RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9815
         (119 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 65.6 bits (159), Expect = 2e-14
 Identities = 34/76 (44%), Positives = 47/76 (61%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 60
           A P      ++  LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D
Sbjct: 170 ASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229

Query: 61  LKKGKIPFYVNQAHSS 76
              G IPF+V     +
Sbjct: 230 KAAGLIPFFVVATLGT 245



 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 9   DIIANLVGYCSDQAHSSVERAG--LLGGVTIRGLPA-----DDSYKLRGDALEAAIEEDL 61
           D +  ++              G  + G  +   L A         +    A     +  +
Sbjct: 120 DWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAV 179

Query: 62  KKGKIPFYVNQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPF 119
            +  + +  +QAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF
Sbjct: 180 LEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237


>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
           {Escherichia coli [TaxId: 562]}
          Length = 450

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 7/72 (9%), Positives = 17/72 (23%), Gaps = 1/72 (1%)

Query: 1   AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE 59
                + +    +              +      V +R +P       +    +  A +E
Sbjct: 139 WRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE 198

Query: 60  DLKKGKIPFYVN 71
           +       F V 
Sbjct: 199 NTIGVVPTFGVT 210


>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 336

 Score = 24.8 bits (53), Expect = 3.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 39  GLPADDSYKLRGDALEAAIEEDLKKGKI 66
            L  DD Y     ALE AI    K+ K 
Sbjct: 286 ELSNDDRYIKASRALENAIYLVYKERKA 313



 Score = 24.8 bits (53), Expect = 3.7
 Identities = 11/28 (39%), Positives = 12/28 (42%)

Query: 90  GLPADDSYKLRGDALEAAIEEDLKKGKI 117
            L  DD Y     ALE AI    K+ K 
Sbjct: 286 ELSNDDRYIKASRALENAIYLVYKERKA 313


>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 124

 Score = 23.9 bits (52), Expect = 4.4
 Identities = 10/39 (25%), Positives = 12/39 (30%)

Query: 51 DALEAAIEEDLKKGKIPFYVNQAHSSVERAGLLGGVTIR 89
             E  I ED+ K  I             AG + G   R
Sbjct: 6  AVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAAR 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,811
Number of extensions: 20180
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.5 bits)