT
T ss_pred CceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhcc
Confidence 3457788999999999999999999999998 7899999999999864
No 84
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=84.87 E-value=9.4 Score=26.88 Aligned_cols=86 Identities=21% Similarity=0.176 Sum_probs=57.6
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEe
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGL 91 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v 91 (119)
++..++......+....-..++|+++...+.++ .+.++..+.+.+.+|...+ ++.. .+...|.-.|+....+
T Consensus 78 ~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~~-----~~e~~~~i~~~~~~G~~vi--VGg~-~~~~~A~~~gl~~v~i 149 (176)
T PF06506_consen 78 PKIAVVGYPNIIPGLESIEELLGVDIKIYPYDS-----EEEIEAAIKQAKAEGVDVI--VGGG-VVCRLARKLGLPGVLI 149 (176)
T ss_dssp SEEEEEEESS-SCCHHHHHHHHT-EEEEEEESS-----HHHHHHHHHHHHHTT--EE--EESH-HHHHHHHHTTSEEEES
T ss_pred CcEEEEecccccHHHHHHHHHhCCceEEEEECC-----HHHHHHHHHHHHHcCCcEE--ECCH-HHHHHHHHcCCcEEEE
Confidence 566667777777778888899999888887654 5889999999999985543 3333 3456667789887777
Q ss_pred ecCCCCCcCHHHHHHHHHHH
Q psy9815 92 PADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 92 ~~d~~~~m~~~~L~~~i~~~ 111 (119)
.+. .++++++|++.
T Consensus 150 ~sg------~esi~~Al~eA 163 (176)
T PF06506_consen 150 ESG------EESIRRALEEA 163 (176)
T ss_dssp S--------HHHHHHHHHHH
T ss_pred Eec------HHHHHHHHHHH
Confidence 553 35666666554
No 85
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=84.43 E-value=3.9 Score=32.05 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=42.0
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~ 110 (119)
..|-.+++..-++.++..++...|++++.+++|++ +.+|+++|++++.+
T Consensus 69 ~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~ 118 (375)
T PRK11706 69 QPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP 118 (375)
T ss_pred CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC
Confidence 45666788888999999999999999999999866 58999999998853
No 86
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=84.38 E-value=2.2 Score=31.90 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=32.5
Q ss_pred eeeeecCCccccHHHHHhccCceeEEeecCCCcccCH
Q psy9815 14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRG 50 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~ 50 (119)
-.+++++..|.+..+++...|.++..+++++++.++.
T Consensus 84 ~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 120 (350)
T cd00609 84 DEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120 (350)
T ss_pred CEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCcc
Confidence 4577888999999999999999999999998887776
No 87
>PRK06836 aspartate aminotransferase; Provisional
Probab=84.28 E-value=4.4 Score=31.87 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~ 110 (119)
+.|...+......|-.+++..-+++.....+...|++++.++++++ +.+|.+.|++++..
T Consensus 107 ~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~ 167 (394)
T PRK06836 107 GALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP 167 (394)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence 3444444444445555666777777777788889999999999876 88999999998853
No 88
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=84.15 E-value=5.8 Score=30.60 Aligned_cols=60 Identities=15% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchH--HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst--~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..+...+......|-..++........ ...+...|++++.|+.++++.+|.++|++++.+
T Consensus 67 ~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 128 (368)
T PRK13479 67 FSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAA 128 (368)
T ss_pred HHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHh
Confidence 445555555444443334433333333 467788899999999988889999999999864
No 89
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=84.03 E-value=2.8 Score=31.89 Aligned_cols=44 Identities=25% Similarity=0.200 Sum_probs=38.1
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
.++.+...|.+...++...|.+++.++.++ ++.++.+.|++.+.
T Consensus 60 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 104 (352)
T cd00616 60 EVIVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT 104 (352)
T ss_pred EEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence 577888999999999999999999999887 78999999988763
No 90
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=83.99 E-value=3.7 Score=31.64 Aligned_cols=60 Identities=27% Similarity=0.272 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHH----HHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~----~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+.+...+......|-.+++....|+++.. .+...|.+++.++.++++.+|.+.|++++.+
T Consensus 73 ~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~ 136 (376)
T TIGR01977 73 TALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT 136 (376)
T ss_pred HHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence 34555555444556667777777877653 3445599999999998899999999998853
No 91
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=83.85 E-value=4.4 Score=31.39 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCC-CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 108 (119)
Q Consensus 52 ~L~~~i~~~~~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i 108 (119)
.|.-.+......| -.+++..-+++.....+...|+++..++.++++.+|.++|++++
T Consensus 86 ~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~ 143 (351)
T PRK01688 86 GIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL 143 (351)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc
Confidence 3333333333343 45666667888888889999999999999888999999998876
No 92
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=83.83 E-value=1.5 Score=33.19 Aligned_cols=44 Identities=34% Similarity=0.522 Sum_probs=34.5
Q ss_pred eeeecCCccccHHHH---HhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka---~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|++..++ +.+.|++++.+|.+. +.++.+.|++++.+
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~ 119 (338)
T cd06502 73 SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP 119 (338)
T ss_pred eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence 466788899887653 456899999998865 78999999998864
No 93
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=83.75 E-value=4.3 Score=31.04 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=45.9
Q ss_pred CCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHHHHhCC
Q psy9815 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G 115 (119)
.|-.+++..-++......+...|++++.++.+ +++.+|++.|++.+++...++
T Consensus 92 ~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 146 (363)
T PF00155_consen 92 PGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG 146 (363)
T ss_dssp TTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred ccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence 55667888889999999999999999999964 789999999999999876655
No 94
>PLN02651 cysteine desulfurase
Probab=83.47 E-value=3.7 Score=31.83 Aligned_cols=49 Identities=24% Similarity=0.204 Sum_probs=38.1
Q ss_pred hCCCccEEeecCcchHHHHHH---hcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~---~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.++..... ..|++++.+++++++.+|.+.|+++|++
T Consensus 86 ~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 345566777788888765544 3588999999998999999999999864
No 95
>PRK08361 aspartate aminotransferase; Provisional
Probab=83.46 E-value=4.1 Score=31.93 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
+++.-.+......|-.+++..-++......+...|++++.+++++ ++.+|+++|++.++.
T Consensus 104 ~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 165 (391)
T PRK08361 104 EATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK 165 (391)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 344444444444566677777888888888999999999999875 468999999998864
No 96
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=83.28 E-value=2.8 Score=32.52 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=35.4
Q ss_pred eeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
-.++++...|.|....... .|+.++.+|.++++.++++.|++.+.
T Consensus 87 ~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~ 134 (379)
T TIGR03402 87 RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT 134 (379)
T ss_pred CeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC
Confidence 3566778888877654433 58999999998889999999998874
No 97
>PRK12414 putative aminotransferase; Provisional
Probab=83.14 E-value=5 Score=31.45 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-++......+...|.+++.++.++ ++.+|.+.|+++++.
T Consensus 101 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~ 161 (384)
T PRK12414 101 EGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP 161 (384)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCc
Confidence 445555555455666677778888888888899999999999874 578999999998853
No 98
>PTZ00377 alanine aminotransferase; Provisional
Probab=82.54 E-value=9.3 Score=31.06 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=45.0
Q ss_pred HHHHHHHHHH-hCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHHHHh
Q psy9815 52 ALEAAIEEDL-KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 52 ~L~~~i~~~~-~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~~~~ 113 (119)
+|.-.+.... ..|-.+++..-++......+...|.+++.|++++ ++.+|+++|++++.....
T Consensus 150 al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~ 214 (481)
T PTZ00377 150 GIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVR 214 (481)
T ss_pred HHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHh
Confidence 3444444333 3555566667777888888899999999999864 368999999999976443
No 99
>PRK05957 aspartate aminotransferase; Provisional
Probab=82.51 E-value=5.9 Score=31.07 Aligned_cols=59 Identities=27% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|.-.+......|-.+++..-++..........|++++.++.++++.+|.++|+++++.
T Consensus 101 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 159 (389)
T PRK05957 101 AFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP 159 (389)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc
Confidence 34333333334554455555566667777788999999999998899999999998853
No 100
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=82.46 E-value=6 Score=30.37 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=37.3
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..-+++.....+...|++++.++.++++.++.++|++++.
T Consensus 109 ~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 156 (361)
T PRK00950 109 DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT 156 (361)
T ss_pred CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc
Confidence 344445555556666777788899999999988888999999999875
No 101
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=82.37 E-value=3.3 Score=32.35 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=36.9
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
.|+.+...|.+...++...|..++.++.+. ++.++++.|++.+.
T Consensus 71 ~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~ 115 (380)
T TIGR03588 71 RVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLA 115 (380)
T ss_pred EEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhh
Confidence 366777888888888888999999998864 68899999998886
No 102
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=82.29 E-value=5.2 Score=31.25 Aligned_cols=49 Identities=27% Similarity=0.251 Sum_probs=37.9
Q ss_pred hCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.++. ..+...|++++.++++++|.++.+.|++++.+
T Consensus 106 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 158 (403)
T TIGR01979 106 KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTE 158 (403)
T ss_pred CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhcc
Confidence 34555666666776653 55667899999999999999999999998854
No 103
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=81.89 E-value=3.2 Score=31.41 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHH---HHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~---a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
++.-.+......|-.+++...+|.++..+ +.+.|++++.++.++ +.+|.++|++++++
T Consensus 59 a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~ 119 (338)
T cd06502 59 ANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP 119 (338)
T ss_pred HHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence 44445544445566677778888776543 456899999999865 78999999999975
No 104
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=81.87 E-value=7.6 Score=29.91 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCC-ccEEeecCcchH-HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGK-IPFYVNQAHSSV-ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~-~p~~v~~t~gst-~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..+...+......|- +.+.....++.. ...+...|++++.+++++++.+|++.|++++.+
T Consensus 65 ~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 126 (363)
T TIGR02326 65 FAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAA 126 (363)
T ss_pred HHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence 455555544433432 333445555663 566778899999999999999999999999875
No 105
>PRK02948 cysteine desulfurase; Provisional
Probab=81.76 E-value=6.7 Score=30.45 Aligned_cols=48 Identities=27% Similarity=0.205 Sum_probs=37.1
Q ss_pred CCCccEEeecCcchHHHHH---HhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a---~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|-.+++....|.|..... ...|++++.+++++++.+|.+.|++++++
T Consensus 87 ~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~ 137 (381)
T PRK02948 87 NKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP 137 (381)
T ss_pred CCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence 3455666667788876654 44688999999998899999999998853
No 106
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=81.74 E-value=7.7 Score=29.29 Aligned_cols=80 Identities=18% Similarity=0.073 Sum_probs=54.3
Q ss_pred HHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC------CCcC
Q psy9815 27 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS------YKLR 100 (119)
Q Consensus 27 ~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~------~~m~ 100 (119)
++++.+.|..-..+-+. | ....+...+......|-.+++...+|.|+..+..+.|.+++.++++.+ +.++
T Consensus 66 ~~~A~~~ga~~~~~~~~--G--st~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~ 141 (294)
T cd00615 66 ELAARAFGAKHTFFLVN--G--TSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIP 141 (294)
T ss_pred HHHHHHhCCCCEEEEcC--c--HHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCC
Confidence 45567777632222122 1 123444555555566777788888999999999999998888876432 4799
Q ss_pred HHHHHHHHHH
Q psy9815 101 GDALEAAIEE 110 (119)
Q Consensus 101 ~~~L~~~i~~ 110 (119)
++.|++++++
T Consensus 142 ~~~l~~~l~~ 151 (294)
T cd00615 142 PETFKKALIE 151 (294)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 107
>PLN02368 alanine transaminase
Probab=81.18 E-value=12 Score=29.94 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=45.6
Q ss_pred HHHHHHHHHH-hCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHHHH
Q psy9815 52 ALEAAIEEDL-KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDL 112 (119)
Q Consensus 52 ~L~~~i~~~~-~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~~~ 112 (119)
.|..++.... ..|-.+++..=+.......+...|.+++.|++++ ++.+|.++|++++++..
T Consensus 142 al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~ 205 (407)
T PLN02368 142 GVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQAR 205 (407)
T ss_pred HHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHh
Confidence 3444444443 3565667777778888888999999999999864 48899999999997543
No 108
>PRK09082 methionine aminotransferase; Validated
Probab=81.17 E-value=7 Score=30.57 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~ 110 (119)
.+|.-.+......|-.+++..-++++....+...|.++..++.+ +++.+|+++|+++++.
T Consensus 102 ~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (386)
T PRK09082 102 EALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP 162 (386)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence 34455554444566667777888889999999999999999996 4689999999988853
No 109
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=81.09 E-value=7.8 Score=30.41 Aligned_cols=59 Identities=27% Similarity=0.277 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~L~~~i~~ 110 (119)
++.-.+......|-.+++..-+++.....+...|.++..++++++ +.+|.+.|++++++
T Consensus 103 al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (391)
T PRK07309 103 ALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILE 162 (391)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhc
Confidence 344444443445555666677777788888899999999998764 68999999999864
No 110
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=80.76 E-value=3.2 Score=31.81 Aligned_cols=44 Identities=7% Similarity=-0.047 Sum_probs=34.1
Q ss_pred eeecCCcccc--HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S--~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+++++..|++ ....+...|.+++.+|.++.+.++++.|++.+.+
T Consensus 77 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~ 122 (356)
T cd06451 77 VLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ 122 (356)
T ss_pred EEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence 4445566776 3466778899999999988889999999988854
No 111
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=80.22 E-value=8.3 Score=30.25 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=37.2
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..-+.+.....+...|+++..++.++++.++.++|+++++
T Consensus 125 ~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~ 172 (380)
T PLN03026 125 DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE 172 (380)
T ss_pred CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHh
Confidence 345445555556666667778889999999998889999999999884
No 112
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=80.09 E-value=8.8 Score=29.71 Aligned_cols=58 Identities=29% Similarity=0.337 Sum_probs=44.8
Q ss_pred HHHHHHHHH---HhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEED---LKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~---~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
.++..+... ...|-..+++...|.++. ..+...|++++.++.+.++.++.+.++++|.
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~ 137 (371)
T PF00266_consen 73 ALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN 137 (371)
T ss_dssp HHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence 555555544 466777888888888887 2333568999999999999999999999995
No 113
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=79.85 E-value=4 Score=31.98 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=37.4
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~ 58 (119)
.|+++..+|.+...++...|..++.+++|++ +.++++.|++++.
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~ 117 (375)
T PRK11706 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIEAAIT 117 (375)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcC
Confidence 4677889999999999999999999988865 6899999998764
No 114
>PLN02651 cysteine desulfurase
Probab=79.77 E-value=4.6 Score=31.28 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=36.4
Q ss_pred eeeeecCCccccHHHHHh---ccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~---~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
-.+++++..|.|...... ..|+.++.+|.++++.++++.|++++.+
T Consensus 89 ~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 137 (364)
T PLN02651 89 KHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP 137 (364)
T ss_pred CEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence 357778888988765543 3578899999988899999999988853
No 115
>PRK02948 cysteine desulfurase; Provisional
Probab=79.40 E-value=4.9 Score=31.20 Aligned_cols=45 Identities=27% Similarity=0.183 Sum_probs=36.0
Q ss_pred eeeeecCCccccHHHHH---hccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~---~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
-.++++...|.|..... ...|..++.+|+++++.++++.|++.+.
T Consensus 89 ~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~ 136 (381)
T PRK02948 89 KHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT 136 (381)
T ss_pred CEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC
Confidence 45777888888876654 4568899999998889999999998774
No 116
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=79.12 E-value=5 Score=30.94 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=33.4
Q ss_pred eeeecCCcccc-HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S-~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+++.+...|.+ +.+.+...|+.++.+|++.++.++++.|++.+.+
T Consensus 81 vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~ 126 (363)
T TIGR02326 81 LLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAA 126 (363)
T ss_pred EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence 34444444444 3466777899999999998899999999998765
No 117
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=79.11 E-value=5.4 Score=32.49 Aligned_cols=46 Identities=20% Similarity=0.139 Sum_probs=40.6
Q ss_pred eeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
=.+.+.+-+++....+....|+++..||+|+ .-|++++|++.+++.
T Consensus 180 d~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~ 225 (459)
T COG1167 180 DTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPEALEEALAQW 225 (459)
T ss_pred CEEEEcCCCcHHHHHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhc
Confidence 4577888899999999999999999999995 579999999999875
No 118
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=79.10 E-value=7.9 Score=29.51 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..-+++.....+...|++++.+++++++.+|.+.|++++.
T Consensus 93 ~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~ 140 (346)
T TIGR01141 93 EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID 140 (346)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC
Confidence 445455555555655666778889999999999889999999998763
No 119
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=78.84 E-value=7.8 Score=28.95 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCH--HHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRG--DALEAA 107 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~--~~L~~~ 107 (119)
.++...+......|..+++....|++...++...|.+++.++.++++.++. +.+++.
T Consensus 70 ~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 128 (350)
T cd00609 70 EALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAA 128 (350)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhh
Confidence 444555555555677888999999999999999999999999988888876 455443
No 120
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=78.73 E-value=9.3 Score=29.58 Aligned_cols=60 Identities=18% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-+.......+...|.++..++.++++.+|+++|++++.+
T Consensus 99 ~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (368)
T PRK03317 99 EILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE 158 (368)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc
Confidence 344444444444555555556666667777788888888888887889999999999864
No 121
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=78.35 E-value=7.9 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=37.7
Q ss_pred hCCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.+. ...+...|++++.+++++++.+|.+.|++++.+
T Consensus 104 ~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 104 QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 3455566677777663 345677899999999998899999999998854
No 122
>PTZ00376 aspartate aminotransferase; Provisional
Probab=78.14 E-value=19 Score=28.37 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=34.4
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEED 60 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~ 60 (119)
++..+-+.......++..|..++.+|.+ +++.+|.+.|++++++.
T Consensus 127 Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 127 VYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred EEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC
Confidence 4445555666677888999999999983 35899999999988653
No 123
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=77.85 E-value=16 Score=30.16 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHH-hcCceeEEeecC--CCCCcCHHHHHHHHHHHHh
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~-~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~ 113 (119)
++|.-.+......|-.+++..-+++.....+. ..|++++.|+++ +++.++.++|++++++..+
T Consensus 130 ~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~ 195 (496)
T PLN02376 130 GANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQE 195 (496)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHh
Confidence 44555555444556555555556666776666 489999999985 5689999999998876543
No 124
>PRK06108 aspartate aminotransferase; Provisional
Probab=77.73 E-value=11 Score=29.02 Aligned_cols=59 Identities=25% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC---CCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~---~~~m~~~~L~~~i~ 109 (119)
++|.-.+......|-.+++..-++......+..+|++++.++.++ ++.+|.++|++.+.
T Consensus 95 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 156 (382)
T PRK06108 95 QALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT 156 (382)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC
Confidence 344444444444566677777888888889999999999999863 46799999998875
No 125
>PRK08912 hypothetical protein; Provisional
Probab=77.64 E-value=12 Score=29.16 Aligned_cols=58 Identities=21% Similarity=0.118 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~ 109 (119)
+|...+......|-.+++..-+++.....+...|.+++.++.++ ++.++.+.|++.+.
T Consensus 99 al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (387)
T PRK08912 99 ALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS 157 (387)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC
Confidence 44444444444566677778888889999999999999999864 68899999998774
No 126
>PTZ00377 alanine aminotransferase; Provisional
Probab=77.48 E-value=32 Score=27.96 Aligned_cols=46 Identities=20% Similarity=0.071 Sum_probs=36.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDL 61 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~ 61 (119)
|++.+-.+.+....+...|..++.+|+++ .+.++++.|++++....
T Consensus 166 Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~ 213 (481)
T PTZ00377 166 VMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAV 213 (481)
T ss_pred EEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHH
Confidence 55566667777777888999999999874 36899999999987643
No 127
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=77.46 E-value=12 Score=28.22 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCccE-EeecCcch-HHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPF-YVNQAHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~-~v~~t~gs-t~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..+...+......+-..+ .....+++ ....+...|++++.++.++++.+|.++|++++.+
T Consensus 61 ~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 122 (355)
T TIGR03301 61 FAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAA 122 (355)
T ss_pred HHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHh
Confidence 456666655443332333 33344554 4566788999999999988889999999999875
No 128
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.39 E-value=6.3 Score=31.66 Aligned_cols=79 Identities=20% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHhccCce-eEEeecCCCcccCHHHHHHHHHHH-HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC-CCcCHHH
Q psy9815 27 ERAGLLGGVT-IRGLPADDSYKLRGDALEAAIEED-LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDA 103 (119)
Q Consensus 27 ~ka~~~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~-~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~-~~m~~~~ 103 (119)
++-+..+|.. .+.+.+ . .++|.=++... ...|-.+++..-|.-+|..+....|.+.+-|++|++ +-||++.
T Consensus 41 ~~~ae~~G~k~ava~~s-g-----T~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ 114 (374)
T COG0399 41 QAFAEYLGVKYAVAVSS-G-----TAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDL 114 (374)
T ss_pred HHHHHHhCCCeEEEecC-h-----HHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHH
Confidence 3446678874 445422 2 25555555421 566777888889999999999999999999999955 9999999
Q ss_pred HHHHHHHH
Q psy9815 104 LEAAIEED 111 (119)
Q Consensus 104 L~~~i~~~ 111 (119)
||++|...
T Consensus 115 ie~aIt~~ 122 (374)
T COG0399 115 IEAAITPR 122 (374)
T ss_pred HHHHcccC
Confidence 99999753
No 129
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=77.33 E-value=8.5 Score=31.36 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
+|.-.+.-....|-.+.+=.-++..........|+++..||+|++ -||+++|++.+++.
T Consensus 167 al~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~-G~~~e~le~~~~~~ 225 (459)
T COG1167 167 ALDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDED-GIDPEALEEALAQW 225 (459)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCC-CCCHHHHHHHHhhc
Confidence 344333333345655566666778888899999999999999865 69999999999874
No 130
>PRK07682 hypothetical protein; Validated
Probab=77.32 E-value=8.8 Score=29.80 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
.+|.-.+......|-.+++..-+++.....+...|.+++.++++ +++.+|.++|++++.+
T Consensus 92 ~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 153 (378)
T PRK07682 92 QALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA 153 (378)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc
Confidence 45555555545566677788888888888999999999999875 4688999999998753
No 131
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=77.15 E-value=23 Score=27.73 Aligned_cols=44 Identities=20% Similarity=0.232 Sum_probs=33.5
Q ss_pred eeecCCccccHHHHHhccCceeEEeec-C-CCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~-d-~~~~m~~~~L~~~i~~ 59 (119)
|+..+-+......++...|.+++.+|. + +++.++++.|++.+.+
T Consensus 123 Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~ 168 (396)
T PRK09257 123 VWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQ 168 (396)
T ss_pred EEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHh
Confidence 445555555666777889999999997 3 4579999999988765
No 132
>PLN00175 aminotransferase family protein; Provisional
Probab=76.86 E-value=12 Score=29.76 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~ 110 (119)
+|.-.+......|-.+++..-++......+...|.+++.|+.+ +++.++.+.|++++..
T Consensus 127 al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~ 186 (413)
T PLN00175 127 AIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS 186 (413)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc
Confidence 3444444444566667777777888888899999999999987 4589999999998753
No 133
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=76.80 E-value=12 Score=28.70 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHH
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA 106 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~ 106 (119)
|.-.+......|-.+++..-++......+...|++++.++.++++.+|.++|++
T Consensus 90 l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 143 (353)
T PRK05387 90 LAHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR 143 (353)
T ss_pred HHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh
Confidence 333333333445444444445555666678899999999999889999999864
No 134
>PLN02231 alanine transaminase
Probab=76.77 E-value=19 Score=30.03 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh-CCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHHHhCC
Q psy9815 52 ALEAAIEEDLK-KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 52 ~L~~~i~~~~~-~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~~~~G 115 (119)
++.-.+..... .|-.+++..-+.......+...|.+++.++.+++ +.+|.++|++++++....|
T Consensus 203 ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~ 269 (534)
T PLN02231 203 AVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKG 269 (534)
T ss_pred HHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcC
Confidence 33344443332 3555666677777888888899999999998753 6899999999998765554
No 135
>PRK06207 aspartate aminotransferase; Provisional
Probab=76.74 E-value=13 Score=29.46 Aligned_cols=60 Identities=18% Similarity=0.081 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC-----CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-----DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-----~~~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-+++.....+...|.+++.|+.+ +++.+|.+.|++++.+
T Consensus 113 ~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~ 177 (405)
T PRK06207 113 GALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA 177 (405)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh
Confidence 34555555555566667777777888888889999999999875 3688999999998864
No 136
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=76.72 E-value=4.8 Score=31.29 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.4
Q ss_pred eeeecCCccccHHHHHhccC----ceeEEeecCCCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGG----VTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G----~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.|+.++..|.+...+...+| ..++.+|.++.+.++.+.|++++.
T Consensus 110 ~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 157 (398)
T cd00613 110 KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS 157 (398)
T ss_pred EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC
Confidence 56678889999888888777 888889988778899998888763
No 137
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=76.58 E-value=10 Score=29.70 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=35.6
Q ss_pred eeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|.|. ...+...|+.++.+|.+.++.++++.|++++.+
T Consensus 108 ~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 156 (398)
T TIGR03392 108 EIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTP 156 (398)
T ss_pred EEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhcc
Confidence 566778888763 455677899999999988888999999988743
No 138
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=76.53 E-value=5.9 Score=30.43 Aligned_cols=45 Identities=29% Similarity=0.242 Sum_probs=35.9
Q ss_pred eeeeecCCccccHHHHH---hccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~---~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
-.++++...|.|..... ...|+.++.+|.++++.++++.|++.+.
T Consensus 89 ~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 89 KHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 46778888898876553 3358899999998889999999988874
No 139
>KOG2040|consensus
Probab=76.45 E-value=6.3 Score=34.41 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=44.0
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhC
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 63 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~ 63 (119)
.+-+++..-.+|-.---+|.+.|+.++.|.+|.+|.+|...|+.+.++...+
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~~~ 680 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHKDN 680 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhhhh
Confidence 3566777788888877788999999999999999999999999988776443
No 140
>PRK05764 aspartate aminotransferase; Provisional
Probab=76.40 E-value=12 Score=29.01 Aligned_cols=58 Identities=28% Similarity=0.200 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~ 109 (119)
++...+......|-.+++..-+++.....+...|.+++.++.+ +.+.+|++.|+++++
T Consensus 103 a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 103 ALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred HHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 3333444434455566777778888888999999999999986 347899999999885
No 141
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=76.24 E-value=4.8 Score=30.40 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=36.1
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCC------cccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS------YKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~------~~m~~~~L~~~i~~ 59 (119)
.|+.+...|.|+..++.+.|...+.++.+.+ +.++++.+++++.+
T Consensus 101 ~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~ 151 (294)
T cd00615 101 KILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIE 151 (294)
T ss_pred EEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHh
Confidence 5667788999999999999998877766432 47899999998864
No 142
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=76.23 E-value=8 Score=27.26 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=41.4
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCc----ccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCce
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSY----KLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVT 87 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~----~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~ 87 (119)
+.++-+..+........-+.--|+++..++..... .+..+.+.++++-.......|+.+.+.+|.-.+|..++-++
T Consensus 34 KTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lR 113 (164)
T PF03162_consen 34 KTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLR 113 (164)
T ss_dssp SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHH
Confidence 44555555545444445556678888888776543 46778888887765555567999999999999998877663
No 143
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=75.83 E-value=9.7 Score=29.82 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=35.2
Q ss_pred eeeecCCcccc----HHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S----~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.+++++..|.| ..+.+...|+.++.+|.+.++.++++.|++.+.
T Consensus 111 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 158 (401)
T PRK10874 111 EIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELIT 158 (401)
T ss_pred EEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcC
Confidence 46677788866 345567789999999998888999999998874
No 144
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=75.78 E-value=8.5 Score=29.62 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=33.9
Q ss_pred eeeecCCccccHH----HHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~----ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.+++++..|.+.. ..+...|..++.++.+.++.++++.|++++.
T Consensus 88 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~ 135 (376)
T TIGR01977 88 HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK 135 (376)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC
Confidence 4666777887764 3445568999999988888999999998874
No 145
>PRK09105 putative aminotransferase; Provisional
Probab=75.67 E-value=12 Score=29.34 Aligned_cols=56 Identities=16% Similarity=-0.003 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA 107 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~ 107 (119)
.+.-.+......|-.+++..-+++.....+...|.+++.++.++++.+|.+.|++.
T Consensus 107 ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~ 162 (370)
T PRK09105 107 PLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA 162 (370)
T ss_pred HHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc
Confidence 34444444444565667777788888889999999999999988899999998765
No 146
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=75.66 E-value=14 Score=28.67 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=35.1
Q ss_pred ccEEeecCcchHHHHH---HhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a---~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+++....|.|..... ...|++++.|++++++.+|.+.|++++..
T Consensus 92 ~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~ 139 (382)
T TIGR03403 92 HIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE 139 (382)
T ss_pred EEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc
Confidence 4556666777776553 34688999999999999999999998854
No 147
>PLN02656 tyrosine transaminase
Probab=75.65 E-value=15 Score=29.15 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
++|.-.+......|-.+++..-+++.....+...|++++.++++ +++.+|.++|+++++.
T Consensus 107 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 168 (409)
T PLN02656 107 QAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ 168 (409)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc
Confidence 34444444444566667777778888888889999999999985 3478999999988753
No 148
>PRK03321 putative aminotransferase; Provisional
Probab=75.60 E-value=9.2 Score=29.32 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=35.9
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++...+.......+...|.+++.++.++++.++.+.+++++..
T Consensus 96 ~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~ 144 (352)
T PRK03321 96 GPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAITD 144 (352)
T ss_pred CCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc
Confidence 4454444444455555667788899999999987789999999988853
No 149
>PRK07777 aminotransferase; Validated
Probab=75.11 E-value=12 Score=29.28 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC---CCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~---~~m~~~~L~~~i~~ 110 (119)
++|.-++......|-.+++..-+++.....+...|.+++.++.+++ +.+|++.|++++.+
T Consensus 96 ~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (387)
T PRK07777 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP 158 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc
Confidence 3444444444445556666777788888889999999999988654 57999999988753
No 150
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=74.75 E-value=11 Score=29.42 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=36.9
Q ss_pred hCCCccEEeecCcchHH----HHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.++. ..+...|++++.++.++ ++.++.+.|++++..
T Consensus 102 ~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~ 155 (397)
T TIGR01976 102 GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSP 155 (397)
T ss_pred CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCC
Confidence 44555666666776654 45677899999999876 689999999998853
No 151
>PRK08636 aspartate aminotransferase; Provisional
Probab=74.62 E-value=16 Score=28.78 Aligned_cols=62 Identities=16% Similarity=0.309 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDL 112 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~ 112 (119)
++|.-.+......|-.+++..-+.......+...|.++..|+++ +++.+|.++|.+.+++..
T Consensus 106 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~ 169 (403)
T PRK08636 106 EGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKAL 169 (403)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHH
Confidence 44555555544566666677777777888899999999999874 557999998766665543
No 152
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=74.28 E-value=14 Score=29.32 Aligned_cols=92 Identities=20% Similarity=0.209 Sum_probs=63.0
Q ss_pred CeeeeecCCccccHHHHHhccC-ce--eEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeE
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGG-VT--IRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIR 89 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G-~~--~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~ 89 (119)
.+.-|+..+...-.++.+...| .. .+.+ .. -.-+.|+..+..-...|-.+++..-|.+.-...+...|.+++
T Consensus 50 ~~~rYPd~~~~~l~~a~a~~~~~~~~~~V~~-gn----Gsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~ 124 (356)
T COG0079 50 KLNRYPDPDYRELRAALAEYYGVVDPENVLV-GN----GSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVV 124 (356)
T ss_pred hhccCCCCcHHHHHHHHHHHhCCCCcceEEE-cC----ChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEE
Confidence 4556666643333333444555 32 2222 11 112445555555556666788888999999999999999999
Q ss_pred EeecCCCCCcCHHHHHHHHHH
Q psy9815 90 GLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 90 ~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|+.++ +.+|.+++.+++.+
T Consensus 125 ~v~~~~-~~~d~~~~~~~~~~ 144 (356)
T COG0079 125 KVPLKE-FRLDLDAILAAIRD 144 (356)
T ss_pred Eecccc-cccCHHHHHHhhhc
Confidence 999988 99999999998876
No 153
>PRK08960 hypothetical protein; Provisional
Probab=74.19 E-value=13 Score=29.07 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-++......+...|.++..++++++ +.+|.+.|++.+++
T Consensus 103 ~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (387)
T PRK08960 103 GALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA 164 (387)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc
Confidence 3444444444456666777788888888888999999999998654 58999999988764
No 154
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=74.16 E-value=15 Score=27.74 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=28.5
Q ss_pred HHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 26 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 26 ~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
...++...|..++.++.++.+.++++.|++.+.+
T Consensus 89 ~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 122 (355)
T TIGR03301 89 LAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAA 122 (355)
T ss_pred HHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHh
Confidence 4566778899999999887889999999998864
No 155
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=74.14 E-value=12 Score=29.05 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
+.|...+......|-.+++..-+.+.....+...|.+++.+++++ .+.+|.++|++++.+
T Consensus 102 ~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~ 163 (383)
T TIGR03540 102 EGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK 163 (383)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc
Confidence 445555554445565666666777778888889999999999864 366899999988753
No 156
>KOG0256|consensus
Probab=74.05 E-value=5.6 Score=32.61 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=26.3
Q ss_pred CceeEEeec--CCCCCcCHHHHHHHHHHHHhCCCC
Q psy9815 85 GVTIRGLPA--DDSYKLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 85 g~~~~~v~~--d~~~~m~~~~L~~~i~~~~~~G~~ 117 (119)
|+++..|.+ .+.++++.++||+++++.++.|+-
T Consensus 192 gveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~k 226 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITVEALEAALNQARKLGLK 226 (471)
T ss_pred CceEEEEEeecCCCccccHHHHHHHHHHHHHhCCc
Confidence 446666655 466999999999999999998864
No 157
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=73.93 E-value=16 Score=29.56 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=41.0
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++..-++.++..+....|.+++.++++ +++.+|+++|++++..
T Consensus 109 ~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~ 158 (438)
T PRK15407 109 KPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP 158 (438)
T ss_pred CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc
Confidence 345567777889999999999999999999987 5789999999998853
No 158
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=73.63 E-value=15 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=36.8
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..-+.+.....+...|.+++.++++ ++.+|.+.|++++.
T Consensus 103 ~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~ 149 (359)
T PRK03158 103 NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAID 149 (359)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcC
Confidence 445555555666777778888999999999997 67899999988774
No 159
>PLN02368 alanine transaminase
Probab=73.51 E-value=45 Score=26.70 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=33.9
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEED 60 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~ 60 (119)
++..+-........+...|..++.+|+++ ++.++.+.|++.+...
T Consensus 158 Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~ 204 (407)
T PLN02368 158 VLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQA 204 (407)
T ss_pred EEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHH
Confidence 33445555566677888899999999875 4889999999998754
No 160
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=73.48 E-value=15 Score=28.13 Aligned_cols=45 Identities=29% Similarity=0.272 Sum_probs=35.1
Q ss_pred CccEEeecCcchHHHHH---HhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 65 KIPFYVNQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 65 ~~p~~v~~t~gst~~~a---~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..+++....|.|..... ...|++++.|++++++.+|+++|+++++
T Consensus 89 ~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~ 136 (353)
T TIGR03235 89 KHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR 136 (353)
T ss_pred CeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC
Confidence 44666677788765553 3458899999999889999999999885
No 161
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=73.33 E-value=6.7 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred eeeecCCccccHHHHH---hccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~---~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|.|..... ...|+.++.+|.++++.++.+.|++++..
T Consensus 92 ~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~ 139 (382)
T TIGR03403 92 HIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE 139 (382)
T ss_pred EEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc
Confidence 4777777887776654 34788999999998899999999888753
No 162
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=73.27 E-value=17 Score=28.48 Aligned_cols=59 Identities=25% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhC---CCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKK---GKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~---g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
.|.-.+...... |-.+++..-+.......+...|.++..||+++ ++.+|+++|++++.+
T Consensus 102 al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~ 165 (396)
T PRK09147 102 ALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA 165 (396)
T ss_pred HHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh
Confidence 344444443344 44445555556667788889999999999864 368999999887753
No 163
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=73.15 E-value=4.7 Score=31.02 Aligned_cols=50 Identities=36% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCccEEeecCcchHHH-HH--HhcCceeEEeecCCCCCcCHHHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVER-AG--LLGGVTIRGLPADDSYKLRGDALEAAIEEDL 112 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~-~a--~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~ 112 (119)
.+-.+++...+|-.+.. ++ .+.|.+++.|++++.|+|+++.|++.+++..
T Consensus 67 ~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~ 119 (290)
T PF01212_consen 67 PGESVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHG 119 (290)
T ss_dssp TTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHT
T ss_pred cCCceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhcc
Confidence 33345555556654432 22 4688999999998889999999999998743
No 164
>PRK08068 transaminase; Reviewed
Probab=73.12 E-value=13 Score=29.07 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
.+...+......|-.+++..-+++....++...|++++.+++++ .+.+|.++|++++.
T Consensus 106 ~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 165 (389)
T PRK08068 106 GLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA 165 (389)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc
Confidence 44444444445565667777788888899999999999999974 46789999998875
No 165
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=73.00 E-value=6.9 Score=30.14 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=36.2
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
++..+-++.....++...|+.++.+|.++++.++++.|++.+.+
T Consensus 108 vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~ 151 (356)
T PRK04870 108 VLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE 151 (356)
T ss_pred EEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc
Confidence 44556677777778889999999999988889999999988754
No 166
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=72.78 E-value=20 Score=27.92 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=36.6
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~~ 110 (119)
.+++..-+.+.....+...|+++..++.++ ++.+|+++|++++++
T Consensus 118 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 163 (374)
T PRK02610 118 SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ 163 (374)
T ss_pred eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence 355556666778888899999999999875 489999999999865
No 167
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=72.29 E-value=14 Score=29.02 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 63 ~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|-.+++....|.+. ...+...|++++.+++++++.++.++|++++.+
T Consensus 112 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 163 (406)
T PRK09295 112 AGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDE 163 (406)
T ss_pred CcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCC
Confidence 454566666666554 344566799999999999999999999998853
No 168
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=71.86 E-value=14 Score=28.97 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+.+...+......|-.+++..-+.......+...|++++.|+.++ +.+|.++|++++.+
T Consensus 92 e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~-~~~d~~~l~~~~~~ 150 (366)
T PRK01533 92 EVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNN-GVYDLDEISSVVDN 150 (366)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCC-CCcCHHHHHHHhCc
Confidence 334444444344555556666677778888999999999999964 57999999988753
No 169
>PRK05942 aspartate aminotransferase; Provisional
Probab=71.79 E-value=16 Score=28.56 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
.|...+......|-.+++..-+++.....+...|.+++.++.|+ ++.+|.++|++++.
T Consensus 109 al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 168 (394)
T PRK05942 109 GLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA 168 (394)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc
Confidence 34444444444565667777777777777888999999999874 46799999998875
No 170
>PLN02409 serine--glyoxylate aminotransaminase
Probab=71.68 E-value=11 Score=29.83 Aligned_cols=44 Identities=7% Similarity=-0.136 Sum_probs=33.0
Q ss_pred eeecCCccccH--HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~--~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
++.++..|++. ...+...|.+++.++.+.....+++.|++++.+
T Consensus 87 Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~ 132 (401)
T PLN02409 87 VVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQ 132 (401)
T ss_pred EEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhh
Confidence 44555677665 355677899999998876666899999988875
No 171
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=71.58 E-value=28 Score=28.26 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=37.7
Q ss_pred hCCCccEEeecCcchHHHHHH-hcCceeEEeecC--CCCCcCHHHHHHHHHHHHhCCC
Q psy9815 62 KKGKIPFYVNQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~-~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
..|-.+++..-..+....... -.|++++.|+++ +++.++.++|++++++..+.|.
T Consensus 142 ~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~ 199 (447)
T PLN02607 142 DPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANI 199 (447)
T ss_pred CCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCC
Confidence 345444444445555655555 368889888886 4467999999999988766654
No 172
>PRK05957 aspartate aminotransferase; Provisional
Probab=71.58 E-value=41 Score=26.29 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=32.4
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
++.++-.+......+...|+.++.+|.++++.++.+.|++.+.
T Consensus 116 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 158 (389)
T PRK05957 116 IILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAIT 158 (389)
T ss_pred EEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcC
Confidence 4445544555555567789999999998888999999998874
No 173
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=71.56 E-value=25 Score=28.64 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCCccEEeecCcchHHHHHH-hcCceeEEeecC--CCCCcCHHHHHHHHHHHHhCC
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~gst~~~a~-~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~~~~G 115 (119)
|.-.+......|-.+++..-+.......+. ..|.+++.|+++ +++.++.++|++++++..+.|
T Consensus 124 l~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~ 189 (468)
T PLN02450 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLN 189 (468)
T ss_pred HHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcC
Confidence 434433333445444444455566666666 589999999984 567889999999998765444
No 174
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=71.52 E-value=4.5 Score=31.87 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=34.0
Q ss_pred eeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.+++++..|.|. ...+...|+.++.+|.+.++.++.+.|++++.
T Consensus 115 ~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~ 162 (406)
T PRK09295 115 NIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFD 162 (406)
T ss_pred EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcC
Confidence 466667767553 44566789999999998889999999988874
No 175
>KOG1383|consensus
Probab=71.40 E-value=2.5 Score=34.93 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=38.9
Q ss_pred EEeecCcchHHHHHHhcCceeEEeecC-CCCCcCHHHHHHHHHHH
Q psy9815 68 FYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 111 (119)
Q Consensus 68 ~~v~~t~gst~~~a~~~g~~~~~v~~d-~~~~m~~~~L~~~i~~~ 111 (119)
.+....|-+.+++++..++.++.|+.+ ++++||+..+.+.+.+.
T Consensus 174 v~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~eN 218 (491)
T KOG1383|consen 174 VTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDPGKVVRMIDEN 218 (491)
T ss_pred cchHHHHHHHHHHHhhEEEEEEeeeccccceEecHHHHHHHhccc
Confidence 445677899999999999999999999 77999999999998764
No 176
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=71.35 E-value=44 Score=25.64 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=36.2
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~ 59 (119)
.|++.+-.+.....++...|.+++.++.++ .+.++++.+++++.+
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 135 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE 135 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh
Confidence 455667778888888999999999999863 466899999988754
No 177
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=71.30 E-value=19 Score=28.10 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=38.3
Q ss_pred hCCCccEEeecCcchH----HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst----~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.+. ...+...|++++.|++++++.+|.+.|++++..
T Consensus 107 ~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~ 159 (401)
T PRK10874 107 QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITP 159 (401)
T ss_pred CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCc
Confidence 3555677777777664 345677899999999998899999999998853
No 178
>PRK09082 methionine aminotransferase; Validated
Probab=71.21 E-value=34 Score=26.67 Aligned_cols=44 Identities=18% Similarity=0.097 Sum_probs=35.9
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~ 58 (119)
.|+..+-.|.+...+++..|.++..+|.+ +++.++++.+++.+.
T Consensus 117 ~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~ 161 (386)
T PRK09082 117 EVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS 161 (386)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC
Confidence 35566778888888888899999999986 368899999988774
No 179
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=70.58 E-value=18 Score=28.60 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-++......+..+|+++..++.+ +++.+|.+.|+++++.
T Consensus 115 ~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 176 (412)
T PTZ00433 115 HAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD 176 (412)
T ss_pred HHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc
Confidence 34444444444456566677777888899999999999999985 3578999999988754
No 180
>PLN02231 alanine transaminase
Probab=69.99 E-value=60 Score=27.12 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=35.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHHHHhC
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKK 63 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~ 63 (119)
|++.+-.+.....++...|..++.++.++ ++.++++.|++++++...+
T Consensus 219 Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~ 268 (534)
T PLN02231 219 ILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSK 268 (534)
T ss_pred EEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhc
Confidence 34444455555566778888999999875 4799999999999775544
No 181
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=69.93 E-value=35 Score=25.93 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=33.5
Q ss_pred ccCc-eeEEeecCCCcccCHHHHHHHHHHHHh-CCCccEEeecCcc
Q psy9815 32 LGGV-TIRGLPADDSYKLRGDALEAAIEEDLK-KGKIPFYVNQAHS 75 (119)
Q Consensus 32 ~~G~-~~~~v~~d~~~~m~~~~L~~~i~~~~~-~g~~p~~v~~t~g 75 (119)
+-|+ -....|-++++.+|.+.+++.++.... .|..-+++..+.|
T Consensus 4 ~~Gv~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstG 49 (293)
T PRK04147 4 LKGVYAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTG 49 (293)
T ss_pred CCceeeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCcc
Confidence 3455 233346788999999999999999998 8877777766655
No 182
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=69.13 E-value=22 Score=27.84 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
+.|.-.+......|-.+++..-+.......+...|+++..++++ +++.+|++.|++++.+
T Consensus 106 ~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~ 167 (401)
T TIGR01264 106 HAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE 167 (401)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence 34444444444455556666667777888899999999998875 3578999999987753
No 183
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=69.09 E-value=41 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=33.3
Q ss_pred ccCce-eEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 32 LGGVT-IRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 32 ~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
+-|+- ....|.++++.+|.+.|++.++.....|..-+++.++.|
T Consensus 8 ~~Gv~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstG 52 (303)
T PRK03620 8 GSGLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTG 52 (303)
T ss_pred cCceEEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCc
Confidence 34552 333477889999999999999999888877776666654
No 184
>PRK06108 aspartate aminotransferase; Provisional
Probab=69.02 E-value=41 Score=25.93 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=34.2
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC---CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~---~~~m~~~~L~~~i~ 58 (119)
+++.+-.|......+...|++++.+|.+. ++.++.+.|++.+.
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 156 (382)
T PRK06108 111 VVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT 156 (382)
T ss_pred EEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC
Confidence 55567778888888888999999999863 46799999988764
No 185
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=69.02 E-value=33 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=30.5
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|-++++.+|.+.|++.++...+.|..-+++..+.|
T Consensus 14 vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstG 50 (296)
T TIGR03249 14 VTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTG 50 (296)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 3477889999999999999999998877777666654
No 186
>PLN02409 serine--glyoxylate aminotransaminase
Probab=68.81 E-value=26 Score=27.75 Aligned_cols=60 Identities=13% Similarity=0.040 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchH--HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst--~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..++.++......|-.+++....+.+. ...+...|++++.++.+..+.++.+.|++++.+
T Consensus 71 ~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~ 132 (401)
T PLN02409 71 GAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQ 132 (401)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhh
Confidence 455566655555665566666555544 245667799999999987677999999999975
No 187
>PRK07337 aminotransferase; Validated
Probab=68.61 E-value=23 Score=27.56 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
+|.-.+......|-.+++..-+++.....+...|.+++.++.++ ++.++.+.|++.+.
T Consensus 102 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (388)
T PRK07337 102 ALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG 161 (388)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC
Confidence 34444444445566677777788888888888899999999864 47899999998875
No 188
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=68.46 E-value=9.8 Score=30.07 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=36.8
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~ 58 (119)
.|+++..+|.+...++...|..++.+++|++ +.++++.|++++.
T Consensus 73 ~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~ 117 (376)
T TIGR02379 73 EVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAIT 117 (376)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC
Confidence 4667888899988888889999999999865 7899999988764
No 189
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=68.39 E-value=11 Score=29.03 Aligned_cols=39 Identities=13% Similarity=0.090 Sum_probs=30.6
Q ss_pred CccccH--HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 21 QAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 21 ~~H~S~--~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
..+|+. .+.+...|+.+..+|.+..+..+++++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~ 128 (368)
T PRK13479 88 NGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAA 128 (368)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHh
Confidence 444443 467778899999999987788999999988764
No 190
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=68.38 E-value=33 Score=26.24 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=30.5
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|-+++|++|.+.+++.++.....|..-+++.++.|
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstG 45 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSG 45 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc
Confidence 3477889999999999999999988877766666655
No 191
>PRK06348 aspartate aminotransferase; Provisional
Probab=66.97 E-value=24 Score=27.54 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
+|.-.+......|-.+++..-+++.....+...|.++..++.+ +++.+|.++|++.++.
T Consensus 101 al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (384)
T PRK06348 101 GMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS 161 (384)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence 3444444444555556666777778888899999999999873 4567999999998753
No 192
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=66.84 E-value=29 Score=26.22 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=30.6
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|-+++|++|.+.+++.++...+.|...+++.++.|
T Consensus 7 ~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG 43 (285)
T TIGR00674 7 ITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTG 43 (285)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc
Confidence 3467889999999999999999888887777766655
No 193
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=66.66 E-value=39 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=30.4
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|-++++.+|.+.+++.++...+.|..-+++.++.|
T Consensus 6 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstG 42 (281)
T cd00408 6 VTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTG 42 (281)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3467889999999999999999888877777766655
No 194
>PRK08361 aspartate aminotransferase; Provisional
Probab=66.53 E-value=11 Score=29.50 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=36.0
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~ 59 (119)
.+++.+-.|.+....+...|.+++.+|+++ ++.++++.|++.+..
T Consensus 119 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 165 (391)
T PRK08361 119 EVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK 165 (391)
T ss_pred EEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 355667788888888888999999999875 468999999887653
No 195
>PTZ00376 aspartate aminotransferase; Provisional
Probab=66.36 E-value=27 Score=27.57 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=41.9
Q ss_pred HHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHHH
Q psy9815 60 DLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEED 111 (119)
Q Consensus 60 ~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~~ 111 (119)
....|-.+++-.-+.......+...|.+++.++.+ +++.+|.+.|++++++.
T Consensus 120 ~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~ 173 (404)
T PTZ00376 120 FLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA 173 (404)
T ss_pred hcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC
Confidence 33456667777777788889999999999999983 45899999999999753
No 196
>PLN02417 dihydrodipicolinate synthase
Probab=65.63 E-value=39 Score=25.61 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=30.9
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|.++++.+|.+.+++.++...+.|..-+++.++.|
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstG 46 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTG 46 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCc
Confidence 3477889999999999999999988877777766666
No 197
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=65.53 E-value=27 Score=27.60 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=36.7
Q ss_pred hCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++....|.++. ..+...|++++.+++++++.++++.|+++|..
T Consensus 120 ~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 120 KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 34555666666777653 34567799999999988888999999998854
No 198
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=65.50 E-value=44 Score=25.41 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=29.6
Q ss_pred eecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 40 LPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 40 v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
.|-++++++|.+.+++.++...+.|..-+++.++.|
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstG 45 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTG 45 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCc
Confidence 367888999999999999999988877776666544
No 199
>PRK06225 aspartate aminotransferase; Provisional
Probab=65.32 E-value=23 Score=27.46 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC---CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~---~~~m~~~~L~~~i~~ 110 (119)
+++...+......|-.+++..-++......+...|.+++.+++++ ++.+|++.|++.+..
T Consensus 94 ~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~ 156 (380)
T PRK06225 94 ESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE 156 (380)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCC
Confidence 444444444444454455556666777777888999999998742 468999999988753
No 200
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=65.31 E-value=28 Score=28.31 Aligned_cols=89 Identities=20% Similarity=0.170 Sum_probs=53.1
Q ss_pred eeecCCccccHHHH-HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC
Q psy9815 16 GYCSDQAHSSVERA-GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD 94 (119)
Q Consensus 16 v~~s~~~H~S~~ka-~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d 94 (119)
.|..+...+.++++ +...|.... +++.. ++ .++.-++....+.|-.+ ......-++.....+.|...+-++++
T Consensus 48 ~Y~~~~g~~~Leeaia~~~g~~~v-v~t~~-Gt---~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~ 121 (431)
T cd00617 48 AYAGSKSFYDLEDAVQDLFGFKHI-IPTHQ-GR---GAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVID 121 (431)
T ss_pred ccCCCCCHHHHHHHHHHHHCCCeE-EEcCC-HH---HHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecc
Confidence 36666666666655 456777432 33332 22 33443444444555433 23333345666778889999989886
Q ss_pred C----------CCCcCHHHHHHHHHH
Q psy9815 95 D----------SYKLRGDALEAAIEE 110 (119)
Q Consensus 95 ~----------~~~m~~~~L~~~i~~ 110 (119)
+ +|.||++.|+++|.+
T Consensus 122 ~~~~~~~~~pf~gniD~e~Le~~I~~ 147 (431)
T cd00617 122 EAHDAQELIPFKGNIDVAKLEKLIDE 147 (431)
T ss_pred cccccccccCCCCCcCHHHHHHHhCc
Confidence 3 245999999999974
No 201
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=65.20 E-value=18 Score=28.36 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=38.9
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeec-C-CCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~-d-~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++..-+.......+...|++++.+++ + +++.+|.++|++++++
T Consensus 118 ~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~ 168 (396)
T PRK09257 118 FPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQ 168 (396)
T ss_pred CCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHh
Confidence 35555666667777788888999999999997 3 4579999999998875
No 202
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=65.20 E-value=12 Score=29.48 Aligned_cols=44 Identities=23% Similarity=0.113 Sum_probs=36.3
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
.|++++..|.+...++...|..++.++.|. .+.+|++.|++++.
T Consensus 75 ~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~ 119 (379)
T PRK11658 75 EVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAIT 119 (379)
T ss_pred EEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcc
Confidence 466778889988888888999999998875 46789999988774
No 203
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=65.08 E-value=18 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=33.8
Q ss_pred eeeecCCccccHH----HHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVE----RAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~----ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
.+++++..|+|.. +.+...|+.++.++.+. ++.++.+.|++.+.
T Consensus 106 ~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~ 154 (397)
T TIGR01976 106 EVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLS 154 (397)
T ss_pred EEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcC
Confidence 4666777787754 45667899999998875 68899999988874
No 204
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=64.71 E-value=27 Score=28.30 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=36.7
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecC-CCcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d-~~~~m~~~~L~~~i~ 58 (119)
.|+++..+|.+...+....|...+.++++ +++.+|++.|++++.
T Consensus 113 ~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~ 157 (438)
T PRK15407 113 EVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVS 157 (438)
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcC
Confidence 46678899999988888899988888887 478899999988774
No 205
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=64.70 E-value=44 Score=27.33 Aligned_cols=88 Identities=24% Similarity=0.241 Sum_probs=50.8
Q ss_pred eeecCCccccHHHH-HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc-hHHHHHHhcCceeEEeec
Q psy9815 16 GYCSDQAHSSVERA-GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS-SVERAGLLGGVTIRGLPA 93 (119)
Q Consensus 16 v~~s~~~H~S~~ka-~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g-st~~~a~~~g~~~~~v~~ 93 (119)
.|+.......+.++ +...|.... +++.. ++ .++.-++....+.|- .++...|. ++.....+.|.+++.+++
T Consensus 73 ~Y~~~~g~~~Lreaia~~~~~~~v-v~t~g-gt---~A~~~~~~all~pGD--Vii~~p~~~~~~~~i~~~G~~~v~v~~ 145 (460)
T PRK13238 73 AYAGSRSYYRLEDAVKDIFGYPYT-IPTHQ-GR---AAEQILFPVLIKKGD--VVPSNYHFDTTRAHIELNGATAVDLVI 145 (460)
T ss_pred ccCCCCCHHHHHHHHHHHhCCCcE-EECCC-HH---HHHHHHHHHhCCCCC--EEccCCcccchHHHHHHcCCEEEEEec
Confidence 45555555555544 456665432 33331 11 233333444455565 33445554 445557788999999988
Q ss_pred CC--------C--CCcCHHHHHHHHHH
Q psy9815 94 DD--------S--YKLRGDALEAAIEE 110 (119)
Q Consensus 94 d~--------~--~~m~~~~L~~~i~~ 110 (119)
++ . |.+|.+.|++.|.+
T Consensus 146 ~~~~~~~~~~~f~g~id~e~Le~~i~~ 172 (460)
T PRK13238 146 DEALDTGSRHPFKGNFDLEKLEALIEE 172 (460)
T ss_pred cccccccccccccCCcCHHHHHHHHhh
Confidence 63 3 44999999999974
No 206
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=64.64 E-value=15 Score=29.70 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=28.6
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+-+++..+..|.|+-.++++.+...+..+- -|.+.|++.+++
T Consensus 123 ~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~~l~~ 164 (388)
T COG0156 123 GDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEALLEE 164 (388)
T ss_pred CcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHHHHHh
Confidence 467888899999999999988865544432 233555555544
No 207
>PRK07681 aspartate aminotransferase; Provisional
Probab=64.22 E-value=30 Score=27.12 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~ 109 (119)
+|.-.+......|-.+++..-++......+...|++++.++.+++ +.+|.++|++++.
T Consensus 105 al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 164 (399)
T PRK07681 105 GLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA 164 (399)
T ss_pred HHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 343444333445655666667777888888999999999998754 5679999988874
No 208
>PRK07550 hypothetical protein; Provisional
Probab=64.01 E-value=33 Score=26.69 Aligned_cols=59 Identities=20% Similarity=-0.014 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
+|.-.+......|-.+++..-+++.....+...|++++.|+.++ .+.++.+.|++++++
T Consensus 102 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~ 162 (386)
T PRK07550 102 AFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP 162 (386)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc
Confidence 34444444444565666666666777778889999999999974 466899999998864
No 209
>PLN02187 rooty/superroot1
Probab=63.96 E-value=32 Score=27.97 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~ 109 (119)
++|.-.+......|-.+++..-++......+...|++++.++.. +++.+|.++|++++.
T Consensus 142 ~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 142 QGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 34444444444556566666777777778889999999999873 568999999998774
No 210
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=63.81 E-value=32 Score=26.00 Aligned_cols=55 Identities=9% Similarity=-0.057 Sum_probs=39.3
Q ss_pred CCccEEeecCc--chHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAH--SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~--gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
|-.++..-.+. .++...+...|+....|+. +.+.++.+.|...+......|..||
T Consensus 17 g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~i~a~~~~g~~~l 73 (256)
T PRK10558 17 KQVQIGCWSALANPITTEVLGLAGFDWLVLDG-EHAPNDVSTFIPQLMALKGSASAPV 73 (256)
T ss_pred CCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc-ccCCCCHHHHHHHHHHHhhcCCCcE
Confidence 43344443333 3444555667788888888 5579999999999999999888775
No 211
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=63.73 E-value=21 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=33.7
Q ss_pred eeeecCCccccH----HHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~----~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|.|. ...+...|+.++.+|.+..+.++++.|++.+..
T Consensus 124 ~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~ 172 (424)
T PLN02855 124 EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSE 172 (424)
T ss_pred EEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence 466677767654 344567789999999887778999999888743
No 212
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=63.71 E-value=13 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=34.5
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 57 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i 57 (119)
.++.++-++......++..|..+..+|.++++.+|.+.|++++
T Consensus 101 ~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~ 143 (351)
T PRK01688 101 AILYCPPTYGMYSVSAETIGVEIRTVPTLDNWQLDLPAIADNL 143 (351)
T ss_pred EEEEcCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHHhc
Confidence 3555666676777788899999999999888899999988765
No 213
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=63.64 E-value=16 Score=27.56 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=34.9
Q ss_pred cccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH-hcCc
Q psy9815 46 YKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL-LGGV 86 (119)
Q Consensus 46 ~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~-~~g~ 86 (119)
-.|+.+.|++.|.+..+.|+.+.++++-.|+.+.+++ -+|+
T Consensus 191 t~m~~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi 232 (236)
T PF12017_consen 191 TSMDADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGI 232 (236)
T ss_pred CcCCHHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCC
Confidence 4899999999999999999999999999999997654 3443
No 214
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=63.49 E-value=31 Score=28.34 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
.|.-.+......|-.+++..-++......+.+.|.+++.+++++ ++.+|+++|++++.
T Consensus 220 al~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 279 (517)
T PRK13355 220 LINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT 279 (517)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC
Confidence 34344444445565667777777788888899999999998864 47899999998874
No 215
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=63.44 E-value=70 Score=24.99 Aligned_cols=43 Identities=26% Similarity=0.221 Sum_probs=31.5
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
+++.+-.......++...|.++..||+++ ++.++++.|++.+.
T Consensus 120 vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~ 164 (396)
T PRK09147 120 VVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW 164 (396)
T ss_pred EEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh
Confidence 34444455556677888999999999874 36899999987764
No 216
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=63.39 E-value=27 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=34.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~ 59 (119)
|+..+-+......++...|..+..++.++ ++.++++.|++++.+
T Consensus 119 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 163 (374)
T PRK02610 119 ILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ 163 (374)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence 44555555566677888999999998876 589999999988764
No 217
>PLN02397 aspartate transaminase
Probab=62.95 E-value=64 Score=25.76 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=32.3
Q ss_pred eeecCCccccHHHHHhccCceeEEeec-C-CCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~-d-~~~~m~~~~L~~~i~~ 59 (119)
|+..+-.+......+...|.+++.+|. + +++.+|++.+++.+.+
T Consensus 145 Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~ 190 (423)
T PLN02397 145 IYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKA 190 (423)
T ss_pred EEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHh
Confidence 445555566666667788999999987 3 3588999999887754
No 218
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=62.94 E-value=28 Score=25.19 Aligned_cols=68 Identities=25% Similarity=0.204 Sum_probs=49.0
Q ss_pred CcccCHHHHHHHHHHHHhCCCccEEe-ecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHh
Q psy9815 45 SYKLRGDALEAAIEEDLKKGKIPFYV-NQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 45 ~~~m~~~~L~~~i~~~~~~g~~p~~v-~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~ 113 (119)
.|..++++.+++.-..+-.|..|+++ -..+-+..+-+.-+|+.++.+=. +-.-+..++|-++++++..
T Consensus 54 AG~vdi~avRQAYvnaki~G~rPmvvaR~ade~Ar~LA~~LGVEvv~lLp-D~v~lS~dDLy~a~~~al~ 122 (209)
T COG4998 54 AGMVDINAVRQAYVNAKISGMRPMVVARGADEAARKLAEKLGVEVVILLP-DVVVLSTDDLYEAVEEALD 122 (209)
T ss_pred ccccchHHHHHHHHHHHhhcCCceeeecccCHHHHHHHHHhCcchhhhcc-ceeEeeHHHHHHHHHHHHH
Confidence 38899999999999988899999877 45667778888889987752222 2344556666666665543
No 219
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.88 E-value=14 Score=29.71 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=71.0
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHH-----------------------HHhCCCccEEe
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE-----------------------DLKKGKIPFYV 70 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~-----------------------~~~~g~~p~~v 70 (119)
-|+++.++..+...+.-..|.+.+-|.+|. .+-||++.|+++|.. ..+.|+ +++-
T Consensus 76 eVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~l-~vIE 154 (374)
T COG0399 76 EVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHGL-PVIE 154 (374)
T ss_pred EEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehhccCCCCHHHHHHHHHHcCC-eEEE
Confidence 467888999988888888999999999995 599999999999864 122332 3343
Q ss_pred --ecCcchHHHHHHhcCce-e--E------EeecCCCCCc---CHHHHHHHHHHHHhCCCCC
Q psy9815 71 --NQAHSSVERAGLLGGVT-I--R------GLPADDSYKL---RGDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 71 --~~t~gst~~~a~~~g~~-~--~------~v~~d~~~~m---~~~~L~~~i~~~~~~G~~p 118 (119)
.+++|++-+|-.+..+. + . .+.|. +|-| +-+.|.+.++..+..|..+
T Consensus 155 DaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~ 215 (374)
T COG0399 155 DAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSR 215 (374)
T ss_pred EcchhccCeecCcccccccceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCC
Confidence 34568888877666551 1 1 12233 2322 3388999999988888754
No 220
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=62.84 E-value=16 Score=27.94 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=32.6
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
++.++-.+......+...|.+++.+|.++++.++++.|++.+.
T Consensus 114 vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 156 (361)
T PRK00950 114 VIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT 156 (361)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc
Confidence 4445555555556677889999999988888999999988774
No 221
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=62.78 E-value=37 Score=26.05 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=37.3
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
.+++..-++......+...|.+++.++.++ .+.+|+++|++++.+
T Consensus 89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 135 (350)
T TIGR03537 89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE 135 (350)
T ss_pred eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh
Confidence 566667778899999999999999999863 356899999998865
No 222
>PRK06290 aspartate aminotransferase; Provisional
Probab=62.70 E-value=35 Score=27.20 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
.|...+......|-.+++..-++......+...|.++..++.++ ++.+|.+.|++++..
T Consensus 118 al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~ 178 (410)
T PRK06290 118 ALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE 178 (410)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc
Confidence 34444444445565555666666677788888999999999975 467799999888753
No 223
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=62.25 E-value=16 Score=28.11 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=32.5
Q ss_pred eecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 17 YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 17 ~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+.++-.......++...|.+++.++.++++.++++.|++++..
T Consensus 104 lv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~ 146 (351)
T PRK14807 104 IYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK 146 (351)
T ss_pred EEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc
Confidence 3444444455566788999999999988889999999888753
No 224
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=62.07 E-value=41 Score=26.47 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
+++.-.+......|-.+++..-+++.....+...|++++.++.+ +++.+|.+.+++++..
T Consensus 107 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 168 (403)
T TIGR01265 107 QAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE 168 (403)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc
Confidence 34444444433456556666677777788888999999988874 4578999999988753
No 225
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=61.62 E-value=33 Score=27.20 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
.|.-.+......|-.+++..-+.......+...|.+++.++++ +++.+|.++|+++++.
T Consensus 109 al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 169 (409)
T PLN00143 109 AAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE 169 (409)
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc
Confidence 3444444444556556666777778888899999999999874 4567999999887753
No 226
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=61.48 E-value=6.7 Score=24.07 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|.++|.+.+..|+.||
T Consensus 50 r~l~~aIKrAR~~~LlP~ 67 (70)
T TIGR00165 50 RRLARAIKRARYLALLPY 67 (70)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 678999999999999998
No 227
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=61.33 E-value=39 Score=25.94 Aligned_cols=47 Identities=23% Similarity=0.238 Sum_probs=35.2
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..-++......+...|.+++.++. +++.+|.+.|++++.
T Consensus 106 ~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~ 152 (367)
T PRK02731 106 GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYGHDLDAMLAAVT 152 (367)
T ss_pred CCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCCCCHHHHHHHhC
Confidence 34555555566666666667888999999998 457899999998885
No 228
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=61.21 E-value=34 Score=27.47 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeec--CCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~--d~~~~m~~~~L~~~i~~ 110 (119)
+|.-.+......|-.+++..-++......+.+.|++++.++. ++++.+|.++|++.+..
T Consensus 129 al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 189 (430)
T PLN00145 129 AIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE 189 (430)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc
Confidence 344444443345555666666777777888899999998876 44688999999887643
No 229
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=61.08 E-value=43 Score=25.15 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=30.6
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
..|-++++.+|.+.+++.++...+.|...+++.++.|
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstG 45 (284)
T cd00950 9 VTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTG 45 (284)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 3467889999999999999999999987777765554
No 230
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=60.99 E-value=39 Score=25.94 Aligned_cols=46 Identities=13% Similarity=0.299 Sum_probs=36.6
Q ss_pred CCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 108 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i 108 (119)
.|-.+.+..-+++.....+...|++++.|+.++++.+|.+.|++++
T Consensus 93 ~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~ 138 (337)
T PRK03967 93 EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA 138 (337)
T ss_pred CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc
Confidence 3545666666666677778899999999999888899999998764
No 231
>PRK06836 aspartate aminotransferase; Provisional
Probab=60.98 E-value=19 Score=28.26 Aligned_cols=43 Identities=23% Similarity=0.087 Sum_probs=33.6
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCC-cccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-~~m~~~~L~~~i~ 58 (119)
+++++-.+......+...|+.++.+|++++ +.++.+.|++.+.
T Consensus 123 Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~ 166 (394)
T PRK06836 123 VIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT 166 (394)
T ss_pred EEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcC
Confidence 455666666677777788999999998775 7899999988764
No 232
>PRK07337 aminotransferase; Validated
Probab=60.94 E-value=56 Score=25.41 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=32.6
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|+.++-.|.+....+...|..++.+|.+. ++.++++.|++.+.
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (388)
T PRK07337 117 VLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG 161 (388)
T ss_pred EEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC
Confidence 45556667777777777888888898864 57899998887764
No 233
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=60.32 E-value=41 Score=25.91 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=33.7
Q ss_pred hCC-CccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHH
Q psy9815 62 KKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALE 105 (119)
Q Consensus 62 ~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~ 105 (119)
..| -.+++..-++......+...|++++.|++++++.++.+.++
T Consensus 99 ~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~ 143 (354)
T PRK04635 99 EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIE 143 (354)
T ss_pred CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHH
Confidence 344 44555556666666778899999999999888899998886
No 234
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=60.32 E-value=73 Score=24.68 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=32.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
+++.+-.+.....++...|.+++.+|.++ .+.++++.|++.+.
T Consensus 118 vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~ 162 (383)
T TIGR03540 118 VLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA 162 (383)
T ss_pred EEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc
Confidence 45555566666677788999999999864 36689999888764
No 235
>PRK09265 aminotransferase AlaT; Validated
Probab=60.31 E-value=56 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.002 Sum_probs=33.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|++++-.|.....++...|.++..+++|. .+.++.+.|++.+.
T Consensus 122 Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 166 (404)
T PRK09265 122 VLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT 166 (404)
T ss_pred EEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc
Confidence 55677788888888888888888887763 46789998887763
No 236
>PRK07324 transaminase; Validated
Probab=59.87 E-value=36 Score=26.57 Aligned_cols=58 Identities=10% Similarity=-0.024 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~ 109 (119)
++.-.+......|-.+++..-++.+....+...|.+++.++++++ +.+|.++|++.+.
T Consensus 92 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 151 (373)
T PRK07324 92 ANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVR 151 (373)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCC
Confidence 444444444455666666777777888888999999999998643 5689999988764
No 237
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=59.05 E-value=49 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=28.9
Q ss_pred ecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 41 PADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 41 ~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
|-++++.+|.+++++.++...+.|..-+++..+.|
T Consensus 15 PF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttG 49 (299)
T COG0329 15 PFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTG 49 (299)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 56667999999999999999999977666766665
No 238
>PRK08637 hypothetical protein; Provisional
Probab=58.95 E-value=49 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=34.0
Q ss_pred hCCCccEEeecCcchHHHHH-HhcCceeEEeecC-CCCCcCHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAG-LLGGVTIRGLPAD-DSYKLRGDALEAAIE 109 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a-~~~g~~~~~v~~d-~~~~m~~~~L~~~i~ 109 (119)
..|-.+++..=+++...... ...|.+++.++.+ +++.+|.++|+++++
T Consensus 91 ~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~ 140 (388)
T PRK08637 91 DQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQ 140 (388)
T ss_pred CCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHH
Confidence 44544444445555666654 4689999999983 566899999999887
No 239
>KOG0634|consensus
Probab=58.68 E-value=32 Score=28.48 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 50 GDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 50 ~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+.|...+.-..+.|-.+++=.-+..+.-...+-+|++++.|+.|.+ .|+++.|++.+..
T Consensus 134 t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ipv~md~~-Gi~pE~l~~il~~ 193 (472)
T KOG0634|consen 134 TDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIPVKMDQD-GIDPESLEEILSN 193 (472)
T ss_pred chHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEeccccCC-CCCHHHHHHHHhc
Confidence 36788888888888888888889999999999999999999999776 5999999998864
No 240
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=58.40 E-value=54 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=29.1
Q ss_pred eecCCCcccCHHHHHHHHHHHHhCC-CccEEeecCcc
Q psy9815 40 LPADDSYKLRGDALEAAIEEDLKKG-KIPFYVNQAHS 75 (119)
Q Consensus 40 v~~d~~~~m~~~~L~~~i~~~~~~g-~~p~~v~~t~g 75 (119)
.|-++++++|.+.+++.++.....| ..-+++..+.|
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstG 46 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTG 46 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCccc
Confidence 3678889999999999999988888 66666665554
No 241
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=58.37 E-value=18 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=33.2
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+++.+-.+......+...|+.++.+|.++++.++.++|++.+..
T Consensus 115 vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~ 158 (371)
T PRK05166 115 VVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDLDALCAAVAR 158 (371)
T ss_pred EEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc
Confidence 34445555556667788899999999988889999998887743
No 242
>PRK06207 aspartate aminotransferase; Provisional
Probab=57.66 E-value=93 Score=24.56 Aligned_cols=44 Identities=14% Similarity=-0.057 Sum_probs=32.5
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC-----CCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD-----DSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d-----~~~~m~~~~L~~~i~~ 59 (119)
|+..+-.+......+...|.+++.|+.+ .++.++++.|++++.+
T Consensus 129 Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~ 177 (405)
T PRK06207 129 VAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA 177 (405)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh
Confidence 3444556666667788889998888876 2588999999888754
No 243
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=57.50 E-value=47 Score=25.75 Aligned_cols=59 Identities=8% Similarity=0.119 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
+.+.-.+......|-.+++..-+.+.....+...|.+++.++.++ .+.+|.+.+++++.
T Consensus 104 ~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 104 EGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 334444444444565566667777778888889999999999864 36688999887764
No 244
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=57.44 E-value=9.4 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|.++|++.+..|+.||
T Consensus 59 r~l~~aIkrAR~~~LlPf 76 (79)
T PRK00391 59 RQLATAIKRARFLALLPY 76 (79)
T ss_pred HHHHHHHHHHHHhhCCCc
Confidence 678999999999999998
No 245
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=57.30 E-value=20 Score=27.17 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=8.2
Q ss_pred CcCHHHHHHHHHHHHh
Q psy9815 98 KLRGDALEAAIEEDLK 113 (119)
Q Consensus 98 ~m~~~~L~~~i~~~~~ 113 (119)
..+.+.+.+.+++...
T Consensus 109 ~~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 109 KPTQEGLYQHFKAIAE 124 (292)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4455555555554443
No 246
>PLN02672 methionine S-methyltransferase
Probab=57.18 E-value=41 Score=30.90 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~~ 110 (119)
+.+...+......|-.+++..-+.+.....+...|.+++.|+++ +++.+|.+.|++++++
T Consensus 765 elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~ 826 (1082)
T PLN02672 765 ALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET 826 (1082)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence 33444444444556556666667888899999999999999996 3588999999999854
No 247
>PRK09265 aminotransferase AlaT; Validated
Probab=57.17 E-value=49 Score=25.98 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC--CCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~ 109 (119)
.+.-.+......|-.+++..-+++.....+...|.++..+++|. ++.+|.+.|++++.
T Consensus 107 ~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 166 (404)
T PRK09265 107 LIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKIT 166 (404)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHhcc
Confidence 34444444444565677777888888888888999888888763 47799999998874
No 248
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=57.13 E-value=39 Score=26.26 Aligned_cols=48 Identities=19% Similarity=0.036 Sum_probs=35.3
Q ss_pred HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
...|-.+++..-++.+....+...|.+++.++.+++ .++.++|.+++.
T Consensus 105 ~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~ 152 (369)
T PRK08153 105 VEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAAR 152 (369)
T ss_pred cCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhc
Confidence 345555555556677777788889999999998766 488888877664
No 249
>PRK10534 L-threonine aldolase; Provisional
Probab=57.06 E-value=44 Score=25.29 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=27.3
Q ss_pred eecCCccccHHHH--Hhcc-CceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 17 YCSDQAHSSVERA--GLLG-GVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 17 ~~s~~~H~S~~ka--~~~~-G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+++...|.+...+ +... +...+.++.++++.+|++.|++++..
T Consensus 77 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~ 122 (333)
T PRK10534 77 IVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKP 122 (333)
T ss_pred EEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcc
Confidence 3445555432322 2333 46777787777899999999888743
No 250
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=57.01 E-value=71 Score=23.01 Aligned_cols=103 Identities=20% Similarity=0.118 Sum_probs=50.8
Q ss_pred cCeeeeecCCcc---------ccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHH
Q psy9815 12 ANLVGYCSDQAH---------SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGL 82 (119)
Q Consensus 12 ~~lvv~~s~~~H---------~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~ 82 (119)
+++++|.|+-+| ....-+++-+|..++.+-...+++|+++.. +.|.+. ...+..+-+.-+...-....+
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~aR~l~~~~iNLGfsG~~~le~~~a-~~ia~~-~a~~~~ld~~~N~~~~~~~~~ 79 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAILARRLGLDVINLGFSGNGKLEPEVA-DLIAEI-DADLIVLDCGPNMSPEEFRER 79 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHHHHHHT-EEEEEE-TCCCS--HHHH-HHHHHS---SEEEEEESHHCCTTTHHHH
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHHHHHcCCCeEeeeecCccccCHHHH-HHHhcC-CCCEEEEEeecCCCHHHHHHH
Confidence 467889888888 334455667888888888888899988743 344433 223333333334333334444
Q ss_pred hcCc-----------eeEEeec--CCCCCcC------H----HHHHHHHHHHHhCCC
Q psy9815 83 LGGV-----------TIRGLPA--DDSYKLR------G----DALEAAIEEDLKKGK 116 (119)
Q Consensus 83 ~~g~-----------~~~~v~~--d~~~~m~------~----~~L~~~i~~~~~~G~ 116 (119)
+.++ -+..|.. -.+..++ . +++++++++.+++|.
T Consensus 80 ~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~ 136 (178)
T PF14606_consen 80 LDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGD 136 (178)
T ss_dssp HHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4443 2333331 1112222 2 667777777777663
No 251
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=55.73 E-value=47 Score=26.55 Aligned_cols=60 Identities=30% Similarity=0.254 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC---CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d---~~~~m~~~~L~~~i~~ 110 (119)
++|--++....+.|-.+++..=...+......+.|.++..++++ +++.+|.+.|++++..
T Consensus 100 ~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ 162 (393)
T COG0436 100 EALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP 162 (393)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc
Confidence 34444555555666556666666777788888999999999975 4899999999999976
No 252
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=55.59 E-value=32 Score=26.15 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=30.6
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 57 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i 57 (119)
+++++-.+......+...|..++.+|.++++.++.+.|++.+
T Consensus 98 v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~ 139 (346)
T TIGR01141 98 VLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAI 139 (346)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhc
Confidence 334444443444566778999999999888889999998865
No 253
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=55.46 E-value=30 Score=26.97 Aligned_cols=60 Identities=20% Similarity=0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHH-----HHhcCceeEEeecCC---CCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERA-----GLLGGVTIRGLPADD---SYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~-----a~~~g~~~~~v~~d~---~~~m~~~~L~~~i~~ 110 (119)
.++...+......|-.+++..-++++.... +...|.++..++.+. ++.+|+++|++++.+
T Consensus 92 ~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~ 159 (402)
T cd00378 92 QANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE 159 (402)
T ss_pred HHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh
Confidence 455555555556666666666666544322 455677666666532 699999999999864
No 254
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=55.32 E-value=67 Score=25.08 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCc--cEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKI--PFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~--p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~ 110 (119)
++|.-.+......|-. +++-.-+.......+...|++++.|+++++ +.+|.+.|++++.+
T Consensus 101 ~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (393)
T TIGR03538 101 EALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR 164 (393)
T ss_pred HHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence 3444444444444532 333334556667778899999999998643 67899999988754
No 255
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=54.89 E-value=25 Score=27.98 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=33.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
++..+-++.....++...|.++..||+|+.+ ++.+.|++++..
T Consensus 168 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~ 210 (431)
T PRK15481 168 VAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQ 210 (431)
T ss_pred EEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc
Confidence 4445566667777888899999999997765 899999888753
No 256
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=54.89 E-value=29 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred CeeeeecCCccccHH----HHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~----ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.-.++.+..-|+|.. ..+.-.|++++.+|.+..+..+.+.+++++.
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~ 137 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN 137 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence 345667777788877 3334578999999998889999999999884
No 257
>KOG0630|consensus
Probab=54.73 E-value=25 Score=29.94 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=39.7
Q ss_pred ccEEeecCcch-HHHHHHhcCceeEEeec----C---CCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 66 IPFYVNQAHSS-VERAGLLGGVTIRGLPA----D---DSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 66 ~p~~v~~t~gs-t~~~a~~~g~~~~~v~~----d---~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
+.|++.++|-- ...+++-+|+....|.+ | -.|+||.--+++.|++|.+.|..|+
T Consensus 233 t~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPL 294 (838)
T KOG0630|consen 233 TFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPL 294 (838)
T ss_pred eEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCe
Confidence 34666666644 34789999994444432 2 2369999999999999999999884
No 258
>PRK07683 aminotransferase A; Validated
Probab=54.58 E-value=53 Score=25.68 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~~m~~~~L~~~i~ 109 (119)
.+|.-.+......|-.+++..-+.+.....+...|++++.++.++ ++.++.+.|++.+.
T Consensus 100 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 159 (387)
T PRK07683 100 EAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAIT 159 (387)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcC
Confidence 344444444344555556666666777788888999999999875 46678889988775
No 259
>PRK12414 putative aminotransferase; Provisional
Probab=54.25 E-value=24 Score=27.63 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=33.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
+++++-.|......+...|.+++.+|.++ ++.++++.|++++.
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 160 (384)
T PRK12414 117 VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT 160 (384)
T ss_pred EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC
Confidence 45566667777777788899998998874 57889999888764
No 260
>PRK08175 aminotransferase; Validated
Probab=53.54 E-value=66 Score=25.16 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|...+......|-.+++..-++......+...|.++..|++++++ ...++|++++++
T Consensus 103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~l~~~l~~ 160 (395)
T PRK08175 103 GLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGV-DFFNELERAIRE 160 (395)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCC-CcHHHHHHHHhh
Confidence 3334444444556566666777778888889999999999997653 358888888764
No 261
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=53.07 E-value=45 Score=26.23 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=32.0
Q ss_pred eeeecCCccccHHH----HHhccCcee----EEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVER----AGLLGGVTI----RGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~k----a~~~~G~~~----~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|.|... .+...|+.+ +.++.+..+.++++.+++.++.
T Consensus 115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 167 (406)
T TIGR01814 115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEK 167 (406)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHh
Confidence 57788888988543 344557765 5666666788899999888754
No 262
>PRK05764 aspartate aminotransferase; Provisional
Probab=52.92 E-value=33 Score=26.60 Aligned_cols=44 Identities=25% Similarity=0.173 Sum_probs=34.7
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
.+++++-.|.....++...|..++.+|.+. .+.++++.|++++.
T Consensus 117 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~ 162 (393)
T PRK05764 117 EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT 162 (393)
T ss_pred EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC
Confidence 356667778888888888999999998863 57888999888774
No 263
>KOG0256|consensus
Probab=52.72 E-value=32 Score=28.38 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.2
Q ss_pred cCceeEEeecCC--CcccCHHHHHHHHHHHHhCCCc
Q psy9815 33 GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKI 66 (119)
Q Consensus 33 ~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g~~ 66 (119)
.|+.++.|.+++ +++++.++||+++++.++.|..
T Consensus 191 Tgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~k 226 (471)
T KOG0256|consen 191 TGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLK 226 (471)
T ss_pred cCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCc
Confidence 677888887765 6999999999999998877644
No 264
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=52.69 E-value=94 Score=23.53 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=30.1
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhC-CCccEEeecCcc
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKK-GKIPFYVNQAHS 75 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~-g~~p~~v~~t~g 75 (119)
..|-++++.+|.+.+++.++...+. |..-+++..+.|
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstG 46 (288)
T cd00954 9 LTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTG 46 (288)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCc
Confidence 3467889999999999999999888 877777766654
No 265
>PLN02483 serine palmitoyltransferase
Probab=52.30 E-value=43 Score=27.53 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=37.2
Q ss_pred HHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHH
Q psy9815 60 DLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 112 (119)
Q Consensus 60 ~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~ 112 (119)
....|-.+++-.-+|.+...++.+.|++++.++.+ |.+.|++.+++..
T Consensus 181 l~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i 228 (489)
T PLN02483 181 LIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLREQI 228 (489)
T ss_pred hCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhh
Confidence 33456566777889999999999999999999865 4688888887644
No 266
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=51.74 E-value=39 Score=26.47 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=34.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~~ 59 (119)
+++.+-.+.....++...|.++..+|+++ .+.++++.|++++.+
T Consensus 118 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~ 162 (391)
T PRK07309 118 VLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILE 162 (391)
T ss_pred EEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhc
Confidence 44455667777778888999999998876 468999999988764
No 267
>PF14695 LINES_C: Lines C-terminus
Probab=51.42 E-value=19 Score=19.62 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|+.+|++...+++.||
T Consensus 7 ~~L~~aI~rL~~k~LFPY 24 (39)
T PF14695_consen 7 IRLRLAIERLVRKNLFPY 24 (39)
T ss_pred HHHHHHHHHHHHCCCCCC
Confidence 568999999999999997
No 268
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=51.37 E-value=22 Score=29.35 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=53.2
Q ss_pred eecCCccccHHHH-HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHH-HHhcCceeEEeecC
Q psy9815 17 YCSDQAHSSVERA-GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERA-GLLGGVTIRGLPAD 94 (119)
Q Consensus 17 ~~s~~~H~S~~ka-~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~-a~~~g~~~~~v~~d 94 (119)
|..+-+.+-++++ +.++|..- .|++. +|++-...| ..-....|-.+ ..-++.+|..+ ....|..++-+++|
T Consensus 67 yag~~s~~~lE~~va~~~G~~~-av~v~-sGT~Al~ll---~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~d 139 (450)
T TIGR02618 67 YAGSRNFYHLERTVRELYGFKY-VVPTH-QGRGAENLL---SQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIID 139 (450)
T ss_pred hcCCCcHHHHHHHHHHHHCCCe-EEEcC-CHHHHHHHH---HHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecc
Confidence 7777778888876 66888853 44443 233322222 22223344322 44566566555 57778766666543
Q ss_pred ----------CCCCcCHHHHHHHHHH
Q psy9815 95 ----------DSYKLRGDALEAAIEE 110 (119)
Q Consensus 95 ----------~~~~m~~~~L~~~i~~ 110 (119)
.+|.||+++|+++|..
T Consensus 140 ea~~~~~~~p~~GniD~~~Le~aI~~ 165 (450)
T TIGR02618 140 EAHDAQLNIPFKGNVDLKKLQKLIDE 165 (450)
T ss_pred cccccccCCCCCCCcCHHHHHHHhcc
Confidence 4689999999999974
No 269
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=51.32 E-value=77 Score=24.42 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=26.2
Q ss_pred CcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 45 SYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 45 ~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
+|.+|.+.|++.++.....|..-+++.++.|
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstG 53 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFG 53 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 4899999999999999999877777766665
No 270
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=51.18 E-value=53 Score=21.43 Aligned_cols=49 Identities=29% Similarity=0.161 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHH-HHHHhcCceeEEeecCCCCCc
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVE-RAGLLGGVTIRGLPADDSYKL 99 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~-~~a~~~g~~~~~v~~d~~~~m 99 (119)
.++.-.+......+...++....|++.. ..+...|.+++.++.++++..
T Consensus 28 ~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~ 77 (170)
T cd01494 28 GANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77 (170)
T ss_pred HHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCcc
Confidence 3344444443334555677777777777 778888889988888765443
No 271
>PRK13401 30S ribosomal protein S18; Provisional
Probab=51.11 E-value=13 Score=23.51 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|.++|.+.+..|+.||
T Consensus 58 R~l~~AIKrAR~laLlPf 75 (82)
T PRK13401 58 RQVATAIKNAREMALLPY 75 (82)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 678999999999999998
No 272
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=50.02 E-value=1.3e+02 Score=23.80 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=34.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~ 59 (119)
++.++-++......+...|..+..+|.++ ++.++++.|++.+..
T Consensus 131 vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~ 176 (412)
T PTZ00433 131 ILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD 176 (412)
T ss_pred EEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc
Confidence 45556667777788889999999998863 578999999877643
No 273
>KOG1368|consensus
Probab=49.69 E-value=12 Score=29.73 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=25.5
Q ss_pred HhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 82 LLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 82 ~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
.+.|+.++.|+..+++.|+.+++|++|.-.
T Consensus 117 ~l~gv~~~tv~~e~dgtm~ledIe~~ir~~ 146 (384)
T KOG1368|consen 117 QLAGVHVRTVKNENDGTMDLEDIEAAIRVP 146 (384)
T ss_pred hhccceeEeeeeCCCCeeeHHHHHHhhcCC
Confidence 455668999999999999999999999753
No 274
>PRK08912 hypothetical protein; Provisional
Probab=48.62 E-value=43 Score=26.08 Aligned_cols=44 Identities=16% Similarity=-0.017 Sum_probs=33.8
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
.|+..+-.|.....++...|..++.+|.+. ++.++.+.|++.+.
T Consensus 113 ~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (387)
T PRK08912 113 EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS 157 (387)
T ss_pred EEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC
Confidence 355566777788888888999888888864 57888888887653
No 275
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=48.51 E-value=76 Score=24.24 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=36.7
Q ss_pred HHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 60 DLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 60 ~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
....|-.+++....|+++..++.+.|.+++.++. .|.+.|++.++.
T Consensus 119 ~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~ 164 (385)
T PRK05958 119 LAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAK 164 (385)
T ss_pred hCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHh
Confidence 3455666777789999999999999999888875 378889888865
No 276
>PRK08636 aspartate aminotransferase; Provisional
Probab=48.36 E-value=1.3e+02 Score=23.56 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=33.3
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~ 60 (119)
.|++.+-++.....++...|.++..||.+ +++.++++.|.+.+++.
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 168 (403)
T PRK08636 121 VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKA 168 (403)
T ss_pred EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHH
Confidence 35555666666677788899999999874 45789998776666554
No 277
>PRK10534 L-threonine aldolase; Provisional
Probab=48.16 E-value=68 Score=24.22 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=47.8
Q ss_pred eeeeecCCccccHHHH-HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHH--HHHhcC-ceeE
Q psy9815 14 LVGYCSDQAHSSVERA-GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVER--AGLLGG-VTIR 89 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka-~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~--~a~~~g-~~~~ 89 (119)
...|.++..+..++++ +...|+.-..+ +.. +. +++.-.+......|-.+++...+|..... ++...| ..++
T Consensus 27 ~~~Y~~~~~~~~L~~~la~~~g~~~~~v-~~~-g~---~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~ 101 (333)
T PRK10534 27 DDVYGDDPTVNALQDYAAELSGKEAALF-LPT-GT---QANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQ 101 (333)
T ss_pred CcccCCCHHHHHHHHHHHHHhCCCeEEE-eCc-hH---HHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEE
Confidence 3446555555555554 55777732222 222 11 11111111223344444444444433222 234444 6777
Q ss_pred EeecCCCCCcCHHHHHHHHHH
Q psy9815 90 GLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 90 ~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.++.++++.+|.++|++++..
T Consensus 102 ~~~~~~~~~~d~~~l~~~i~~ 122 (333)
T PRK10534 102 PIDAAADGTLPLDKVAAKIKP 122 (333)
T ss_pred eecCCCCCCCCHHHHHHhhcc
Confidence 888888899999999998854
No 278
>PLN02656 tyrosine transaminase
Probab=48.15 E-value=1.4e+02 Score=23.63 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=32.7
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~ 58 (119)
|+.++-.|.....++...|+.++.+|++ +.+.++.+.|++.+.
T Consensus 123 Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 167 (409)
T PLN02656 123 ILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALAD 167 (409)
T ss_pred EEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhc
Confidence 5555667777777778889999999885 357899999987764
No 279
>PRK08363 alanine aminotransferase; Validated
Probab=48.04 E-value=69 Score=25.04 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEe-ecCC-CCCcCHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGL-PADD-SYKLRGDALEAAIE 109 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v-~~d~-~~~m~~~~L~~~i~ 109 (119)
+++...+......|-.+++..-++......+...|..+..+ +.++ .+.+|.+.|++++.
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 164 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKIT 164 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCC
Confidence 34444554444566666777778888888888899887777 5554 45799999988774
No 280
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=47.63 E-value=89 Score=25.19 Aligned_cols=49 Identities=33% Similarity=0.308 Sum_probs=35.9
Q ss_pred HhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
...|-.++++..-|.|.. ..+.-.|++++.+|++++|.++.+++++.+.
T Consensus 108 ~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~ 160 (405)
T COG0520 108 LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT 160 (405)
T ss_pred hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC
Confidence 355656667766665544 3444457789999999999999999998654
No 281
>PRK09105 putative aminotransferase; Provisional
Probab=47.56 E-value=30 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.061 Sum_probs=31.9
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA 56 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~ 56 (119)
++..+-.|.....++...|..++.+|.++++.++.+.|++.
T Consensus 122 Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~ 162 (370)
T PRK09105 122 LVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA 162 (370)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc
Confidence 44456667777778888999999999888888888888654
No 282
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=47.14 E-value=1.2e+02 Score=22.75 Aligned_cols=55 Identities=9% Similarity=-0.122 Sum_probs=39.0
Q ss_pred CCccEEeecCcchH--HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 64 GKIPFYVNQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 64 g~~p~~v~~t~gst--~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
|-.++..-.+.++. .......|+....|++ +.+.++.+.|...+......|..||
T Consensus 10 g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~-EHg~~~~~~~~~~~~a~~~~g~~~~ 66 (249)
T TIGR03239 10 RETLIGCWSALGNPITTEVLGLAGFDWLLLDG-EHAPNDVLTFIPQLMALKGSASAPV 66 (249)
T ss_pred CCceEEEEEcCCCcHHHHHHHhcCCCEEEEec-ccCCCCHHHHHHHHHHHhhcCCCcE
Confidence 33344444444443 3445557788888888 5579999999999999988898775
No 283
>PLN02397 aspartate transaminase
Probab=46.83 E-value=1.2e+02 Score=24.30 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=39.1
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeec-C-CCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~-d-~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++..-+.......+...|.+++.++. + +++.+|.+.+++.+++
T Consensus 140 ~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~ 190 (423)
T PLN02397 140 YPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKA 190 (423)
T ss_pred CCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHh
Confidence 35666777777778888888999999999987 3 3588999999988864
No 284
>PRK06348 aspartate aminotransferase; Provisional
Probab=46.04 E-value=1.4e+02 Score=23.20 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=32.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~ 58 (119)
+++.+-.+.....++...|..+..+|.+ +.+.++++.|++.+.
T Consensus 116 vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (384)
T PRK06348 116 VIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALIT 160 (384)
T ss_pred EEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhC
Confidence 4556667777777888889888888864 356799999988774
No 285
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=46.03 E-value=8.2 Score=15.23 Aligned_cols=6 Identities=67% Similarity=1.287 Sum_probs=4.3
Q ss_pred CCCCCC
Q psy9815 114 KGKIPF 119 (119)
Q Consensus 114 ~G~~pf 119 (119)
.|+|||
T Consensus 3 sGlI~f 8 (11)
T PF08259_consen 3 SGLIPF 8 (11)
T ss_pred cccccc
Confidence 477777
No 286
>CHL00077 rps18 ribosomal protein S18
Probab=45.84 E-value=18 Score=23.15 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|.++|++.+..|+.||
T Consensus 60 R~l~~aIKrAR~~gLlP~ 77 (86)
T CHL00077 60 RLITKAIKQARILSLLPF 77 (86)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 678999999999999997
No 287
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=45.75 E-value=1.6e+02 Score=23.89 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=29.8
Q ss_pred CCccccHHHHHh-ccCceeEEeecC--CCcccCHHHHHHHHHHHHh
Q psy9815 20 DQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLK 62 (119)
Q Consensus 20 ~~~H~S~~ka~~-~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~~~ 62 (119)
+-.......... ..|..++.||++ +.+.++.+.|++++++..+
T Consensus 142 ~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~ 187 (468)
T PLN02450 142 TPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQK 187 (468)
T ss_pred CCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHh
Confidence 333444445555 478899999985 4678888999998877543
No 288
>PLN00175 aminotransferase family protein; Provisional
Probab=45.36 E-value=43 Score=26.61 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=32.1
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC-CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~-~~~m~~~~L~~~i~ 58 (119)
|+..+-.+.....++...|.+++.++.++ ++.++++.|++.+.
T Consensus 142 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~ 185 (413)
T PLN00175 142 VILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT 185 (413)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC
Confidence 44455666667777888899998998863 57888888887763
No 289
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=45.28 E-value=59 Score=26.49 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=32.6
Q ss_pred HHhCCCccEEeecCcchHHHH----HHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 60 DLKKGKIPFYVNQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 60 ~~~~g~~p~~v~~t~gst~~~----a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
....|-.+++...+++.|... ...+|++++.+.. .+|++.++++|..
T Consensus 96 ll~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~----~~d~~~l~~~I~~ 146 (432)
T PRK06702 96 ICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP----NLTADEIVALAND 146 (432)
T ss_pred hcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC----CCCHHHHHHhCCc
Confidence 344566667777777766665 5667887777743 4788899988864
No 290
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.15 E-value=1.3e+02 Score=22.68 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=31.3
Q ss_pred HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEE
Q psy9815 30 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 69 (119)
Q Consensus 30 ~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~ 69 (119)
|+=+|+..+-| ++....|..+.+.+.++.....|+.++.
T Consensus 80 ~k~lGf~~IEi-S~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 80 CDELGFEAVEI-SDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred HHHcCCCEEEE-cCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 44578888888 7777889999999999999888876653
No 291
>KOG1357|consensus
Probab=44.58 E-value=25 Score=29.36 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=35.8
Q ss_pred ecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 71 NQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 71 ~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
..+|.|...||++-|..+|..+=|+ .+.||+.+++.+..|-
T Consensus 228 elNHaSi~~GaRLSgAtiRVfkHNd-----m~~LEr~Lrd~I~~gq 268 (519)
T KOG1357|consen 228 ELNHASLITGARLSGATTRVFRHND-----MQGLERLLRDAIVYGQ 268 (519)
T ss_pred cccchheeccccccCceEEEEecCC-----HHHHHHHHHHHHhcCC
Confidence 5789999999999999999988765 6899999999888773
No 292
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=43.86 E-value=1.5e+02 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.067 Sum_probs=30.7
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~ 59 (119)
++..+-........+...|.+++.+|+++ .+.++.+.|++++.+
T Consensus 119 vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (393)
T TIGR03538 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR 164 (393)
T ss_pred EEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence 44444445555566778899999999864 367889988887653
No 293
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=43.63 E-value=1.5e+02 Score=22.68 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=39.6
Q ss_pred hCCCccEEeecCc--chHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCCCCC
Q psy9815 62 KKGKIPFYVNQAH--SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 62 ~~g~~p~~v~~t~--gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~~pf 119 (119)
.+|-.++..-.+. .++...+...|+....|+. +.+.++.+.|...+......|..|+
T Consensus 14 ~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~-EHg~~~~~~l~~~i~a~~~~g~~~l 72 (267)
T PRK10128 14 RKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG-EHAPNTIQDLYHQLQAIAPYASQPV 72 (267)
T ss_pred HcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc-ccCCCCHHHHHHHHHHHHhcCCCeE
Confidence 3343444433333 3344445567888888888 5579999999999999998888764
No 294
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=43.26 E-value=1.9e+02 Score=23.80 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=32.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|+.++-.+.....++.+.|..++.+++++ ++.+|++.|++++.
T Consensus 235 Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~ 279 (517)
T PRK13355 235 VLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKIT 279 (517)
T ss_pred EEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcC
Confidence 44456666677777888899988888864 47899999988764
No 295
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=43.06 E-value=31 Score=20.35 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=18.5
Q ss_pred CCCCcCHHHHHHHHHHHHhCCCC
Q psy9815 95 DSYKLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 95 ~~~~m~~~~L~~~i~~~~~~G~~ 117 (119)
..+.++++.++..|+....+|++
T Consensus 22 ~~~~~s~~~ve~mL~~l~~kG~I 44 (69)
T PF09012_consen 22 REFGISPEAVEAMLEQLIRKGYI 44 (69)
T ss_dssp HHTT--HHHHHHHHHHHHCCTSC
T ss_pred HHHCcCHHHHHHHHHHHHHCCcE
Confidence 45788999999999999999986
No 296
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=43.05 E-value=53 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=26.1
Q ss_pred eeeeecCCccccHH-HHHhccCceeEEeecCCCcc
Q psy9815 14 LVGYCSDQAHSSVE-RAGLLGGVTIRGLPADDSYK 47 (119)
Q Consensus 14 lvv~~s~~~H~S~~-ka~~~~G~~~~~v~~d~~~~ 47 (119)
-.++.++..|.+.. ..+...|..++.++.+++..
T Consensus 42 ~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 42 DEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred CEEEEeecccceehhhHHHhcCCEEEEeccCCCCc
Confidence 34677778888887 77888899999998876543
No 297
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=43.02 E-value=42 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=26.4
Q ss_pred ecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHH
Q psy9815 18 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA 55 (119)
Q Consensus 18 ~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~ 55 (119)
.++-.+......+...|+.++.+|.++++.+|.++|++
T Consensus 106 v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~ 143 (353)
T PRK05387 106 FPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR 143 (353)
T ss_pred EeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh
Confidence 33444444445567788888888888788888887753
No 298
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=42.73 E-value=91 Score=25.29 Aligned_cols=45 Identities=13% Similarity=-0.003 Sum_probs=30.0
Q ss_pred HhCCCccEEeecCcchHHHHHHh----cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~~a~~----~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
...|-.+++....++.|...... .|++++.++++ |+++|+++|..
T Consensus 100 l~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~ 148 (433)
T PRK08134 100 MGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRP 148 (433)
T ss_pred hCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCC
Confidence 34555667777778776554432 67788888764 67888887753
No 299
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.62 E-value=24 Score=26.74 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=45.0
Q ss_pred HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHH-------------HHhcCceeEEeec---
Q psy9815 30 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERA-------------GLLGGVTIRGLPA--- 93 (119)
Q Consensus 30 ~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~-------------a~~~g~~~~~v~~--- 93 (119)
|+=+|+..+-| +|....|..+...+.|+..++.|+.++.=+...-..... ..-.|...+.|..
T Consensus 93 ~k~lGf~~IEi-SdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEs 171 (244)
T PF02679_consen 93 CKELGFDAIEI-SDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARES 171 (244)
T ss_dssp HHHCT-SEEEE---SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT
T ss_pred HHHcCCCEEEe-cCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeecc
Confidence 45588888888 777788899999999999999998877665533322221 2223445666643
Q ss_pred ------CCCCCcCHHHHHHHHHH
Q psy9815 94 ------DDSYKLRGDALEAAIEE 110 (119)
Q Consensus 94 ------d~~~~m~~~~L~~~i~~ 110 (119)
|++|.++.+.+++.+++
T Consensus 172 G~~Gi~~~~g~~r~d~v~~i~~~ 194 (244)
T PF02679_consen 172 GKGGIYDNDGEVRTDLVEKIIER 194 (244)
T ss_dssp --STTB-TTS-B-HHHHHHHHTT
T ss_pred CCCCccCCCCCccHHHHHHHHHh
Confidence 34566666666665543
No 300
>PRK08637 hypothetical protein; Provisional
Probab=42.56 E-value=1.1e+02 Score=23.80 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=28.9
Q ss_pred eeecCCccccHHHHH-hccCceeEEeecC-CCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAG-LLGGVTIRGLPAD-DSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~-~~~G~~~~~v~~d-~~~~m~~~~L~~~i~ 58 (119)
|+..+-.+.....+. ...|.+++.+|.+ +++.++.+.|++++.
T Consensus 96 Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~ 140 (388)
T PRK08637 96 VLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQ 140 (388)
T ss_pred EEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCCHHHHHHHHH
Confidence 344444444555543 3578889899873 556789999988876
No 301
>PLN02483 serine palmitoyltransferase
Probab=42.32 E-value=78 Score=26.02 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=31.2
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.++.++..|.|+..++...|.+++.++.+ +.+.|++.+++
T Consensus 187 ~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~ 226 (489)
T PLN02483 187 LIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLRE 226 (489)
T ss_pred EEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHh
Confidence 46688999999999999999999988765 34666665554
No 302
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=42.12 E-value=51 Score=25.43 Aligned_cols=42 Identities=21% Similarity=-0.019 Sum_probs=30.6
Q ss_pred ecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 18 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 18 ~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
+.+-+......++...|..+..++.++.+.+|++.|++++.+
T Consensus 117 v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (368)
T PRK03317 117 GFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE 158 (368)
T ss_pred EeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc
Confidence 344444455566777888888888777788999999888764
No 303
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=41.31 E-value=57 Score=25.65 Aligned_cols=60 Identities=18% Similarity=0.016 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCccEEeecCcchHH---HHHH--hcCceeEEeecC-CCCCcCHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAHSSVE---RAGL--LGGVTIRGLPAD-DSYKLRGDALEAAIEE 110 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~gst~---~~a~--~~g~~~~~v~~d-~~~~m~~~~L~~~i~~ 110 (119)
.++..++......|-.+++..-+|++.. .... -.|.+++.++.+ +++.+|.++|++++++
T Consensus 98 ~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~ 163 (416)
T PRK00011 98 QANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE 163 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh
Confidence 3555566555556666677766776432 1111 234577778877 4589999999999965
No 304
>PRK08960 hypothetical protein; Provisional
Probab=41.23 E-value=52 Score=25.65 Aligned_cols=44 Identities=14% Similarity=0.018 Sum_probs=33.8
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
.+++++-.|.+....+...|..+..+|++. ++.++.+.|++.+.
T Consensus 118 ~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 118 HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 456677888887788888888888888865 35789998887664
No 305
>KOG0633|consensus
Probab=40.23 E-value=24 Score=27.68 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.6
Q ss_pred HHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHH
Q psy9815 79 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 112 (119)
Q Consensus 79 ~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~ 112 (119)
..|.+=|++|+++|..++|.|+.++..+.++.+.
T Consensus 126 v~A~iNd~eVvkvpl~pdF~lnvdai~evl~~ds 159 (375)
T KOG0633|consen 126 VDAAINDAEVVKVPLNPDFSLNVDAIAEVLELDS 159 (375)
T ss_pred EEeecCCceEEEecCCCCccccHHHHHHHHhccc
Confidence 3455667789999999999999999999998764
No 306
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=40.21 E-value=58 Score=25.50 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=29.6
Q ss_pred cCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 19 SDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 19 s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
++-.+......+...|..+..+|.++++.++++.|++++.
T Consensus 133 ~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~ 172 (380)
T PLN03026 133 CPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE 172 (380)
T ss_pred cCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHh
Confidence 3333434445667789999999988788999999988773
No 307
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=38.93 E-value=2.2e+02 Score=23.45 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=32.1
Q ss_pred eeecCCccccHHHHHh-ccCceeEEeecC--CCcccCHHHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDL 61 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~-~~G~~~~~v~~d--~~~~m~~~~L~~~i~~~~ 61 (119)
++..+-.+......+. ..|++++.||++ +++.++++.|++++++..
T Consensus 146 Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~ 194 (496)
T PLN02376 146 FLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQ 194 (496)
T ss_pred EEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHH
Confidence 3344444555555555 479999999985 468999999998876543
No 308
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=38.68 E-value=1.4e+02 Score=23.10 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC--CCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~ 109 (119)
+|.-.+......|-.+++..-+.......+...|.+++.|+.+++ +.+|.+.+++.+.
T Consensus 104 al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (388)
T PRK07366 104 GTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL 163 (388)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc
Confidence 333333333345545555566666777788889999999998743 5677888876653
No 309
>PRK05942 aspartate aminotransferase; Provisional
Probab=38.39 E-value=65 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=30.9
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|+.++-.+.....++...|.+++.+|.+. .+.++++.|++.+.
T Consensus 124 Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 168 (394)
T PRK05942 124 VLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVA 168 (394)
T ss_pred EEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhcc
Confidence 44556666666666777888888888864 35789998887663
No 310
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=38.37 E-value=51 Score=22.47 Aligned_cols=52 Identities=21% Similarity=0.224 Sum_probs=40.1
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeec-CCCC-CcCHHHHHHHHHHHHhCCCC
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPA-DDSY-KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~-d~~~-~m~~~~L~~~i~~~~~~G~~ 117 (119)
-+|-......|+.+..+--|+.+-.+.| |.++ -++.++|+++.+.+.+.|+.
T Consensus 72 f~FgltGilasV~~pLsd~gigIFavStydtDhiLVr~~dLekAv~~L~eaGhe 125 (128)
T COG3603 72 FDFGLTGILASVSQPLSDNGIGIFAVSTYDTDHILVREEDLEKAVKALEEAGHE 125 (128)
T ss_pred ccCCcchhhhhhhhhHhhCCccEEEEEeccCceEEEehhhHHHHHHHHHHcCCc
Confidence 3555566667888888888888888877 4443 45779999999999999985
No 311
>PRK06107 aspartate aminotransferase; Provisional
Probab=38.30 E-value=1.4e+02 Score=23.42 Aligned_cols=58 Identities=26% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 109 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i~ 109 (119)
+|.-.+......|-.+++..-++++........|...+.++++ +++.+++++|++++.
T Consensus 105 al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 164 (402)
T PRK06107 105 AIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT 164 (402)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC
Confidence 3444443333445555555555556666667777777777774 346799999998875
No 312
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=38.26 E-value=58 Score=24.97 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=29.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 57 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i 57 (119)
+++++-.+.....++...|..++.++.++++.++++.|++..
T Consensus 97 V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~ 138 (337)
T PRK03967 97 IVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKA 138 (337)
T ss_pred EEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhc
Confidence 334444454455567788999999988877889988887653
No 313
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=38.25 E-value=1.6e+02 Score=22.75 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCC-CccEEeecCcchHHHHHHhcCceeEEeecCC---CCCcCHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKG-KIPFYVNQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAI 108 (119)
Q Consensus 51 ~~L~~~i~~~~~~g-~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~---~~~m~~~~L~~~i 108 (119)
+.|.-.+......| -.+++..-+.+.....+...|.+++.++.++ .+.++.+++.+++
T Consensus 87 ~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~ 148 (364)
T PRK04781 87 EAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAA 148 (364)
T ss_pred HHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHH
Confidence 34444444333344 3455555677777777889999999999742 3467888886654
No 314
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=38.02 E-value=1.5e+02 Score=22.29 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=34.0
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
..|-.+++..-.|++...++.+.|.+++.++. +|.+.|++.+++
T Consensus 98 ~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~ 141 (360)
T TIGR00858 98 GKGDLILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEK 141 (360)
T ss_pred CCCCEEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHH
Confidence 45555666677888888889999988887764 578889988865
No 315
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=37.69 E-value=22 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHHHhCCCC
Q psy9815 79 RAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 79 ~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~~~~G~~ 117 (119)
-+|.++|+....|-.|++ -.+..+.-++.|.+++++|.|
T Consensus 10 LAA~il~vG~~Rvwidp~~~eei~~A~TR~dIr~LIk~g~I 50 (150)
T COG2147 10 LAADILGVGENRVWIDPNEIEEIASAITREDIRALIKDGVI 50 (150)
T ss_pred HHHHHHccCcceeeeChHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 578899997777766654 344456666777888888875
No 316
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=37.65 E-value=1.3e+02 Score=23.14 Aligned_cols=46 Identities=20% Similarity=0.049 Sum_probs=33.1
Q ss_pred HhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
...|-.+++...+|.+...+..+.|.++..++. .|.++|++.+++.
T Consensus 123 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~ 168 (397)
T PRK06939 123 LGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEA 168 (397)
T ss_pred CCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhh
Confidence 344555566666778888888888887776654 5889999988753
No 317
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.28 E-value=50 Score=25.31 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=23.8
Q ss_pred eEEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 88 IRGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 88 ~~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
....|.+++|++|.+.|++.++.....|.
T Consensus 14 a~vTPf~~dg~iD~~~l~~li~~l~~~Gv 42 (303)
T PRK03620 14 FPVTPFDADGSFDEAAYREHLEWLAPYGA 42 (303)
T ss_pred eeeCCCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 33446789999999999999999888764
No 318
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=37.25 E-value=2.3e+02 Score=23.15 Aligned_cols=93 Identities=24% Similarity=0.319 Sum_probs=53.9
Q ss_pred ccHHHHHhccCce-eEEeecCCCcccCHHHHHHHHHHHHhCCCccEEe--ecCcchHHHHHHhcC----ceeEEeecCCC
Q psy9815 24 SSVERAGLLGGVT-IRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYV--NQAHSSVERAGLLGG----VTIRGLPADDS 96 (119)
Q Consensus 24 ~S~~ka~~~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v--~~t~gst~~~a~~~g----~~~~~v~~d~~ 96 (119)
.|-.+||..+|+. +.--|-..-..-+++.++..++....+..+=|.. .-|.+-..+ ..++. ..++...-+..
T Consensus 74 ~tgs~AAa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~-~~~~~~~~~~g~~~F~~~~~ 152 (430)
T COG0044 74 ETGSRAAAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGK-LELTERGVEAGFKGFMDDST 152 (430)
T ss_pred HHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccch-hhhhhhhhccceEEEecCCc
Confidence 5667888889984 3333433333447888888888776554331222 112211110 11111 23444444555
Q ss_pred CCcCHHHHHHHHHHHHhCCCC
Q psy9815 97 YKLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 97 ~~m~~~~L~~~i~~~~~~G~~ 117 (119)
+.++...++++++.....|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ 173 (430)
T COG0044 153 GALDDDVLEEALEYAAELGAL 173 (430)
T ss_pred CcCCHHHHHHHHHHHHhcCCe
Confidence 789999999999999988854
No 319
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=37.22 E-value=20 Score=25.21 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=27.9
Q ss_pred HHHHHhcCceeEEeecCCCC--CcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~~--~m~~~~L~~~i~~~~~~G~~ 117 (119)
..||.++|+....|-.|++. .+..+.-++.|.+++.+|+|
T Consensus 9 RLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I 50 (150)
T PRK08570 9 RLAADILGVGVSRVWIDPEALEDVAEAITREDIRELIKEGVI 50 (150)
T ss_pred HHHHHHHCCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCe
Confidence 35888999987777666552 23335556777888888876
No 320
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.02 E-value=1.4e+02 Score=20.75 Aligned_cols=81 Identities=16% Similarity=0.131 Sum_probs=52.0
Q ss_pred cHHHHHhccCcee-EEeecCCCcccCHH-HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCc
Q psy9815 25 SVERAGLLGGVTI-RGLPADDSYKLRGD-ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKL 99 (119)
Q Consensus 25 S~~ka~~~~G~~~-~~v~~d~~~~m~~~-~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m 99 (119)
++.++++++|..+ .+ ++.. -+...+.....++...|.+-.+-+..++++.-+-- ++..+-+.+ +.+
T Consensus 15 ~i~~~~~~~g~~~~~r--------v~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~-g~f 85 (172)
T PF03808_consen 15 PIVWAARLLGRPLPER--------VTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHH-GYF 85 (172)
T ss_pred HHHHHHHHcCCCCCcc--------cCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecC-CCC
Confidence 5677787777655 33 3333 34455555556678889998888988888777765 455554432 345
Q ss_pred CHHHHHHHHHHHHhC
Q psy9815 100 RGDALEAAIEEDLKK 114 (119)
Q Consensus 100 ~~~~L~~~i~~~~~~ 114 (119)
+.+..++.+++..+.
T Consensus 86 ~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 86 DEEEEEAIINRINAS 100 (172)
T ss_pred ChhhHHHHHHHHHHc
Confidence 776777666665544
No 321
>KOG0633|consensus
Probab=36.77 E-value=33 Score=26.93 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=38.4
Q ss_pred CeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
++...+..+.-|++. |.+-++.++++|...++.|+.++..+.++.+
T Consensus 113 KIl~cPPtysMY~v~--A~iNd~eVvkvpl~pdF~lnvdai~evl~~d 158 (375)
T KOG0633|consen 113 KILDCPPTYSMYVVD--AAINDAEVVKVPLNPDFSLNVDAIAEVLELD 158 (375)
T ss_pred ceeecCCcceeEEEE--eecCCceEEEecCCCCccccHHHHHHHHhcc
Confidence 666777888888886 6677888999999999999999988888765
No 322
>PRK06225 aspartate aminotransferase; Provisional
Probab=36.37 E-value=70 Score=24.79 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=30.5
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC---CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~---~~~m~~~~L~~~i~ 58 (119)
++.++-.+.....++...|..++.+|++. .+.++++.|++.+.
T Consensus 110 vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~ 155 (380)
T PRK06225 110 AVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD 155 (380)
T ss_pred EEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC
Confidence 34445556666677778888888888742 46889988887664
No 323
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=36.14 E-value=1.8e+02 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.2
Q ss_pred eecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcc
Q psy9815 40 LPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHS 75 (119)
Q Consensus 40 v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~g 75 (119)
.|-++ +.+|.+.+++.++...+.|..-+++.++.|
T Consensus 10 TPf~~-g~iD~~~~~~li~~l~~~Gv~Gl~~~GstG 44 (279)
T cd00953 10 TPFTG-NKIDKEKFKKHCENLISKGIDYVFVAGTTG 44 (279)
T ss_pred cCcCC-CCcCHHHHHHHHHHHHHcCCcEEEEcccCC
Confidence 46677 999999999999999998877777777665
No 324
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=36.10 E-value=1e+02 Score=20.54 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=27.3
Q ss_pred CeeeeecCCccccHHHHHhccCc-------eeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLLGGV-------TIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~G~-------~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
|+++|+-+..-|.- ++..|. +++.|++--.|++++..+.+++++.
T Consensus 1 kIl~F~C~~~ay~a---ad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~G 52 (124)
T PF02662_consen 1 KILAFCCNWCAYAA---ADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKG 52 (124)
T ss_pred CEEEEEeCCCcHHH---HHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcC
Confidence 35566655544433 444441 3444444456899999999998775
No 325
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=35.83 E-value=87 Score=23.55 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=29.8
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
.|++++..|.+...++...|..+..++. ++.+.+++.+.+.
T Consensus 87 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~ 127 (349)
T cd06454 87 LIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREA 127 (349)
T ss_pred EEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHh
Confidence 3556788899888888888888777752 4667777777653
No 326
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=35.57 E-value=79 Score=25.97 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=39.5
Q ss_pred HhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHH----HHHhcCceeEEeecCCCCCcC
Q psy9815 30 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVER----AGLLGGVTIRGLPADDSYKLR 100 (119)
Q Consensus 30 ~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~----~a~~~g~~~~~v~~d~~~~m~ 100 (119)
+.+.|+.+.....-+....-.++..=+....+.++...++....|+++.. -+...|++++.++.++++..|
T Consensus 120 ~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d 194 (429)
T PF02347_consen 120 CELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD 194 (429)
T ss_dssp HHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-
T ss_pred HHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc
Confidence 44677776655444433333333322222222333468888899988875 455578899999988877775
No 327
>PRK08068 transaminase; Reviewed
Probab=35.03 E-value=83 Score=24.50 Aligned_cols=43 Identities=7% Similarity=0.024 Sum_probs=31.7
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
++..+-++.....++...|.+++.+|+++ .+.++.++|++.+.
T Consensus 121 vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~ 165 (389)
T PRK08068 121 ILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA 165 (389)
T ss_pred EEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc
Confidence 44556666666777788899999999874 46788888877763
No 328
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=34.92 E-value=26 Score=24.55 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHhcCceeEEeecCCC--CCcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~--~~m~~~~L~~~i~~~~~~G~~ 117 (119)
.-||.++++....|-.|++ -.+..+.-++.|.+++.+|+|
T Consensus 6 RLAA~iL~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I 47 (145)
T cd01418 6 RLAADILGVGINRVWIDPERLEEVAEAITRDDIRALIKEGVI 47 (145)
T ss_pred HHHHHHHCCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 3588899998877776665 223335556677788888876
No 329
>PRK07568 aspartate aminotransferase; Provisional
Probab=34.82 E-value=1.3e+02 Score=23.36 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCC-CC-Cc-CHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADD-SY-KL-RGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~-~~-~m-~~~~L~~~i~~ 110 (119)
+|.-.+......|-.+++..-+++.....+...|++++.|++++ ++ .+ +.+.|+++++.
T Consensus 100 al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~ 161 (397)
T PRK07568 100 AILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP 161 (397)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc
Confidence 33334333334555555555566666666788899999999863 33 32 56888887743
No 330
>PRK07777 aminotransferase; Validated
Probab=34.62 E-value=78 Score=24.60 Aligned_cols=43 Identities=21% Similarity=0.149 Sum_probs=30.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCC---cccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~---~~m~~~~L~~~i~ 58 (119)
++...-.|.+...++...|..++.++.++. +.++++.|++.+.
T Consensus 112 vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (387)
T PRK07777 112 VLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT 157 (387)
T ss_pred EEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC
Confidence 344455566667777788888888887653 5789998888764
No 331
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=34.25 E-value=2.2e+02 Score=22.13 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=67.5
Q ss_pred CccccccCeeeeecCCccccHH---HHHh-c--cCc--------eeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEee
Q psy9815 6 KDSDIIANLVGYCSDQAHSSVE---RAGL-L--GGV--------TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVN 71 (119)
Q Consensus 6 ~~~~~~~~lvv~~s~~~H~S~~---ka~~-~--~G~--------~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~ 71 (119)
++.+-..+.+++.-..+| +++ .||. + -|- .+++.....++.+|..+.-..-+. ---|.++.
T Consensus 146 ke~G~~~kPvLLKRg~~a-TieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~----THLPVivD 220 (286)
T COG2876 146 KEVGRQNKPVLLKRGLSA-TIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQE----THLPVIVD 220 (286)
T ss_pred HHhcccCCCeEEecCccc-cHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhh----cCCCEEEC
Confidence 344445677777655544 343 2232 1 111 355555556789998876544332 24599999
Q ss_pred cCcch--------HHHHHHhcCceeEEeec---------CCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 72 QAHSS--------VERAGLLGGVTIRGLPA---------DDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 72 ~t~gs--------t~~~a~~~g~~~~~v~~---------d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
-+|++ ..++|.-.|..-..+.+ |....|+++.+++-+++.+.-|.
T Consensus 221 pSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 221 PSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred CCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 99987 45778888884444433 56678999999999998876554
No 332
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.97 E-value=67 Score=24.23 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCCcccCHHHHHHHHHHHH--hCCCccEEeecCcchHHHHHH------hcCce-eEEeecCCCCCcCHHHHHHHHHHHHh
Q psy9815 43 DDSYKLRGDALEAAIEEDL--KKGKIPFYVNQAHSSVERAGL------LGGVT-IRGLPADDSYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 43 d~~~~m~~~~L~~~i~~~~--~~g~~p~~v~~t~gst~~~a~------~~g~~-~~~v~~d~~~~m~~~~L~~~i~~~~~ 113 (119)
.+...|..+.-.+.++... ..+..|+++...+.||..+.. -+|+. +-.++. --++.+.+.+.+-+++...
T Consensus 46 GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P-~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 46 GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP-YYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES-TSSSCCHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc-ccccchhhHHHHHHHHHHh
Confidence 3445666665555443322 244556666555556654433 34553 333433 3345677777777766554
Q ss_pred CC
Q psy9815 114 KG 115 (119)
Q Consensus 114 ~G 115 (119)
..
T Consensus 125 ~~ 126 (289)
T PF00701_consen 125 AT 126 (289)
T ss_dssp HS
T ss_pred hc
Confidence 43
No 333
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=33.73 E-value=2.3e+02 Score=22.10 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=30.0
Q ss_pred eecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 17 YCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 17 ~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
+.++-++......+...|..+..++.+. ++.++++.|++.+.
T Consensus 123 ~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~ 166 (401)
T TIGR01264 123 LVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLID 166 (401)
T ss_pred EEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhc
Confidence 3344445555667788899888887753 57899999987764
No 334
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=33.50 E-value=59 Score=18.49 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCCCC
Q psy9815 101 GDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 101 ~~~L~~~i~~~~~~G~~p 118 (119)
+.+|.+++++.+..|.++
T Consensus 12 G~aL~dtLDeli~~~~I~ 29 (49)
T PF02268_consen 12 GIALTDTLDELIQEGKIT 29 (49)
T ss_dssp HHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 578999999999999875
No 335
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=33.44 E-value=50 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=23.6
Q ss_pred eEEeecCCCCCcCHHHHHHHHHHHHh-CCC
Q psy9815 88 IRGLPADDSYKLRGDALEAAIEEDLK-KGK 116 (119)
Q Consensus 88 ~~~v~~d~~~~m~~~~L~~~i~~~~~-~G~ 116 (119)
....|-+++|.+|.+.+++.++.... .|.
T Consensus 10 a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv 39 (293)
T PRK04147 10 ALLTPFDEDGQIDEQGLRRLVRFNIEKQGI 39 (293)
T ss_pred eeECcCCCCCCcCHHHHHHHHHHHHhcCCC
Confidence 33446689999999999999999988 664
No 336
>KOG1368|consensus
Probab=33.20 E-value=45 Score=26.62 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=35.7
Q ss_pred eeeeecCCccccHHHHH---hccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~---~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
--+++.+.+|--.-.++ .+.|+.+++|....++.|+.+++++++.-
T Consensus 97 ~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~ 145 (384)
T KOG1368|consen 97 SEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRV 145 (384)
T ss_pred ceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcC
Confidence 34667777776655543 46788999998888999999999999863
No 337
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=32.82 E-value=70 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.104 Sum_probs=23.3
Q ss_pred EEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 89 RGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 89 ~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
...|-|++|.+|.+.|++.++.....|.
T Consensus 13 ~vTPf~~dg~iD~~~l~~li~~l~~~Gv 40 (296)
T TIGR03249 13 PVTPFDADGSFDEAAYRENIEWLLGYGL 40 (296)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHhcCC
Confidence 3346689999999999999999988763
No 338
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=32.78 E-value=1.1e+02 Score=23.47 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=29.6
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
.+++.+..|.+...++...|..+..++. +|++.|++.+.+.
T Consensus 128 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~ 168 (397)
T PRK06939 128 AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEA 168 (397)
T ss_pred EEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhh
Confidence 3556778888888888888887766654 4778888777653
No 339
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=32.61 E-value=81 Score=24.13 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=28.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 57 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i 57 (119)
++.++-.......++...|..+..+|++ ++.++.+.|++.+
T Consensus 108 v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~ 148 (359)
T PRK03158 108 TVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAI 148 (359)
T ss_pred EEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhc
Confidence 4444444445566677788888888887 5778888887765
No 340
>PRK07682 hypothetical protein; Validated
Probab=32.37 E-value=94 Score=24.02 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.3
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~ 58 (119)
++..+-.+.....++...|..+..++.+ +++.++++.|++++.
T Consensus 108 vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 152 (378)
T PRK07682 108 VLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT 152 (378)
T ss_pred EEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC
Confidence 4455666666667777788887778764 357888888887664
No 341
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=32.10 E-value=25 Score=19.49 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHhcCceeEEee--cCCCCCcCHHHHHHHHHHHHhCCCCC
Q psy9815 80 AGLLGGVTIRGLP--ADDSYKLRGDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 80 ~a~~~g~~~~~v~--~d~~~~m~~~~L~~~i~~~~~~G~~p 118 (119)
=|..+|+..-.|. .++..++..+.-++.++...+.|+.|
T Consensus 5 IA~~agvS~~TVSr~ln~~~~vs~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 5 IAREAGVSKSTVSRVLNGPPRVSEETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHTSSHHHHHHHHTTCSSSTHHHHHHHHHHHHHHTB-S
T ss_pred HHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 3455565444443 24556788888777778888889988
No 342
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=31.83 E-value=2.8e+02 Score=22.47 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=28.4
Q ss_pred cHHHHHh-ccCceeEEeecCC--CcccCHHHHHHHHHHHHhCC
Q psy9815 25 SVERAGL-LGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG 64 (119)
Q Consensus 25 S~~ka~~-~~G~~~~~v~~d~--~~~m~~~~L~~~i~~~~~~g 64 (119)
....... -.|+.++.|++++ .+.+++++|++++.+..++|
T Consensus 156 ~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~ 198 (447)
T PLN02607 156 GFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAAN 198 (447)
T ss_pred chHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhC
Confidence 3333343 3688888888863 46799999999998765554
No 343
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=31.78 E-value=49 Score=21.04 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhCCCCC
Q psy9815 101 GDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 101 ~~~L~~~i~~~~~~G~~p 118 (119)
.+.+++++.+.+.+|+-|
T Consensus 11 l~~ie~~inELk~dG~eP 28 (85)
T PF08967_consen 11 LELIEEKINELKEDGFEP 28 (85)
T ss_dssp HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 467899999999999988
No 344
>PRK06855 aminotransferase; Validated
Probab=31.42 E-value=2.5e+02 Score=22.46 Aligned_cols=50 Identities=18% Similarity=0.087 Sum_probs=31.0
Q ss_pred HhCCCccEEeecCcchHHHH-HHhcCceeEEeecCC--CCCcCHHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVERA-GLLGGVTIRGLPADD--SYKLRGDALEAAIEE 110 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~~-a~~~g~~~~~v~~d~--~~~m~~~~L~~~i~~ 110 (119)
...|-.+++-.-+....... ....|++++.+++++ ++.+|+++|++++++
T Consensus 116 ~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~ 168 (433)
T PRK06855 116 LRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKY 168 (433)
T ss_pred cCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhc
Confidence 34454444444444443333 234588888888863 467999999999863
No 345
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=31.40 E-value=1.4e+02 Score=24.46 Aligned_cols=39 Identities=36% Similarity=0.330 Sum_probs=28.0
Q ss_pred CccccHHHH-HhccCceeEEeecCC--------C--cccCHHHHHHHHHH
Q psy9815 21 QAHSSVERA-GLLGGVTIRGLPADD--------S--YKLRGDALEAAIEE 59 (119)
Q Consensus 21 ~~H~S~~ka-~~~~G~~~~~v~~d~--------~--~~m~~~~L~~~i~~ 59 (119)
..||....+ ..+.|...+.+++++ . |.+|++.|++.+.+
T Consensus 123 ~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~ 172 (460)
T PRK13238 123 NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEE 172 (460)
T ss_pred CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhh
Confidence 447665554 567888888888853 2 44999999999864
No 346
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=31.38 E-value=1.1e+02 Score=24.01 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=19.8
Q ss_pred eeeeecCCccccHHHHHhccCceeEEee
Q psy9815 14 LVGYCSDQAHSSVERAGLLGGVTIRGLP 41 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~~~G~~~~~v~ 41 (119)
-+++++...|.|...++...|..+..++
T Consensus 133 ~~vi~~~~~h~s~~~~~~~~g~~~~~~~ 160 (410)
T PRK13392 133 CVILSDALNHASMIEGIRRSGAEKQVFR 160 (410)
T ss_pred CEEEEehhhhHHHHHHHHHcCCeEEEEe
Confidence 3566677788888777777777655553
No 347
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=31.30 E-value=27 Score=24.44 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=27.5
Q ss_pred HHHHHhcCceeEEeecCCCC--CcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~~--~m~~~~L~~~i~~~~~~G~~ 117 (119)
..||.++++....|-.|++. .+..+.-++.|.+++.+|+|
T Consensus 6 RLAA~vL~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I 47 (145)
T cd00481 6 RLAADILKCGKNRVWIDPNELEEIANANTREDIRKLIKDGLI 47 (145)
T ss_pred HHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 35888999988887766652 23334556677788888876
No 348
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=31.19 E-value=91 Score=23.88 Aligned_cols=42 Identities=24% Similarity=0.193 Sum_probs=28.8
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
+++++..+......+...|.+++.+|.+ ++.++++.|++.+.
T Consensus 111 vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~ 152 (367)
T PRK02731 111 VIYSEHGFAVYPIAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT 152 (367)
T ss_pred EEEecCCHHHHHHHHHHcCCeEEEeccc-CCCCCHHHHHHHhC
Confidence 4444555545555566788888888874 47788888887764
No 349
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=31.09 E-value=1.2e+02 Score=23.22 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=27.3
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
.+++++..|.+...++.+.|.....++ .++++.|++.+.+.
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~ 159 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLREN 159 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhh
Confidence 455677788888777777777655542 46677777766543
No 350
>PLN02187 rooty/superroot1
Probab=30.94 E-value=2.9e+02 Score=22.41 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=29.8
Q ss_pred eecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHH
Q psy9815 17 YCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 58 (119)
Q Consensus 17 ~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~ 58 (119)
+..+-.+......+...|..++.++.. +.+.+|.+.|++++.
T Consensus 159 lv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~ 202 (462)
T PLN02187 159 LLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD 202 (462)
T ss_pred EEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcC
Confidence 334444555556677889988888874 468999999987763
No 351
>PRK07681 aspartate aminotransferase; Provisional
Probab=30.86 E-value=1.1e+02 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|+..+-.+......+...|..++.+|.++ .+.++.+.|++++.
T Consensus 120 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 164 (399)
T PRK07681 120 ILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA 164 (399)
T ss_pred EEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 44556666777777888899999998875 35678888877663
No 352
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.78 E-value=1.3e+02 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.056 Sum_probs=29.9
Q ss_pred HhCCCccEEeecCcchHHH----HHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~----~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
...|-.++++...+|++.. ...-.|+++..++ +++ |++.|+++|..
T Consensus 105 l~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~ 154 (437)
T PRK05613 105 AGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQP 154 (437)
T ss_pred cCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCc
Confidence 3445566677778888742 3345677877776 332 78888888754
No 353
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=30.78 E-value=2.5e+02 Score=21.66 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=30.2
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
|+..+-.+.....++...|.++..+|.++ .+.++++.+++.+.
T Consensus 120 Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 120 VLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred EEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 44455556666667778899999998864 36678888877653
No 354
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=30.78 E-value=91 Score=23.81 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=28.9
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.|+.++..|.+...++.+.|..++.+|.. |.+.+++.+..
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~ 164 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRARVRRYPHN-----DVDALEALLAK 164 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCceEEeCCC-----CHHHHHHHHHh
Confidence 45567788999998888888888777643 55666666543
No 355
>PRK07550 hypothetical protein; Provisional
Probab=30.77 E-value=1.2e+02 Score=23.59 Aligned_cols=44 Identities=18% Similarity=-0.069 Sum_probs=30.4
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE 59 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~~ 59 (119)
|++++-.+......+...|..+..++.++ .+.++.+.|++.+++
T Consensus 117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~ 162 (386)
T PRK07550 117 VILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP 162 (386)
T ss_pred EEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc
Confidence 44555555555556677888888888864 456788888887753
No 356
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=30.59 E-value=2.1e+02 Score=21.43 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 57 IEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 57 i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
+......|-.+++..-.|+++..++...|.++..++. ++.+.+++.+++.
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~ 127 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREA 127 (349)
T ss_pred HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHh
Confidence 3333345655666677888888899999998887753 5778898888764
No 357
>PRK09148 aminotransferase; Validated
Probab=30.58 E-value=1.3e+02 Score=23.67 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|...+......|-.+++..-++......+...|.++..|++++++. ..+.|++.++.
T Consensus 104 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~ 161 (405)
T PRK09148 104 GFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRH 161 (405)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhh
Confidence 34444444444565666666777777778888999999999875533 34556666543
No 358
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=30.45 E-value=29 Score=24.82 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHhcCceeEEeecCCCC--CcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~~--~m~~~~L~~~i~~~~~~G~~ 117 (119)
..||.++|+....|-.|++. .+..+.-++.|.+++.+|+|
T Consensus 6 RLAA~vL~cG~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I 47 (164)
T cd01417 6 RLAASVLKCGKRKVWLDPNEISEISNANSRQSIRKLIKDGLI 47 (164)
T ss_pred HHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 35888999987777666552 23335556677888888876
No 359
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=30.38 E-value=1.3e+02 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=28.3
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+++++..|.+...++...|..++.++. ++.+.|++.+.+
T Consensus 102 ~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~ 141 (360)
T TIGR00858 102 LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEK 141 (360)
T ss_pred EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHH
Confidence 3556678888888888888887777653 466667666643
No 360
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.21 E-value=2.6e+02 Score=21.63 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=29.8
Q ss_pred hHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhC
Q psy9815 76 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 114 (119)
Q Consensus 76 st~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~ 114 (119)
...+.|.-.|++...+...++ .+.+.|.+.|++..+.
T Consensus 52 ~k~k~a~~~Gi~~~~~~l~~~--~~~~el~~~I~~lN~D 88 (284)
T PRK14190 52 GKKKAAEKVGIYSELYEFPAD--ITEEELLALIDRLNAD 88 (284)
T ss_pred HHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 677899999998888877664 6778899999887655
No 361
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=30.17 E-value=1e+02 Score=23.66 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=27.5
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALE 54 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~ 54 (119)
+++.+-.+......+...|+.+..+|+++++.++.+.++
T Consensus 105 vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~~~~~~~~l~ 143 (354)
T PRK04635 105 IACFGPTYGMYAISAETFNVGVKALPLTADYQLPLDYIE 143 (354)
T ss_pred EEEcCCChHHHHHHHHHcCCEEEEEecCCCCCCCHHHHH
Confidence 334444444455667888999999998877788887765
No 362
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=30.12 E-value=3.4e+02 Score=22.94 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=51.6
Q ss_pred ccCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEE
Q psy9815 11 IANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRG 90 (119)
Q Consensus 11 ~~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~ 90 (119)
.++..++.....-.....-+.++++.+......+ .+..+..+.+.+++|... +++. +.+...|.-+|++=..
T Consensus 107 ~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~-----~~e~~~~v~~lk~~G~~~--vvG~-~~~~~~A~~~g~~g~~ 178 (538)
T PRK15424 107 TSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVT-----EEDARGQINELKANGIEA--VVGA-GLITDLAEEAGMTGIF 178 (538)
T ss_pred CCcEEEEecCcccHHHHHHHHHhCCceEEEEecC-----HHHHHHHHHHHHHCCCCE--EEcC-chHHHHHHHhCCceEE
Confidence 3466666666666666666778888655543332 367888899999998654 3333 5556666667774333
Q ss_pred eecCCCCCcCHHHHHHHHHHH
Q psy9815 91 LPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 91 v~~d~~~~m~~~~L~~~i~~~ 111 (119)
+- +.+.+..++++.
T Consensus 179 ~~-------s~e~i~~a~~~A 192 (538)
T PRK15424 179 IY-------SAATVRQAFEDA 192 (538)
T ss_pred ec-------CHHHHHHHHHHH
Confidence 32 335555555543
No 363
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=29.39 E-value=1.1e+02 Score=23.88 Aligned_cols=42 Identities=5% Similarity=0.173 Sum_probs=30.4
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
++..+-++......+...|..++.||.++ +.++++.|++++.
T Consensus 108 vlv~~P~y~~~~~~~~~~g~~v~~v~~~~-~~~d~~~l~~~~~ 149 (366)
T PRK01533 108 IVTAGATFPQYRHHAIIEGCEVKEVALNN-GVYDLDEISSVVD 149 (366)
T ss_pred EEEcCCcHHHHHHHHHHcCCEEEEeecCC-CCcCHHHHHHHhC
Confidence 44445555556667788899999998864 5689998887764
No 364
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=29.22 E-value=48 Score=26.44 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=32.1
Q ss_pred CeeeeecCCccccHHHHHhc---cCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 13 NLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~---~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.-.++|.+.+|.....+..+ .+..-..+....+|+|+++.++..+..
T Consensus 74 ~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~ 123 (342)
T COG2008 74 GESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP 123 (342)
T ss_pred CCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC
Confidence 34577889999988765432 223333333346899999999998875
No 365
>KOG3434|consensus
Probab=29.10 E-value=1.4e+02 Score=20.37 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.0
Q ss_pred CCCCCcCHHHHHHHHHHHHh
Q psy9815 94 DDSYKLRGDALEAAIEEDLK 113 (119)
Q Consensus 94 d~~~~m~~~~L~~~i~~~~~ 113 (119)
.+++-||++.|++-+++-++
T Consensus 28 ~eDgI~d~A~fe~fLqerIK 47 (125)
T KOG3434|consen 28 VEDGILDIADLEKFLQERIK 47 (125)
T ss_pred cccccccHHHHHHHHHHHhh
Confidence 58899999999999986654
No 366
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=28.95 E-value=70 Score=22.31 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCC
Q psy9815 48 LRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDS 96 (119)
Q Consensus 48 m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~ 96 (119)
.-.+.+++.|......|-+++=..+--|||-.+|..+|=+..-++.++.
T Consensus 176 kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 176 KPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred CCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 3445667777776667765555567779999999999998888887653
No 367
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=28.92 E-value=31 Score=24.90 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=27.6
Q ss_pred HHHHHhcCceeEEeecCCCC--CcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~~--~m~~~~L~~~i~~~~~~G~~ 117 (119)
-.||.++++....|-.|++. .+..+.-++.|.+++.+|+|
T Consensus 7 RLAA~vL~cG~~rVWiDP~~~~eI~~A~tR~dIR~LIkdG~I 48 (175)
T PTZ00097 7 RLAASVLKCGKNRVWLDPNEASEISLANSRFSIRKLIKDGLI 48 (175)
T ss_pred HHHHHHHCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 35888999988777666652 23334556677788888876
No 368
>PRK13400 30S ribosomal protein S18; Provisional
Probab=28.87 E-value=44 Score=23.39 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCCCCC
Q psy9815 102 DALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 102 ~~L~~~i~~~~~~G~~pf 119 (119)
..|.++|.+.+..||.||
T Consensus 67 RkLakAIKRAR~laLLPf 84 (147)
T PRK13400 67 RALANAIKRARFIALMPF 84 (147)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 678999999999999998
No 369
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=28.67 E-value=2.5e+02 Score=21.49 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=33.5
Q ss_pred HHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 58 EEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 58 ~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
......|-..++...+|+++..+..+.|.++..++ .+|.+.|++.+++.
T Consensus 111 ~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~ 159 (385)
T TIGR01825 111 SALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLREN 159 (385)
T ss_pred HHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhh
Confidence 33344555556666778888888888887665543 47888898888754
No 370
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=28.63 E-value=2e+02 Score=21.99 Aligned_cols=68 Identities=18% Similarity=0.083 Sum_probs=51.2
Q ss_pred CcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeE--EeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 45 SYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIR--GLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 45 ~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~--~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
.|-.++..|+-.+++. -+|+++++-.|+..-++..|-+.+- .+.|.=...=|+....++.....+.|.
T Consensus 166 ~G~~n~~~l~iiie~a----~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 166 LGLQNPYNLEIIIEEA----DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGR 235 (262)
T ss_pred cCcCCHHHHHHHHHhC----CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhH
Confidence 4777788887777664 4899999999999999988877444 444444456788888888887777664
No 371
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=28.29 E-value=3.5e+02 Score=22.54 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=51.9
Q ss_pred ccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccE-EeecCcch-------HHHHHHhcCceeEEee-cCCCCCcCHH
Q psy9815 32 LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF-YVNQAHSS-------VERAGLLGGVTIRGLP-ADDSYKLRGD 102 (119)
Q Consensus 32 ~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~-~v~~t~gs-------t~~~a~~~g~~~~~v~-~d~~~~m~~~ 102 (119)
--|+.+.+| .|. -=+.+.++..++..++.|.... +++.+... .+.+-.+....+..|- .|-.|.+.|.
T Consensus 116 ~~Gidi~Ri-fd~--lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~ 192 (468)
T PRK12581 116 QNGIDVFRI-FDA--LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPK 192 (468)
T ss_pred HCCCCEEEE-ccc--CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 366766666 333 2278899999999988886542 33332221 1223333333333443 3667899999
Q ss_pred HHHHHHHHHHhCCCCC
Q psy9815 103 ALEAAIEEDLKKGKIP 118 (119)
Q Consensus 103 ~L~~~i~~~~~~G~~p 118 (119)
...+.+...++..-+|
T Consensus 193 ~v~~Lv~alk~~~~~p 208 (468)
T PRK12581 193 AAKELVSGIKAMTNLP 208 (468)
T ss_pred HHHHHHHHHHhccCCe
Confidence 9999998887765455
No 372
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=28.24 E-value=2.6e+02 Score=21.04 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=59.0
Q ss_pred eecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 40 LPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 40 v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
.|.+.++.|...++++.+.+.....+-.++++..-++.+.-+.++.- .+..|-+- +.......+++++...+.+.
T Consensus 142 ~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~g~viVt~p--~~~~~~~v~ka~~~~~~~~~ 219 (265)
T COG0489 142 VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTP--GKTALEDVKKAIDMLEKAGI 219 (265)
T ss_pred CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhccCCeEEEEeCC--ccchHHHHHHHHHHHHhcCC
Confidence 56677899999999999998877768888999999999988888876 34444442 35788888888888777663
No 373
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=28.06 E-value=34 Score=27.00 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=28.7
Q ss_pred HHHHHhcCceeEEeecCCCC--CcCHHHHHHHHHHHHhCCCC
Q psy9815 78 ERAGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 78 ~~~a~~~g~~~~~v~~d~~~--~m~~~~L~~~i~~~~~~G~~ 117 (119)
..++.+||+....|-.|++. .+....-++.|++++.+|+|
T Consensus 9 RLAAsVL~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlI 50 (357)
T PTZ00436 9 RLAADILRCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLI 50 (357)
T ss_pred HHHHHHhCCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCe
Confidence 35788999977777666552 33345667788888899986
No 374
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.99 E-value=2.6e+02 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=36.3
Q ss_pred eecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 70 VNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 70 v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
++..|.....=+.-.|+++..+.. +.....+..|.+.++..+..|.
T Consensus 173 ~v~~H~af~Y~~~~ygl~~~~~~~-~~~eps~~~l~~l~~~ik~~~v 218 (266)
T cd01018 173 FMVYHPAWGYFARDYGLTQIPIEE-EGKEPSPADLKRLIDLAKEKGV 218 (266)
T ss_pred EEEECchhHHHHHHcCCEEEecCC-CCCCCCHHHHHHHHHHHHHcCC
Confidence 456888999999999998877643 5557889999998888777653
No 375
>PRK03321 putative aminotransferase; Provisional
Probab=27.93 E-value=1.1e+02 Score=23.37 Aligned_cols=31 Identities=26% Similarity=0.167 Sum_probs=24.1
Q ss_pred HHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 28 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 28 ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
.+++..|..++.+|.++++.++++.+++.+.
T Consensus 113 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~ 143 (352)
T PRK03321 113 ILVQVAGATPVQVPLTPDHTHDLDAMAAAIT 143 (352)
T ss_pred HHHHHcCCEEEEccCCCCCCCCHHHHHHhhc
Confidence 3456788888889888668888888887764
No 376
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=27.81 E-value=1.8e+02 Score=23.42 Aligned_cols=48 Identities=8% Similarity=-0.056 Sum_probs=31.0
Q ss_pred CCCccEEeecCcchHHHHHHh----------cCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 63 KGKIPFYVNQAHSSVERAGLL----------GGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 63 ~g~~p~~v~~t~gst~~~a~~----------~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.|-.+++....||+....+.. .++++..++.|++|.+|.++|++.+++
T Consensus 123 ~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~ 180 (452)
T PTZ00094 123 PHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA 180 (452)
T ss_pred CCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH
Confidence 454566666677766544321 112444556777899999999999965
No 377
>PLN02822 serine palmitoyltransferase
Probab=27.61 E-value=2.2e+02 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=29.9
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
+++.....|+|+..++.+.|..++.++.+ +.+.|++.+++.
T Consensus 195 ~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~ 235 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKL 235 (481)
T ss_pred EEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHH
Confidence 35577889999999998888888888655 345666666543
No 378
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=27.54 E-value=64 Score=20.39 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=17.4
Q ss_pred CcCHHHHHHHHHHHHhCCCC
Q psy9815 98 KLRGDALEAAIEEDLKKGKI 117 (119)
Q Consensus 98 ~m~~~~L~~~i~~~~~~G~~ 117 (119)
.|+...++++|+.+..+|+|
T Consensus 76 ~~~~~~v~~al~~L~~eG~I 95 (102)
T PF08784_consen 76 GMSENEVRKALDFLSNEGHI 95 (102)
T ss_dssp TS-HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHHHHHhCCeE
Confidence 68999999999999999985
No 379
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=27.37 E-value=1.7e+02 Score=22.64 Aligned_cols=58 Identities=14% Similarity=-0.037 Sum_probs=0.0
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhC--CCccEEeecCcchH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK--GKIPFYVNQAHSSV 77 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~--g~~p~~v~~t~gst 77 (119)
.+++++..|.|...+..+.+.....++. +|++.|++.+.+.... ....+++...+..+
T Consensus 124 ~vi~~~~~~~s~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~t 183 (393)
T TIGR01822 124 AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEARAAGARHRLIATDGVFSMD 183 (393)
T ss_pred EEEEeccccHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhhcCCCceEEEEeCCccCC
No 380
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=27.31 E-value=49 Score=16.08 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.2
Q ss_pred eecCCCCCcCHHHHHHHHHH
Q psy9815 91 LPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 91 v~~d~~~~m~~~~L~~~i~~ 110 (119)
+..|.+|.++.+.|...+..
T Consensus 9 ~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 9 FDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp H-TTSSSEEEHHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHH
Confidence 45788999999999998874
No 381
>PRK07908 hypothetical protein; Provisional
Probab=26.55 E-value=1e+02 Score=23.54 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=29.1
Q ss_pred cEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHH
Q psy9815 67 PFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALE 105 (119)
Q Consensus 67 p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~ 105 (119)
+.+..-+.......+...|+++..+++|+++.+|.++++
T Consensus 99 viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l~ 137 (349)
T PRK07908 99 AAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAVP 137 (349)
T ss_pred EEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHhc
Confidence 334445555556777889999999999887889988664
No 382
>PRK06234 methionine gamma-lyase; Provisional
Probab=26.49 E-value=2.9e+02 Score=21.92 Aligned_cols=53 Identities=11% Similarity=0.076 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+..++......|-.+++....++++. .++...|++++.++.+ |++.|++++..
T Consensus 92 i~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~ 148 (400)
T PRK06234 92 ISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKA 148 (400)
T ss_pred HHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhcc
Confidence 44444444455655666666665544 3446678888777653 67888887753
No 383
>PLN02955 8-amino-7-oxononanoate synthase
Probab=26.43 E-value=1.3e+02 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.5
Q ss_pred CeeeeecCCccccHHHHHhcc
Q psy9815 13 NLVGYCSDQAHSSVERAGLLG 33 (119)
Q Consensus 13 ~lvv~~s~~~H~S~~ka~~~~ 33 (119)
.-++|.-+..|.|+.-++++.
T Consensus 200 ~d~i~~D~~~HaSI~dG~~ls 220 (476)
T PLN02955 200 KVAIFSDALNHASIIDGVRLA 220 (476)
T ss_pred CcEEEEeccchHHHHHHHHhc
Confidence 456888999999999888875
No 384
>PLN02822 serine palmitoyltransferase
Probab=26.33 E-value=3.4e+02 Score=22.25 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 54 EAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 54 ~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
..++......|-..++-...|+++..+..+.|.+++.++.+ |.+.|+..+++.
T Consensus 183 ~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~ 235 (481)
T PLN02822 183 FSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKL 235 (481)
T ss_pred HHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHH
Confidence 33444444566666667788999999999999988888765 356677776654
No 385
>KOG0634|consensus
Probab=25.94 E-value=99 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=33.8
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~ 60 (119)
.++..+.+..+.-.+.+-+|++++.|+.|++ -|+++.|++.+..-
T Consensus 150 ~vlie~~ty~~AL~s~~a~gv~~ipv~md~~-Gi~pE~l~~il~~w 194 (472)
T KOG0634|consen 150 HVLIEEYTYPSALQSMEALGVKIIPVKMDQD-GIDPESLEEILSNW 194 (472)
T ss_pred ceEEecccchHHHHhccccCceEEeccccCC-CCCHHHHHHHHhcC
Confidence 3555666666666666778999999988775 68999999988653
No 386
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=25.65 E-value=1.1e+02 Score=25.62 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=30.3
Q ss_pred EEeecCcchH-HHHHHhcCceeEEeec----------CCCCCcCHHHHHHHHHHH
Q psy9815 68 FYVNQAHSSV-ERAGLLGGVTIRGLPA----------DDSYKLRGDALEAAIEED 111 (119)
Q Consensus 68 ~~v~~t~gst-~~~a~~~g~~~~~v~~----------d~~~~m~~~~L~~~i~~~ 111 (119)
++....|..| .-.+.+.|+..+.+++ ..+|.||.+.|+++|++.
T Consensus 125 ~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~ 179 (467)
T TIGR02617 125 VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEV 179 (467)
T ss_pred ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhc
Confidence 3444455554 4457788887777643 246899999999999864
No 387
>PRK06290 aspartate aminotransferase; Provisional
Probab=25.65 E-value=3.4e+02 Score=21.51 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=29.2
Q ss_pred ecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHHH
Q psy9815 18 CSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE 58 (119)
Q Consensus 18 ~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i~ 58 (119)
..+-.+......+...|.++..+|.++ .+.++.+.|++++.
T Consensus 135 v~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~ 177 (410)
T PRK06290 135 MTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK 177 (410)
T ss_pred EeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc
Confidence 334444455566778899999999875 46778888887764
No 388
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=25.04 E-value=1.5e+02 Score=23.30 Aligned_cols=43 Identities=14% Similarity=0.178 Sum_probs=29.0
Q ss_pred eeecCCccccHHHHHhccCceeEEeecC--CCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d--~~~~m~~~~L~~~i~ 58 (119)
++.++-.+.....++...|+.++.++.+ +++.++.+.+++.+.
T Consensus 123 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 167 (403)
T TIGR01265 123 ILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALAD 167 (403)
T ss_pred EEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhC
Confidence 4445555555666677788887777764 356788888877653
No 389
>KOG0037|consensus
Probab=24.89 E-value=1e+02 Score=23.11 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=40.1
Q ss_pred EeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCc--------------------------eeEEee
Q psy9815 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGV--------------------------TIRGLP 92 (119)
Q Consensus 39 ~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~--------------------------~~~~v~ 92 (119)
.|..|..+++..+.|.+++..... .+ .+.+++=.++.+ -.+..+
T Consensus 65 ~vD~d~sg~i~~~eLq~aLsn~~~---~~-------Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D 134 (221)
T KOG0037|consen 65 SVDRDRSGRILAKELQQALSNGTW---SP-------FSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYD 134 (221)
T ss_pred hhCccccccccHHHHHHHhhcCCC---CC-------CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566788888888888764322 22 233333333322 245668
Q ss_pred cCCCCCcCHHHHHHHHHH
Q psy9815 93 ADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 93 ~d~~~~m~~~~L~~~i~~ 110 (119)
.|.+|.++...|+.|+..
T Consensus 135 ~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 135 RDRSGTIDSSELRQALTQ 152 (221)
T ss_pred cCCCCcccHHHHHHHHHH
Confidence 899999999999999875
No 390
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.49 E-value=91 Score=24.01 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=23.3
Q ss_pred EEeecCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 89 RGLPADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 89 ~~v~~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
...|-+++|.+|.+++++.++..++.|.
T Consensus 12 ~vTPF~~dg~vD~~a~~~lv~~li~~Gv 39 (299)
T COG0329 12 LVTPFDEDGSVDEEALRRLVEFLIAAGV 39 (299)
T ss_pred cccCCCCCCCcCHHHHHHHHHHHHHcCC
Confidence 3446677799999999999999999883
No 391
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.17 E-value=3.7e+02 Score=21.38 Aligned_cols=97 Identities=12% Similarity=-0.061 Sum_probs=61.8
Q ss_pred cCeeeeecCCccccHHHHHhc-------cCceeEEeecCCCcccC---HHHHHHHHHHHHhCCCccEEeecCcchHHHHH
Q psy9815 12 ANLVGYCSDQAHSSVERAGLL-------GGVTIRGLPADDSYKLR---GDALEAAIEEDLKKGKIPFYVNQAHSSVERAG 81 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~-------~G~~~~~v~~d~~~~m~---~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a 81 (119)
.++.+++-...-++.+.|.++ +|.+.+++.+-...++. +..+-++.++..++|+..|.++..---+-+..
T Consensus 135 ~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l 214 (326)
T PRK11840 135 KKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRL 214 (326)
T ss_pred cCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 367788888888888877653 45566666554433443 44444555566677988877766655555555
Q ss_pred HhcCceeEEeec------CCCCCcCHHHHHHHHHH
Q psy9815 82 LLGGVTIRGLPA------DDSYKLRGDALEAAIEE 110 (119)
Q Consensus 82 ~~~g~~~~~v~~------d~~~~m~~~~L~~~i~~ 110 (119)
.-+|. ..|.. ...|-.+++.++..+++
T Consensus 215 ~~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 215 EDAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred HhcCC--EEEeeccccccCCCCCCCHHHHHHHHHc
Confidence 55565 33322 34466688888888876
No 392
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=23.82 E-value=2.7e+02 Score=22.22 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=26.9
Q ss_pred HhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
...|-.+++....++.+. ..+...|++++.++.+ |.++|++++.+
T Consensus 93 ~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~ 141 (418)
T TIGR01326 93 AQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDE 141 (418)
T ss_pred hCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence 344545555555554442 3355678888777753 67888877743
No 393
>PRK07503 methionine gamma-lyase; Provisional
Probab=23.76 E-value=2.5e+02 Score=22.35 Aligned_cols=53 Identities=23% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+.-.+......|-.+++...+++.+. ..+...|++++.++.+ +++.|++++..
T Consensus 93 l~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~ 149 (403)
T PRK07503 93 ITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISD 149 (403)
T ss_pred HHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCc
Confidence 33333333445555555555555433 3445677777777764 57888887753
No 394
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.67 E-value=98 Score=21.89 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=27.7
Q ss_pred cccCHHHHHHHHHHHHhCCCccEEeecCcchHH
Q psy9815 46 YKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVE 78 (119)
Q Consensus 46 ~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~ 78 (119)
..+|.+.+++++++.+.+|...++++..|+..+
T Consensus 129 ~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~n 161 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKGVEAVAVSLLFSYRN 161 (176)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEECccCCCC
Confidence 457789999999999999998999988887543
No 395
>PRK07179 hypothetical protein; Provisional
Probab=23.40 E-value=3.7e+02 Score=21.05 Aligned_cols=50 Identities=16% Similarity=0.039 Sum_probs=33.5
Q ss_pred HHHHHHhCCCccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 56 AIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 56 ~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
+++.....|-..++..-.|.++..++...|.++..++. .|.+.|++++++
T Consensus 130 ~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~ 179 (407)
T PRK07179 130 LLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIER 179 (407)
T ss_pred HHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHh
Confidence 33333334555666777788888888888877654432 588999998864
No 396
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=23.27 E-value=1.9e+02 Score=22.40 Aligned_cols=42 Identities=21% Similarity=-0.007 Sum_probs=28.2
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
++..+-.+.+....+...|.++..+|.+.. .++.+.|.+.+.
T Consensus 111 vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~ 152 (369)
T PRK08153 111 VVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAAR 152 (369)
T ss_pred EEECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHhc
Confidence 445555666666667778888888887655 477777665543
No 397
>PRK07179 hypothetical protein; Provisional
Probab=23.26 E-value=1.7e+02 Score=22.97 Aligned_cols=40 Identities=23% Similarity=0.090 Sum_probs=28.2
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.+|.+...|.|+..++...|..+..++. .|++.|++.+++
T Consensus 140 ~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~ 179 (407)
T PRK07179 140 PVYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIER 179 (407)
T ss_pred EEEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHh
Confidence 4667899999998887777876555432 467777777643
No 398
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=23.10 E-value=2.5e+02 Score=20.29 Aligned_cols=50 Identities=24% Similarity=0.167 Sum_probs=28.1
Q ss_pred eeeeecCCccccHHHHHh---ccCceeEEeecCCCcccCHHHHHHHHHHHHhCC
Q psy9815 14 LVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKG 64 (119)
Q Consensus 14 lvv~~s~~~H~S~~ka~~---~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g 64 (119)
=++++.-.+|+|+...+. -.|..+..+ .|.....+.+.-+.+++.....|
T Consensus 148 ~lvi~G~~t~~CV~~Ta~~a~~~g~~v~vv-~Da~~~~~~~~~~~al~~~~~~g 200 (212)
T PTZ00331 148 RVFICGLAFDFCVLFTALDAVKLGFKVVVL-EDATRAVDPDAISKQRAELLEAG 200 (212)
T ss_pred EEEEEEeccCHHHHHHHHHHHHCCCEEEEe-CcCccCCCHHHHHHHHHHHHHCC
Confidence 355566666777665543 244444333 56555666666666666655444
No 399
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.06 E-value=3.1e+02 Score=20.05 Aligned_cols=49 Identities=12% Similarity=-0.023 Sum_probs=37.7
Q ss_pred EEeecCcchHHHHHHhcCceeEEee-cCCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 68 FYVNQAHSSVERAGLLGGVTIRGLP-ADDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 68 ~~v~~t~gst~~~a~~~g~~~~~v~-~d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
-.++..|.....=+..+|+++..+- ..+....+++.|.+.++..++.|.
T Consensus 151 ~~~v~~h~~~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v 200 (256)
T PF01297_consen 151 RPVVVYHDAFQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKV 200 (256)
T ss_dssp GEEEEEESTTHHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-
T ss_pred CeEEEEChHHHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCC
Confidence 4456789999999999999776665 667788999999999988887764
No 400
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.03 E-value=2.8e+02 Score=19.64 Aligned_cols=80 Identities=14% Similarity=-0.000 Sum_probs=47.4
Q ss_pred cHHHHHhccCce-eEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhcCc---eeEEeecCCCCCcC
Q psy9815 25 SVERAGLLGGVT-IRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGV---TIRGLPADDSYKLR 100 (119)
Q Consensus 25 S~~ka~~~~G~~-~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~g~---~~~~v~~d~~~~m~ 100 (119)
.+..+++++|.. ..+++ -++-....++....+++..|.+-++-+..++++..+-. ++..+-. +|.++
T Consensus 15 ~iv~~~r~~g~~~~~Rv~-------G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~--~g~f~ 85 (177)
T TIGR00696 15 GVVWGLKLLGYPQQSRVA-------GPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGA--FGPLE 85 (177)
T ss_pred HHHHHHHHcCCCCCCccC-------hHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEE--CCCCC
Confidence 455666777653 22221 23445566666667778889998888998888887743 2333333 45666
Q ss_pred HHHHHHHHHHHHh
Q psy9815 101 GDALEAAIEEDLK 113 (119)
Q Consensus 101 ~~~L~~~i~~~~~ 113 (119)
.+.-++.+++..+
T Consensus 86 ~~~~~~i~~~I~~ 98 (177)
T TIGR00696 86 PEERKAALAKIAR 98 (177)
T ss_pred hHHHHHHHHHHHH
Confidence 6544444444443
No 401
>PRK07324 transaminase; Validated
Probab=23.01 E-value=1.5e+02 Score=23.07 Aligned_cols=42 Identities=7% Similarity=-0.074 Sum_probs=27.3
Q ss_pred eeecCCccccHHHHHhccCceeEEeecCC--CcccCHHHHHHHH
Q psy9815 16 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAI 57 (119)
Q Consensus 16 v~~s~~~H~S~~ka~~~~G~~~~~v~~d~--~~~m~~~~L~~~i 57 (119)
++++.-++.+....+...|..++.+|+++ .+.++++.|++.+
T Consensus 107 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~ 150 (373)
T PRK07324 107 VISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLV 150 (373)
T ss_pred EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhC
Confidence 34445556666666777888888888764 2456777776554
No 402
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=22.83 E-value=4.7e+02 Score=22.12 Aligned_cols=96 Identities=19% Similarity=0.077 Sum_probs=55.2
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHhc----Cce
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLG----GVT 87 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~~----g~~ 87 (119)
.++.+++.-..-....+++..+|++...+...--..++.+.|++.+++. -..++++...+........+ ++.
T Consensus 231 ~di~iv~~G~~~~~a~ea~~~~Gi~~~v~~~~~i~Pld~~~i~~~~~~~----~~vivvEe~~~~~~~~~~~~~~~~~~~ 306 (595)
T TIGR03336 231 AKIGVIASGIAYNYVKEALERLGVDVSVLKIGFTYPVPEGLVEEFLSGV----EEVLVVEELEPVVEEQVKALAGTAGLN 306 (595)
T ss_pred CCEEEEEcCHHHHHHHHHHHHcCCCeEEEEeCCCCCCCHHHHHHHHhcC----CeEEEEeCCccHHHHHHHHHHHhcCCC
Confidence 3566666555555555677777876555544445677878777776542 12455555443322222221 222
Q ss_pred eEEeec-----CCCCCcCHHHHHHHHHHH
Q psy9815 88 IRGLPA-----DDSYKLRGDALEAAIEED 111 (119)
Q Consensus 88 ~~~v~~-----d~~~~m~~~~L~~~i~~~ 111 (119)
++.+-. ...+.||.+.+.++|.+.
T Consensus 307 v~~~G~~d~fi~~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 307 IKVHGKEDGFLPREGELNPDIVVNALAKF 335 (595)
T ss_pred eEEecccCCccCcccCcCHHHHHHHHHHh
Confidence 333322 255889999999999764
No 403
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=2.5e+02 Score=22.63 Aligned_cols=45 Identities=33% Similarity=0.237 Sum_probs=33.3
Q ss_pred eeeeecCCccccHH----HHHhccCceeEEeecCCCcccCHHHHHHHHH
Q psy9815 14 LVGYCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE 58 (119)
Q Consensus 14 lvv~~s~~~H~S~~----ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~ 58 (119)
--|+.|+.=|.|.. ..+.-.|+.++.+|.++++.++.+.+++.+.
T Consensus 112 deIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~ 160 (405)
T COG0520 112 DEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT 160 (405)
T ss_pred CEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcC
Confidence 34566676676654 3344468899999999999999999998543
No 404
>COG3720 HemS Putative heme degradation protein [Inorganic ion transport and metabolism]
Probab=22.80 E-value=50 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=34.0
Q ss_pred eEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHH
Q psy9815 37 IRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVE 78 (119)
Q Consensus 37 ~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~ 78 (119)
++.|..|=..++|..+|.+.+....+.|+..++.+.+-|++.
T Consensus 217 lrlvg~d~a~~vdn~al~~~l~~Aae~~lpIMvFVGNrgcvQ 258 (349)
T COG3720 217 LRLVGDDLAWRVDNSALAQMLESAAEDGLPIMVFVGNRGCVQ 258 (349)
T ss_pred HHHhccchhhhcCcHHHHHHHHHHhccCCceEEEEcCCcEEE
Confidence 444544446889999999999999999999999999988754
No 405
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=22.68 E-value=2.1e+02 Score=22.44 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=32.2
Q ss_pred ccEEeecCcchHHH----HHHhcCcee----EEeecCCCCCcCHHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVER----AGLLGGVTI----RGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 66 ~p~~v~~t~gst~~----~a~~~g~~~----~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
.+++....|.|... .+...|+++ +.++.++++.++.+.+++.++.
T Consensus 115 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 167 (406)
T TIGR01814 115 KILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEK 167 (406)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHh
Confidence 35555678888554 334568876 5677777789999999998864
No 406
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=22.50 E-value=45 Score=19.83 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=17.3
Q ss_pred CCcCHHHHHHHHHHHHhCCCCC
Q psy9815 97 YKLRGDALEAAIEEDLKKGKIP 118 (119)
Q Consensus 97 ~~m~~~~L~~~i~~~~~~G~~p 118 (119)
..++.+.+++.|-+..++|+.|
T Consensus 26 ~~~~~~eVe~~I~klakkG~tp 47 (60)
T PF08069_consen 26 LKYSPEEVEELIVKLAKKGLTP 47 (60)
T ss_dssp --S-HHHHHHHHHHHCCTTHCH
T ss_pred cCCCHHHHHHHHHHHHHcCCCH
Confidence 5688999999999999999876
No 407
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=22.43 E-value=91 Score=19.23 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.6
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q psy9815 95 DSYKLRGDALEAAIEEDLKK 114 (119)
Q Consensus 95 ~~~~m~~~~L~~~i~~~~~~ 114 (119)
-+|.+++..||.+++..+..
T Consensus 35 SdG~IRGA~LEaAl~~lR~~ 54 (72)
T PF09498_consen 35 SDGAIRGARLEAALRQLRQD 54 (72)
T ss_pred cCccchHHHHHHHHHHHHhh
Confidence 56789999999999887654
No 408
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=22.35 E-value=3.1e+02 Score=21.66 Aligned_cols=44 Identities=18% Similarity=0.036 Sum_probs=27.1
Q ss_pred HhCCCccEEeecCcchHHH----HHHhcCceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 61 LKKGKIPFYVNQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 61 ~~~g~~p~~v~~t~gst~~----~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
...|-.+++....++++.. .+...|++++.++++ +.+.++++++
T Consensus 97 ~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~ 144 (390)
T PRK08133 97 LQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVR 144 (390)
T ss_pred hCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcC
Confidence 3445455555556665543 345578888777764 5677777764
No 409
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=22.11 E-value=2.4e+02 Score=20.51 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=32.0
Q ss_pred ecCcchHHHHHHhc---------Cc----eeEEeec-CCCCCcCHHHHHHHHHHHHhCCC
Q psy9815 71 NQAHSSVERAGLLG---------GV----TIRGLPA-DDSYKLRGDALEAAIEEDLKKGK 116 (119)
Q Consensus 71 ~~t~gst~~~a~~~---------g~----~~~~v~~-d~~~~m~~~~L~~~i~~~~~~G~ 116 (119)
...|||...+.... |+ ++..+++ ++++..+...+.++|+...++|.
T Consensus 67 ~~~HGT~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 67 DNGHGTHVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGA 126 (260)
T ss_pred CCCcHHHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 45799877665432 22 5666664 55678889999999988887763
No 410
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=22.11 E-value=54 Score=16.11 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=16.3
Q ss_pred eecCCCCCcCHHHHHHHHHH
Q psy9815 91 LPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 91 v~~d~~~~m~~~~L~~~i~~ 110 (119)
+..|.+|.++.+.+.+.+++
T Consensus 9 ~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 9 FDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HSTTSSSEEEHHHHHHHHHH
T ss_pred HCCCCCCcCCHHHHHHHHHh
Confidence 46788999999999888764
No 411
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=22.08 E-value=2.6e+02 Score=21.98 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q psy9815 101 GDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 101 ~~~L~~~i~~~~~~G~~pf 119 (119)
.+..++..+++++.|++|+
T Consensus 283 ~~~~~~~~~~~~~~Gf~pY 301 (315)
T TIGR01370 283 PARMKDAAEKARAAGLIPY 301 (315)
T ss_pred HHHHHHHHHHHHHcCCeee
Confidence 4455677789999999986
No 412
>PRK09064 5-aminolevulinate synthase; Validated
Probab=22.05 E-value=2.1e+02 Score=22.32 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=20.0
Q ss_pred cCeeeeecCCccccHHHHHhccCceeEEee
Q psy9815 12 ANLVGYCSDQAHSSVERAGLLGGVTIRGLP 41 (119)
Q Consensus 12 ~~lvv~~s~~~H~S~~ka~~~~G~~~~~v~ 41 (119)
++.++++....|.|...++...|..+..++
T Consensus 131 ~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~ 160 (407)
T PRK09064 131 PDCVIFSDELNHASMIEGIRRSRCEKHIFR 160 (407)
T ss_pred CCCEEEEeCcchHHHHHHHHHcCCcEEEEC
Confidence 345677777788888777766666554443
No 413
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=22.00 E-value=1.7e+02 Score=23.81 Aligned_cols=50 Identities=24% Similarity=0.135 Sum_probs=36.3
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeec---CCCCCcCHHHHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED 111 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~---d~~~~m~~~~L~~~i~~~ 111 (119)
.++..+.++.-.|-|.-+++...|++++.|++ .+...-|.++.++++++.
T Consensus 99 ~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~ 151 (389)
T PF05889_consen 99 PKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL 151 (389)
T ss_dssp CT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH
T ss_pred cCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh
Confidence 34456778888889999999999999999986 344566678888888664
No 414
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=21.82 E-value=1.2e+02 Score=17.62 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHHHhCCCCCC
Q psy9815 99 LRGDALEAAIEEDLKKGKIPF 119 (119)
Q Consensus 99 m~~~~L~~~i~~~~~~G~~pf 119 (119)
.|..+|.+.+.+..++|..|+
T Consensus 12 ~d~~~fc~rVt~aL~~GW~l~ 32 (54)
T PF08410_consen 12 PDDSAFCHRVTEALNEGWQLY 32 (54)
T ss_pred CChHHHHHHHHHHHHcCCEec
Confidence 467899999999999998875
No 415
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=21.80 E-value=3.9e+02 Score=20.79 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=26.2
Q ss_pred hHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 76 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 76 st~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
+...+..+.|.+++.++.+ +.+|+++|+++|...
T Consensus 115 ~~~~~~~~~g~~~v~v~~~--~~~d~~~le~ai~~~ 148 (363)
T TIGR01437 115 PVETMVRLGGGKVVEAGYA--NECSAEQLEAAITEK 148 (363)
T ss_pred chHHHHHhcCCeEEEEcCC--CCCCHHHHHHhcChh
Confidence 3456678889888888764 469999999999653
No 416
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.42 E-value=3.9e+02 Score=20.67 Aligned_cols=60 Identities=10% Similarity=-0.072 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCccEEeecCcc----------hHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhC
Q psy9815 53 LEAAIEEDLKKGKIPFYVNQAHS----------SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 114 (119)
Q Consensus 53 L~~~i~~~~~~g~~p~~v~~t~g----------st~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~ 114 (119)
+++.++..+++|..|-...-..| ...++|.=+|++...+...++ .+-+.|.+.|++..+.
T Consensus 17 ik~~v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~--~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 17 VATEVRALAARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPAT--TTQAELLALIARLNAD 86 (282)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 33444444445666633333344 667889999998888777654 5778899999877654
No 417
>KOG1549|consensus
Probab=21.32 E-value=1.4e+02 Score=24.62 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=0.0
Q ss_pred ccEEeecCcchHHHHHHhc---CceeEEeecCCCCCcCHHHHHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIE 109 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~---g~~~~~v~~d~~~~m~~~~L~~~i~ 109 (119)
.++++...|.|+-.+++.+ |+.++.+|+++++-.|.+.|+++|+
T Consensus 133 ~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~ 179 (428)
T KOG1549|consen 133 HIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR 179 (428)
T ss_pred eEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC
No 418
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=21.17 E-value=1.2e+02 Score=24.82 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=19.9
Q ss_pred hcCceeEEeecCCCCCcCHHHHHHHHHH
Q psy9815 83 LGGVTIRGLPADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 83 ~~g~~~~~v~~d~~~~m~~~~L~~~i~~ 110 (119)
-.|++.+.|+..++|.+|.++++++++.
T Consensus 126 e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~ 153 (403)
T PF06838_consen 126 EFGIKYREVPLTEDGTIDWEAIKKALKP 153 (403)
T ss_dssp GGT-EEEE--B-TTSSB-HHHHHHHHHT
T ss_pred HhCceeEEEeecCCCCcCHHHHHHhhcc
Confidence 3456899999999999999999999974
No 419
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=20.93 E-value=3.8e+02 Score=20.31 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred ccEEeecCcchHHHHHHhcCceeEEeecCCCCCcCHHHHH
Q psy9815 66 IPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALE 105 (119)
Q Consensus 66 ~p~~v~~t~gst~~~a~~~g~~~~~v~~d~~~~m~~~~L~ 105 (119)
.+.+..-+.+.....+...|.+++.||+++ ..++.+.++
T Consensus 81 ~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~~~~~~~l~ 119 (332)
T PRK06425 81 NIIIVEPNFNEYKGYAFTHGIRISALPFNL-INNNPEILN 119 (332)
T ss_pred cEEEeCCChHHHHHHHHHcCCeEEEEeCCc-ccCcHHHHh
Confidence 355557788889999999999999999975 345655443
No 420
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=20.90 E-value=4.5e+02 Score=21.31 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhCCCccEEeecCc-chH-HHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHH
Q psy9815 51 DALEAAIEEDLKKGKIPFYVNQAH-SSV-ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111 (119)
Q Consensus 51 ~~L~~~i~~~~~~g~~p~~v~~t~-gst-~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~ 111 (119)
..+|.++......|-.++++..-. |-- ..-+...|.+++.+.+...-.++++.++++++++
T Consensus 67 ~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~ 129 (383)
T COG0075 67 LAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD 129 (383)
T ss_pred HHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC
Confidence 456777877777665555554333 322 2455667779999999888899999999999854
No 421
>PRK05968 hypothetical protein; Provisional
Probab=20.90 E-value=4.2e+02 Score=20.90 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCccEEeecCcchHH----HHHHhcCceeEEeecCCCCCcCHHHHHHHH
Q psy9815 52 ALEAAIEEDLKKGKIPFYVNQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAI 108 (119)
Q Consensus 52 ~L~~~i~~~~~~g~~p~~v~~t~gst~----~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i 108 (119)
++.-++......|-.+++...+++.+. ..+...|++++.++.+ |.+.|++++
T Consensus 90 Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i 145 (389)
T PRK05968 90 AISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKAL 145 (389)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhc
Confidence 444444444455666667777777654 3455568777777643 566676665
No 422
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=20.86 E-value=3.9e+02 Score=20.39 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=29.4
Q ss_pred hCCCccEEeecCcchHHHHHHhcCceeEEeecC--CCCCcCHHHHHHHH
Q psy9815 62 KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAI 108 (119)
Q Consensus 62 ~~g~~p~~v~~t~gst~~~a~~~g~~~~~v~~d--~~~~m~~~~L~~~i 108 (119)
..|-.+++..-+.+.....+...|.+++.++.+ +++.++.+++++++
T Consensus 104 ~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~ 152 (357)
T PRK14809 104 DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY 152 (357)
T ss_pred CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh
Confidence 344433333334445556677788888888874 34677777776654
No 423
>PLN02727 NAD kinase
Probab=20.83 E-value=3.9e+02 Score=24.57 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=42.5
Q ss_pred cHHHHHhccCceeEEeecCCCcccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHh
Q psy9815 25 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLL 83 (119)
Q Consensus 25 S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~ 83 (119)
.++.||.-+|+.+.-+|+.....+..+.+++..+...+.--.|+.+-+-.|.=.+|+.+
T Consensus 301 ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamv 359 (986)
T PLN02727 301 AVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMV 359 (986)
T ss_pred HHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHH
Confidence 36678888999999999987788888888887665523223577777777774444443
No 424
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=20.70 E-value=57 Score=26.66 Aligned_cols=61 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred eeeecCCccccHHHHHhccCceeEEeecCCC-----cccCH-----HHHHHHHHHHHhCCCccEEeecCcch
Q psy9815 15 VGYCSDQAHSSVERAGLLGGVTIRGLPADDS-----YKLRG-----DALEAAIEEDLKKGKIPFYVNQAHSS 76 (119)
Q Consensus 15 vv~~s~~~H~S~~ka~~~~G~~~~~v~~d~~-----~~m~~-----~~L~~~i~~~~~~g~~p~~v~~t~gs 76 (119)
.|++....|-|+-.|+.+.|+..+-++...+ +.+++ +.+++++++....+. |-.++-|..|
T Consensus 108 ~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~-~~~vvlt~PT 178 (417)
T PF01276_consen 108 KVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKA-PRLVVLTSPT 178 (417)
T ss_dssp EEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHC-ESEEEEESS-
T ss_pred EEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccC-ceEEEEeCCC
No 425
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.54 E-value=4.2e+02 Score=20.66 Aligned_cols=37 Identities=11% Similarity=-0.066 Sum_probs=29.4
Q ss_pred hHHHHHHhcCceeEEeecCCCCCcCHHHHHHHHHHHHhC
Q psy9815 76 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK 114 (119)
Q Consensus 76 st~~~a~~~g~~~~~v~~d~~~~m~~~~L~~~i~~~~~~ 114 (119)
...+.|.-.|++...+...++ .+.+.|.+.|++..+.
T Consensus 53 ~k~k~~~~~Gi~~~~~~l~~~--~t~~el~~~I~~lN~D 89 (297)
T PRK14168 53 LKIKTAHRLGFHEIQDNQSVD--ITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHcCCEEEEEECCCC--CCHHHHHHHHHHHhCC
Confidence 667889999998887777664 6788899999887655
No 426
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=20.32 E-value=1.5e+02 Score=19.38 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=27.9
Q ss_pred CCcccCHHHHHHHHHHHHhCCCccEEeecCcch
Q psy9815 44 DSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSS 76 (119)
Q Consensus 44 ~~~~m~~~~L~~~i~~~~~~g~~p~~v~~t~gs 76 (119)
..+.||+..+.++.+.....|+..+.+..+|-+
T Consensus 49 ~~f~~d~~~~~~~~~~~~~~g~~~vG~~HSHP~ 81 (128)
T cd08070 49 RRFEIDPAEQLAAQREARERGLEVVGIYHSHPD 81 (128)
T ss_pred ceEEECHHHHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 358999999999888888888888899888865
No 427
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=20.28 E-value=1.5e+02 Score=18.75 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=24.8
Q ss_pred ccCHHHHHHHHHHHHhCCCccEEeecCcchHHHHHHh
Q psy9815 47 KLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLL 83 (119)
Q Consensus 47 ~m~~~~L~~~i~~~~~~g~~p~~v~~t~gst~~~a~~ 83 (119)
+-+++.|++.+.-.+..| |.+++-++|+...+-.
T Consensus 11 r~~pe~leRVLrvtrhRG---F~vcamnmt~~~da~~ 44 (86)
T COG3978 11 RFNPETLERVLRVTRHRG---FRVCAMNMTAAVDAGN 44 (86)
T ss_pred cCChHHHHHHHHHhhhcC---eEEEEeeccccccccc
Confidence 457899999988777777 5677778877764433
No 428
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.22 E-value=2.2e+02 Score=22.50 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=29.0
Q ss_pred CCccccHHHHHhccCceeEEeecCCCcccCHHHHHHHHHH
Q psy9815 20 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59 (119)
Q Consensus 20 ~~~H~S~~ka~~~~G~~~~~v~~d~~~~m~~~~L~~~i~~ 59 (119)
.-+.+.-..++...|..+..||.++ +..|.+.+.+++.+
T Consensus 106 ~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~ 144 (356)
T COG0079 106 EPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIRD 144 (356)
T ss_pred CCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhhhc
Confidence 3334444456888999999999888 88998887777665
No 429
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.04 E-value=1.2e+02 Score=16.36 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=11.8
Q ss_pred ecCCCCCcCHHHHHHHHHH
Q psy9815 92 PADDSYKLRGDALEAAIEE 110 (119)
Q Consensus 92 ~~d~~~~m~~~~L~~~i~~ 110 (119)
......+.+.++|++-+++
T Consensus 31 ~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 31 KIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred EeCCEEEEeHHHHHHHHHh
Confidence 3344466777777777664
No 430
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.01 E-value=2.5e+02 Score=20.74 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=9.8
Q ss_pred CcCHHHHHHHHHHHHhCC
Q psy9815 98 KLRGDALEAAIEEDLKKG 115 (119)
Q Consensus 98 ~m~~~~L~~~i~~~~~~G 115 (119)
..+...+.++|+....+|
T Consensus 85 ~~~~~~i~~Ai~~Ai~~g 102 (247)
T cd07491 85 SITPQSAAKAIEAAVEKK 102 (247)
T ss_pred ccCHHHHHHHHHHHHHCC
Confidence 345555666665555544
Done!