RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9815
(119 letters)
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 101 bits (254), Expect = 9e-27
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
PD +S + A LV Y SDQAHSSVE+AGL+ V ++ LP DD++ LRG+AL+ AIEED
Sbjct: 177 EPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDK 236
Query: 62 KKGKIPFYV 70
++G +P +V
Sbjct: 237 QRGLVPVFV 245
Score = 76.3 bits (188), Expect = 1e-17
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 42 ADDSYKLRGDALEAAIEEDLKKGKIPFYVN-QAHSSVERAGLLGGVTIRGLPADDSYKLR 100
A + L E +E ++ Y + QAHSSVE+AGL+ V ++ LP DD++ LR
Sbjct: 165 ARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLR 224
Query: 101 GDALEAAIEEDLKKGKIPF 119
G+AL+ AIEED ++G +P
Sbjct: 225 GEALQKAIEEDKQRGLVPV 243
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 99.8 bits (249), Expect = 5e-26
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 1 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
A P ++ LV Y SDQAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229
Query: 61 LKKGKIPFYV 70
G IPF+V
Sbjct: 230 KAAGLIPFFV 239
Score = 75.1 bits (185), Expect = 3e-17
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 4 DWKDSDIIANLVGYCSDQAHSSVERAG--LLGGVTIRGLP----ADDSYKLRGDALEAAI 57
DW + ++ G + G + L A R A +
Sbjct: 120 DW-----LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGL 174
Query: 58 EEDLKKGKIPFYVN-QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK 116
+ K+ Y + QAHSSVERAGL+GGV ++ +P+D + +R AL+ A+E D G
Sbjct: 175 TQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGL 234
Query: 117 IPF 119
IPF
Sbjct: 235 IPF 237
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 94.4 bits (235), Expect = 4e-24
Identities = 41/69 (59%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL 61
HP+W + I+ LVGYCSDQAHSSVERAGLLGGV +R + +++++RG ALE AIE+D+
Sbjct: 171 HPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDV 229
Query: 62 KKGKIPFYV 70
+G IPFY
Sbjct: 230 AEGLIPFYA 238
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 85.9 bits (213), Expect = 5e-21
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 9 DIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGK 65
+ LV + S+Q+H S+++AG G + + ++ K+ EA I E +KG
Sbjct: 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGY 244
Query: 66 IPFYVN 71
+PFYVN
Sbjct: 245 VPFYVN 250
Score = 66.6 bits (163), Expect = 3e-14
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
Q+H S+++AG G + + ++ K+ EA I E +KG +PF
Sbjct: 197 QSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPF 247
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 84.7 bits (210), Expect = 9e-21
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 1 AHPDWKDS--DIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEA 55
+PD K + L + S + H S+++ G+ ++R + AD+ K+ + LE
Sbjct: 189 RYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLER 248
Query: 56 AIEEDLKKGKIPFYVN 71
I +G +PF V+
Sbjct: 249 QIGMAEAEGAVPFLVS 264
Score = 65.5 bits (160), Expect = 6e-14
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 72 QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
+ H S+++ G+ ++R + AD+ K+ + LE I +G +PF
Sbjct: 211 ECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPF 261
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 83.5 bits (207), Expect = 3e-20
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 8 SDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKG 64
D L CS ++H +V+++ G+ + + A+ + L+ I + +G
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEG 256
Query: 65 KIPFYVN 71
IPF +
Sbjct: 257 LIPFAIV 263
Score = 65.4 bits (160), Expect = 7e-14
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 72 QAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
++H +V+++ G+ + + A+ + L+ I + +G IPF
Sbjct: 210 KSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPF 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-07
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 25/74 (33%)
Query: 52 ALEAAIEEDLK-KGKIPFYVNQA-HSSVERAGLLG---------GVTIRGLPADDSYKL- 99
+E A EDLK KG IP A HS LG V + + ++
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHS-------LGEYAALASLADV----MSIESLVEVV 1786
Query: 100 --RGDALEAAIEED 111
RG ++ A+ D
Sbjct: 1787 FYRGMTMQVAVPRD 1800
Score = 37.3 bits (86), Expect = 5e-04
Identities = 17/139 (12%), Positives = 30/139 (21%), Gaps = 63/139 (45%)
Query: 23 HSSVERAGLLG---------GVTIRGLPADDSYKL---RGDALEAAIEEDLKKGKIPFYV 70
HS LG V + + ++ RG ++ A+ D
Sbjct: 1762 HS-------LGEYAALASLADV----MSIESLVEVVFYRGMTMQVAVPRD---------- 1800
Query: 71 NQAHSSVERAGLLGGVTIRGLPADDS-------------------YKLRG---------D 102
S+ + G + Y +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 103 ALEAAIE--EDLKKGKIPF 119
AL+ +K KI
Sbjct: 1861 ALDTVTNVLNFIKLQKIDI 1879
Score = 33.5 bits (76), Expect = 0.011
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 35 VTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQA---HSSVERAGLLGGVTIRGL 91
V+ G P L G L L+K K P ++Q+ S ER + R L
Sbjct: 379 VS--GPPQS----LYGLNLT------LRKAKAPSGLDQSRIPFS--ERKLK---FSNRFL 421
Query: 92 PADDSY--KLRGDALEAAIEEDLKKGKIPF 119
P + L A + I +DL K + F
Sbjct: 422 PVASPFHSHLLVPASDL-INKDLVKNNVSF 450
Score = 32.3 bits (73), Expect = 0.031
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 46/143 (32%)
Query: 3 PDWKD-----SDIIANL--VGYCSDQA--HSSVERAGLLGGVTI-RGLPADDSYKL--RG 50
W+ I L +G +A ++S+ + L + G+P S L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP---SPMLSISN 343
Query: 51 ---DALEAAIEEDLKKGKIPFYVNQAHSSVERA---GLLGG-----VTIRGLPADDSYKL 99
+ ++ + + N H + L+ G V+ G P L
Sbjct: 344 LTQEQVQDYVNK----------TNS-HLPAGKQVEISLVNGAKNLVVS--GPPQS----L 386
Query: 100 RGDAL---EAAIEEDLKKGKIPF 119
G L +A L + +IPF
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPF 409
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 42.4 bits (99), Expect = 9e-06
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 17 YCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYVNQA 73
+H S +A G + + D + + +E AI+++++ G P ++
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTL 239
Score = 38.1 bits (88), Expect = 2e-04
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 52 ALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAI 108
L AA ++ I Y +H S +A G + + D + + +E AI
Sbjct: 166 CLSAARKKYGSNVVI--YPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAI 223
Query: 109 EEDLKKGKIP 118
+++++ G P
Sbjct: 224 KKEIELGNRP 233
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 37.6 bits (87), Expect = 3e-04
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 17 YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
AH++ ++A G+ + P D Y+ A+ AI +
Sbjct: 196 VVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239
Score = 34.1 bits (78), Expect = 0.005
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 73 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111
AH++ ++A G+ + P D Y+ A+ AI +
Sbjct: 201 AHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 36.2 bits (84), Expect = 0.001
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 17 YCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
AH S E+ + + P + Y + ++ A+E+
Sbjct: 127 IVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY 170
Score = 32.7 bits (75), Expect = 0.019
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 73 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 111
AH S E+ + + P + Y + ++ A+E+
Sbjct: 132 AHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDY 170
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 35.3 bits (81), Expect = 0.002
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 YCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 60
AH+ ++A G+ +R + D +Y++ ++ I ++
Sbjct: 162 IAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
Score = 31.0 bits (70), Expect = 0.077
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 71 NQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 111
AH+ ++A G+ +R + D +Y++ ++ I ++
Sbjct: 165 VTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 29.6 bits (67), Expect = 0.21
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 67 PFYVNQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGK 116
P+Y GV I + S +++ ALE A +E K+
Sbjct: 143 PYYP----GFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL 190
Score = 28.4 bits (64), Expect = 0.58
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 31 LLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGK 65
GV I + S +++ ALE A +E K+
Sbjct: 154 WRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL 190
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 28.8 bits (65), Expect = 0.38
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 67 PFYVNQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK 116
P+Y + GV + + + +++K+ A++ A E K
Sbjct: 140 PYYP----AFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI 187
Score = 27.3 bits (61), Expect = 1.4
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 31 LLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK 65
GV + + + +++K+ A++ A E K
Sbjct: 151 WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNI 187
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 28.6 bits (65), Expect = 0.41
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYK---LRGDALEAAIEEDLKKGKIPFYVNQAHS 75
AGL T++ L + Y ALE A E L + +P+ +N+ S
Sbjct: 313 AGL---ATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVES 359
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 28.7 bits (65), Expect = 0.41
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYKL---RGDALEAAIEEDLKKGKIPFYVNQAHS 75
A + I + DD G A+ + + + S
Sbjct: 313 AAI---AAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFS 359
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 28.7 bits (65), Expect = 0.43
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYK---LRGDALEAAIEEDLKKGKIPFYVNQAHS 75
AG + + + GD A + + + P S
Sbjct: 344 AGH---AALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGS 390
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 28.6 bits (65), Expect = 0.44
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYK---LRGDALEAAIEEDLKKGKIPFYVNQAHS 75
+G+ + L + Y+ G LE I E K I +N+
Sbjct: 312 SGI---ACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKG 358
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 28.2 bits (64), Expect = 0.59
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYKL---RGDALEAAIEEDLKKGKIPFYVNQAHS 75
AG+ T+ L +Y+ L + ++ Q
Sbjct: 309 AGI---KTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 28.2 bits (64), Expect = 0.65
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 29 AGLLGGVTIRGLPADDSYKL---RGDALEAAIEEDLKKGKIPFYVNQAHS 75
AG + + Y+ D+L + K+ IP VN
Sbjct: 310 AGF---ACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGG 356
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.1
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 27/54 (50%)
Query: 58 EEDLKK--GKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 109
++ LKK + Y A S PA L A++A +E
Sbjct: 19 KQALKKLQASLKLY---ADDSA--------------PA-----L---AIKATME 47
Score = 26.1 bits (56), Expect = 2.5
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 36 TIRGLPADDSYKLRGD------ALEAAIE 58
++ L S KL D A++A +E
Sbjct: 21 ALKKL--QASLKLYADDSAPALAIKATME 47
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I
4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Length = 95
Score = 26.3 bits (58), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 51 DALEAAIEEDLKKGKIPFYV 70
D + A EE K+G +P +
Sbjct: 60 DVISIAEEE-FKRGVLPITI 78
Score = 26.3 bits (58), Expect = 1.4
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 102 DALEAAIEEDLKKGKIPF 119
D + A EE K+G +P
Sbjct: 60 DVISIAEEE-FKRGVLPI 76
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 26.0 bits (58), Expect = 3.3
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 27 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 59
E GV++ D++ + + + + I++
Sbjct: 112 EINAKKHGVSVVFSYLDENMCIDYEDIISKIDD 144
Score = 26.0 bits (58), Expect = 3.3
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 78 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 110
E GV++ D++ + + + + I++
Sbjct: 112 EINAKKHGVSVVFSYLDENMCIDYEDIISKIDD 144
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 26.0 bits (58), Expect = 3.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)
Query: 67 PFYVNQAHSSVERAGLLGG--VTIRGLPADDSYKLRGDALEAAI 108
PF+ AG +R + ++L ALE A+
Sbjct: 110 PFFDVYL-PDAFLAG---AKARLVRLDLTPEGFRLDLSALEKAL 149
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 26.0 bits (58), Expect = 3.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 34 GVTIRGLPADDSYKLRGDALEAAIEE 59
G+ G+P + L A+ AA+ E
Sbjct: 130 GLEFVGVPLRADFTLDRGAMLAAMAE 155
Score = 26.0 bits (58), Expect = 3.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 85 GVTIRGLPADDSYKLRGDALEAAIEE 110
G+ G+P + L A+ AA+ E
Sbjct: 130 GLEFVGVPLRADFTLDRGAMLAAMAE 155
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 25.7 bits (57), Expect = 4.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 67 PFYVNQAHSSVERAGLLGG--VTIRGLPADDSYKLRGDALEAAI 108
PFY + + V AG VT+ +P + L DAL A+
Sbjct: 118 PFYDSYS-PVVAMAG---AHRVTVPLVPDGRGFALDADALRRAV 157
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 25.5 bits (57), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 49 RGDALEAAIEEDLKKGKIPFYVNQAHS 75
G LEA ++E LK+ +P VN+ S
Sbjct: 329 LGARLEAGLKEVLKEKGLPHTVNRVGS 355
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 25.6 bits (57), Expect = 4.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 34 GVTIRGLPADDSYKLRGDALEAAIEE 59
GV R +P D+++L + ++
Sbjct: 121 GVECRTVPTLDNWQLDLQGISDKLDG 146
Score = 25.6 bits (57), Expect = 4.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 85 GVTIRGLPADDSYKLRGDALEAAIEE 110
GV R +P D+++L + ++
Sbjct: 121 GVECRTVPTLDNWQLDLQGISDKLDG 146
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 24.9 bits (54), Expect = 5.7
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 51 DALEAAIEEDLKKGKIPFYV 70
D L A++E LK KIP +
Sbjct: 88 DPLLIAMKE-LKARKIPIII 106
Score = 24.9 bits (54), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 102 DALEAAIEEDLKKGKIPF 119
D L A++E LK KIP
Sbjct: 88 DPLLIAMKE-LKARKIPI 104
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 25.1 bits (56), Expect = 6.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 49 RGDALEAAIEEDLKKGKIPFYVNQAHS 75
+ + LEA + + +K IP ++N+A S
Sbjct: 329 KAEMLEAGLRKAAEKHGIPHHINRAGS 355
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 25.2 bits (56), Expect = 6.4
Identities = 2/27 (7%), Positives = 6/27 (22%)
Query: 34 GVTIRGLPADDSYKLRGDALEAAIEED 60
+ +++ D I
Sbjct: 137 HTEFIAVSRGADFRIDMDVALEEIRAK 163
Score = 25.2 bits (56), Expect = 6.4
Identities = 2/27 (7%), Positives = 6/27 (22%)
Query: 85 GVTIRGLPADDSYKLRGDALEAAIEED 111
+ +++ D I
Sbjct: 137 HTEFIAVSRGADFRIDMDVALEEIRAK 163
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 24.8 bits (55), Expect = 8.1
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 67 PFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI 108
P Y Q + + G V + + ++ + + L I
Sbjct: 113 PTYQ-QLYDIPKSLG--AEVDLWQIEEENGWLPDLEKLRQLI 151
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 24.3 bits (52), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 51 DALEAAIEEDLKKGKIPFYV 70
D L+ A++E L + KIP V
Sbjct: 106 DPLQIAMKE-LAQKKIPLLV 124
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 24.9 bits (55), Expect = 9.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 55 AAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIRGLPAD 94
AAI LK GK + + + + + G+P
Sbjct: 154 AAI---LKGGKESVNTFREMAKIVNDTIAQFQSETGVPVG 190
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 24.4 bits (54), Expect = 10.0
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 17/67 (25%)
Query: 51 DALEAAIEEDLKKGKIP-------FYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDA 103
A I++ ++GK+P Y+ LL + +
Sbjct: 84 RAE-KYIKDITRRGKVPIIAGGTGLYIQ---------SLLYNYAFEDESISEDKMKQVKL 133
Query: 104 LEAAIEE 110
+E
Sbjct: 134 KLKELEH 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.137 0.396
Gapped
Lambda K H
0.267 0.0841 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,003,785
Number of extensions: 119289
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 82
Length of query: 119
Length of database: 6,701,793
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,440,192
Effective search space: 168727296
Effective search space used: 168727296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.2 bits)