RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9815
(119 letters)
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 86.7 bits (215), Expect = 2e-21
Identities = 33/66 (50%), Positives = 44/66 (66%)
Query: 6 KDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 65
+ LV Y SDQAHSS+E+A L+ GV +R +P D++ K+RG LE AIEED + G
Sbjct: 134 AGKPSLGKLVAYTSDQAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGL 193
Query: 66 IPFYVN 71
IPF+V
Sbjct: 194 IPFFVC 199
Score = 65.5 bits (160), Expect = 1e-13
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 72 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
QAHSS+E+A L+ GV +R +P D++ K+RG LE AIEED + G IPF
Sbjct: 149 QAHSSIEKAALIAGVELREIPTDENGKMRGMDLEKAIEEDKENGLIPF 196
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 73.0 bits (180), Expect = 1e-16
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 9 DIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 68
I LV CSDQAH SVE+A V +R +P D+ ++ +ALEAAI+ED +G P
Sbjct: 91 RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPI 150
Query: 69 YVN 71
V
Sbjct: 151 MVV 153
Score = 57.6 bits (140), Expect = 6e-11
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 72 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
QAH SVE+A V +R +P D+ ++ +ALEAAI+ED +G P
Sbjct: 103 QAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPI 150
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 52.8 bits (126), Expect = 3e-09
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 10 IIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKG 64
++ LV Y SDQ HSS +A L+GG+ IR L D S Y + ++LE AI DL KG
Sbjct: 226 LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKG 285
Query: 65 KIPFYV 70
IPF++
Sbjct: 286 FIPFFI 291
Score = 40.8 bits (95), Expect = 5e-05
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 66 IPFYVNQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPF 119
+ + +Q HSS +A L+GG+ IR L D S Y + ++LE AI DL KG IPF
Sbjct: 231 VVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPF 289
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 49.1 bits (117), Expect = 5e-08
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 14 LVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPF 68
LV Y SDQ HS++++A + G+ R L D S Y L + L AI DL G IPF
Sbjct: 182 LVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPF 241
Query: 69 YV 70
++
Sbjct: 242 FL 243
Score = 39.1 bits (91), Expect = 2e-04
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 52 ALEAAIEEDLKK-GK------IPFYVNQAHSSVERAGLLGGV---TIRGLPADDS--YKL 99
L AA + L+K GK + + +Q HS++++A + G+ R L D S Y L
Sbjct: 162 VLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYAL 221
Query: 100 RGDALEAAIEEDLKKGKIPF 119
+ L AI DL G IPF
Sbjct: 222 APELLSEAISTDLSSGLIPF 241
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 39.7 bits (93), Expect = 1e-04
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 17 YCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDLKKGKI 66
CS+ AH S E+A G+ +R +P Y++ DALE AI+E+ G +
Sbjct: 161 VCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211
Score = 34.7 bits (80), Expect = 0.006
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 49 RGDALEAAIEEDLKKGKIP--FYVNQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALE 105
R + A+ E K G P AH S E+A G+ +R +P Y++ DALE
Sbjct: 140 RERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALE 199
Query: 106 AAIEEDLKKGKI 117
AI+E+ G +
Sbjct: 200 EAIDENTIGGVV 211
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 31.4 bits (72), Expect = 0.073
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 22 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
AH S ++A + GV +R P DD Y++ A+E I+++
Sbjct: 113 AHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151
Score = 31.4 bits (72), Expect = 0.073
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 73 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111
AH S ++A + GV +R P DD Y++ A+E I+++
Sbjct: 113 AHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLIDDN 151
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 28.9 bits (65), Expect = 0.55
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 67 PFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110
P+Y N E A + G +P DD+Y+L+ +A+E AI
Sbjct: 121 PYYFNH-----EMAITMAGCQPILVPTDDNYQLQPEAIEQAITP 159
Score = 26.6 bits (59), Expect = 3.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 41 PADDSYKLRGDALEAAIEE 59
P DD+Y+L+ +A+E AI
Sbjct: 141 PTDDNYQLQPEAIEQAITP 159
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 20 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59
+ AH S E+A + G+ +R P D+ Y + +E I++
Sbjct: 113 ESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 73 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110
AH S E+A + G+ +R P D+ Y + +E I++
Sbjct: 115 AHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLIDD 152
>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 26.6 bits (60), Expect = 2.7
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 39 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQAHSSVERAGLL-------GGVTIRGL 91
GLP + + KL + A + S E L GG TI L
Sbjct: 192 GLPREQARKLAAQTVLGAAKL-------------LLESGEHPAELRDNVTSPGGTTIAAL 238
Query: 92 PADDSYKLRG---DALEAAIE 109
+ LR +A++AA +
Sbjct: 239 RVLEEKGLRAAVIEAVQAAAK 259
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 26.6 bits (60), Expect = 2.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 31 LLGGVTIR-GLPADDSYKLRGDALEAAIEEDLK 62
L GGV + ++ +KL + LEAAI K
Sbjct: 134 LAGGVPVFVPTGEENGFKLTVEQLEAAITPKTK 166
Score = 26.6 bits (60), Expect = 2.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 82 LLGGVTIR-GLPADDSYKLRGDALEAAIEEDLK 113
L GGV + ++ +KL + LEAAI K
Sbjct: 134 LAGGVPVFVPTGEENGFKLTVEQLEAAITPKTK 166
>gnl|CDD|179220 PRK01099, rpoK, DNA-directed RNA polymerase subunit K;
Provisional.
Length = 62
Score = 25.3 bits (56), Expect = 3.7
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 51 DALEAAIEEDLKKGKIPFYV 70
D L+ A EE K+G +P V
Sbjct: 38 DPLDIAEEE-FKRGVLPITV 56
Score = 24.5 bits (54), Expect = 6.3
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 102 DALEAAIEEDLKKGKIPF 119
D L+ A EE K+G +P
Sbjct: 38 DPLDIAEEE-FKRGVLPI 54
>gnl|CDD|225372 COG2815, COG2815, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 303
Score = 26.2 bits (58), Expect = 4.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 6 KDSDIIANLVGYCSDQAHSSVERAGL 31
++ + +LVG D+A S+++ AGL
Sbjct: 159 PETITVPDLVGMTYDEASSNLKAAGL 184
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 26.2 bits (59), Expect = 5.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSY-KL--RGDALEAAIEEDLKKGKIPFYVNQAHS 75
AGL T++ L Y +L L ++E KK IP VN+ S
Sbjct: 307 AGL---ATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGS 353
>gnl|CDD|219071 pfam06525, SoxE, Sulfocyanin (SoxE). This family consists of
several archaeal sulfocyanin (or blue copper protein)
sequences from a number of Sulfolobus species.
Length = 195
Score = 26.0 bits (57), Expect = 5.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 64 GKIPFYVNQAHSSVERAGLLGGVTIRGL 91
GKI YV S+ G+ G + GL
Sbjct: 128 GKILLYVGATPSNYTTNGISSGQSASGL 155
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 26.0 bits (58), Expect = 5.8
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 17 YCSDQAHSSV-ERAGL--LGGVTIRGLPADDSYKLRGDALEAAIEED 60
C + AH E G LGG LP ++ KL + LEAAI
Sbjct: 75 ICGEPAHIYFDETGGHAELGGAQPVPLPGAEAGKLDLEDLEAAIRPV 121
>gnl|CDD|227046 COG4702, COG4702, Uncharacterized conserved protein [Function
unknown].
Length = 168
Score = 25.5 bits (56), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 26 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
V+ AG++G VT+ GLP + + L AL + DL
Sbjct: 126 VKGAGVIGVVTVSGLPQREDHNLVVRALADHLGIDL 161
Score = 25.5 bits (56), Expect = 6.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 77 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 112
V+ AG++G VT+ GLP + + L AL + DL
Sbjct: 126 VKGAGVIGVVTVSGLPQREDHNLVVRALADHLGIDL 161
>gnl|CDD|153037 pfam12603, DUF3770, Protein of unknown function (DUF3770). This
domain family is found in viruses, and is approximately
250 amino acids in length. The family is found in
association with pfam04196.
Length = 250
Score = 25.6 bits (56), Expect = 7.9
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 DSDIIANLVGYCSDQAHSSVERAGLLGGVTIR 38
D D IA ++ YC +A +E+ L V
Sbjct: 78 DKDYIAKIISYCLKEAQKKLEKNSYLNEVNDN 109
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 25.5 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 34 GVTIRGLPADDSYKLRGDALEAAIEEDLK 62
G ++ +P DD +L +ALE + E K
Sbjct: 113 GAKLKVVPVDDDGQLDLEALEKLLTERTK 141
Score = 25.5 bits (57), Expect = 8.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 85 GVTIRGLPADDSYKLRGDALEAAIEEDLK 113
G ++ +P DD +L +ALE + E K
Sbjct: 113 GAKLKVVPVDDDGQLDLEALEKLLTERTK 141
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 25.3 bits (56), Expect = 9.7
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 22 AHSSVERAGLLG----GVTIRGLPADDSYKLR 49
H +R+G++G G ++ +P ++R
Sbjct: 339 VHWPTDRSGVIGLPAPGTELKLVPNGGKLEVR 370
Score = 25.3 bits (56), Expect = 9.7
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 73 AHSSVERAGLLG----GVTIRGLPADDSYKLR 100
H +R+G++G G ++ +P ++R
Sbjct: 339 VHWPTDRSGVIGLPAPGTELKLVPNGGKLEVR 370
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.137 0.396
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,391,196
Number of extensions: 580139
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 48
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)