BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9817
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/231 (77%), Positives = 201/231 (87%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+KI +NRR+ DLIAAKCYFYHSRV EL N+L+ +RSFL++RLR ATLRNDFEGQAVLI
Sbjct: 159 MAKIVGQNRRSLDLIAAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLI 218
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY+LYDQADKLV KS FPE ASNNE ARF +YLGRIKA +LEYS AHK LVQ
Sbjct: 219 NCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQ 278
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AAVGFRQT QKL +VVELLLGDIP+R++FRQA LRR+L PYFQLTQAVRMG
Sbjct: 279 ALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGN 338
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
LQ+F EVL +G QFR D+TF LI+RLRHNVIKTAIRSIG +YSRI+P I
Sbjct: 339 LQRFGEVLENFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDI 389
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/231 (76%), Positives = 200/231 (86%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+K+ +NRR+ DLIAAK YFYHSRV EL N+L+ +RSFL++RLR ATLRNDFEGQAVLI
Sbjct: 155 MAKVVGQNRRSLDLIAAKSYFYHSRVAELNNDLESIRSFLHSRLRTATLRNDFEGQAVLI 214
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY+LYDQADKLV KS FPE ASNNE ARF +YLGRIKA +LEYS AHK LVQ
Sbjct: 215 NCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQ 274
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AAVGFRQT QKL +VVELLLGDIP+R++FRQA LRR+L PYFQLTQAVRMG
Sbjct: 275 ALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGN 334
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
LQ+F EVL +G QFR D+TF LI+RLRHNVIKTAIRSIG +YSRI+P I
Sbjct: 335 LQRFGEVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDI 385
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 359 bits (922), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 170/231 (73%), Positives = 201/231 (87%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M+KI+ +NRRT DLI AK YFY SRV EL N+L+ +RSFL+ARLR ATLRNDFEGQAVLI
Sbjct: 153 MAKISIQNRRTLDLIGAKSYFYFSRVAELKNSLEGIRSFLHARLRTATLRNDFEGQAVLI 212
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
NCLLRNYLHY LYDQADKLVKKS +PE+ASNNEWARF +YLGRIKA +LEYS AHK+LVQ
Sbjct: 213 NCLLRNYLHYALYDQADKLVKKSVYPESASNNEWARFLYYLGRIKAAKLEYSDAHKHLVQ 272
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRK+PQ AA+GFRQT QKL +VVELLLG+IP+R +FRQA LR++L YFQLTQAVR+G
Sbjct: 273 ALRKSPQHAAIGFRQTVQKLIIVVELLLGNIPERVVFRQAGLRQSLGAYFQLTQAVRLGN 332
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
L++F +V++ YG +F+ D+TF LI+RLRHNVIKTAIRSIG SYSRI+P I
Sbjct: 333 LKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRSIGLSYSRISPQDI 383
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 299 bits (765), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/231 (65%), Positives = 185/231 (80%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 188 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLL 247
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 248 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 307
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 308 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 367
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
L KFN+VL +G +F+TD T+ LI+RLRHNVIKT +R I SYSRI+ A I
Sbjct: 368 LAKFNQVLDQFGEKFQTDGTYTLIIRLRHNVIKTGVRMISLSYSRISLADI 418
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 296 bits (759), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/231 (64%), Positives = 184/231 (79%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 192 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLL 251
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 252 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 311
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 312 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 371
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
L KFN+VL +G +F+ D T+ LI+RLRHNVIKT +R I SYSRI+ A I
Sbjct: 372 LAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADI 422
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 296 bits (759), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/231 (64%), Positives = 184/231 (79%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M KI+++NRR DL+AAKCY+YH+RV+E + LD VRSFL+ARLR ATLR+D +GQA L+
Sbjct: 192 MQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDTDGQATLL 251
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHY+LYDQA+KLV KS FPE A+NNEWAR+ +Y GRIKA++LEYS A + +
Sbjct: 252 NLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTN 311
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
ALRKAPQ AVGF+QT KL +VVELLLG+IPDR FRQ L+R+L PYF LTQAVR G
Sbjct: 312 ALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGN 371
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
L KFN+VL +G +F+ D T+ LI+RLRHNVIKT +R I SYSRI+ A I
Sbjct: 372 LAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADI 422
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 239 bits (610), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 165/227 (72%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
M + S R T +++K +FY+S +E+TNNL +VRS L + LR ATLR++ EGQA +I
Sbjct: 160 METVQSNTRITLYPLSSKIFFYYSLSYEMTNNLHEVRSTLLSALRTATLRHNDEGQATII 219
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYL YNL++QADKL+ + FPE+AS+N++AR+ +Y GRI+A++LEY+ + K L Q
Sbjct: 220 NLLLRNYLEYNLFEQADKLLANTQFPESASSNQFARYFYYQGRIRAIQLEYAESFKFLTQ 279
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A+RKAPQ A GFR+T KL +V+LL+G+IP+R F Q L+ AL PYF LT+AVR+G+
Sbjct: 280 AIRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPERNTFSQKQLKIALKPYFHLTEAVRVGD 339
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
L FN+ L + F++D TF L+ RLR NVIK ++ + +YSRI+
Sbjct: 340 LGSFNQALEQNSDIFKSDQTFTLVQRLRSNVIKAGLKKLNTAYSRIS 386
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 163/228 (71%), Gaps = 1/228 (0%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ S +RRT D IAAK YFY+ E N + R+ L + R A+LR+D E QA+++
Sbjct: 154 IARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVECRNTLLSVHRTASLRHDSETQAMVL 213
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
LLRNY+ +NLYDQAD+LV K++F NASNN R+ +YLGRI+A++L+Y+TAH++LV
Sbjct: 214 TLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVS 273
Query: 121 ALRKAPQTA-AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMG 179
A+RKAP T AV F + KL +VV+LL+G+IP+R+IFRQ L + L PY +++QAVR+G
Sbjct: 274 AIRKAPNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIG 333
Query: 180 ELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
+L F + L+ Y +FR D + LI RLRH VIKT +R I SYSRI+
Sbjct: 334 DLCAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRIS 381
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 216 bits (551), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 169/227 (74%), Gaps = 1/227 (0%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT D++A++ YFY+S +ELT +L ++R +L A RIATLR+D GQ L+
Sbjct: 146 IARLKTVNRRTVDVLASRLYFYYSLCYELTGDLAEIRGYLLALHRIATLRHDELGQETLL 205
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN +++R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 206 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQ 265
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAPQ AA+GFR K A++V LLLG+IP+R +F Q + +AL PYF+LT AVR+G+
Sbjct: 266 AARKAPQ-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGD 324
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
L+ F +V + + F +D T LI+RLRHNVI+T +R+I SYSRI+
Sbjct: 325 LELFRKVAEKFSSTFSSDGTNNLIVRLRHNVIRTGLRNISISYSRIS 371
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 150/226 (66%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++ I + +RRT D +AAK ++ ++E L + FLN+RLR ATLRN E QAVLI
Sbjct: 160 LTSIYNFDRRTLDGLAAKTLYFLCVIYEREGRLFDHQGFLNSRLRTATLRNFSESQAVLI 219
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
LLR YL Y A LV K AFP+NASNN+ AR+ +Y GRIKA++L+Y++A +Q
Sbjct: 220 CWLLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQGRIKALQLDYNSAAGYFLQ 279
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAPQ A+GF+Q QK VV+ LL G+IPDR +FRQ + R+ L+ Y L++ VR G+
Sbjct: 280 AQRKAPQEGAIGFKQAVQKWVVVIGLLQGEIPDRSVFRQPIYRKCLAHYLDLSRGVRDGD 339
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRI 226
+ +FN L + QF D T LI+RLR NVIKTAI+ I +YSRI
Sbjct: 340 VARFNHNLEQFKTQFEADDTLTLIVRLRQNVIKTAIKQISLAYSRI 385
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 210 bits (535), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 117/227 (51%), Positives = 163/227 (71%), Gaps = 1/227 (0%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ S NRRT D+IA+K YFY+S +ELTN+L ++RS L A ATLR+D GQ L+
Sbjct: 145 IARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAEIRSTLLALHHSATLRHDELGQETLL 204
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 205 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 264
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP A++GFR K A++V LLLG+IP+R IF Q + + L PYF+LT AVR+G+
Sbjct: 265 AARKAP-VASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGD 323
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
L+ F ++ + F D T LI+RLRHNVI+T +R+I SYSRI+
Sbjct: 324 LELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNISISYSRIS 370
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 162/227 (71%), Gaps = 1/227 (0%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT +++A++ YFY+S +ELT +L ++R L A RIATLR+D GQ L+
Sbjct: 147 IARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLL 206
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++ +Q
Sbjct: 207 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQ 266
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP AA+GFR K AV+V LLLG+IP+R +F Q + +AL PYF LT AVR+G+
Sbjct: 267 AARKAP-VAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGD 325
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
L+ F V + + F D T LI+RLRHNVI+T +R+I SYSRI+
Sbjct: 326 LELFRXVADKFASTFTADRTHNLIVRLRHNVIRTGLRNISISYSRIS 372
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 201 bits (510), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 161/227 (70%), Gaps = 1/227 (0%)
Query: 1 MSKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLI 60
++++ + NRRT D+IA++ YFY+S +E T +L ++R L A ATLR+D GQ L+
Sbjct: 146 IARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAEIRGTLLALHHSATLRHDELGQETLL 205
Query: 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
N LLRNYLHYNLYDQA+KL K+ E SN ++ R+ FYLG+I+ ++LEY+ A ++L+Q
Sbjct: 206 NLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQ 265
Query: 121 ALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGE 180
A RKAP AA+GFR K A++V LLLG+IP+R IF Q + +AL PYF+LT AVR+G+
Sbjct: 266 AARKAP-IAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGD 324
Query: 181 LQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
L+ F V + + F D T LI+RLRHNVI+T +R+I SYSRI+
Sbjct: 325 LELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNISISYSRIS 371
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 167 bits (423), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 149/232 (64%), Gaps = 12/232 (5%)
Query: 8 NRRTSDLIAAKCYFYHSRVHEL---------TNNLDKV-RSFLNARLRIATLRNDFEGQA 57
N R+ +LI AK +FY HE ++N + + RS + L+IA+L++D E +A
Sbjct: 172 NLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKA 231
Query: 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPE-NASNNEWARFHFYLGRIKAVRLEYSTAHK 116
+LIN +LR++L+ D A + K +P + S++ AR+ FYL +I A++L+YSTA++
Sbjct: 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANE 291
Query: 117 NLVQALRKAPQTA-AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQA 175
++ A+RKAP + ++GF Q + KL ++LL+GDIP+ F Q+ ++++L PY+ LT+A
Sbjct: 292 YIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKA 351
Query: 176 VRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRIT 227
V++G+L+KF +T Y D T++L +RLR NVIKT IR I +Y +I+
Sbjct: 352 VKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKIS 403
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 22/178 (12%)
Query: 57 AVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHK 116
+V+ NCLL + ++ + D + + +E AR+++Y G I V +Y +A K
Sbjct: 136 SVITNCLLDMLIGNKIFQRIDNSI--------VTTSEQARYNYYNGIIFMVEGDYESALK 187
Query: 117 NL-VQALRKAPQTAAVGFRQTTQKLAVVVELLLGD--IPDRQIFRQAVLRRALSPYFQLT 173
+ + +G +K ++ LL D IP + +L YF+L
Sbjct: 188 CFHTCVILSTNRDLVLG----AEKRVILCMLLSSDYSIP-------YPCKPSLRIYFKLA 236
Query: 174 QAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231
AV+ +++KF E L + ++ + + + RL NVI+ IR I YSRI+ I
Sbjct: 237 SAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDI 294
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 78 KLVKKSAFP--ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQ 135
K ++ FP E+ N+ + F+ GR+ +Y A + L+ A K P ++ ++
Sbjct: 224 KTMESPGFPTLESYPLNQVITYRFFNGRLSVFNGQYKKAQEELLYAFNKCPND-SIKNKR 282
Query: 136 TTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQF 195
V ++L P + + + L+ + + Q+++ G +++FNE L+T+ N F
Sbjct: 283 LILLFLVPMQLEQCKFPKKSLLE----KFKLTQFIDIVQSIKSGNIKQFNECLSTHQNFF 338
Query: 196 RTDYTFKLILRLR 208
+ + ++ +L+
Sbjct: 339 ISKGIYLILEKLK 351
>sp|Q59599|CARB_NEIGO Carbamoyl-phosphate synthase large chain OS=Neisseria gonorrhoeae
GN=carB PE=3 SV=2
Length = 1071
Score = 34.7 bits (78), Expect = 0.64, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 110 EYSTAHKNLVQALRKAPQ-TAAVGFRQTTQKLAVVVELLLGD---IPDRQIFRQAVLRRA 165
+Y T H +VQA+ K P+ +G ++A+VV + D + D I RQ+ L++
Sbjct: 973 QYLTEHGLIVQAINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQR 1032
Query: 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194
+ Y M E K + L Y Q
Sbjct: 1033 VPQYTTTAGGEAMSEGAKSRDYLGVYSVQ 1061
>sp|P55910|LCTP_BACSU L-lactate permease OS=Bacillus subtilis (strain 168) GN=lctP PE=2
SV=3
Length = 541
Score = 34.3 bits (77), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 149 GDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKL 203
GD +++ +R A + +A SP++ LT A+ + L F + G +++ FK+
Sbjct: 279 GDAGEKKAYRAADIAKAWSPFYILTAAITIWSLPAFKALFQEGGLLYQSTLLFKM 333
>sp|Q9ZNU6|DET1_SOLLC Light-mediated development protein DET1 OS=Solanum lycopersicum
GN=DET1 PE=1 SV=1
Length = 523
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 66/143 (46%), Gaps = 29/143 (20%)
Query: 84 AFPENASNNEWARF-----HFYLGRIKAVRLEYSTAHKNLVQALR--KAPQTAAVGFRQT 136
AF +N+++ + F HF++ ++ + + ++H N + AL + + A F Q
Sbjct: 354 AFYQNSADELYFLFELFSDHFHVSSKSSLHMNFMSSHSNNIHALEQLRCTKNKATNFSQF 413
Query: 137 TQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFR 196
+K ++ +P + ++ SPYF + L +F+E L + ++ R
Sbjct: 414 VKK-------MMASLP------CSCQSQSPSPYFDQS-------LFRFDEKLISAIDRHR 453
Query: 197 --TDYTFKLILRLRHNVIKTAIR 217
TD+ K I R + N++K ++
Sbjct: 454 QSTDHPIKFISRRQPNILKFKMK 476
>sp|Q9JXW8|CARB_NEIMB Carbamoyl-phosphate synthase large chain OS=Neisseria meningitidis
serogroup B (strain MC58) GN=carB PE=3 SV=1
Length = 1071
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 EYSTAHKNLVQALRKAPQ-TAAVGFRQTTQKLAVVVELLLGD---IPDRQIFRQAVLRRA 165
+Y T H +VQ + K P+ +G ++A+VV + D + D I RQ+ L++
Sbjct: 973 QYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQR 1032
Query: 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194
+ Y M E K + L Y Q
Sbjct: 1033 VPQYTTTAGGEAMSEGAKSRDHLGVYSVQ 1061
>sp|Q9JW02|CARB_NEIMA Carbamoyl-phosphate synthase large chain OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=carB PE=3
SV=1
Length = 1071
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 EYSTAHKNLVQALRKAPQ-TAAVGFRQTTQKLAVVVELLLGD---IPDRQIFRQAVLRRA 165
+Y T H +VQ + K P+ +G ++A+VV + D + D I RQ+ L++
Sbjct: 973 QYLTEHGLIVQTINKVPEGRPHIGDALKNGEIALVVNTVSSDPQSVSDSHIIRQSALQQR 1032
Query: 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194
+ Y M E K + L Y Q
Sbjct: 1033 VPQYTTTAGGEAMSEGAKSRDHLGVYSVQ 1061
>sp|A0QUP1|DNLI_MYCS2 Probable DNA ligase OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=lig PE=3 SV=1
Length = 509
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 101 LGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQA 160
L + A E + + LV+ R A A TQ +AV+V L G++P RQI
Sbjct: 2 LADVAAASTEVAASSARLVKIERIATLLARSAAEDDTQAVAVIVSWLSGELPQRQIGVGW 61
Query: 161 VLRRALSP 168
R L P
Sbjct: 62 AALRTLPP 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,846,188
Number of Sequences: 539616
Number of extensions: 2710383
Number of successful extensions: 7837
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7809
Number of HSP's gapped (non-prelim): 26
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)