Query psy9817
Match_columns 231
No_of_seqs 159 out of 448
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:28:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2581|consensus 100.0 3.6E-66 7.8E-71 466.3 17.5 230 2-231 154-383 (493)
2 KOG2688|consensus 100.0 2.9E-31 6.3E-36 241.9 13.7 193 33-230 132-338 (394)
3 COG5600 Transcription-associat 100.0 5.7E-29 1.2E-33 223.5 15.7 166 53-222 173-345 (413)
4 KOG2582|consensus 99.6 7.6E-15 1.6E-19 132.3 12.7 176 55-231 138-323 (422)
5 PF01399 PCI: PCI domain; Int 98.6 7.5E-08 1.6E-12 71.9 4.3 64 168-231 2-66 (105)
6 KOG1464|consensus 97.8 5.6E-05 1.2E-09 67.3 6.7 118 98-217 234-360 (440)
7 PF14938 SNAP: Soluble NSF att 97.3 0.014 3E-07 51.7 14.9 118 92-209 152-279 (282)
8 KOG1463|consensus 97.1 0.0027 5.8E-08 58.0 9.1 140 90-229 204-349 (411)
9 PF07719 TPR_2: Tetratricopept 97.0 0.0021 4.5E-08 37.8 4.6 33 95-127 1-33 (34)
10 PF13371 TPR_9: Tetratricopept 96.9 0.0035 7.5E-08 43.3 5.7 61 64-128 2-62 (73)
11 PF13432 TPR_16: Tetratricopep 96.8 0.0045 9.8E-08 42.0 5.7 61 64-128 4-64 (65)
12 PF10255 Paf67: RNA polymerase 96.6 0.09 2E-06 49.3 15.1 164 60-229 125-325 (404)
13 TIGR02552 LcrH_SycD type III s 96.3 0.13 2.9E-06 39.2 11.8 98 21-128 21-118 (135)
14 PRK15359 type III secretion sy 96.2 0.088 1.9E-06 41.9 10.9 99 20-128 27-125 (144)
15 PF00515 TPR_1: Tetratricopept 96.0 0.021 4.5E-07 33.7 4.7 32 96-127 2-33 (34)
16 PF13414 TPR_11: TPR repeat; P 95.8 0.029 6.3E-07 38.2 5.5 63 60-126 6-69 (69)
17 PF13424 TPR_12: Tetratricopep 95.6 0.055 1.2E-06 37.8 6.5 66 57-124 5-75 (78)
18 cd00189 TPR Tetratricopeptide 95.5 0.2 4.3E-06 33.5 9.0 61 60-126 37-99 (100)
19 PF12895 Apc3: Anaphase-promot 95.3 0.03 6.6E-07 40.0 4.4 54 63-121 31-84 (84)
20 TIGR02795 tol_pal_ybgF tol-pal 95.2 0.49 1.1E-05 34.7 10.8 106 17-128 2-109 (119)
21 KOG2908|consensus 95.1 2.7 5.8E-05 38.8 19.8 138 54-193 112-261 (380)
22 TIGR03302 OM_YfiO outer membra 94.5 1.3 2.8E-05 37.2 13.0 112 11-128 27-148 (235)
23 PF13181 TPR_8: Tetratricopept 94.5 0.077 1.7E-06 31.0 3.9 31 96-126 2-32 (34)
24 PF04733 Coatomer_E: Coatomer 94.5 0.27 5.9E-06 44.0 9.0 122 60-191 134-289 (290)
25 PF09976 TPR_21: Tetratricopep 94.3 1.2 2.5E-05 35.1 11.6 99 15-122 46-145 (145)
26 PRK10370 formate-dependent nit 94.2 0.76 1.6E-05 38.6 10.7 103 17-128 73-177 (198)
27 PRK02603 photosystem I assembl 94.2 1.3 2.7E-05 35.9 11.7 104 15-127 33-152 (172)
28 TIGR00990 3a0801s09 mitochondr 94.0 4.8 0.0001 39.3 17.4 59 63-127 439-499 (615)
29 COG5159 RPN6 26S proteasome re 93.5 1.4 3E-05 40.0 11.5 163 64-229 172-347 (421)
30 PRK11189 lipoprotein NlpI; Pro 93.5 0.91 2E-05 40.3 10.4 100 17-128 64-165 (296)
31 TIGR02521 type_IV_pilW type IV 93.3 3.4 7.5E-05 33.0 15.6 161 16-193 30-197 (234)
32 TIGR03302 OM_YfiO outer membra 93.3 1.8 3.9E-05 36.3 11.6 64 62-128 38-103 (235)
33 TIGR02917 PEP_TPR_lipo putativ 93.2 5.7 0.00012 38.8 16.5 105 14-128 122-226 (899)
34 PF13414 TPR_11: TPR repeat; P 93.0 0.49 1.1E-05 31.9 6.3 35 94-128 2-36 (69)
35 PRK11788 tetratricopeptide rep 92.9 6.7 0.00014 35.2 16.3 58 63-126 186-245 (389)
36 KOG4162|consensus 92.7 0.69 1.5E-05 46.4 9.1 107 11-128 678-787 (799)
37 TIGR02917 PEP_TPR_lipo putativ 92.4 9.8 0.00021 37.1 16.9 105 15-128 54-158 (899)
38 cd00189 TPR Tetratricopeptide 92.4 1.3 2.7E-05 29.3 7.9 60 63-128 6-67 (100)
39 KOG1497|consensus 92.3 9.2 0.0002 35.2 15.5 207 16-229 102-321 (399)
40 PF13174 TPR_6: Tetratricopept 92.2 0.33 7.2E-06 27.8 4.0 30 98-127 3-32 (33)
41 PF14938 SNAP: Soluble NSF att 91.9 5.2 0.00011 35.2 13.1 193 16-209 34-243 (282)
42 PF14853 Fis1_TPR_C: Fis1 C-te 91.8 0.81 1.8E-05 30.6 5.9 33 96-128 2-34 (53)
43 TIGR02521 type_IV_pilW type IV 91.6 5.9 0.00013 31.6 16.0 103 17-128 65-168 (234)
44 CHL00033 ycf3 photosystem I as 91.4 4.1 8.9E-05 32.6 11.0 102 17-121 35-139 (168)
45 PF13424 TPR_12: Tetratricopep 91.4 1.8 3.9E-05 29.9 7.8 69 15-83 3-72 (78)
46 KOG1076|consensus 90.8 20 0.00043 36.2 16.9 207 13-229 482-722 (843)
47 CHL00033 ycf3 photosystem I as 90.8 4.6 0.0001 32.3 10.7 76 50-128 28-105 (168)
48 PRK15174 Vi polysaccharide exp 90.8 3.4 7.3E-05 41.1 11.7 112 17-140 284-397 (656)
49 PF03399 SAC3_GANP: SAC3/GANP/ 90.5 0.53 1.1E-05 39.2 5.1 116 108-230 72-197 (204)
50 PF13428 TPR_14: Tetratricopep 90.3 0.52 1.1E-05 29.6 3.8 31 98-128 4-34 (44)
51 TIGR00990 3a0801s09 mitochondr 90.1 2.8 6.1E-05 40.9 10.5 102 14-127 328-431 (615)
52 PF14559 TPR_19: Tetratricopep 89.9 0.21 4.6E-06 33.6 1.8 55 68-128 2-58 (68)
53 PRK11906 transcriptional regul 89.1 8.2 0.00018 36.9 12.2 124 8-142 286-415 (458)
54 smart00028 TPR Tetratricopepti 88.8 0.83 1.8E-05 24.3 3.6 31 97-127 3-33 (34)
55 PRK10049 pgaA outer membrane p 88.7 29 0.00063 35.1 17.6 138 62-208 315-470 (765)
56 PRK11788 tetratricopeptide rep 88.4 18 0.0004 32.3 17.2 33 95-127 180-212 (389)
57 PRK15363 pathogenicity island 88.2 1.8 4E-05 35.5 6.4 79 66-154 44-122 (157)
58 KOG1498|consensus 87.9 11 0.00024 35.5 11.9 205 22-229 136-357 (439)
59 PF13429 TPR_15: Tetratricopep 87.5 6.3 0.00014 34.1 9.9 101 16-128 145-247 (280)
60 PLN03088 SGT1, suppressor of 87.2 9.8 0.00021 34.9 11.4 64 61-128 40-103 (356)
61 TIGR02552 LcrH_SycD type III s 87.1 5.2 0.00011 30.2 8.2 63 60-128 20-84 (135)
62 PRK12370 invasion protein regu 87.0 6 0.00013 38.3 10.4 26 97-122 443-468 (553)
63 PRK12370 invasion protein regu 86.9 31 0.00067 33.4 15.6 116 63-191 344-467 (553)
64 PRK02603 photosystem I assembl 86.6 11 0.00024 30.3 10.3 74 52-128 30-105 (172)
65 PRK11189 lipoprotein NlpI; Pro 86.0 4.5 9.8E-05 35.8 8.3 73 52-128 59-131 (296)
66 PF10075 PCI_Csn8: COP9 signal 85.5 1.9 4.1E-05 34.2 5.1 82 146-230 15-102 (143)
67 PRK15359 type III secretion sy 84.9 4.9 0.00011 31.7 7.2 62 63-128 30-91 (144)
68 PRK10049 pgaA outer membrane p 83.7 19 0.00041 36.4 12.5 100 18-129 360-461 (765)
69 PF13176 TPR_7: Tetratricopept 83.4 2 4.3E-05 25.7 3.4 27 99-125 3-29 (36)
70 PF07729 FCD: FCD domain; Int 83.1 15 0.00033 26.6 9.0 74 111-191 48-122 (125)
71 cd05804 StaR_like StaR_like; a 82.6 18 0.00038 32.1 10.7 99 20-126 117-217 (355)
72 TIGR02795 tol_pal_ybgF tol-pal 82.4 4.3 9.3E-05 29.5 5.7 63 63-128 8-72 (119)
73 PF02064 MAS20: MAS20 protein 82.4 2.9 6.4E-05 32.8 4.8 41 100-143 68-108 (121)
74 PF13429 TPR_15: Tetratricopep 81.7 3.5 7.6E-05 35.8 5.7 68 59-128 112-179 (280)
75 KOG2076|consensus 81.6 70 0.0015 33.1 15.6 102 13-128 169-274 (895)
76 PRK11447 cellulose synthase su 80.4 15 0.00033 38.9 10.8 106 17-128 303-418 (1157)
77 KOG2300|consensus 80.1 62 0.0013 31.6 14.7 144 55-201 402-566 (629)
78 PF09295 ChAPs: ChAPs (Chs5p-A 80.0 16 0.00035 34.3 9.7 63 57-127 234-296 (395)
79 TIGR00540 hemY_coli hemY prote 79.9 24 0.00052 32.7 10.9 34 95-128 335-370 (409)
80 PRK14574 hmsH outer membrane p 79.5 37 0.0008 35.0 12.8 135 61-206 371-525 (822)
81 PRK09782 bacteriophage N4 rece 79.4 18 0.00039 38.0 10.7 59 63-127 615-675 (987)
82 PRK15174 Vi polysaccharide exp 79.2 17 0.00037 36.1 10.2 64 59-128 286-351 (656)
83 PRK10370 formate-dependent nit 78.2 9.8 0.00021 31.8 7.1 69 60-128 19-106 (198)
84 PLN03081 pentatricopeptide (PP 77.7 48 0.001 32.9 12.9 59 59-124 261-319 (697)
85 PLN03081 pentatricopeptide (PP 77.2 46 0.001 33.0 12.6 63 57-126 158-220 (697)
86 PF09976 TPR_21: Tetratricopep 75.4 36 0.00078 26.5 9.3 53 98-153 51-103 (145)
87 KOG1127|consensus 75.0 44 0.00095 35.3 11.6 134 55-201 524-663 (1238)
88 PRK10803 tol-pal system protei 74.4 25 0.00054 31.0 8.8 64 62-128 148-213 (263)
89 PF13374 TPR_10: Tetratricopep 74.4 7.4 0.00016 22.9 4.0 29 97-125 4-32 (42)
90 PRK14574 hmsH outer membrane p 74.3 96 0.0021 32.0 14.1 72 50-128 62-135 (822)
91 PRK10803 tol-pal system protei 74.0 62 0.0014 28.5 12.9 106 16-128 141-250 (263)
92 KOG2002|consensus 73.9 1.2E+02 0.0026 31.8 15.3 70 58-128 271-340 (1018)
93 PF08898 DUF1843: Domain of un 73.8 13 0.00027 25.0 5.1 43 168-210 2-46 (53)
94 PRK11447 cellulose synthase su 73.8 69 0.0015 34.0 13.4 59 63-127 609-669 (1157)
95 PLN03077 Protein ECB2; Provisi 73.5 56 0.0012 33.3 12.3 60 58-124 223-282 (857)
96 PLN03098 LPA1 LOW PSII ACCUMUL 72.9 25 0.00054 33.7 8.9 38 91-128 71-108 (453)
97 PF13432 TPR_16: Tetratricopep 72.7 4.4 9.5E-05 26.8 2.9 49 99-153 1-49 (65)
98 PLN03088 SGT1, suppressor of 72.4 14 0.00031 33.8 7.1 58 65-128 10-69 (356)
99 KOG1840|consensus 72.3 37 0.00081 33.0 10.1 110 14-123 364-478 (508)
100 KOG0547|consensus 72.2 35 0.00077 33.2 9.7 122 12-145 389-514 (606)
101 KOG1840|consensus 70.7 1E+02 0.0022 30.1 12.6 142 13-154 195-344 (508)
102 PRK09782 bacteriophage N4 rece 70.6 29 0.00062 36.5 9.5 57 93-155 42-98 (987)
103 PF10602 RPN7: 26S proteasome 69.8 61 0.0013 26.7 9.7 64 62-125 78-143 (177)
104 KOG0543|consensus 69.2 23 0.00049 33.3 7.6 65 61-129 261-325 (397)
105 PRK10866 outer membrane biogen 69.1 76 0.0016 27.4 13.8 62 64-128 39-102 (243)
106 KOG1173|consensus 69.0 22 0.00049 34.9 7.7 125 9-153 338-466 (611)
107 cd05804 StaR_like StaR_like; a 68.9 33 0.00072 30.3 8.6 63 59-127 116-180 (355)
108 PRK15363 pathogenicity island 68.7 16 0.00035 30.0 5.9 103 31-143 49-152 (157)
109 PF07721 TPR_4: Tetratricopept 67.7 7.2 0.00016 21.6 2.6 23 97-119 3-25 (26)
110 KOG4234|consensus 67.7 19 0.0004 31.4 6.2 97 100-200 100-200 (271)
111 COG2956 Predicted N-acetylgluc 67.0 95 0.002 28.9 10.9 138 60-205 110-289 (389)
112 PRK10153 DNA-binding transcrip 64.4 58 0.0013 31.6 9.7 57 67-128 430-486 (517)
113 PF10300 DUF3808: Protein of u 63.6 25 0.00055 33.6 7.0 77 70-154 246-324 (468)
114 PLN03077 Protein ECB2; Provisi 63.0 1.1E+02 0.0024 31.1 12.0 61 57-124 323-383 (857)
115 PLN03098 LPA1 LOW PSII ACCUMUL 61.9 20 0.00042 34.4 5.8 63 59-124 77-141 (453)
116 KOG1156|consensus 61.3 42 0.00092 33.6 8.1 38 91-128 367-404 (700)
117 KOG2076|consensus 61.3 39 0.00084 34.9 8.0 63 62-128 419-482 (895)
118 PF07579 DUF1548: Domain of Un 60.6 53 0.0011 26.3 7.1 80 22-101 50-131 (135)
119 KOG4626|consensus 60.6 49 0.0011 33.4 8.3 63 59-127 356-420 (966)
120 smart00668 CTLH C-terminal to 59.7 37 0.00079 21.9 5.4 31 170-200 6-36 (58)
121 KOG2002|consensus 59.4 1.9E+02 0.0041 30.5 12.5 115 30-154 659-775 (1018)
122 TIGR00985 3a0801s04tom mitocho 59.1 19 0.0004 29.3 4.5 40 101-143 96-136 (148)
123 PF12895 Apc3: Anaphase-promot 58.6 9 0.0002 26.9 2.4 47 70-120 2-50 (84)
124 KOG3364|consensus 58.4 30 0.00066 28.0 5.5 48 92-139 68-116 (149)
125 PF12688 TPR_5: Tetratrico pep 57.7 87 0.0019 24.2 11.9 114 17-140 1-116 (120)
126 KOG3081|consensus 56.5 61 0.0013 29.2 7.6 80 102-191 214-295 (299)
127 PRK10747 putative protoheme IX 56.1 1.4E+02 0.0031 27.5 10.5 36 93-128 326-361 (398)
128 PF12854 PPR_1: PPR repeat 55.5 22 0.00047 21.0 3.3 26 58-83 8-33 (34)
129 PRK14720 transcript cleavage f 55.3 42 0.00091 35.0 7.3 119 46-190 10-141 (906)
130 PRK15331 chaperone protein Sic 55.3 35 0.00075 28.3 5.6 42 98-142 108-149 (165)
131 PF14559 TPR_19: Tetratricopep 54.5 38 0.00083 22.1 4.9 23 106-128 2-24 (68)
132 PF12569 NARP1: NMDA receptor- 53.0 69 0.0015 31.2 8.1 65 59-127 196-260 (517)
133 cd02682 MIT_AAA_Arch MIT: doma 52.9 45 0.00097 23.9 5.1 51 102-152 20-71 (75)
134 PF04190 DUF410: Protein of un 52.5 1.3E+02 0.0028 26.3 9.2 39 172-210 198-237 (260)
135 smart00088 PINT motif in prote 52.2 9.2 0.0002 27.2 1.6 28 204-231 3-30 (88)
136 smart00753 PAM PCI/PINT associ 52.2 9.2 0.0002 27.2 1.6 28 204-231 3-30 (88)
137 PF10516 SHNi-TPR: SHNi-TPR; 51.3 26 0.00056 21.7 3.3 25 100-124 6-30 (38)
138 PF01535 PPR: PPR repeat; Int 50.9 13 0.00028 20.4 1.7 25 59-83 2-26 (31)
139 KOG1173|consensus 50.6 2.3E+02 0.005 28.2 11.0 78 60-144 458-535 (611)
140 KOG4555|consensus 49.6 30 0.00065 28.1 4.2 47 93-139 41-88 (175)
141 COG3071 HemY Uncharacterized e 48.0 22 0.00048 33.3 3.7 69 60-128 266-361 (400)
142 KOG1126|consensus 47.3 1.3E+02 0.0028 30.1 8.9 103 20-132 456-560 (638)
143 PF13431 TPR_17: Tetratricopep 46.7 15 0.00033 21.7 1.7 23 93-115 11-33 (34)
144 PF13812 PPR_3: Pentatricopept 46.4 26 0.00056 19.6 2.6 24 59-82 3-26 (34)
145 COG4235 Cytochrome c biogenesi 46.0 24 0.00053 31.7 3.5 38 91-128 152-189 (287)
146 PF14561 TPR_20: Tetratricopep 45.2 80 0.0017 23.0 5.7 35 94-128 21-55 (90)
147 KOG1126|consensus 45.0 2E+02 0.0043 28.8 9.8 104 19-128 491-624 (638)
148 TIGR00756 PPR pentatricopeptid 43.2 27 0.00058 19.3 2.4 23 60-82 3-25 (35)
149 PF13041 PPR_2: PPR repeat fam 42.9 31 0.00066 21.7 2.8 26 58-83 4-29 (50)
150 COG1849 Uncharacterized protei 41.4 51 0.0011 24.5 4.0 31 93-123 39-69 (90)
151 PHA02608 67 prohead core prote 41.0 89 0.0019 22.6 5.1 41 170-214 2-42 (80)
152 PRK03837 transcriptional regul 40.7 1.5E+02 0.0033 24.9 7.6 27 167-193 201-227 (241)
153 PF12862 Apc5: Anaphase-promot 39.5 78 0.0017 22.9 4.9 31 98-128 44-74 (94)
154 PF08544 GHMP_kinases_C: GHMP 38.5 75 0.0016 21.9 4.6 23 172-194 1-23 (85)
155 PF10602 RPN7: 26S proteasome 38.3 2.2E+02 0.0048 23.3 12.1 86 38-124 17-102 (177)
156 PRK15179 Vi polysaccharide bio 38.1 61 0.0013 32.8 5.3 62 62-128 91-153 (694)
157 KOG2471|consensus 38.0 73 0.0016 31.3 5.5 55 96-154 620-674 (696)
158 KOG4507|consensus 37.8 55 0.0012 32.8 4.7 60 64-128 649-709 (886)
159 COG5010 TadD Flp pilus assembl 37.4 2.2E+02 0.0047 25.3 8.0 66 58-127 101-166 (257)
160 TIGR03338 phnR_burk phosphonat 37.1 1.2E+02 0.0026 25.0 6.3 28 166-193 180-207 (212)
161 PF13371 TPR_9: Tetratricopept 36.7 41 0.0009 22.3 2.9 27 102-128 2-28 (73)
162 PF10607 CLTH: CTLH/CRA C-term 36.2 1.2E+02 0.0027 23.3 5.9 31 169-199 5-35 (145)
163 PF12645 HTH_16: Helix-turn-he 34.9 1.2E+02 0.0025 21.0 4.9 26 171-196 2-27 (65)
164 PF12862 Apc5: Anaphase-promot 34.8 1.7E+02 0.0038 21.0 8.1 74 105-189 8-85 (94)
165 COG2186 FadR Transcriptional r 34.8 1.7E+02 0.0038 25.1 7.1 82 108-193 144-225 (241)
166 PF07219 HemY_N: HemY protein 32.9 51 0.0011 24.8 3.0 36 92-127 56-91 (108)
167 PF11157 DUF2937: Protein of u 32.8 2.3E+02 0.0049 23.3 7.1 71 137-207 6-87 (167)
168 PF13525 YfiO: Outer membrane 32.4 2.9E+02 0.0062 22.8 11.5 61 65-128 13-75 (203)
169 TIGR00540 hemY_coli hemY prote 31.9 3.3E+02 0.0071 25.1 8.9 64 58-124 336-399 (409)
170 PRK04841 transcriptional regul 31.4 5.6E+02 0.012 25.9 15.1 107 20-126 494-604 (903)
171 TIGR01716 RGG_Cterm transcript 31.3 2.5E+02 0.0054 23.1 7.3 67 56-124 128-197 (220)
172 COG0173 AspS Aspartyl-tRNA syn 31.0 9.6 0.00021 37.3 -1.5 117 92-214 122-261 (585)
173 PF10300 DUF3808: Protein of u 30.8 4.1E+02 0.0089 25.3 9.5 85 20-111 270-356 (468)
174 PF07720 TPR_3: Tetratricopept 30.2 1.3E+02 0.0028 18.1 4.4 29 96-124 2-32 (36)
175 PLN03218 maturation of RBCL 1; 30.1 7.1E+02 0.015 26.7 16.3 66 58-124 543-608 (1060)
176 COG5071 RPN5 26S proteasome re 30.1 4.5E+02 0.0098 24.4 11.8 101 22-125 136-242 (439)
177 PRK15179 Vi polysaccharide bio 30.1 6E+02 0.013 25.8 10.9 97 17-123 86-182 (694)
178 PF08631 SPO22: Meiosis protei 29.6 2.7E+02 0.0059 24.3 7.6 57 69-125 5-66 (278)
179 KOG4056|consensus 29.2 82 0.0018 25.4 3.7 42 101-154 87-128 (143)
180 COG4700 Uncharacterized protei 28.9 1.4E+02 0.003 25.8 5.2 61 64-128 131-193 (251)
181 TIGR02812 fadR_gamma fatty aci 28.7 3.5E+02 0.0076 22.6 8.1 27 167-193 190-216 (235)
182 COG1729 Uncharacterized protei 28.6 1.3E+02 0.0028 26.8 5.2 66 59-128 144-211 (262)
183 smart00386 HAT HAT (Half-A-TPR 28.3 69 0.0015 17.2 2.4 20 109-128 1-20 (33)
184 KOG0550|consensus 26.6 3.8E+02 0.0082 25.8 8.1 104 93-200 247-353 (486)
185 PF09295 ChAPs: ChAPs (Chs5p-A 26.4 2.8E+02 0.0061 26.1 7.3 61 62-128 205-267 (395)
186 cd02680 MIT_calpain7_2 MIT: do 26.0 94 0.002 22.2 3.2 18 109-126 20-37 (75)
187 KOG0547|consensus 25.6 1.3E+02 0.0028 29.5 5.0 64 66-136 369-434 (606)
188 PRK10421 DNA-binding transcrip 24.5 1.7E+02 0.0036 25.0 5.2 29 166-194 191-219 (253)
189 KOG0548|consensus 24.2 1.4E+02 0.0031 29.2 5.0 77 66-142 307-406 (539)
190 PF13525 YfiO: Outer membrane 24.1 4.1E+02 0.0088 21.8 8.2 133 14-150 39-193 (203)
191 PF11159 DUF2939: Protein of u 23.8 64 0.0014 23.6 2.1 21 170-190 18-38 (95)
192 PF12630 Pox_polyA_pol_N: Poxv 23.8 1.9E+02 0.004 22.3 4.6 51 143-199 8-58 (108)
193 COG3063 PilF Tfp pilus assembl 23.8 1.7E+02 0.0037 25.8 5.0 39 101-140 41-79 (250)
194 COG4785 NlpI Lipoprotein NlpI, 23.7 1.2E+02 0.0025 26.9 3.9 59 66-128 74-132 (297)
195 PF13512 TPR_18: Tetratricopep 23.5 3E+02 0.0066 22.1 6.1 58 68-128 21-80 (142)
196 PHA02992 hypothetical protein; 23.4 1.6E+02 0.0034 29.9 5.2 43 168-210 69-112 (728)
197 PLN02789 farnesyltranstransfer 23.4 3.6E+02 0.0077 24.4 7.3 65 60-128 40-105 (320)
198 KOG2003|consensus 23.2 69 0.0015 31.2 2.6 88 102-190 244-334 (840)
199 PRK04984 fatty acid metabolism 23.0 4.5E+02 0.0098 22.0 8.0 27 167-193 191-217 (239)
200 PRK04841 transcriptional regul 22.7 8.1E+02 0.017 24.8 15.5 109 19-127 614-723 (903)
201 KOG0553|consensus 22.5 2.7E+02 0.0059 25.3 6.2 59 65-128 123-182 (304)
202 KOG4162|consensus 22.3 6.9E+02 0.015 25.8 9.4 81 97-183 686-772 (799)
203 PF03677 UPF0137: Uncharacteri 21.9 5.5E+02 0.012 22.6 8.3 110 77-192 46-170 (243)
204 KOG3060|consensus 21.7 3.9E+02 0.0084 24.1 6.8 83 63-150 160-245 (289)
205 PRK11534 DNA-binding transcrip 21.4 4.7E+02 0.01 21.6 8.1 26 167-192 185-210 (224)
206 KOG4648|consensus 20.7 1E+02 0.0022 29.1 3.1 37 101-137 103-140 (536)
207 PRK11414 colanic acid/biofilm 20.7 4.9E+02 0.011 21.5 7.6 27 167-193 183-209 (221)
208 PF04049 APC8: Anaphase promot 20.5 1.8E+02 0.0038 23.2 4.2 45 62-113 79-123 (142)
No 1
>KOG2581|consensus
Probab=100.00 E-value=3.6e-66 Score=466.28 Aligned_cols=230 Identities=63% Similarity=0.979 Sum_probs=226.6
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhh
Q psy9817 2 SKITSENRRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVK 81 (231)
Q Consensus 2 ~~~~~~~~r~~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~ 81 (231)
..+...|||++|.++||+|||++++||..+++..+|+.|++.+|||++|||++||++++|||+|+|++.+.|++|+++++
T Consensus 154 ~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvs 233 (493)
T KOG2581|consen 154 ASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVS 233 (493)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHH
Q psy9817 82 KSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAV 161 (231)
Q Consensus 82 ~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~ 161 (231)
|+.+|+.++++++++|+||+|||.++|++|++|.+++.+|.+++|++.+.||++.+.|+.|+|+|++|+||++++|.||.
T Consensus 234 K~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~ 313 (493)
T KOG2581|consen 234 KSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPG 313 (493)
T ss_pred cccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCcc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 162 LRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 162 ~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
|+++|.||+.|++|||.||+++|+++++++.+.|.+||||.|+.||||||||+|||+|+++|||||+.||
T Consensus 314 ~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISlsYSRISl~DI 383 (493)
T KOG2581|consen 314 MRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLSYSRISLQDI 383 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeeeeeeccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG2688|consensus
Probab=99.97 E-value=2.9e-31 Score=241.91 Aligned_cols=193 Identities=20% Similarity=0.301 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHhh-cC-C-----cchhHHHHHHHHHHHHhcCChhhHHhhhhccCCC----CCCCchhhHHHHhhH
Q psy9817 33 LDKVRSFLNARLRIATL-RN-D-----FEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFP----ENASNNEWARFHFYL 101 (231)
Q Consensus 33 l~~i~~~l~~~~r~~~l-r~-d-----~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p----~~~~~~~~v~Y~YY~ 101 (231)
++++...++.+++++.- |+ + +++...++|+++++||+++.+++|+++++...-+ ...+-+|+++|+||+
T Consensus 132 le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~Yyl 211 (394)
T KOG2688|consen 132 LEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYL 211 (394)
T ss_pred HHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeee
Confidence 56666667677766543 22 1 4788899999999999999999999999654332 234568999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHHhhcccchHHHHHHHHcCCH
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGEL 181 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl 181 (231)
|++++.+.|+.+|+.+|..||+.||... ..|++.|++|+||+.+++|++|+.+++. ++.+..|.++++|||.||+
T Consensus 212 Gr~a~~~~d~~~A~~~L~~af~~cp~~~-~~n~~~iliylip~~~llg~~Pt~~lL~----~~~~~~~~~lv~aVr~Gnl 286 (394)
T KOG2688|consen 212 GRYAMFESDFLNAFLQLNEAFRLCPDLL-LKNKRLILIYLIPTGLLLGRIPTKELLD----FYTLDKYSPLVQAVRSGNL 286 (394)
T ss_pred eeehhhhhhHHHHHHHHHHHHHhCcHHH-HhhhhhHHHHHhHHHHHhccCcchhhHh----HhhHHhHHHHHHHHHhccH
Confidence 9999999999999999999999999864 7799999999999999999999999999 4557789999999999999
Q ss_pred HHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---ccccCCC
Q psy9817 182 QKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASY---SRITPAK 230 (231)
Q Consensus 182 ~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~Y---srIsl~d 230 (231)
..|+.++++||.+|++.|.|+.++++|..||||+|||+++.- +++|++.
T Consensus 287 ~~f~~al~~~E~~f~~~gi~l~l~~l~lv~yrnL~kkv~~~~~~~~~lpls~ 338 (394)
T KOG2688|consen 287 RLFDLALADNERFFIRSGIYLTLEKLPLVVYRNLFKKVIQLWGKTSQLPLSR 338 (394)
T ss_pred HHHHHHHhhhHHHHHHhccHHHhhhhhHHHHHHHHHHHHHHhCCCCCCCHHH
Confidence 999999999999999999999999999999999999999988 7777653
No 3
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.7e-29 Score=223.53 Aligned_cols=166 Identities=21% Similarity=0.339 Sum_probs=147.5
Q ss_pred cchhHHHHHHHHHHHHhcCChhhHHhhhhccC---CCCC--CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 53 FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA---FPEN--ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 53 ~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~---~p~~--~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+|...++|+|+.+||+++++++|+|+++... .|+. ++.+|+|+|+||+|++|+.+.++.+|+.||..||..||.
T Consensus 173 k~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 173 KVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 47889999999999999999999999996543 3543 456899999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCC-CCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHH
Q psy9817 128 TAAVGFRQTTQKLAVVVELLLGD-IPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LIL 205 (231)
Q Consensus 128 ~~~~~~~~~ilk~lI~v~LllG~-iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~ 205 (231)
- -.+|+.+|+.++||.+|+.|+ .|.++++++. +. ...|.+|++|||+||++.|+.++++||.+|.+.|+|. |..
T Consensus 253 l-~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~--~~-~s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~ltl~~ 328 (413)
T COG5600 253 L-ITRNRKRILPYYIPTSLLVNKFPPTKDLLERF--KR-CSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLYLTLLA 328 (413)
T ss_pred h-hhcchheehhHHhhHHHHhCCCCCchHHHHhc--cc-cchhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchHHHHHh
Confidence 4 379999999999999999765 6778888842 22 5669999999999999999999999999999999997 888
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9817 206 RLRHNVIKTAIRSIGAS 222 (231)
Q Consensus 206 rlr~~v~R~liRki~l~ 222 (231)
+.+..++||++||+|..
T Consensus 329 ~~~~V~~RNL~rk~w~~ 345 (413)
T COG5600 329 HYPLVCFRNLFRKIWRL 345 (413)
T ss_pred hccHHHHHHHHHHHHhh
Confidence 89999999999999864
No 4
>KOG2582|consensus
Probab=99.61 E-value=7.6e-15 Score=132.33 Aligned_cols=176 Identities=14% Similarity=0.183 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHhhhhccCC-----CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh
Q psy9817 55 GQAVLINCLLRNYLHYNLYDQADKLVKKSAF-----PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (231)
Q Consensus 55 ~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~-----p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~ 129 (231)
..+.+.-.++..+++.++|....+.++-.+. ...-+......|.||+|++++...+|++|...|..++ ..|..+
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v-~~Pa~~ 216 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICV-TTPAMA 216 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH-hcchhH
Confidence 3445567889999999999988888742110 1123347999999999999999999999999999999 779877
Q ss_pred hhhHHHHHHHHHHHHHHh-cCCC---CCH-HHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHH
Q psy9817 130 AVGFRQTTQKLAVVVELL-LGDI---PDR-QIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLI 204 (231)
Q Consensus 130 ~~~~~~~ilk~lI~v~Ll-lG~i---P~~-~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv 204 (231)
...+..+++|..+.|+|+ .|++ |+- +--..|.++.--.||.++.++.-.|...+.+..+.+|.+.|.+|++..++
T Consensus 217 vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~ 296 (422)
T KOG2582|consen 217 VSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLA 296 (422)
T ss_pred HHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHH
Confidence 788999999999999988 5984 754 24444566666669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 205 LRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 205 ~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
..+-...++..++|+.++|+++||+||
T Consensus 297 k~av~sl~k~nI~rltktF~sLsL~dI 323 (422)
T KOG2582|consen 297 KQAVSSLYKKNIQRLTKTFLSLSLSDI 323 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999987
No 5
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=98.55 E-value=7.5e-08 Score=71.89 Aligned_cols=64 Identities=28% Similarity=0.561 Sum_probs=58.2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHHc-chhhhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 168 PYFQLTQAVRMGELQKFNEVLTTY-GNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 168 ~Y~~L~~AVr~Gdl~~F~~~l~~~-~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
+|.+|.+|+.+||+..|.+.++++ +..|.++++...++.++..+++..+++++..|++||+++|
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~i 66 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEI 66 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 589999999999999999999999 7888889999999999999999999999999999998753
No 6
>KOG1464|consensus
Probab=97.79 E-value=5.6e-05 Score=67.31 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=84.7
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhc-CCCCCHHH-hhHHHHhh--cccchHHHH
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLL-GDIPDRQI-FRQAVLRR--ALSPYFQLT 173 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~Lll-G~iP~~~l-l~~~~~~~--~L~~Y~~L~ 173 (231)
+=-+|+.++-+++|.+|+..|-.||.+-... .+.-+..++||||+..||| ..|.+++- =..| ++. ..-.--.++
T Consensus 234 RECGGKMHlreg~fe~AhTDFFEAFKNYDEs-GspRRttCLKYLVLANMLmkS~iNPFDsQEAKP-yKNdPEIlAMTnlv 311 (440)
T KOG1464|consen 234 RECGGKMHLREGEFEKAHTDFFEAFKNYDES-GSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP-YKNDPEILAMTNLV 311 (440)
T ss_pred HHcCCccccccchHHHHHhHHHHHHhccccc-CCcchhHHHHHHHHHHHHHHcCCCCCcccccCC-CCCCHHHHHHHHHH
Confidence 4457899999999999999999999654432 3445778899999999997 33433221 1111 011 011245799
Q ss_pred HHHHcCCHHHHHHHHHHcch-----hhhhcchHHHHHHHHHHHHHHHHH
Q psy9817 174 QAVRMGELQKFNEVLTTYGN-----QFRTDYTFKLILRLRHNVIKTAIR 217 (231)
Q Consensus 174 ~AVr~Gdl~~F~~~l~~~~~-----~f~~dg~y~Lv~rlr~~v~R~liR 217 (231)
.|....|+.+|++++..|.+ -|++..+--|+...|.-|.-.++|
T Consensus 312 ~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIk 360 (440)
T KOG1464|consen 312 AAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIK 360 (440)
T ss_pred HHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999875 566666667888888777766665
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.27 E-value=0.014 Score=51.66 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=73.1
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhh-hhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-----HHHhh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAA-VGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-----AVLRR 164 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~-~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-----~~~~~ 164 (231)
......+=-.|.+++-.++|.+|.+.++.....+..+.. .......+-..|+|.|.+|+.... ..+.. |.+..
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 355666667899999999999999999999988765422 223333444557899999985443 22331 11111
Q ss_pred c--ccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHH
Q psy9817 165 A--LSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRH 209 (231)
Q Consensus 165 ~--L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~ 209 (231)
+ ..-=..|++|++.||...|.+++..+.+.=.=|.--. ++.+++.
T Consensus 232 s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k~ 279 (282)
T PF14938_consen 232 SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIKK 279 (282)
T ss_dssp SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 0 0112489999999999999999999877444444322 4444443
No 8
>KOG1463|consensus
Probab=97.15 E-value=0.0027 Score=57.98 Aligned_cols=140 Identities=17% Similarity=0.232 Sum_probs=100.4
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhh---
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRR--- 164 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~--- 164 (231)
|+..|++----.|.+++.+.+|..|+.+|-.||+--..-.....--..+||.++++++++..-+- ++++. -.+++
T Consensus 204 pPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~ 283 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGR 283 (411)
T ss_pred CHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCc
Confidence 34577888889999999999999999999999974433222234556799999999998765544 34443 11221
Q ss_pred cccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHHHHHHHHHHHHHHHhccccCC
Q psy9817 165 ALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRHNVIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 165 ~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~~v~R~liRki~l~YsrIsl~ 229 (231)
.+..-..+++|.+.-+++.|+.++.+|..++..|...- =+..|-.+..-..+=||.--||++-++
T Consensus 284 ~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~ 349 (411)
T KOG1463|consen 284 DIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEIS 349 (411)
T ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHH
Confidence 22335688899999999999999999999999888653 444555555555556666677776543
No 9
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.96 E-value=0.0021 Score=37.85 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
..++|++|.+++-+++|.+|.++++.|++..|.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367899999999999999999999999999986
No 10
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.0035 Score=43.33 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-.+|++.+.++.|...++...-- .++.+..++..|.++.-.++|.+|.+.|+.++..+|.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 46899999999999999765321 13467788889999999999999999999999999975
No 11
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.77 E-value=0.0045 Score=41.96 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=50.2
Q ss_pred HHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-+.|++.|+++.|...+....-- .++-...+|.+|.++..++++.+|...++.|+...|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 36788999999999999754211 14578899999999999999999999999999999864
No 12
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=96.65 E-value=0.09 Score=49.34 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCC----CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh-----------
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENA----SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK----------- 124 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~----~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~----------- 124 (231)
+-.|+|...-+|.|.+|-+.+++..+-... -.+=.|+-+||.|=.|+..++|.+|-..|+..+--
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 556799999999999999999877652211 12456889999999999999999999999988752
Q ss_pred CChh-hhhhHHHHHHHHHHHHHHh-cCCCCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcc---
Q psy9817 125 APQT-AAVGFRQTTQKLAVVVELL-LGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDY--- 199 (231)
Q Consensus 125 ~p~~-~~~~~~~~ilk~lI~v~Ll-lG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg--- 199 (231)
.++. ...+.....+-++..+.-+ -+++|+- +.. .++ ..|.+=......||+..|++....-.-.|+.--
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~-i~~--~lk---eky~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp 278 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQRLDES-ISS--QLK---EKYGEKMEKMQRGDEEAFEELFSFACPKFISPVSPP 278 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCCCCCHH-HHH--HHH---HHHHHHHHHHHccCHHHHHHHHHhhCCCccCCCCCC
Confidence 1111 1123344444444444333 3455553 222 112 226777777899999999999998777776622
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy9817 200 -----------------TFKLILRLRHNVIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 200 -----------------~y~Lv~rlr~~v~R~liRki~l~YsrIsl~ 229 (231)
+=..++.++..-.-..+|---+-|++|+++
T Consensus 279 ~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~ 325 (404)
T PF10255_consen 279 DYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLE 325 (404)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHH
Confidence 112444555555555666677788888875
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.26 E-value=0.13 Score=39.24 Aligned_cols=98 Identities=13% Similarity=-0.030 Sum_probs=64.8
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhh
Q psy9817 21 FYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFY 100 (231)
Q Consensus 21 ~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY 100 (231)
+-.+..+...++..+....+-. +. ..+++. ......+-..|++.++++.|...+....-.. ++-...+|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~----~~-~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~ 90 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQL----LA-AYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALD----PDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHH----HH-HhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCChHHHHH
Confidence 3344444444555555544311 21 112322 2334455778888999999999886542111 234667799
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 101 LGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.|.++...+++.+|...++.|++..|..
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999975
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.23 E-value=0.088 Score=41.89 Aligned_cols=99 Identities=7% Similarity=-0.032 Sum_probs=73.1
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHh
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHF 99 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~Y 99 (231)
++..+.+....++.++....+-. + +..+++... ..+.+-..+.+.|.++.|...+....-. .++....++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~----a-l~~~P~~~~-a~~~lg~~~~~~g~~~~A~~~y~~Al~l----~p~~~~a~~ 96 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSW----L-VMAQPWSWR-AHIALAGTWMMLKEYTTAINFYGHALML----DASHPEPVY 96 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH----H-HHcCCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCCcHHHH
Confidence 56667777777777766644322 2 234444333 3345567788999999999999766432 145678899
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+|.++.-.|++.+|.+.+..|+..+|.+
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999985
No 15
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.97 E-value=0.021 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=28.5
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.-+|..|.++...++|.+|.+++++|+...|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45788999999999999999999999999885
No 16
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.78 E-value=0.029 Score=38.18 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhh-cHHHHHHHHHHHHHhCC
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRL-EYSTAHKNLVQALRKAP 126 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~-~y~~A~~~L~~A~~~~p 126 (231)
.+.+=..|++.+.++.|...+++..-- .+..+..+|..|.++.-++ ++.+|.+++++|+...|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIEL----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 444557788899999999888665311 1344678889999999998 79999999999988766
No 17
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.62 E-value=0.055 Score=37.82 Aligned_cols=66 Identities=24% Similarity=0.180 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccC-----CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSA-----FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-----~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
+.+.+.+-.+|+..+.++.|...+.++. +++ ...+.+.-++-+|.++--.+++.+|.+++++|+..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556777899999999999999986542 232 23467999999999999999999999999999965
No 18
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.53 E-value=0.2 Score=33.46 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
...+-.+|...+.++.|...+.... .|+ .....+..|.++...+++.+|...+..+++.+|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3445666777788888887775432 232 115667778888888888888888888877665
No 19
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.33 E-value=0.03 Score=39.99 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=43.8
Q ss_pred HHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQA 121 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A 121 (231)
+-.+||+.+.++.|-.++.+... ....+...|..|++++-.++|.+|.++|..|
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~-----~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKL-----DPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTH-----HHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 78999999999999999977211 1234677778899999999999999999876
No 20
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.16 E-value=0.49 Score=34.67 Aligned_cols=106 Identities=14% Similarity=0.104 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
++++|=.+......++.+.....+-...... .+..-.......+-..|++.+.++.|...++... .|+. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---PKA 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---Ccc
Confidence 3567777777777788777776664443211 1111112233446788999999999999997542 4431 223
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++..|.++.-.+++.+|..++..++..-|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4568999999999999999999999999998875
No 21
>KOG2908|consensus
Probab=95.12 E-value=2.7 Score=38.75 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCC--CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh-h
Q psy9817 54 EGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPEN--ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ-T 128 (231)
Q Consensus 54 ~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~--~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~-~ 128 (231)
+....+....-+.|+..|....|++++... +..+. .+.+=...|+--...+|=--++|+.++.|.-.=+ .|.. +
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL-~~~d~~ 190 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYL-GCSDID 190 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHh-cccccc
Confidence 355555666778899999999999998421 11111 1111222333333444445566666666554444 2221 1
Q ss_pred -hhhhHHHHHHHHHHHHHHhcCC-CCCH-HHhhHHHHhhccc---c-hHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 129 -AAVGFRQTTQKLAVVVELLLGD-IPDR-QIFRQAVLRRALS---P-YFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 129 -~~~~~~~~ilk~lI~v~LllG~-iP~~-~ll~~~~~~~~L~---~-Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....++ -+-+...+.-++|+ +=+. .++.+|.++.-.. . -.++..|.+.||+.+|+.....+..
T Consensus 191 ~l~~se~~-~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~ 261 (380)
T KOG2908|consen 191 DLSESEKQ-DLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGK 261 (380)
T ss_pred ccCHHHHH-HHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhcc
Confidence 1122222 23444555566777 8787 6788888876443 2 4589999999999999998877665
No 22
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.53 E-value=1.3 Score=37.23 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=76.7
Q ss_pred hhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCC
Q psy9817 11 TSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPEN 88 (231)
Q Consensus 11 ~~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~ 88 (231)
..|...+..+|-.+..+...++.+.....+-..+... ..+++.... ...+-..|++.+.++.|...+.+. ..|+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a-~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQA-QLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 5677777888888888877788887777665544322 222332222 344467888899999999988654 35642
Q ss_pred CCchhhHHHHhhHHHHHHHh--------hcHHHHHHHHHHHHHhCChh
Q psy9817 89 ASNNEWARFHFYLGRIKAVR--------LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 89 ~~~~~~v~Y~YY~Gri~~~~--------~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+...-+|..|.++.-. +++.+|.+.++.+++.-|.+
T Consensus 104 ---~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 104 ---PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred ---CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 22233467888888765 78999999999998887764
No 23
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.50 E-value=0.077 Score=31.04 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=28.7
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
..+|-.|.++.-.+++.+|.+++..|++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678899999999999999999999999877
No 24
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=94.47 E-value=0.27 Score=44.02 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC-CCCC-------------------------------CCchhhHHHHhhHHHHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA-FPEN-------------------------------ASNNEWARFHFYLGRIKAV 107 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~-~p~~-------------------------------~~~~~~v~Y~YY~Gri~~~ 107 (231)
+-+.+.+|++.|.+++|++.+++.. +.+. ...++.+.=+.=.+...+.
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4467789999999999999985431 1111 0011222234456778889
Q ss_pred hhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH--HHhhHHHHhhcccchHHHHHHHHcCCHHHHH
Q psy9817 108 RLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR--QIFRQAVLRRALSPYFQLTQAVRMGELQKFN 185 (231)
Q Consensus 108 ~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~--~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~ 185 (231)
+++|.+|++.|.+|+..-|.+. ..+--+|++..++|+-++. ..+.+ ++ ...|-.+++..+..-+ ..|+
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~------d~LaNliv~~~~~gk~~~~~~~~l~q--L~-~~~p~h~~~~~~~~~~-~~FD 283 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDP------DTLANLIVCSLHLGKPTEAAERYLSQ--LK-QSNPNHPLVKDLAEKE-AEFD 283 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHH------HHHHHHHHHHHHTT-TCHHHHHHHHH--CH-HHTTTSHHHHHHHHHH-HHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHhCCChhHHHHHHHH--HH-HhCCCChHHHHHHHHH-HHHH
Confidence 9999999999999987666531 2455678899999987643 23332 22 2244456666665443 6788
Q ss_pred HHHHHc
Q psy9817 186 EVLTTY 191 (231)
Q Consensus 186 ~~l~~~ 191 (231)
+++.++
T Consensus 284 ~~~~ky 289 (290)
T PF04733_consen 284 RAVAKY 289 (290)
T ss_dssp HHHHCC
T ss_pred HHHHhc
Confidence 777765
No 25
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.34 E-value=1.2 Score=35.08 Aligned_cols=99 Identities=22% Similarity=0.135 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHhcCChhhHHhhhhccCCCCCCCchh
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLIN-CLLRNYLHYNLYDQADKLVKKSAFPENASNNE 93 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N-~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~ 93 (231)
.++-..+..+..+--.++++.....+-...... .|+ ....++. .|-++++..++++.|...+....-+ +.
T Consensus 46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~-~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-----~~ 116 (145)
T PF09976_consen 46 YAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDP-ELKPLARLRLARILLQQGQYDEALATLQQIPDE-----AF 116 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-----ch
Confidence 344456666666666677777776654433321 233 2223333 3678889999999999998653221 23
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (231)
...+....|.+++-+|++.+|...++.|+
T Consensus 117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 117 KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 34567789999999999999999888874
No 26
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=94.17 E-value=0.76 Score=38.61 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCC--hhhHHhhhhccCCCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNL--YDQADKLVKKSAFPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~--~~~a~~l~~~~~~p~~~~~~~~ 94 (231)
+..|+-.++.+...++.++....+-.++ +.+++...+..++-.-.|++.|. ++.|..++.+..--+ ++-
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-----~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d----P~~ 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQAL-----QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD----ANE 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC----CCC
Confidence 4558888888887777777775553322 33444444445543334567666 478888886542111 233
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++-++.+|..++-.++|.+|..+++.++..-|..
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5677888999999999999999999998887774
No 27
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.16 E-value=1.3 Score=35.92 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
-.|..+|..+..+...+..++....+-.++... .+..........+-..|.+.|.++.|...+.+.. .|.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE---EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK----- 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----
Confidence 445567777777777777776665554433321 1222223344455677788888888888775432 222
Q ss_pred hhHHHHhhHHHHHHHhhc--------------HHHHHHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRLE--------------YSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~--------------y~~A~~~L~~A~~~~p~ 127 (231)
....++..|.++.-.++ |.+|.++++.|+...|.
T Consensus 105 -~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 105 -QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred -cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 23444555666666555 44555555555555444
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.00 E-value=4.8 Score=39.30 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=41.8
Q ss_pred HHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+-..|++.|.++.|...+... .+|. ....+++.|.++.-.++|.+|...+..|+...|.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNFPE------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 345566666666666666543 2332 2445677899999999999999999999988876
No 29
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=1.4 Score=40.01 Aligned_cols=163 Identities=14% Similarity=0.219 Sum_probs=102.9
Q ss_pred HHHHHhcCChhhHHhhhh------ccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHH
Q psy9817 64 LRNYLHYNLYDQADKLVK------KSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTT 137 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~------~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~i 137 (231)
-+.|.++++..-++.-+. ++.. .|+.-++.----.|.+..-+.+|..|+.+|-.|++--+.-....-.-..
T Consensus 172 SKvyh~irnv~KskaSLTaArt~Ans~Y---CPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 172 SKVYHEIRNVSKSKASLTAARTLANSAY---CPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccC---CCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 366666666665554442 1121 1234567777788999999999999999999999854432112222235
Q ss_pred HHHHHHHHHhcCCCCCH-HHhhHHHHh-----hcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHHH
Q psy9817 138 QKLAVVVELLLGDIPDR-QIFRQAVLR-----RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRHN 210 (231)
Q Consensus 138 lk~lI~v~LllG~iP~~-~ll~~~~~~-----~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~~ 210 (231)
+||+++-++++..+-+- ++++..... +....-..+++|..+.++..|+.++.+++.++..|..-- =+.-|-.+
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LYD~ 328 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLYDV 328 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHHHH
Confidence 89999988887665543 444431111 112224567888888899999999999887766665432 34444455
Q ss_pred HHHHHHHHHHHHhccccCC
Q psy9817 211 VIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 211 v~R~liRki~l~YsrIsl~ 229 (231)
..-..+-||.--||++-++
T Consensus 329 LLe~Nl~kiiEPfs~Veis 347 (421)
T COG5159 329 LLEKNLVKIIEPFSVVEIS 347 (421)
T ss_pred HHHhhhhhhcCcceeeehh
Confidence 5555555666666666544
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.45 E-value=0.91 Score=40.33 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
|..||..+..+...+..+..+..+-.++. .++.. ....+.+-..|.+.|.++.|...+.+.. .|+ .
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~-----l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~------~ 131 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALA-----LRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT------Y 131 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------C
Confidence 67799999999988888777765533332 33322 3445667789999999999999887652 233 2
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++..|.++...+++.+|.+.+..|+...|.+
T Consensus 132 ~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 132 NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3456779999999999999999999999998864
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=93.34 E-value=3.4 Score=33.01 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+..++-.+..+...++.+.....+-..+. .++.. ....+.+-..|+..+.++.|...+.+.. .|+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-----~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------ 97 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE-----HDPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------ 97 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------
Confidence 467788888888778887777766654443 22222 2344556788999999999999886542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhh---cccch
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRR---ALSPY 169 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~---~L~~Y 169 (231)
.....+..|.++..++++.+|.+.+..++...+... ....+..+.-+..-.|+.... ..+.+ .+.. ....+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~ 172 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALKAGDFDKAEKYLTR-ALQIDPQRPESL 172 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCcCChHHH
Confidence 224567779999999999999999999997532211 111122223344446765543 22322 1111 11124
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHcch
Q psy9817 170 FQLTQA-VRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 170 ~~L~~A-Vr~Gdl~~F~~~l~~~~~ 193 (231)
..+..+ ...||..+-.+.+++...
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455554 456887766666665433
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.26 E-value=1.8 Score=36.31 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=51.7
Q ss_pred HHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+-..|++.++++.|...+... ..|+. .....-+|.+|..+.-++++.+|...+..+++..|.+
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH 103 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 3466789999999999998653 34542 2334457999999999999999999999999999975
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.23 E-value=5.7 Score=38.78 Aligned_cols=105 Identities=14% Similarity=-0.008 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchh
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNE 93 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~ 93 (231)
.-.+.+++..+..+...+..+.....+-.... .++.... ..-.+-..++..+.++.|..++.+..-. .+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~ 191 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALA-----IDPRSLY-AKLGLAQLALAENRFDEARALIDEVLTA----DPG 191 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChh-hHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC
Confidence 34456677777777777776666654433222 2222111 2233456778889999999888654211 122
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....+++.|.++...+++.+|...+.+|+...|.+
T Consensus 192 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 35677889999999999999999999999988864
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.96 E-value=0.49 Score=31.93 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.9
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+..++-.|.+++-+++|.+|..+++.|+...|.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~ 36 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN 36 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 35678889999999999999999999999999976
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=92.93 E-value=6.7 Score=35.21 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=29.4
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
+-..|.+.|.++.|...+.+.. .|+ .+.-++.+|.++.-.+++.+|.+.+..+....|
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQ------CVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 3344555555555555554321 121 123445566666666666666666666665544
No 36
>KOG4162|consensus
Probab=92.74 E-value=0.69 Score=46.41 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=78.5
Q ss_pred hhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHh--hhhccC-CCC
Q psy9817 11 TSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADK--LVKKSA-FPE 87 (231)
Q Consensus 11 ~~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~--l~~~~~-~p~ 87 (231)
.+|++.+-+||=-++.+|-.++..+....++.++ --||+....++ -+-+++.+.|+..+|.. +++.+- ..
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-----~ldP~hv~s~~-Ala~~lle~G~~~la~~~~~L~dalr~d- 750 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL-----ALDPDHVPSMT-ALAELLLELGSPRLAEKRSLLSDALRLD- 750 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-----hcCCCCcHHHH-HHHHHHHHhCCcchHHHHHHHHHHHhhC-
Confidence 4678888888888888888887777776665544 34555444433 34678889999999998 765442 21
Q ss_pred CCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 88 NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 88 ~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+.--.-.||+|.+...+|+.++|-+||+.|+...+.+
T Consensus 751 ----p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 751 ----PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred ----CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 1223568999999999999999999999999976653
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=92.45 E-value=9.8 Score=37.13 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhh
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEW 94 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~ 94 (231)
-.+..+++.+.++...++.++....+-.+.. .+.+.. -..-.+-+.|...|.++.|-..+.+...+ ...+.
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~a~~~~~~g~~~~a~~~~~~~~~~---~~~~~ 124 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALS----LGYPKN--QVLPLLARAYLLQGKFQQVLDELPGKTLL---DDEGA 124 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCChh--hhHHHHHHHHHHCCCHHHHHHhhcccccC---Cchhh
Confidence 3556788999999888888877766533322 111111 12234567788888888888877544211 12455
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++..|..+.-.+++.+|...|..|+...|.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 158 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRS 158 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 6777888888888888888888888888877754
No 38
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.41 E-value=1.3 Score=29.34 Aligned_cols=60 Identities=25% Similarity=0.258 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-..|+..+.++.|...+.... .|+ . ....+..|.++...+++.+|.+.++.++...|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD----N--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc----c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4567788899999999886542 232 1 2667899999999999999999999999888764
No 39
>KOG1497|consensus
Probab=92.27 E-value=9.2 Score=35.20 Aligned_cols=207 Identities=19% Similarity=0.186 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHhcCChhhHHhhhhccCCCCCCCchh-
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLIN-CLLRNYLHYNLYDQADKLVKKSAFPENASNNE- 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N-~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~- 93 (231)
.+-+=+-.+-.||..+++.+..+.|.+.=.-.-.+..+.++..... .+-|.|++.+....|+-++..+++|...+.++
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~ 181 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQ 181 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHH
Confidence 3444566677777777776666655321100000111222333332 35689999999999999999988886444443
Q ss_pred -hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHH-----hhHHHHhhccc
Q psy9817 94 -WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQI-----FRQAVLRRALS 167 (231)
Q Consensus 94 -~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~l-----l~~~~~~~~L~ 167 (231)
++.|.---+|+.=..++|-||-..+..-...--- ...-+.+.++..+.+-+|-|-=|.++- |.++.. +.++
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~--~e~~~~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~-~~l~ 258 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIV--DESERLEALKKALQCTLLASAGPQRSRMLATLFKDERC-QKLP 258 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHhHhheeecCCChHHHHHHHHHhcCccc-cccc
Confidence 4778778889988999999998887754432111 245588889998888888776676642 332221 2333
Q ss_pred chHH-----HHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy9817 168 PYFQ-----LTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 168 ~Y~~-----L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~YsrIsl~ 229 (231)
.|.- +.+-++..++..|...+..|+..=..||.-. +-..++-..+--++.-|--||++
T Consensus 259 ~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssi----l~ra~~EhNlls~Skly~nisf~ 321 (399)
T KOG1497|consen 259 AYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSI----LDRAVIEHNLLSASKLYNNISFE 321 (399)
T ss_pred chHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchh----hhhHHHHHhHHHHHHHHHhccHH
Confidence 3443 3446777889999999999988766676532 23346666777777777777754
No 40
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.22 E-value=0.33 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=27.9
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+|.+|+++.-.+++.+|.+.|+..+..-|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 588999999999999999999999998885
No 41
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.91 E-value=5.2 Score=35.18 Aligned_cols=193 Identities=17% Similarity=0.135 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
+|-.|---+..+...+...........+-....-.++++..+-.....-.+|-+. +++.|...+.+.. +-+......
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4445666666666666666666555444332222233444443333445555444 7777776664431 112223357
Q ss_pred hHHHHhhHHHHHHHh-hcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHH--------HHh
Q psy9817 94 WARFHFYLGRIKAVR-LEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA--------VLR 163 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~--------~~~ 163 (231)
.+..+.=+|.++--+ +++.+|.+++++|...-...........++.-+.-+..-+|+.+.. .++.+- .++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 788888889999888 9999999999999985443322344445555556666667876654 344421 112
Q ss_pred hcccch-H-HHHHHHHcCCHHHHHHHHHHcch---hhhhcchHHHHHHHHH
Q psy9817 164 RALSPY-F-QLTQAVRMGELQKFNEVLTTYGN---QFRTDYTFKLILRLRH 209 (231)
Q Consensus 164 ~~L~~Y-~-~L~~AVr~Gdl~~F~~~l~~~~~---~f~~dg~y~Lv~rlr~ 209 (231)
.+...| . .++-.+..||...-++.++++.+ .|....-+-+++.|-.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 222222 2 44445578999999999999874 4656555666666644
No 42
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.77 E-value=0.81 Score=30.60 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++||++.-+.=.++|++|..+...+++.-|.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 478999999999999999999999999999976
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.60 E-value=5.9 Score=31.60 Aligned_cols=103 Identities=18% Similarity=0.138 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCC-CCCCCchhhH
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAF-PENASNNEWA 95 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~-p~~~~~~~~v 95 (231)
+.+++-.+..+...++.+.....+-..+.. ++. .....+.+-..|+..|.++.|...+.+..- |+ .....
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ 135 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL-----NPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---YPQPA 135 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc---cccch
Confidence 444555566666666655555444333321 111 112334445667777777777777754421 11 12334
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-.|.++...+++.+|...+..|+...|.+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 445566777777777777777777777766653
No 44
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.40 E-value=4.1 Score=32.62 Aligned_cols=102 Identities=13% Similarity=0.007 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC-Cchh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA-SNNE 93 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~-~~~~ 93 (231)
|.+|+..+..+.-.+..+.....+-.++.. ..++.......+.+-.+|.+.+.++.|...+.+.. .|+.. ....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l---~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRL---EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 445566666665555555544433222221 11222222344445667777777777777764431 22211 1123
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQA 121 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A 121 (231)
....++..|+.+.-.+++.+|...+.+|
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 4444555555555666666444444443
No 45
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.40 E-value=1.8 Score=29.90 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcch-hHHHHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG-QAVLINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~-~~~l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
-.|.+|+..|.++...++.++..+.+-.++.....-+++.. .+...+.+=.+|-..|.++.|...+.++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46889999999999999999999999888887544454443 4667788899999999999999887543
No 46
>KOG1076|consensus
Probab=90.83 E-value=20 Score=36.22 Aligned_cols=207 Identities=17% Similarity=0.227 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc-CCcchhHHHHH----HHHHHHHhcCChhhHHhhhhccCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR-NDFEGQAVLIN----CLLRNYLHYNLYDQADKLVKKSAFPE 87 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr-~d~~~~~~l~N----~Llr~Yf~~~~~~~a~~l~~~~~~p~ 87 (231)
|.+-+++.-++-.-|-+.+++..+|+.|+.++--.... .|..+| ++.| .|=-+=|+.|....|...++-..
T Consensus 482 ~r~rtRAmLchIYh~AL~d~f~~ARDlLLMSHlQdnI~h~D~stQ-IL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl~--- 557 (843)
T KOG1076|consen 482 DRLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHADISTQ-ILFNRTMVQLGLCAFRQGMIKEAHQCLSDLQ--- 557 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccChhHH-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH---
Confidence 45555654444444456667788888877665444444 455544 4544 34456689999999999985332
Q ss_pred CCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhH--------
Q psy9817 88 NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQ-------- 159 (231)
Q Consensus 88 ~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~-------- 159 (231)
+.+.++=+-=.|...-.+++.+.-.+....+-. -|-+ .+-|..++--....+.||+ +||.-.-...
T Consensus 558 ---st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQ-lPyH-mHINLELlEcVyLtcaMLl-EIP~MAA~~~d~Rrr~iS 631 (843)
T KOG1076|consen 558 ---STGRVKELLGQGVLQRRQHEKTAEQEKIERRRQ-LPYH-MHINLELLECVYLTCAMLL-EIPYMAAHESDARRRMIS 631 (843)
T ss_pred ---hcchHHHHHhhhhhhhhhhccChhhHHHHHhhc-Cchh-hhccHHHHHHHHHHHHHHH-hhhHHhhhhhhhhccccc
Confidence 123344444445555566666666666666664 6776 3566666655555566665 5665322110
Q ss_pred HHHhhcc---------cc------hH-HHHHHHHcCCHHHHHHHHHHcchhh---hh-cchHH-HHHHHHHHHHHHHHHH
Q psy9817 160 AVLRRAL---------SP------YF-QLTQAVRMGELQKFNEVLTTYGNQF---RT-DYTFK-LILRLRHNVIKTAIRS 218 (231)
Q Consensus 160 ~~~~~~L---------~~------Y~-~L~~AVr~Gdl~~F~~~l~~~~~~f---~~-dg~y~-Lv~rlr~~v~R~liRk 218 (231)
..+.+.| .| |- .=++|...||..+..+.+-.+...| -. |.... |.+|.+.--.||-+=.
T Consensus 632 k~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLft 711 (843)
T KOG1076|consen 632 KSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFT 711 (843)
T ss_pred HHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11 22 4467899999999888655544433 22 33333 8899999999999988
Q ss_pred HHHHhccccCC
Q psy9817 219 IGASYSRITPA 229 (231)
Q Consensus 219 i~l~YsrIsl~ 229 (231)
-+..|+.||++
T Consensus 712 Yss~Y~SvSl~ 722 (843)
T KOG1076|consen 712 YSSVYDSVSLA 722 (843)
T ss_pred hhhhhhhccHH
Confidence 88899999875
No 47
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.77 E-value=4.6 Score=32.32 Aligned_cols=76 Identities=16% Similarity=0.028 Sum_probs=59.7
Q ss_pred cCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 50 RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 50 r~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
..+.+.++.....+-..++..+.++.|...+... ..|+ ..+...-++-+|.++...+++.+|...+..|++.-|.
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3455667777778888999999999999998765 2333 1234456788999999999999999999999987665
Q ss_pred h
Q psy9817 128 T 128 (231)
Q Consensus 128 ~ 128 (231)
.
T Consensus 105 ~ 105 (168)
T CHL00033 105 L 105 (168)
T ss_pred c
Confidence 3
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=90.75 E-value=3.4 Score=41.07 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.++..++..+...++.+.....+-..+. .+++.. .....+-..|.+.|.++.|...+.... .| +.
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~-----l~P~~~-~a~~~La~~l~~~G~~~eA~~~l~~al~~~P------~~ 351 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA-----THPDLP-YVRAMYARALRQVGQYTAASDEFVQLAREKG------VT 351 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------cc
Confidence 34555556666555555555544322221 122221 223345677778888888877775432 22 22
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKL 140 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~ 140 (231)
..+.++.|..+...|++.+|...|..|++..|......+...+..+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~ 397 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLAL 397 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHH
Confidence 3456667888888888999999998888888875434444444333
No 49
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=90.51 E-value=0.53 Score=39.15 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=63.2
Q ss_pred hhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHH---------HhhHHHHhhcccchHHHHHHHHc
Q psy9817 108 RLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQ---------IFRQAVLRRALSPYFQLTQAVRM 178 (231)
Q Consensus 108 ~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~---------ll~~~~~~~~L~~Y~~L~~AVr~ 178 (231)
.+++.+....|...+..........+..++.-|.++..+..|..|+.. +...|.++.. .++..|+..
T Consensus 72 ~~qf~~c~~~L~~lY~~~~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~a----l~l~~a~~~ 147 (204)
T PF03399_consen 72 LEQFNQCLSQLKELYDDLRDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFA----LELCRALME 147 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHH----HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHH----HHHHHHHHc
Confidence 455555555565555543111125667778788777665556555442 2222222222 368899999
Q ss_pred CCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCC
Q psy9817 179 GELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSR-ITPAK 230 (231)
Q Consensus 179 Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~Ysr-Isl~d 230 (231)
||..+|-+.+++....+. .-.++++.-..+-...++.++.+|.. ||+++
T Consensus 148 gny~~ff~l~~~~~~~~l---~~~l~~~~~~~iR~~al~~i~~ay~~~i~l~~ 197 (204)
T PF03399_consen 148 GNYVRFFRLYRSKSAPYL---FACLMERFFNRIRLRALQSISKAYRSSIPLSF 197 (204)
T ss_dssp TTHHHHHHHHT-TTS-HH---HHHHHGGGHHHHHHHHHHHHHHHS-T-EEHHH
T ss_pred CCHHHHHHHHhccCCChH---HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 999999998833222222 11255556666677788889999988 87653
No 50
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.31 E-value=0.52 Score=29.58 Aligned_cols=31 Identities=23% Similarity=0.142 Sum_probs=28.6
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++-+|+.+.-.|++.+|...|+.++...|.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567999999999999999999999999986
No 51
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=90.08 E-value=2.8 Score=40.91 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
+-.+-+|+..+..+...++.+.....+-.++. .++.-... ...+-.+|+..|.++.|...+.+.. .|+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~-----l~P~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~p~---- 397 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIE-----LDPRVTQS-YIKRASMNLELGDPDKAEEDFDKALKLNSE---- 397 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCcHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Confidence 44555677777777777776666655533332 12211111 1122344556666666666654431 121
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
....+|..|.++...++|.+|..+++.|+..-|.
T Consensus 398 --~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 398 --DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 1234555666666666666666666666655554
No 52
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.86 E-value=0.21 Score=33.64 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=43.6
Q ss_pred HhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 68 LHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 68 f~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.|+++.|..++.+. ..|+ -...++.+|.+++-+|++.+|.+.|..+....|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 5678889999988654 2343 35566689999999999999999999999988874
No 53
>PRK11906 transcriptional regulator; Provisional
Probab=89.06 E-value=8.2 Score=36.92 Aligned_cols=124 Identities=12% Similarity=0.139 Sum_probs=71.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhc---ccHHHHHHHHHHHHHHH---hhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhh
Q psy9817 8 NRRTSDLIAAKCYFYHSRVHELT---NNLDKVRSFLNARLRIA---TLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVK 81 (231)
Q Consensus 8 ~~r~~d~~~ak~~~y~~~~~e~~---~~l~~i~~~l~~~~r~~---~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~ 81 (231)
|...+|+--|..|=..|.+|... +-.+ .....-.+.+.| ...+..+.++-...- ......+.++.|...++
T Consensus 286 ~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g--~~~~~~~~~~~a~~~f~ 362 (458)
T PRK11906 286 NKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMG--LITGLSGQAKVSHILFE 362 (458)
T ss_pred hcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhhcchhhHHHHHH
Confidence 44456666666666666665422 1111 122222333332 323323333333222 22334455889998886
Q ss_pred ccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH
Q psy9817 82 KSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAV 142 (231)
Q Consensus 82 ~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI 142 (231)
.+..- ++..+.=+||.|.+.+..|+..+|.++++.|++..|-. ..--++|.+|
T Consensus 363 rA~~L----~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~----~~~~~~~~~~ 415 (458)
T PRK11906 363 QAKIH----STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR----RKAVVIKECV 415 (458)
T ss_pred HHhhc----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh----hHHHHHHHHH
Confidence 55321 12334557899999999999999999999999999953 3334566665
No 54
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.83 E-value=0.83 Score=24.27 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.++-.|.++.-.+++.+|..+++.|+...|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4677899999999999999999999976653
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.72 E-value=29 Score=35.09 Aligned_cols=138 Identities=15% Similarity=0.120 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChhhHHhhhhcc--CCCC---------CCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKS--AFPE---------NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAA 130 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~--~~p~---------~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~ 130 (231)
.|...|.+.+.++.|...+.+. ..|+ ..|+.+.....+..|.++...+++.+|.+.|+.+....|.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~- 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ- 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Confidence 4455678889999998887533 2232 233456788889999999999999999999999999999762
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhhcccc------hHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHH
Q psy9817 131 VGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRRALSP------YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKL 203 (231)
Q Consensus 131 ~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~~L~~------Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~L 203 (231)
.++..+.-+..-.|+.... ..+++ .+ .+.| |..-..+.+.|+..+-.+.+++-...+-.+....-
T Consensus 394 -----~l~~~lA~l~~~~g~~~~A~~~l~~-al--~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 394 -----GLRIDYASVLQARGWPRAAENELKK-AE--VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHH-HH--hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 1333334444556774332 23332 11 1122 34445688889987777777766665555555555
Q ss_pred HHHHH
Q psy9817 204 ILRLR 208 (231)
Q Consensus 204 v~rlr 208 (231)
+.|.+
T Consensus 466 ~~~~~ 470 (765)
T PRK10049 466 LARAR 470 (765)
T ss_pred HHHHH
Confidence 55554
No 56
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=88.37 E-value=18 Score=32.35 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
..+++-+|..+.-++++.+|...+..++...|.
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 212 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC
Confidence 334444555555555555555555555555443
No 57
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=88.17 E-value=1.8 Score=35.48 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=63.0
Q ss_pred HHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHH
Q psy9817 66 NYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVE 145 (231)
Q Consensus 66 ~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~ 145 (231)
...+.|.++.|++++.-...-+ .+..+|.|=+|.++=..++|.+|-+.+..|+...|.+. . ..-++-.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-~-----~~~~ag~c~ 113 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-Q-----APWAAAECY 113 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-h-----HHHHHHHHH
Confidence 4468999999999986543222 46789999999999999999999999999999988753 1 345666777
Q ss_pred HhcCCCCCH
Q psy9817 146 LLLGDIPDR 154 (231)
Q Consensus 146 LllG~iP~~ 154 (231)
|.+|+++..
T Consensus 114 L~lG~~~~A 122 (157)
T PRK15363 114 LACDNVCYA 122 (157)
T ss_pred HHcCCHHHH
Confidence 888988763
No 58
>KOG1498|consensus
Probab=87.93 E-value=11 Score=35.48 Aligned_cols=205 Identities=18% Similarity=0.197 Sum_probs=127.7
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC---CCCCCCchhhHH
Q psy9817 22 YHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA---FPENASNNEWAR 96 (231)
Q Consensus 22 y~~~~~e~~~~l~~i~~~l~~~~r~~~lr--~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~---~p~~~~~~~~v~ 96 (231)
-.+...|..|.+.++.+.|.+.-. -+-- ...+...+++-+ +|.|+-.+.|-.|.-+-+|.. |.+...-..-..
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V-ETygsm~~~ekV~fiLEQ-mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlk 213 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV-ETYGSMEKSEKVAFILEQ-MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLK 213 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHH
Confidence 345667888888888877755221 1100 112344444444 688888888888887765553 222112234466
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhh-hhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhhcc---cchHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAA-VGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRRAL---SPYFQ 171 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~-~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~~L---~~Y~~ 171 (231)
|++..=++..-++.|-++-.++..-. .+|...+ +.-...++.-.+.-.++--.-|.. +++.+-...+.| +.|.+
T Consensus 214 yY~lmI~l~lh~~~Yl~v~~~Yraiy-~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~ 292 (439)
T KOG1498|consen 214 YYELMIRLGLHDRAYLNVCRSYRAIY-DTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKE 292 (439)
T ss_pred HHHHHHHhcccccchhhHHHHHHHHh-cccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhcccccccCccHHH
Confidence 66666677777899999999987766 4454311 111111222211111222223333 344433333444 34999
Q ss_pred HHHHHHcCCHHHHHHHHHHcchhhhhcchH-------HHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy9817 172 LTQAVRMGELQKFNEVLTTYGNQFRTDYTF-------KLILRLRHNVIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 172 L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y-------~Lv~rlr~~v~R~liRki~l~YsrIsl~ 229 (231)
++..+-+|-+-.|....+.++..+..++.+ .-.+-|+.-|+.-.+|-|..-||||++.
T Consensus 293 lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~ 357 (439)
T KOG1498|consen 293 LLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLK 357 (439)
T ss_pred HHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 999999999999998888888888777322 3677888899999999999999999975
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=87.47 E-value=6.3 Score=34.14 Aligned_cols=101 Identities=21% Similarity=0.204 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~ 93 (231)
.+.+|+..+..++..|..+.....+-.++ +.+|+... +.+.+...++..|.++.+..+++.- ..|+ +.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al-----~~~P~~~~-~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~----~~ 214 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKAL-----ELDPDDPD-ARNALAWLLIDMGDYDEAREALKRLLKAAPD----DP 214 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHH-----HH-TT-HH-HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT----SC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHHHCcC----HH
Confidence 35568888999998888877775553333 23333222 4555677888999999888887432 1122 11
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+....|..++..+++.+|...+..+...-|.+
T Consensus 215 --~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 215 --DLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp --CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred --HHHHHHHHHhccccccccccccccccccccccc
Confidence 245567999999999999999999999888865
No 60
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=87.18 E-value=9.8 Score=34.85 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+-..|++.|.++.|...+....-- .+.....++-+|.++.-.++|.+|..+|..|+...|.+
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 44567889999999999998665210 12335567889999999999999999999999999975
No 61
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=87.09 E-value=5.2 Score=30.21 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.++++.|...+... ..| +....++.+|.++.-++++.+|...+.+|+...|.+
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445677788999999999998654 123 235677899999999999999999999999887764
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=87.04 E-value=6 Score=38.35 Aligned_cols=26 Identities=8% Similarity=-0.157 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQAL 122 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (231)
.++++|.++...|++.+|.+.+....
T Consensus 443 ~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 443 LLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 34445555555555555555554443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=86.95 E-value=31 Score=33.41 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=71.8
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKL 140 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~ 140 (231)
+-..+...+.++.|...+.+.. .|+ -...+|++|.+++..|++.+|.+++..|++..|.+..... .
T Consensus 344 lg~~~~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~------~ 411 (553)
T PRK12370 344 LGLINTIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI------T 411 (553)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH------H
Confidence 3456778899999999987642 243 2345688999999999999999999999999997521111 1
Q ss_pred HHHHHHhcCCCCCH-HHhhHHHHhh--cccc--hHHHHHHH-HcCCHHHHHHHHHHc
Q psy9817 141 AVVVELLLGDIPDR-QIFRQAVLRR--ALSP--YFQLTQAV-RMGELQKFNEVLTTY 191 (231)
Q Consensus 141 lI~v~LllG~iP~~-~ll~~~~~~~--~L~~--Y~~L~~AV-r~Gdl~~F~~~l~~~ 191 (231)
+.-+-..+|+.... ..+.+ .++. .-.| +..+..+. ..|+..+-.+++++.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~-~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDE-LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHhccCHHHHHHHHHH-HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 11123446875322 22221 2211 1111 34455444 678887777666553
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=86.63 E-value=11 Score=30.31 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=58.3
Q ss_pred CcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 52 d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+..+.+.....+-..|...+.++.|...+.+.. -|+ ..+....++-+|.++.-.++|.+|...+..|++..|..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 344555666777889999999999999886542 232 12346788999999999999999999999999988864
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=85.98 E-value=4.5 Score=35.84 Aligned_cols=73 Identities=18% Similarity=0.025 Sum_probs=55.8
Q ss_pred CcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 52 DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 52 d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+++..+-....+=..|.+.|.++.|...+.+..-- +++...-++.+|.++...++|.+|.+.+..|++..|.+
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 131 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44554555556666899999999999887654210 12335677899999999999999999999999998875
No 66
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=85.46 E-value=1.9 Score=34.17 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=50.0
Q ss_pred HhcCCCCCHHHhhH---HHHhhc---ccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHH
Q psy9817 146 LLLGDIPDRQIFRQ---AVLRRA---LSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSI 219 (231)
Q Consensus 146 LllG~iP~~~ll~~---~~~~~~---L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki 219 (231)
|+.+.++++.++-. +.++.. +..=..|.+++.+||..+|-+.++.+. + .+..-.+|..+...+-..-+.-|
T Consensus 15 L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~--~-~~~~~~~v~~~~~~iR~~i~~~i 91 (143)
T PF10075_consen 15 LMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNP--W-SPDYKPFVPGFEDTIRERIAHLI 91 (143)
T ss_dssp HHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT-------HHHHTSTTHHHHHHHHHHHHH
T ss_pred HHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhcc--c-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566777654321 222221 122347889999999999999888651 1 12233366677788888889999
Q ss_pred HHHhccccCCC
Q psy9817 220 GASYSRITPAK 230 (231)
Q Consensus 220 ~l~YsrIsl~d 230 (231)
..+|++||+++
T Consensus 92 ~~aY~sIs~~~ 102 (143)
T PF10075_consen 92 SKAYSSISLSD 102 (143)
T ss_dssp HHH-SEE-HHH
T ss_pred HHHHhHcCHHH
Confidence 99999999764
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=84.89 E-value=4.9 Score=31.74 Aligned_cols=62 Identities=18% Similarity=-0.056 Sum_probs=50.4
Q ss_pred HHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+=..+++.|.++.|...+....-- .+....+++-+|.+..-.++|.+|.+++..|+...|.+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 356778999999998888654221 13457888999999999999999999999999998875
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=83.68 E-value=19 Score=36.37 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWA 95 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v 95 (231)
.+++..+......+.+++....+-.... .++.. .-+...+-..|...|.++.|...+++.. .| +-.
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~-----~~P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P------d~~ 427 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAY-----NAPGN-QGLRIDYASVLQARGWPRAAENELKKAEVLEP------RNI 427 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCh
Confidence 3456666777777888877765533322 23333 3456667789999999999999997653 34 345
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~ 129 (231)
.++|..|..++-.++|.+|...+..++..-|.+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 5889999999999999999999999999999863
No 69
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.37 E-value=2 Score=25.74 Aligned_cols=27 Identities=37% Similarity=0.315 Sum_probs=22.5
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 99 FYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 99 YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
..+|.++.-+++|++|.+++++|+..+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999977443
No 70
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=83.14 E-value=15 Score=26.64 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCChhh-hhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHH
Q psy9817 111 YSTAHKNLVQALRKAPQTA-AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLT 189 (231)
Q Consensus 111 y~~A~~~L~~A~~~~p~~~-~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~ 189 (231)
+.++...|..++-.+..+. .....+.+...+-+.....+. . ..........+.+|++|++.||..+..+++.
T Consensus 48 ~~~~~~~fh~~l~~~~~N~~l~~~~~~l~~~~~~~~~~~~~--~-----~~~~~~~~~~h~~i~~ai~~~d~~~a~~~~~ 120 (125)
T PF07729_consen 48 FIEADIEFHRALAEASGNPYLIQILERLRDRLQRFRYLSIR--S-----KEDLERSLEEHREIIDAIRAGDPEAAREALR 120 (125)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCC--H-----HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhh--h-----hhhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6667777777776655442 122222222222222222222 1 1222344456899999999999999999998
Q ss_pred Hc
Q psy9817 190 TY 191 (231)
Q Consensus 190 ~~ 191 (231)
.|
T Consensus 121 ~h 122 (125)
T PF07729_consen 121 QH 122 (125)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=82.61 E-value=18 Score=32.07 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHH
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARF 97 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y 97 (231)
....+.+++..++.++....+-..+. ...+. ......+-.+|...|.++.|...+.+.. .|. +....+..
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~--~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~ 188 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALE----LNPDD--AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHN 188 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC--cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHH
Confidence 34455566666666665544422222 22111 2334556788889999999999986542 122 12233456
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
++.+|++++.+|++.+|...+..+...-|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 67899999999999999999999975444
No 72
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=82.45 E-value=4.3 Score=29.47 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-..+++.++++.|...+.... .|+. .....-+|..|+++.-.++|.+|...+..++...|.+
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 3456788899999998885542 3431 1223446789999999999999999999999988864
No 73
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=82.42 E-value=2.9 Score=32.79 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVV 143 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~ 143 (231)
-+|--.+.+|++.+|-.||..|+.-||++ +....|+..-+|
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP---~~LL~i~q~tlP 108 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP---AELLQIYQKTLP 108 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH---HHHHHHHHHHS-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH---HHHHHHHHhhCC
Confidence 46777888999999999999999999984 455666666666
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=81.74 E-value=3.5 Score=35.76 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.....+..|.+.+.++.+..++.+..- .....+-..+++..|.++.-.|+..+|.+.+..|++..|.+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~ 179 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD 179 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 345567888999999999999866320 11123567889999999999999999999999999999975
No 75
>KOG2076|consensus
Probab=81.55 E-value=70 Score=33.13 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+..+-.||+.+.+||-.|.+++.... .+-.|-+.-.++..-+.+ -..--+.+++++|.-..++.. -|+
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~---~llAAHL~p~d~e~W~~l---adls~~~~~i~qA~~cy~rAI~~~p~--- 239 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNF---WLLAAHLNPKDYELWKRL---ADLSEQLGNINQARYCYSRAIQANPS--- 239 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHH---HHHHHhcCCCChHHHHHH---HHHHHhcccHHHHHHHHHHHHhcCCc---
Confidence 455666788888888877765544332 233342221111221222 222336777888877776553 233
Q ss_pred chhhHHHHhhHHHHHHHh--hcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVR--LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~--~~y~~A~~~L~~A~~~~p~~ 128 (231)
+ +.|+.-|..+.+ |++..|-+.+.+.+..+|+.
T Consensus 240 -n----~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 240 -N----WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred -c----hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 1 445555555555 88888888888888888853
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=80.41 E-value=15 Score=38.88 Aligned_cols=106 Identities=16% Similarity=0.104 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCC--cch------hHHHHHHHHHHHHhcCChhhHHhhhhccC--CC
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND--FEG------QAVLINCLLRNYLHYNLYDQADKLVKKSA--FP 86 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d--~~~------~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p 86 (231)
+.+++-.+.++...++.++.+..+-.+++......+ .|. ...+....-..+++.+.++.|...+.+.. .|
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 445666667776666666666555443322100000 000 01111223456677788888887775442 23
Q ss_pred CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 87 ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 87 ~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+ ...-++.+|.++.-++++.+|.++++.|++..|.+
T Consensus 383 ~------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 383 T------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred C------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 2 22345678999999999999999999999988875
No 77
>KOG2300|consensus
Probab=80.08 E-value=62 Score=31.62 Aligned_cols=144 Identities=19% Similarity=0.094 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCC-Cc--hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhh
Q psy9817 55 GQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENA-SN--NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAV 131 (231)
Q Consensus 55 ~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~-~~--~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~ 131 (231)
-++++.-.+--.|++.+.-+--..+++...-|... .. ....-.+|-.|...+.++++.||...|...+..+. +-
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman---ae 478 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN---AE 478 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc---hh
Confidence 34444334668899999888888888776655322 22 35577889999999999999999999999998774 34
Q ss_pred hHHHHHHHHHHHHHHh---cCC--------CCCHHHhhH----HHHhhcccchHHHHHHHHcCCHHHHHHHHHHcc---h
Q psy9817 132 GFRQTTQKLAVVVELL---LGD--------IPDRQIFRQ----AVLRRALSPYFQLTQAVRMGELQKFNEVLTTYG---N 193 (231)
Q Consensus 132 ~~~~~ilk~lI~v~Ll---lG~--------iP~~~ll~~----~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~---~ 193 (231)
++-+..--.|++.+.+ .|. .|.-++-+. |.--.....|.+|-+|....-...-++...+++ .
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~~ql~Sr 558 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRKHQLQSR 558 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 5555554555554433 443 233322221 111223344677777764411344444444433 3
Q ss_pred hhhhcchH
Q psy9817 194 QFRTDYTF 201 (231)
Q Consensus 194 ~f~~dg~y 201 (231)
....||..
T Consensus 559 ~lla~~~i 566 (629)
T KOG2300|consen 559 LLLADGSI 566 (629)
T ss_pred HHHhccCc
Confidence 55666643
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=80.03 E-value=16 Score=34.28 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+.+++.--+.+++.+.+++|..+..++..- .+.-.+..|+++.+|+..++|++|...| +.||-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaL----Ns~Pm 296 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLAL----NSCPM 296 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHH----hcCcC
Confidence 566777788899999999999998765421 0233556677999999999999998555 46675
No 79
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=79.89 E-value=24 Score=32.67 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=30.3
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHH--HHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLV--QALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~--~A~~~~p~~ 128 (231)
+.++..+|++++-+++|.+|.++|+ .|+...|.+
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 6899999999999999999999999 688777764
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=79.49 E-value=37 Score=34.98 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCChhhHHhhhhccC--CC---------CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSA--FP---------ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~--~p---------~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~ 129 (231)
..|+--|+..+.++.|..++.+.. .| ...+|.++.++....+.+++..+++.+|++.|+.....+|.+.
T Consensus 371 ~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 371 DDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 568999999999999999985431 23 3357889999999999999999999999999999999999863
Q ss_pred hhhHHHHHHHHHHHHHHhcCC-CCCHH--HhhHHHHhhcccc------hHHHHHHHHcCCHHHHHHHHHHcchhhhhcch
Q psy9817 130 AVGFRQTTQKLAVVVELLLGD-IPDRQ--IFRQAVLRRALSP------YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYT 200 (231)
Q Consensus 130 ~~~~~~~ilk~lI~v~LllG~-iP~~~--ll~~~~~~~~L~~------Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~ 200 (231)
.. .+--..+.+.+ -|..+ .++. ...+.| +.....+...|+..+-++.+++-.+.+-+|..
T Consensus 451 ~l--------~~~~A~v~~~Rg~p~~A~~~~k~---a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 451 NL--------RIALASIYLARDLPRKAEQELKA---VESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HH--------HHHHHHHHHhcCCHHHHHHHHHH---HhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 11 11223333322 34432 2221 112222 33444566678888877778777777777775
Q ss_pred HHHHHH
Q psy9817 201 FKLILR 206 (231)
Q Consensus 201 y~Lv~r 206 (231)
..=+.|
T Consensus 520 ~~~l~r 525 (822)
T PRK14574 520 SQELDR 525 (822)
T ss_pred HHHHHH
Confidence 443333
No 81
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=79.44 E-value=18 Score=37.95 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+-.++.+.|.++.|...+.... .|+ ....++-+|.+..-.+++.+|.+++..|+...|.
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPN------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3455666666666666654331 121 2234444455555555555555555555544443
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=79.16 E-value=17 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+.+-..|.+.|.++.|...+.... .|+ ....++.+|.++.-.+++.+|...+..++...|..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPD------LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 34445677777788888877775432 232 22345567888888888888888888888777753
No 83
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=78.18 E-value=9.8 Score=31.83 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCC-----C--------------CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPE-----N--------------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~-----~--------------~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~ 120 (231)
+-+..-.|++.|.++....--....-|. . ..+++-....+.+|++++..+++.+|.+.+..
T Consensus 19 ~~~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~ 98 (198)
T PRK10370 19 VFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQ 98 (198)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445678999999877655442211111 0 11346677899999999999999999999999
Q ss_pred HHHhCChh
Q psy9817 121 ALRKAPQT 128 (231)
Q Consensus 121 A~~~~p~~ 128 (231)
|++..|.+
T Consensus 99 Al~l~P~~ 106 (198)
T PRK10370 99 ALQLRGEN 106 (198)
T ss_pred HHHhCCCC
Confidence 99999975
No 84
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.75 E-value=48 Score=32.87 Aligned_cols=59 Identities=8% Similarity=-0.108 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
+.|.|+..|.+.|.++.|..++....-| +.++|.- +...+.-.+++.+|.+.|....+.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~------~~vt~n~-li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEK------TTVAWNS-MLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCC------ChhHHHH-HHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4588999999999999999999876433 3455443 556677889999999999887653
No 85
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.19 E-value=46 Score=33.00 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
..+.|.|+..|.+.|.++.|..++....-|+ .++|.- +...+.-.+++.+|.+.|....+.-+
T Consensus 158 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~------~~t~n~-li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 158 QYMMNRVLLMHVKCGMLIDARRLFDEMPERN------LASWGT-IIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCC------eeeHHH-HHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999998775443 344433 34455667999999999999886543
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=75.38 E-value=36 Score=26.46 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=33.1
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
.+.+|.+++-+++|.+|.+.|.+++...|.+ ..+..+.-.|.-+.+-.|+...
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~---~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDP---ELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH---HHHHHHHHHHHHHHHHcCCHHH
Confidence 4568888888888888888888888877543 2222232233334444565443
No 87
>KOG1127|consensus
Probab=74.95 E-value=44 Score=35.26 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHhhh-hccCC-CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhh
Q psy9817 55 GQAVLINCLLRNYLHYNLYDQADKLV-KKSAF-PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVG 132 (231)
Q Consensus 55 ~~~~l~N~Llr~Yf~~~~~~~a~~l~-~~~~~-p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~ 132 (231)
|++.-.--+-..|-+.+..++|..+. .+++. |...-..++++ .|.+|+=-++.++|-.+++.|+|..|.+.
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~----rG~yyLea~n~h~aV~~fQsALR~dPkD~--- 596 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ----RGPYYLEAHNLHGAVCEFQSALRTDPKDY--- 596 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh----ccccccCccchhhHHHHHHHHhcCCchhH---
Confidence 33333344456666666666666664 22221 21122235555 99999999999999999999999999863
Q ss_pred HHHHHHHHHHHHH-Hh--cCCCCCH-HHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchH
Q psy9817 133 FRQTTQKLAVVVE-LL--LGDIPDR-QIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF 201 (231)
Q Consensus 133 ~~~~ilk~lI~v~-Ll--lG~iP~~-~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y 201 (231)
..|.-.+ -. -|.+-.. ..|..-..-+.+.-|...-.|+..-|+.+..++++..+....+..++
T Consensus 597 ------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 597 ------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred ------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 1222221 11 3554432 34543222233344888899999999999999998887655444433
No 88
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.43 E-value=25 Score=31.03 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.-+..+++.+.|+.|...+.+- .+|+.. ....=+|++|..+..+++|.+|...|..++..-|.+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3344456668999998888653 356532 223345899999999999999999999999887764
No 89
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.38 E-value=7.4 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=24.1
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
-+.-+|.++.-+++|.+|...+.+|+..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 35568999999999999999999999754
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=74.35 E-value=96 Score=32.03 Aligned_cols=72 Identities=10% Similarity=-0.066 Sum_probs=52.1
Q ss_pred cCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhH--HHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 50 RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYL--GRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 50 r~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~--Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+.++.....+. -++.++...|+.++|...+++...|+.. .|.=.+ |+++..+++|.+|.+.++.++..-|.
T Consensus 62 ~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~------~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 62 KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI------SSRGLASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34454432333 7788888999999999999887754322 223334 77888999999999999999998887
Q ss_pred h
Q psy9817 128 T 128 (231)
Q Consensus 128 ~ 128 (231)
+
T Consensus 135 n 135 (822)
T PRK14574 135 N 135 (822)
T ss_pred C
Confidence 5
No 91
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.96 E-value=62 Score=28.48 Aligned_cols=106 Identities=14% Similarity=0.062 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhh-cccHHHHHHHHHHHHHHHhhcCCcchhHHHH-HHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 16 AAKCYFYHSRVHEL-TNNLDKVRSFLNARLRIATLRNDFEGQAVLI-NCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 16 ~ak~~~y~~~~~e~-~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~-N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
..+.+|..+...-+ .++.+.....+-..++ +..+...+.-+ =.+=..|+..+.++.|...+.+.. +|+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVK----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---
Confidence 35778888776533 3455655554322221 22222221222 245688999999999999997653 6653
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+....-+|.+|.++.-.+++.+|...|+..+..-|.+
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3344557889999999999999999999999988874
No 92
>KOG2002|consensus
Probab=73.94 E-value=1.2e+02 Score=31.83 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.|.|-..||--++|+.|-.+-.+..-- ....+...+=+|.+||-+=.+|+|.+|...+.+|....|.+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~-t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKN-TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 66788888888889998888876433210 01224667889999999999999999999999999766654
No 93
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=73.79 E-value=13 Score=25.00 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=34.8
Q ss_pred chH-HHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHHH
Q psy9817 168 PYF-QLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRHN 210 (231)
Q Consensus 168 ~Y~-~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~~ 210 (231)
+|. +|-+|+-+||+.........-+..+...|..- .++.|+.=
T Consensus 2 lYgvaiq~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~E 46 (53)
T PF08898_consen 2 LYGVAIQQAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAE 46 (53)
T ss_pred CchHHHHHHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 355 78899999999999999999998888877664 77777653
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=73.76 E-value=69 Score=34.04 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+-..|.+.+.++.|...+.+.. .|+ -..-++.+|+++.-.+++.+|.+.+..+....|.
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 3445556666666655554331 122 1223445555555555666666555555554443
No 95
>PLN03077 Protein ECB2; Provisional
Probab=73.49 E-value=56 Score=33.26 Aligned_cols=60 Identities=8% Similarity=-0.004 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
.+.|.|+..|.+.+.++.|..++....-|+ .++|.-.. ..+.-.+++.+|.+.|....+.
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d------~~s~n~li-~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRD------CISWNAMI-SGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCC------cchhHHHH-HHHHhCCCHHHHHHHHHHHHHc
Confidence 457889999999999999999998775443 34433322 2345678899999999887764
No 96
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=72.88 E-value=25 Score=33.68 Aligned_cols=38 Identities=18% Similarity=0.059 Sum_probs=31.3
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++....++-+|..+.-.++|.+|..+++.|+...|.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ 108 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP 108 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Confidence 45777888888888888888888888888888888864
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=72.73 E-value=4.4 Score=26.84 Aligned_cols=49 Identities=20% Similarity=0.216 Sum_probs=34.6
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 99 FYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 99 YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
|=.|+.++-+++|.+|..+++++++.-|.+. . ++..+--+-.-+|+.+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~-----a~~~lg~~~~~~g~~~~ 49 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP-E-----AWYLLGRILYQQGRYDE 49 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH-H-----HHHHHHHHHHHTT-HHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-H-----HHHHHHHHHHHcCCHHH
Confidence 4479999999999999999999999888642 1 23333444445666544
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=72.42 E-value=14 Score=33.78 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 65 RNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 65 r~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...|..+.++.|...+.+.. .| +-..+++..|.+++-.++|.+|...+..|+...|.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 56778899999998886653 23 235678999999999999999999999999999875
No 99
>KOG1840|consensus
Probab=72.31 E-value=37 Score=32.99 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCC--cchhHHHHHHHHHHHHhcCChhhHHhhhh--ccCCCCCC
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND--FEGQAVLINCLLRNYLHYNLYDQADKLVK--KSAFPENA 89 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d--~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~--~~~~p~~~ 89 (231)
.-.||++==+++.+.+.++.++.....-+++.......+ ..+....+|.|=..|-+.+.++-|..++. +...+...
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 467888888999999999999888777666655533333 34456678888899999999998888873 33334444
Q ss_pred CchhhHHHHhh-HHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 90 SNNEWARFHFY-LGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 90 ~~~~~v~Y~YY-~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
+..+-++|-|- +|.+|--+|+|++|.+....+.+
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 55566777664 78888999999999999999885
No 100
>KOG0547|consensus
Probab=72.18 E-value=35 Score=33.23 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~ 89 (231)
+|+=.+-+||.-+-+.=++++.++.....-.+. +-|++.....+-+.+-.| +.+.++.|.+.|+.+ .||+-
T Consensus 389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai-----~L~pe~~~~~iQl~~a~Y-r~~k~~~~m~~Fee~kkkFP~~- 461 (606)
T KOG0547|consen 389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI-----SLDPENAYAYIQLCCALY-RQHKIAESMKTFEEAKKKFPNC- 461 (606)
T ss_pred cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh-----hcChhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCC-
Confidence 445555667777777767777776666654443 456777767776666677 667899999999644 57752
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh--hhhhHHHHHHHHHHHHH
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT--AAVGFRQTTQKLAVVVE 145 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~--~~~~~~~~ilk~lI~v~ 145 (231)
++. | =|-|-+...|.+|.+|.+.+..|++..|.. .-.+-.-.|.|-+++.+
T Consensus 462 --~Ev--y-~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 462 --PEV--Y-NLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred --chH--H-HHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 222 2 245788999999999999999999999972 11233445556655554
No 101
>KOG1840|consensus
Probab=70.74 E-value=1e+02 Score=30.10 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC--CcchhHHHHHHHHHHHHhcCChhhHHhhhhcc-CCCC--
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN--DFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPE-- 87 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~--d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~-~~p~-- 87 (231)
|+-...+.-+.+..+...+++++..+..=.+++..+-+. +.--.+...|.+=..|...++++.|.+++.++ +.++
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 334444555678888888888877776666666654332 23345666788889999999999999999654 1121
Q ss_pred C-CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh--hhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 88 N-ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT--AAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 88 ~-~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~--~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
. ......+..+-=+|..|--+++|.+|..++..|++..-.. ...+-....+.-++.+-..+|+.-..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea 344 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA 344 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence 1 1346788888889999999999999999999999843221 11222333344445555556665443
No 102
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=70.63 E-value=29 Score=36.51 Aligned_cols=57 Identities=7% Similarity=-0.111 Sum_probs=36.7
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHH
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQ 155 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ 155 (231)
-++.|+|-.|+.+..+|+|.+|++.|..|++..|.+. . +...+.-.-+-+|+.+...
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~-~-----~~~~LA~~yl~~g~~~~A~ 98 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNI-P-----LTLYLAEAYRHFGHDDRAR 98 (987)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-H-----HHHHHHHHHHHCCCHHHHH
Confidence 4567777778888888888888888888888877642 1 2222233334467766553
No 103
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.76 E-value=61 Score=26.66 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=50.1
Q ss_pred HHHHHHHhcCChhhHHhhhhccC-CCCCC-CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA-FPENA-SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~-~p~~~-~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
.++++.+-.+++....+.+.+.. .++.. ...-..+..=|.|..++.+++|.+|-+.|..+...-
T Consensus 78 ~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 78 NVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 45799999999999999987653 23321 224556789999999999999999999999887543
No 104
>KOG0543|consensus
Probab=69.18 E-value=23 Score=33.33 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~ 129 (231)
+.|--+|++++.|..|-.--++.- +..++|.-+ +|=-|+.++..++|+.|...|+.|+..-|.+.
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvL--e~~~~N~KA--LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVL--ELDPNNVKA--LYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHH--hcCCCchhH--HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 456788999999987655443321 112234444 45589999999999999999999999999874
No 105
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.07 E-value=76 Score=27.42 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=48.9
Q ss_pred HHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-..+++.++++.|...++.. ..|.. +..+.+ .|.+|..+.-+++|.+|...++..++.-|.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a--~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQV--QLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC
Confidence 35567899999999998653 34542 333444 6799999999999999999999999988875
No 106
>KOG1173|consensus
Probab=69.01 E-value=22 Score=34.91 Aligned_cols=125 Identities=18% Similarity=0.053 Sum_probs=79.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhh--cCCcchhHHHHHHHHHHHHhcCChhhHHhhhhc--cC
Q psy9817 9 RRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATL--RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK--SA 84 (231)
Q Consensus 9 ~r~~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~l--r~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~--~~ 84 (231)
-.++|.--|..|-+|+-++-..+.= +.-|+++.||.- .+.-....++ =--|.+.|++.+|+.++.. ..
T Consensus 338 at~lD~~fgpaWl~fghsfa~e~Eh----dQAmaaY~tAarl~~G~hlP~LYl----gmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 338 ATTLDPTFGPAWLAFGHSFAGEGEH----DQAMAAYFTAARLMPGCHLPSLYL----GMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HhhcCccccHHHHHHhHHhhhcchH----HHHHHHHHHHHHhccCCcchHHHH----HHHHHHhccHHHHHHHHHHHHhc
Confidence 3467877777777777666443321 344566776643 2221111111 1357889999999999954 45
Q ss_pred CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 85 FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 85 ~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
.|. +.+..+ ++|.++.-.++|.+|..+|+.|+...+.. .+. .+ .|.|....+|.+-.
T Consensus 410 ~P~-----Dplv~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~---~~e-~~--~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 410 APS-----DPLVLH-ELGVVAYTYEEYPEALKYFQKALEVIKSV---LNE-KI--FWEPTLNNLGHAYR 466 (611)
T ss_pred CCC-----cchhhh-hhhheeehHhhhHHHHHHHHHHHHHhhhc---ccc-cc--chhHHHHhHHHHHH
Confidence 564 333333 57899999999999999999999665542 111 11 67887777776433
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=68.90 E-value=33 Score=30.28 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
....+-..+...|.++.|...+.+.. -|+ .......+|.++.-.+++.+|..++..++...|.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~------~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD------DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 34444566777777777777775442 132 1445566788888888888888888888876653
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=68.69 E-value=16 Score=29.95 Aligned_cols=103 Identities=11% Similarity=-0.027 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhc
Q psy9817 31 NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLE 110 (231)
Q Consensus 31 ~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~ 110 (231)
+++++.... ++..| .-|++-.....|+ =-+|-..+.++.|-...+....-+ .+--+-.||.|..++.-++
T Consensus 49 G~l~~A~~~----f~~L~-~~Dp~~~~y~~gL-G~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 49 KEFAGAARL----FQLLT-IYDAWSFDYWFRL-GECCQAQKHWGEAIYAYGRAAQIK----IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred CCHHHHHHH----HHHHH-HhCcccHHHHHHH-HHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHcCC
Confidence 355655532 23333 3344444444443 234556677777777765432100 1223557899999999999
Q ss_pred HHHHHHHHHHHHHhCChh-hhhhHHHHHHHHHHH
Q psy9817 111 YSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVV 143 (231)
Q Consensus 111 y~~A~~~L~~A~~~~p~~-~~~~~~~~ilk~lI~ 143 (231)
..+|...|..|+..|..+ .....++++..+|-.
T Consensus 119 ~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~ 152 (157)
T PRK15363 119 VCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQ 152 (157)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHH
Confidence 999999999999999432 123455666555543
No 109
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.70 E-value=7.2 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.2
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLV 119 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~ 119 (231)
..+.+|+.+.-+|+..+|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998875
No 110
>KOG4234|consensus
Probab=67.65 E-value=19 Score=31.36 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=53.1
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHh-cCCCCCHHHhhHHHHhhcccc-hH-HHHH-H
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELL-LGDIPDRQIFRQAVLRRALSP-YF-QLTQ-A 175 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~Ll-lG~iP~~~ll~~~~~~~~L~~-Y~-~L~~-A 175 (231)
=-|--.+.+|+|.+|...++.|+..||... .-.+.|+---=-+-++ +|+--+ ......=.-.|.| |. .|.+ |
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~--~e~rsIly~Nraaa~iKl~k~e~--aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTS--TEERSILYSNRAAALIKLRKWES--AIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcccc--HHHHHHHHhhhHHHHHHhhhHHH--HHHHHHhhHhcCchhHHHHHHHH
Confidence 346677899999999999999999999732 2122221111112122 232111 0010000112223 32 3333 4
Q ss_pred HHcCCHHHHHHHHHHcchhhhhcch
Q psy9817 176 VRMGELQKFNEVLTTYGNQFRTDYT 200 (231)
Q Consensus 176 Vr~Gdl~~F~~~l~~~~~~f~~dg~ 200 (231)
----++.+|+.+++.+......|--
T Consensus 176 eayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 4445678999999999887777654
No 111
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=67.05 E-value=95 Score=28.87 Aligned_cols=138 Identities=18% Similarity=0.130 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChhhHHhhhhcc-CCCCCCC----------------------------------chhhHHHHhhHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKS-AFPENAS----------------------------------NNEWARFHFYLGRI 104 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~-~~p~~~~----------------------------------~~~~v~Y~YY~Gri 104 (231)
+-.|=+.|...|.+|-|+.++..- ..|+++. +-+.+.|+-=++.-
T Consensus 110 l~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 110 LQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 346789999999999999998422 2233211 12778888889999
Q ss_pred HHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHh----hH-HHHhhcccchHHHHHHHHc
Q psy9817 105 KAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIF----RQ-AVLRRALSPYFQLTQAVRM 178 (231)
Q Consensus 105 ~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll----~~-~~~~~~L~~Y~~L~~AVr~ 178 (231)
++...+.+.|.+.|..|+.-.|..+ . +...+-=|.+-.|+.|.. ..+ +| |.+-... -..|..|...
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cv-R-----Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev--l~~L~~~Y~~ 261 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCV-R-----ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV--LEMLYECYAQ 261 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccce-e-----hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHH
Confidence 9999999999999999997766531 2 233344466677887754 223 22 3222111 2356677755
Q ss_pred -CCHHHHHHHHHHcchhhhhcchHHHHH
Q psy9817 179 -GELQKFNEVLTTYGNQFRTDYTFKLIL 205 (231)
Q Consensus 179 -Gdl~~F~~~l~~~~~~f~~dg~y~Lv~ 205 (231)
|+.+.+..++....+.+.-...-+.+-
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~~l~l~ 289 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADAELMLA 289 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccHHHHHH
Confidence 999999999988877776655544433
No 112
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=64.39 E-value=58 Score=31.64 Aligned_cols=57 Identities=18% Similarity=0.075 Sum_probs=45.4
Q ss_pred HHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 67 YLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 67 Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....|+++.|..-+.+..--+ + -+..+.++|+++..+|++.+|.+.+..|++..|..
T Consensus 430 ~~~~g~~~~A~~~l~rAl~L~--p---s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 430 ALVKGKTDEAYQAINKAIDLE--M---SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHhcCCHHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 334589999999987653211 1 25688999999999999999999999999999874
No 113
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=63.56 E-value=25 Score=33.56 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=50.7
Q ss_pred cCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHh
Q psy9817 70 YNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELL 147 (231)
Q Consensus 70 ~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~Ll 147 (231)
-...+.|+.++... .+| +-+-|+++.||++..+++..+|.+.|+.|+...+. ...+...++-=+.-+.++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~ 317 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYP------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMF 317 (468)
T ss_pred CCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHH
Confidence 34567788888543 455 46889999999999999999999999999943222 222232232223334555
Q ss_pred cCCCCCH
Q psy9817 148 LGDIPDR 154 (231)
Q Consensus 148 lG~iP~~ 154 (231)
+++.+..
T Consensus 318 ~~~w~~A 324 (468)
T PF10300_consen 318 QHDWEEA 324 (468)
T ss_pred HchHHHH
Confidence 6665543
No 114
>PLN03077 Protein ECB2; Provisional
Probab=62.99 E-value=1.1e+02 Score=31.07 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
..+.|.|+..|.+.|.++.|..+++...-|+ .++|.- +...+.-.+++.+|.+.|......
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d------~~s~n~-li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKD------AVSWTA-MISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC------eeeHHH-HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999998776553 233332 345566788999999999876543
No 115
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=61.94 E-value=20 Score=34.37 Aligned_cols=63 Identities=19% Similarity=0.019 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
..|.+=-.|++.+.|+.|-..++... .|++ .+.---+|.+|-.+..++++++|.++|..|++.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555678899999999999997642 2431 111133699999999999999999999999985
No 116
>KOG1156|consensus
Probab=61.32 E-value=42 Score=33.57 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=33.8
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....+.=.||+..=+-..++|+.|.+.++-|+.+||.-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTl 404 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTL 404 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchH
Confidence 35777778899999999999999999999999999963
No 117
>KOG2076|consensus
Probab=61.31 E-value=39 Score=34.90 Aligned_cols=63 Identities=21% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChhhHHhhhhccC-CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA-FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~-~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+-+.|...+.|+.|-++++... .|. .+-.-+.|=.|++++-.++|.+|.+++..++...|.+
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~----~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREG----YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCcc----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 34577888999999999986543 222 3336678889999999999999999999999999985
No 118
>PF07579 DUF1548: Domain of Unknown Function (DUF1548); InterPro: IPR013044 This domain is found in a small number of Chlamydia proteins of unknown function. It occurs together with IPR011436 from INTERPRO.
Probab=60.65 E-value=53 Score=26.26 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=58.9
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhh-hccCC-CCCCCchhhHHHHh
Q psy9817 22 YHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLV-KKSAF-PENASNNEWARFHF 99 (231)
Q Consensus 22 y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~-~~~~~-p~~~~~~~~v~Y~Y 99 (231)
|.....+|++.-.+-.+.|+++.+-+.+-.+++.++.+.|-+|...=.+|.|+.+..-+ ...=+ ++..++.+-+.|.-
T Consensus 50 Y~~l~~~F~~~Y~~S~~~LI~~i~~q~~~sspe~~~~i~~yll~~l~~l~lPe~~~~~v~~~~Fydenyel~~egI~yLL 129 (135)
T PF07579_consen 50 YDRLFNQFLNAYRNSGSNLINYILNQILTSSPEQKAAIRNYLLDDLNALNLPETAHSDVMSELFYDENYELNREGIAYLL 129 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccccCcCHHHHHHHH
Confidence 44555667666666678888988888889999999999999998888899999866444 32222 22346688888876
Q ss_pred hH
Q psy9817 100 YL 101 (231)
Q Consensus 100 Y~ 101 (231)
|.
T Consensus 130 l~ 131 (135)
T PF07579_consen 130 LK 131 (135)
T ss_pred HH
Confidence 64
No 119
>KOG4626|consensus
Probab=60.57 E-value=49 Score=33.41 Aligned_cols=63 Identities=29% Similarity=0.261 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
-.|.|-.+|-..+.++.|..+..++ .+|+++ .=+=-+|-++=-||++++|-.|+..|++..|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~a------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFA------AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhh------hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 3567788999999999999999775 456643 22234688888999999999999999999885
No 120
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=59.66 E-value=37 Score=21.86 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcchhhhhcch
Q psy9817 170 FQLTQAVRMGELQKFNEVLTTYGNQFRTDYT 200 (231)
Q Consensus 170 ~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~ 200 (231)
..|.++|..||+..--++++.+.....+++.
T Consensus 6 ~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~ 36 (58)
T smart00668 6 KRIRELILKGDWDEALEWLSSLKPPLLERNS 36 (58)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHhccCC
Confidence 4688999999999999999999887776664
No 121
>KOG2002|consensus
Probab=59.35 E-value=1.9e+02 Score=30.52 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=73.1
Q ss_pred cccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHH
Q psy9817 30 TNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAV 107 (231)
Q Consensus 30 ~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~ 107 (231)
.++++..+. +|+..|.+.. .+.+ +.+|+ -.+|+..++|..|-...+++. |-+ ...+.=.=|+||.+.-
T Consensus 659 kg~~~~A~d-IFsqVrEa~~-~~~d---v~lNl-ah~~~e~~qy~~AIqmYe~~lkkf~~----~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 659 KGRFSEARD-IFSQVREATS-DFED---VWLNL-AHCYVEQGQYRLAIQMYENCLKKFYK----KNRSEVLHYLARAWYE 728 (1018)
T ss_pred ccCchHHHH-HHHHHHHHHh-hCCc---eeeeH-HHHHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHH
Confidence 445666665 4466666643 1222 23443 566888888888877776542 211 2345556689999999
Q ss_pred hhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 108 RLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 108 ~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
.+.|.+|-+.+..|.+..|.++...|-..+.-.=+--+.+.++-|+.
T Consensus 729 ~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred hhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 99999999999999999999865554333333334444555554544
No 122
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=59.08 E-value=19 Score=29.32 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=30.6
Q ss_pred HHHHHHHhh-cHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Q psy9817 101 LGRIKAVRL-EYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVV 143 (231)
Q Consensus 101 ~Gri~~~~~-~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~ 143 (231)
+|--.+.++ +..+|-.||..|+.-||++ +-...|+.--+|
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~qP---~~LL~iyq~tlP 136 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQP---QQLLSIYQQTLP 136 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCCH---HHHHHHHHhhCC
Confidence 566677788 9999999999999999985 444445555555
No 123
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=58.56 E-value=9 Score=26.86 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=34.1
Q ss_pred cCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHH
Q psy9817 70 YNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120 (231)
Q Consensus 70 ~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~ 120 (231)
.++|+.|..++.+.. -|. +.-..|.|.+|.+++-.++|.+|.+.++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT----NPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG----THHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC----ChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 366777777775431 121 12455888899999999999999999988
No 124
>KOG3364|consensus
Probab=58.42 E-value=30 Score=28.00 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=39.0
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh-hhhhHHHHHHH
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTTQK 139 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~~~~~~~ilk 139 (231)
.+.-.|.||++.-+.=-++|+.|...+...+++-|++ .+..-++.|.+
T Consensus 68 ~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 68 ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 4778999999999999999999999999999998875 33444444433
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=57.75 E-value=87 Score=24.22 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~ 94 (231)
+++.|..+.++...|+-+...+..-.++... -.++...-.++ .+-..|-.+|.++.|..++++. .+|+.. .+..
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~~~~a~i-~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~ 76 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAG--LSGADRRRALI-QLASTLRNLGRYDEALALLEEALEEFPDDE-LNAA 76 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHH
Confidence 4678999999999999888887664444311 11222233333 3567888999999999999754 456422 2344
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKL 140 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~ 140 (231)
++ +..+....-.++..+|...+-.++-.. .+..++.|.-|
T Consensus 77 l~--~f~Al~L~~~gr~~eAl~~~l~~la~~----~~~y~ra~~~y 116 (120)
T PF12688_consen 77 LR--VFLALALYNLGRPKEALEWLLEALAET----LPRYRRAIRFY 116 (120)
T ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 44 456778888899999999999888432 24555555443
No 126
>KOG3081|consensus
Probab=56.48 E-value=61 Score=29.21 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=52.6
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH--HHhhHHHHhhcccchHHHHHHHHcC
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR--QIFRQAVLRRALSPYFQLTQAVRMG 179 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~--~ll~~~~~~~~L~~Y~~L~~AVr~G 179 (231)
+-+.+.+++|.+|+..|..|+.+=|.. -..+.=+|+..+++|+-|+- ..+.| + +...|=.+++.-...-
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~~~r~l~Q--L-k~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAEVTERNLSQ--L-KLSHPEHPFVKHLNEK 284 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHHHHHHHHH--H-HhcCCcchHHHHHHHH
Confidence 457789999999999999999886653 23466788999999986543 22332 1 1223434555555433
Q ss_pred CHHHHHHHHHHc
Q psy9817 180 ELQKFNEVLTTY 191 (231)
Q Consensus 180 dl~~F~~~l~~~ 191 (231)
+ ++|+..+.++
T Consensus 285 e-aeFDrl~~qy 295 (299)
T KOG3081|consen 285 E-AEFDRLVLQY 295 (299)
T ss_pred H-HHHHHHHHHh
Confidence 3 5677766654
No 127
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=56.12 E-value=1.4e+02 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=32.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-...++..|++++-+++|.+|.++|+.++...|.+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 446789999999999999999999999999988874
No 128
>PF12854 PPR_1: PPR repeat
Probab=55.49 E-value=22 Score=20.97 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
++-|.|+..|.+.|..+.|..+++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56789999999999999999998754
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=55.26 E-value=42 Score=35.00 Aligned_cols=119 Identities=17% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHhhcCCcchhHHHHH----------HHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHH
Q psy9817 46 IATLRNDFEGQAVLIN----------CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAH 115 (231)
Q Consensus 46 ~~~lr~d~~~~~~l~N----------~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~ 115 (231)
+..+..+.|+.+.+.| .|+..|...|.++.+..+.....-.. +..++++||.|.++.-.+++.+|-
T Consensus 10 ~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~----P~~i~~yy~~G~l~~q~~~~~~~~ 85 (906)
T PRK14720 10 TSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH----KKSISALYISGILSLSRRPLNDSN 85 (906)
T ss_pred HHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CcceehHHHHHHHHHhhcchhhhh
Q ss_pred HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHh--cCCCCCHHHhhHHHHhhcccchHHHHHHHHc-CCHHHHHHHHHH
Q psy9817 116 KNLVQALRKAPQTAAVGFRQTTQKLAVVVELL--LGDIPDRQIFRQAVLRRALSPYFQLTQAVRM-GELQKFNEVLTT 190 (231)
Q Consensus 116 ~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~Ll--lG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~-Gdl~~F~~~l~~ 190 (231)
.- .++..-+.+. ++-++.-+. +|++|+-...- +.++.|.+. |+..+-.++.++
T Consensus 86 lv--~~l~~~~~~~---------~~~~ve~~~~~i~~~~~~k~Al-----------~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 86 LL--NLIDSFSQNL---------KWAIVEHICDKILLYGENKLAL-----------RTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred hh--hhhhhccccc---------chhHHHHHHHHHHhhhhhhHHH-----------HHHHHHHHHcCChHHHHHHHHH
No 130
>PRK15331 chaperone protein SicA; Provisional
Probab=55.25 E-value=35 Score=28.26 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=28.6
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHH
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAV 142 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI 142 (231)
.||.|-.++..++-.+|..+|..|+.+ |.+ ..-++++..+|-
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~-~~~--~~l~~~A~~~L~ 149 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNER-TED--ESLRAKALVYLE 149 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhC-cch--HHHHHHHHHHHH
Confidence 678888888888888888888888875 332 334444544443
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=54.49 E-value=38 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.9
Q ss_pred HHhhcHHHHHHHHHHHHHhCChh
Q psy9817 106 AVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 106 ~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-+++|.+|.+.|+.++...|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~ 24 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN 24 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS
T ss_pred hhccCHHHHHHHHHHHHHHCCCC
Confidence 56899999999999999999975
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=52.98 E-value=69 Score=31.20 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+...|-..|-+.|+++.|-..++++.-- ++-.+.+++..|||+-=.|++.+|.+.+..|=..=++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h----tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH----TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 3455667888999999999998765321 1346889999999999999999999999998876554
No 133
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=52.86 E-value=45 Score=23.93 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChh-hhhhHHHHHHHHHHHHHHhcCCCC
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~~~~~~~ilk~lI~v~LllG~iP 152 (231)
|++.-..-.|++|-+.|.++++..|.+ +...+++.|..|.==++-|.-.+|
T Consensus 20 gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v~ 71 (75)
T cd02682 20 GNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQNP 71 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 444444456788888888888888876 334567888877766665554444
No 134
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.54 E-value=1.3e+02 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.3
Q ss_pred HHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHHH
Q psy9817 172 LTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRHN 210 (231)
Q Consensus 172 L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~~ 210 (231)
|+.+|..||...|....++|+....+|..|. .++++-+.
T Consensus 198 Ll~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~ 237 (260)
T PF04190_consen 198 LLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQL 237 (260)
T ss_dssp HHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHH
Confidence 6779999999999999999999988886664 77776654
No 135
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=52.20 E-value=9.2 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 204 ILRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 204 v~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
++.+...+.+..+..+...|++|++++|
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i 30 (88)
T smart00088 3 VERLQRKIRLTNLLQLSEPYSSISLSDL 30 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHH
Confidence 5677778888888888999999998764
No 136
>smart00753 PAM PCI/PINT associated module.
Probab=52.20 E-value=9.2 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 204 ILRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 204 v~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
++.+...+.+..+..+...|++|++++|
T Consensus 3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i 30 (88)
T smart00753 3 VERLQRKIRLTNLLQLSEPYSSISLSDL 30 (88)
T ss_pred HHHHHHHHHHHHHHHHhHHhceeeHHHH
Confidence 5677778888888888999999998764
No 137
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=51.26 E-value=26 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
-+|-+.+-.++|.+|.+.+..|+..
T Consensus 6 ~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 6 LLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3788999999999999999999863
No 138
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=50.89 E-value=13 Score=20.41 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
+-|.+++.|.+.+.++.|..++...
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH
Confidence 4588999999999999999998643
No 139
>KOG1173|consensus
Probab=50.58 E-value=2.3e+02 Score=28.16 Aligned_cols=78 Identities=24% Similarity=0.221 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk 139 (231)
.|.|=..|=+.|.++.|-....+.-.- .++-++++==.|-+|...|++..|-++|..|+-..|.+ -+-..+|+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l----~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n---~~~~~lL~ 530 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL----SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN---IFISELLK 530 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc----CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc---HHHHHHHH
Confidence 555666777777777777666544211 12345555567888999999999999999999888874 34455666
Q ss_pred HHHHH
Q psy9817 140 LAVVV 144 (231)
Q Consensus 140 ~lI~v 144 (231)
..|=-
T Consensus 531 ~aie~ 535 (611)
T KOG1173|consen 531 LAIED 535 (611)
T ss_pred HHHHh
Confidence 65554
No 140
>KOG4555|consensus
Probab=49.56 E-value=30 Score=28.15 Aligned_cols=47 Identities=21% Similarity=0.031 Sum_probs=35.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh-hhhhHHHHHHH
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTTQK 139 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~~~~~~~ilk 139 (231)
+..+=+=..|...+--++.++|.+.|.+|+..||.. ++..|+-..+.
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R 88 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALR 88 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHH
Confidence 344445567888888999999999999999999985 44555555544
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.99 E-value=22 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhhHHhhhhcc---C-----------C-CCCC-C-----------chhhHHHHhhHHHHHHHhhcHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKS---A-----------F-PENA-S-----------NNEWARFHFYLGRIKAVRLEYS 112 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~---~-----------~-p~~~-~-----------~~~~v~Y~YY~Gri~~~~~~y~ 112 (231)
.-.+.--+.++|..+.|..++..+ . . |... + -++.---++++|++++-++.|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 445556678999999999988321 0 0 1110 0 0122366899999999999999
Q ss_pred HHHHHHHHHHHhCChh
Q psy9817 113 TAHKNLVQALRKAPQT 128 (231)
Q Consensus 113 ~A~~~L~~A~~~~p~~ 128 (231)
+|.++|..|+..-|..
T Consensus 346 kA~~~leaAl~~~~s~ 361 (400)
T COG3071 346 KASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHHHHHhcCCCh
Confidence 9999999999887763
No 142
>KOG1126|consensus
Probab=47.25 E-value=1.3e+02 Score=30.12 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHH
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARF 97 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y 97 (231)
|-|-=.=||+.. .+=-++=+.++|.|.. -|+.---..- -|=-+|.|..+++.|+-.+.++. .|. -..=
T Consensus 456 YayTLlGhE~~~--~ee~d~a~~~fr~Al~-~~~rhYnAwY-GlG~vy~Kqek~e~Ae~~fqkA~~INP~------nsvi 525 (638)
T KOG1126|consen 456 YAYTLLGHESIA--TEEFDKAMKSFRKALG-VDPRHYNAWY-GLGTVYLKQEKLEFAEFHFQKAVEINPS------NSVI 525 (638)
T ss_pred hhhhhcCChhhh--hHHHHhHHHHHHhhhc-CCchhhHHHH-hhhhheeccchhhHHHHHHHhhhcCCcc------chhH
Confidence 444444566643 2223445577776633 2221000011 11235777777777777776552 232 2223
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVG 132 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~ 132 (231)
.-+.|+++.-.++.++|.+.++.|+..=|.+...+
T Consensus 526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 34567777777777777777777776555543333
No 143
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=46.69 E-value=15 Score=21.67 Aligned_cols=23 Identities=17% Similarity=0.019 Sum_probs=19.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHH
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAH 115 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~ 115 (231)
.-+.-++.+|.++..+|++.+|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34667889999999999999986
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=46.42 E-value=26 Score=19.62 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhc
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKK 82 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~ 82 (231)
.-|.+++.|.+.+.++.|..+++.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 468899999999999999999854
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=45.97 E-value=24 Score=31.74 Aligned_cols=38 Identities=29% Similarity=0.027 Sum_probs=34.0
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+++-++=...+|++|+-++++++|..-+.+|.+..|.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n 189 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN 189 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence 34556777899999999999999999999999999986
No 146
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.17 E-value=80 Score=23.04 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=28.7
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
=+.-+|-++..++..|+|.+|.+.|...++.-+..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 35778889999999999999999999999887653
No 147
>KOG1126|consensus
Probab=45.04 E-value=2e+02 Score=28.84 Aligned_cols=104 Identities=17% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCC--CCC--------
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAF--PEN-------- 88 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~--p~~-------- 88 (231)
+||=.+-+|-+.++++..--.+ +-| ..-.-.-.+++.++-++|.+.+..+.|--+++++.. |.+
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~f----qkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHF----QKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred HHHhhhhheeccchhhHHHHHH----Hhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4777777776666655443222 222 122223345566666777777777777766654321 110
Q ss_pred --------------------CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 89 --------------------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 89 --------------------~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++-..=+|.+|++|-.-++...|..++.||++.-|..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 0001233445666666666666666666666666666653
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=43.17 E-value=27 Score=19.27 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCChhhHHhhhhc
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKK 82 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~ 82 (231)
-|.+++.|.+.+.++.|..++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 58899999999999999999854
No 149
>PF13041 PPR_2: PPR repeat family
Probab=42.93 E-value=31 Score=21.68 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
+.-|.++..|.+.|+++.|..+++..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEM 29 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 45789999999999999999999643
No 150
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.35 E-value=51 Score=24.54 Aligned_cols=31 Identities=23% Similarity=0.095 Sum_probs=28.5
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
+.++=+|.-|+.+.-.|++..|+.++++|.-
T Consensus 39 ~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g 69 (90)
T COG1849 39 DMAESYFEDAKYFLEKGDYVTAFAALSYAHG 69 (90)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 7788889999999999999999999999974
No 151
>PHA02608 67 prohead core protein; Provisional
Probab=41.00 E-value=89 Score=22.63 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHH
Q psy9817 170 FQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKT 214 (231)
Q Consensus 170 ~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~ 214 (231)
..|+.||++|||..-.+.... -+...|--|++..|.-.-|+
T Consensus 2 e~lIeAIKS~DLV~akK~F~~----~Me~rt~~li~e~k~eIA~s 42 (80)
T PHA02608 2 EDLIEAIKSGDLVEAKKEFAS----IMEARTEALIEEEKVEIARS 42 (80)
T ss_pred hHHHHHHhcCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 368999999998766555442 23345556666665544443
No 152
>PRK03837 transcriptional regulator NanR; Provisional
Probab=40.69 E-value=1.5e+02 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.5
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....+++|++.||..+..+++..|-.
T Consensus 201 ~~H~~i~~Ai~~~d~~~a~~~~~~H~~ 227 (241)
T PRK03837 201 QEHIAIVDAIRAHDPDEADRALQSHLN 227 (241)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456889999999999999999988754
No 153
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.48 E-value=78 Score=22.91 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=27.0
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..-+|.++...|++.+|...+..|++.+...
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4458889999999999999999999987764
No 154
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.55 E-value=75 Score=21.89 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=19.7
Q ss_pred HHHHHHcCCHHHHHHHHHHcchh
Q psy9817 172 LTQAVRMGELQKFNEVLTTYGNQ 194 (231)
Q Consensus 172 L~~AVr~Gdl~~F~~~l~~~~~~ 194 (231)
+.+|+..||+..|.+.+.++...
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~ 23 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN 23 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh
Confidence 46899999999999999987653
No 155
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=38.33 E-value=2.2e+02 Score=23.28 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHH
Q psy9817 38 SFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKN 117 (231)
Q Consensus 38 ~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~ 117 (231)
.+|=.-++.+.....++.......-+-..|.+.|..+.|-+....+. +.-.+..+.+.-..-.=|+.+..+++.....+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444444454334444555556678899999999999999987642 22345579999999999999999999999999
Q ss_pred HHHHHHh
Q psy9817 118 LVQALRK 124 (231)
Q Consensus 118 L~~A~~~ 124 (231)
++.|-..
T Consensus 96 i~ka~~~ 102 (177)
T PF10602_consen 96 IEKAESL 102 (177)
T ss_pred HHHHHHH
Confidence 9999854
No 156
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.12 E-value=61 Score=32.78 Aligned_cols=62 Identities=5% Similarity=-0.086 Sum_probs=46.9
Q ss_pred HHHHHHHhcCChhhHHhhhhcc-CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKS-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~-~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+|-++-.+.+.++.|..++... ++- ++.+..+...+.+..-++++.+|....+++++..|.+
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~-----Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRF-----PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 4467777788888888888654 331 3556777778888888888888888888888888875
No 157
>KOG2471|consensus
Probab=37.98 E-value=73 Score=31.26 Aligned_cols=55 Identities=24% Similarity=0.220 Sum_probs=42.2
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
.-+|-+|-.++.++++.+|..+|++|....|.- ..++ ++-.-+-..|.+|..|..
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~--v~~~--A~~lavyidL~~G~~q~a 674 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSL--VNVQ--ATVLAVYIDLMLGRSQDA 674 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhcc--ccHH--HHHHHHHHHHhcCCCcch
Confidence 457889999999999999999999999888842 1222 334445678899998874
No 158
>KOG4507|consensus
Probab=37.75 E-value=55 Score=32.79 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=41.6
Q ss_pred HHHHHhcCChhhHHhhhhcc-CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKS-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~-~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-...++.+...-|..++... .+- .++ -.++|=+|+.++...+.+.|.++|.+|+.+.|..
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~~----~se-pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAIN----SSE-PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhhc----ccC-chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC
Confidence 44445555666666665321 000 112 2467889999999999999999999999987763
No 159
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=37.36 E-value=2.2e+02 Score=25.33 Aligned_cols=66 Identities=20% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+.+-+-++-|+.|++..|...+.+..-|. +.-.+.+=-+|-++.-.|++.+|..-+.+|+...|.
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~----p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA----PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN 166 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC----CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence 345557899999999999999997764432 111233334566666677777777777777766665
No 160
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=37.07 E-value=1.2e+02 Score=25.03 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 166 LSPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 166 L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....++++|++.||..+..+++..|-.
T Consensus 180 ~~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 207 (212)
T TIGR03338 180 AAEHRAIVDAIASGDAERAGALMRAHVA 207 (212)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3457899999999999999999998843
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.73 E-value=41 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+++-+++|.+|.+.++.++..-|.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~ 28 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD 28 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence 568899999999999999999988875
No 162
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=36.16 E-value=1.2e+02 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=25.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHcchhhhhcc
Q psy9817 169 YFQLTQAVRMGELQKFNEVLTTYGNQFRTDY 199 (231)
Q Consensus 169 Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg 199 (231)
...|.++++.||+..--+|++++.....+++
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~ 35 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRN 35 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcC
Confidence 3578899999999999999999887666654
No 163
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=34.91 E-value=1.2e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHcchhhh
Q psy9817 171 QLTQAVRMGELQKFNEVLTTYGNQFR 196 (231)
Q Consensus 171 ~L~~AVr~Gdl~~F~~~l~~~~~~f~ 196 (231)
+++.+-+.||..+.+++++.++..-.
T Consensus 2 ~vI~~A~~GD~~A~~~IL~~y~~yI~ 27 (65)
T PF12645_consen 2 EVIKAAKQGDPEAMEEILKHYEPYIS 27 (65)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56778889999999999999987555
No 164
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.79 E-value=1.7e+02 Score=21.01 Aligned_cols=74 Identities=15% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHhhcHHHHHHHHHHHHHhCChhhhhh---HHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhhcccchHHHHHHHHcCC
Q psy9817 105 KAVRLEYSTAHKNLVQALRKAPQTAAVG---FRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRRALSPYFQLTQAVRMGE 180 (231)
Q Consensus 105 ~~~~~~y~~A~~~L~~A~~~~p~~~~~~---~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~~L~~Y~~L~~AVr~Gd 180 (231)
.+-.+||.+|.+.|...+..+......+ .....+--+--+...+|..+.. ..++ ..+..|=..||
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~-----------eAi~~Are~~D 76 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALE-----------EAIRLARENGD 76 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHH-----------HHHHHHHHHCC
Confidence 4567999999999999999888753222 2222333334455556765442 1222 23334445577
Q ss_pred HHHHHHHHH
Q psy9817 181 LQKFNEVLT 189 (231)
Q Consensus 181 l~~F~~~l~ 189 (231)
......++.
T Consensus 77 ~~~l~~al~ 85 (94)
T PF12862_consen 77 RRCLAYALS 85 (94)
T ss_pred HHHHHHHHH
Confidence 666655553
No 165
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=34.78 E-value=1.7e+02 Score=25.12 Aligned_cols=82 Identities=10% Similarity=0.067 Sum_probs=44.6
Q ss_pred hhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHH
Q psy9817 108 RLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEV 187 (231)
Q Consensus 108 ~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~ 187 (231)
...+.+|...|..|+-.+..|......-..+.-++.-....+..+ .....+.. .+..+..|++||+.||...-.++
T Consensus 144 ~~~~~~aD~~FH~aIa~as~N~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~--~~~~H~~I~~AI~~~D~~~A~~a 219 (241)
T COG2186 144 GEAFAEADLAFHLAIAEASGNPVLLLLLEALWDLLRRSVRASTLA--ALARDETV--VLEEHRAIVDAIAAGDPDAAREA 219 (241)
T ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhchh--hcccccch--hHHHHHHHHHHHHhCCHHHHHHH
Confidence 456778888888888776655222111111111111111111100 01111110 13557899999999999999999
Q ss_pred HHHcch
Q psy9817 188 LTTYGN 193 (231)
Q Consensus 188 l~~~~~ 193 (231)
+.+|-.
T Consensus 220 m~~hl~ 225 (241)
T COG2186 220 MRAHLE 225 (241)
T ss_pred HHHHHH
Confidence 988854
No 166
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.85 E-value=51 Score=24.79 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=30.3
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+...-....|.+.+..|||++|+.++..|-+..+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 355667778999999999999999999999766444
No 167
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=32.77 E-value=2.3e+02 Score=23.30 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcC-CCCCH-HHhhH------HHHhhcccchHHHHHHHHcCCHHHHHHHHHHcch-hhhhcchHH--HHH
Q psy9817 137 TQKLAVVVELLLG-DIPDR-QIFRQ------AVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGN-QFRTDYTFK--LIL 205 (231)
Q Consensus 137 ilk~lI~v~LllG-~iP~~-~ll~~------~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~-~f~~dg~y~--Lv~ 205 (231)
+-+.+-.+.++.| ++|.+ +-+.| .+.+..+.+|...++..-.||+.+.-+....+++ .|.+|+.-. +++
T Consensus 6 l~l~~~~~g~l~~~Q~P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~~~~~~li~~~~~s~dp~~~~~a~~~~~~~~ 85 (167)
T PF11157_consen 6 LRLAVFAAGALIGSQIPEFAQQYQQRLGGHLDELRRQVAGFQATAARYFGGDREALIAHYRQSSDPVFRARAESMQATIE 85 (167)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCCHHHHhhHHHHHHHHH
Confidence 3344445666654 59997 34443 4567777889999999889999999998888887 777777553 454
Q ss_pred HH
Q psy9817 206 RL 207 (231)
Q Consensus 206 rl 207 (231)
|.
T Consensus 86 R~ 87 (167)
T PF11157_consen 86 RY 87 (167)
T ss_pred HH
Confidence 44
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=32.40 E-value=2.9e+02 Score=22.79 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=40.8
Q ss_pred HHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 65 RNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 65 r~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..++..|+++.|...++.. .+|. .+..+.+. +.+|..+.-.++|.+|...++.-++.=|.+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~-s~~a~~A~--l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPN-SPYAPQAQ--LMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TT-STTHHHHH--HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-ChHHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 4567888888888888643 3554 22344444 577888888899999998888888887764
No 169
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=31.93 E-value=3.3e+02 Score=25.07 Aligned_cols=64 Identities=9% Similarity=-0.057 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
.+...+=+.|++.+.++.|...+++..--+..+.++. +. .+|.++.-.++-.+|.++..+|+..
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~--~~-~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND--LA-MAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH--HH-HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555667999999999999999984211111112333 44 7799999999999999999998764
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=31.41 E-value=5.6e+02 Score=25.89 Aligned_cols=107 Identities=8% Similarity=-0.021 Sum_probs=69.1
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CCC-C-CchhhH
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PEN-A-SNNEWA 95 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~~-~-~~~~~v 95 (231)
..-.+..+...+.++..+..+-.+...+...++........+.+-..+...|.++.|...+.... . ... . ......
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 44455566667777777766666555543334444444555667788999999999998874321 0 000 0 001112
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
.-....|.++..+|++.+|...+..|+..+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 2245689999999999999999999987654
No 171
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=31.28 E-value=2.5e+02 Score=23.13 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhcc---CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 56 QAVLINCLLRNYLHYNLYDQADKLVKKS---AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 56 ~~~l~N~Llr~Yf~~~~~~~a~~l~~~~---~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
..+++|.+ -.+++.+.++.|..++... ..|+ ...-+.+.+.||.|-+...+|+-.++.+...+|+.-
T Consensus 128 ~~il~N~~-~~~i~~~~~~~a~~~l~~l~~l~~~~-~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~ 197 (220)
T TIGR01716 128 IQLLLNIA-VLLIEKNEFSYAQYFLEKLEKILDPE-DDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEI 197 (220)
T ss_pred HHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 33445554 4456677899999998543 3333 112378999999999999988877666666666653
No 172
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.95 E-value=9.6 Score=37.31 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=73.0
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh-----------CCh---hhhhhHHHHHHHHHHHHHHhcCC---CC-C
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK-----------APQ---TAAVGFRQTTQKLAVVVELLLGD---IP-D 153 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~-----------~p~---~~~~~~~~~ilk~lI~v~LllG~---iP-~ 153 (231)
.-+.+|+|.-=|---.+.+. .-......|+|+ +|- ++.-| +.-||||..+.-|+ +| +
T Consensus 122 e~RLkYRyLDLRR~~m~~~l-~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG----ARDfLVPSRv~~G~FYALPQS 196 (585)
T COG0173 122 EIRLKYRYLDLRRPEMQKNL-KLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEG----ARDFLVPSRVHPGKFYALPQS 196 (585)
T ss_pred hhhhhhhhhhhcCHHHHHHH-HHHHHHHHHHHHHHhhcCCeEeecCccccCCCcc----ccccccccccCCCceeecCCC
Confidence 46788998765443333332 233444555551 121 01112 45799999999999 67 6
Q ss_pred HHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHH----Hcchhhhh-cchHHHHHHHHHHHHHH
Q psy9817 154 RQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLT----TYGNQFRT-DYTFKLILRLRHNVIKT 214 (231)
Q Consensus 154 ~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~----~~~~~f~~-dg~y~Lv~rlr~~v~R~ 214 (231)
+++|+|=-|-....-|++|+.+.|.-|+.+=+| =| .-|..|.. +....++|++-.-|++.
T Consensus 197 PQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~ 261 (585)
T COG0173 197 PQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRYVFKE 261 (585)
T ss_pred HHHHHHHHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHHHHHH
Confidence 789998888888888999999999999864332 11 11233443 44556777766555554
No 173
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=30.84 E-value=4.1e+02 Score=25.32 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHH
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINC--LLRNYLHYNLYDQADKLVKKSAFPENASNNEWARF 97 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~--Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y 97 (231)
.|+-+|.+...++++.....+-.+. ....+|.|.-.++. +--+++-..+++.|...+..-.- .++--.+.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~----~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y 342 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI----ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc----cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHH
Confidence 5666777777777776665553333 22345555554442 34556667777777766643211 111235778
Q ss_pred HhhHHHHHHHhhcH
Q psy9817 98 HFYLGRIKAVRLEY 111 (231)
Q Consensus 98 ~YY~Gri~~~~~~y 111 (231)
.|..|-++...++.
T Consensus 343 ~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 343 AYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhhccc
Confidence 88888888887777
No 174
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=30.24 E-value=1.3e+02 Score=18.15 Aligned_cols=29 Identities=10% Similarity=-0.049 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHH--HHHHh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLV--QALRK 124 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~--~A~~~ 124 (231)
.+.|=.|-..-.+++|.+|.+.++ .+...
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~l 32 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCAL 32 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 466777888889999999999977 54433
No 175
>PLN03218 maturation of RBCL 1; Provisional
Probab=30.14 E-value=7.1e+02 Score=26.65 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK 124 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~ 124 (231)
++.|.|+..|.+.+.++.|..++..+.--...-.++.++|.-... .+.-.+++.+|.+.+....+.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~-ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK-ACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHc
Confidence 456677777777777777777764331100000123455544333 355667777777777776654
No 176
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=4.5e+02 Score=24.39 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=64.8
Q ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHH---HHHHHhcCChhhHHhhhhcc---CCCCCCCchhhH
Q psy9817 22 YHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCL---LRNYLHYNLYDQADKLVKKS---AFPENASNNEWA 95 (231)
Q Consensus 22 y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~L---lr~Yf~~~~~~~a~~l~~~~---~~p~~~~~~~~v 95 (231)
=.++.+|.+|.+.++.+.+.+.-. ..-........+|-. ++.+...+.|-+|....+|. .|.+..--+.-+
T Consensus 136 ~L~~ikee~Gdi~sA~Dilcn~pV---ETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKl 212 (439)
T COG5071 136 LLSQIKEEQGDIKSAQDILCNEPV---ETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKL 212 (439)
T ss_pred HHHHHHHHhcchhHHHHHHhcCch---hhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHH
Confidence 356677888888887777644211 000111222334422 68888888899888765433 354322335667
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
.|+=..-++.+-+..|-+|-.+++..+...
T Consensus 213 kyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~ 242 (439)
T COG5071 213 KYYELKVRIGLHDRAYLDVCKYYRAVYDTA 242 (439)
T ss_pred HHHHHhheeecccHHHHHHHHHHHHHHHHH
Confidence 788888889999999999998888877643
No 177
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.07 E-value=6e+02 Score=25.77 Aligned_cols=97 Identities=11% Similarity=-0.034 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHH
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWAR 96 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~ 96 (231)
+..++=.+++.+-.+..++....+ ++++ -.+++-....+|+ -.+..+.+.++.|.-.....- ...++-.+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l----~~~~-~~~Pd~~~a~~~~-a~~L~~~~~~eeA~~~~~~~l----~~~p~~~~ 155 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVW----RGIH-QRFPDSSEAFILM-LRGVKRQQGIEAGRAEIELYF----SGGSSSAR 155 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHH----HHHH-hhCCCcHHHHHHH-HHHHHHhccHHHHHHHHHHHh----hcCCCCHH
Confidence 566777777777777666655333 2222 2333333344443 345556777776665554321 01134466
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
.++-.|....-.|+|.+|.+.+..++.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 667777777777777777777777775
No 178
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=29.61 E-value=2.7e+02 Score=24.26 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=45.0
Q ss_pred hcCChhhHHhhhhccCCCC-C-C--CchhhHHHHhhHHHHHHHhh-cHHHHHHHHHHHHHhC
Q psy9817 69 HYNLYDQADKLVKKSAFPE-N-A--SNNEWARFHFYLGRIKAVRL-EYSTAHKNLVQALRKA 125 (231)
Q Consensus 69 ~~~~~~~a~~l~~~~~~p~-~-~--~~~~~v~Y~YY~Gri~~~~~-~y~~A~~~L~~A~~~~ 125 (231)
+.|+.+.|...+++..-.. . . ...+.++=.|-.|+-..-++ +|++|-..|+.|++.|
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 5688899999987664311 1 1 12477888899999999999 9999999999999986
No 179
>KOG4056|consensus
Probab=29.15 E-value=82 Score=25.39 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 101 LGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
+|--++.++++.++-.||..|+-.||++. . +.+++.+.+|..
T Consensus 87 lGE~L~~qg~~e~ga~h~~nAi~vcgqpa-q-----------LL~vlq~tlp~~ 128 (143)
T KOG4056|consen 87 LGEELLAQGNEEEGAEHLANAIVVCGQPA-Q-----------LLQVLQQTLPEA 128 (143)
T ss_pred hHHHHHHccCHHHHHHHHHHHHhhcCCHH-H-----------HHHHHHhhCCHH
Confidence 58888999999999999999999999852 1 234556677763
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=28.94 E-value=1.4e+02 Score=25.80 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=45.3
Q ss_pred HHHHHhcCChhhHHhhhhcc-CC-CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKS-AF-PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~-~~-p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-+--|.++.+..|.+.+++- .. |...+..... ..||.+..+|.|.+|+..|.||+...|..
T Consensus 131 A~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L----l~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 131 AQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL----LFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH----HHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 56678889999998888653 22 4433322222 35999999999999999999999888764
No 181
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=28.65 E-value=3.5e+02 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.6
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....|++|++.||..+..+++..|-.
T Consensus 190 ~~H~~I~~Ai~~~d~~~A~~~m~~H~~ 216 (235)
T TIGR02812 190 QFYKELQALCKAGNHDEVPDCIRQYGI 216 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456899999999999999999998854
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.56 E-value=1.3e+02 Score=26.82 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.-|.-+..| +.|.|..|..-|.+- .+|... -...=+|++|-.++.+++|.+|-..+..+.+.-|.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 455556666 455699988877532 345421 112236899999999999999999999999976764
No 183
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.26 E-value=69 Score=17.21 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=16.9
Q ss_pred hcHHHHHHHHHHHHHhCChh
Q psy9817 109 LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 109 ~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.++|..-++.|+..+|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 1 GDIERARKIYERALEKFPKS 20 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC
Confidence 46788999999999999953
No 184
>KOG0550|consensus
Probab=26.58 E-value=3.8e+02 Score=25.82 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=59.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHHhhcccc-hH-
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSP-YF- 170 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~~~~L~~-Y~- 170 (231)
..+.=.=-.|--.+=+|+|++|+++++.|+..-|.+. ..--..+-=.-.|.+-+|+.-+. +......-.+.+ |.
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~rLgrl~ea--isdc~~Al~iD~syik 322 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIRLGRLREA--ISDCNEALKIDSSYIK 322 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcccCCchhh--hhhhhhhhhcCHHHHH
Confidence 3344344456667789999999999999999988753 22222222233455556664321 221111222222 32
Q ss_pred -HHHHHHHcCCHHHHHHHHHHcchhhhhcch
Q psy9817 171 -QLTQAVRMGELQKFNEVLTTYGNQFRTDYT 200 (231)
Q Consensus 171 -~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~ 200 (231)
-+.+|--.=++.+|..+++.++.....+.+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 233333334688888888888776666555
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.36 E-value=2.8e+02 Score=26.07 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+.+.|+..|.-..|-.++.++. .|. -..=+-..++..+-+++|..|....++|...+|..
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQ------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35667777777777766665442 232 24444567888888888999999999999888875
No 186
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.01 E-value=94 Score=22.22 Aligned_cols=18 Identities=11% Similarity=-0.091 Sum_probs=10.5
Q ss_pred hcHHHHHHHHHHHHHhCC
Q psy9817 109 LEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 109 ~~y~~A~~~L~~A~~~~p 126 (231)
++|.+|.+.+.+|++.|-
T Consensus 20 gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 20 GNAEEAIELYTEAVELCI 37 (75)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 556666666666665543
No 187
>KOG0547|consensus
Probab=25.59 E-value=1.3e+02 Score=29.49 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHH
Q psy9817 66 NYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQT 136 (231)
Q Consensus 66 ~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ 136 (231)
.|...++.+.--+.|.+.. -|+ -.-=+|--|-++++.++|.+|-..++.|.+..|.+ +..+.|.
T Consensus 369 ~y~d~~~~~~~~~~F~~A~~ldp~------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~-~~~~iQl 434 (606)
T KOG0547|consen 369 AYADENQSEKMWKDFNKAEDLDPE------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN-AYAYIQL 434 (606)
T ss_pred HHhhhhccHHHHHHHHHHHhcCCC------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh-hHHHHHH
Confidence 4455555555555554331 122 11236778999999999999999999999999986 3444443
No 188
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=24.49 E-value=1.7e+02 Score=25.04 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=24.8
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHHcchh
Q psy9817 166 LSPYFQLTQAVRMGELQKFNEVLTTYGNQ 194 (231)
Q Consensus 166 L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~ 194 (231)
......|++|++.||..+..+++..|-..
T Consensus 191 ~~~H~~I~~AI~~~D~~~A~~~~~~H~~~ 219 (253)
T PRK10421 191 TEQHQAVMDAILAGDAEGARKAMMAHLSF 219 (253)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34578999999999999999999988653
No 189
>KOG0548|consensus
Probab=24.15 E-value=1.4e+02 Score=29.19 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHhcCChhhHHhhhhccCCCCCC----------------------CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 66 NYLHYNLYDQADKLVKKSAFPENA----------------------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 66 ~Yf~~~~~~~a~~l~~~~~~p~~~----------------------~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
.|.+.+.++.|-..+.++..+... -+++..+=--+.|--.+-.++|.+|-.++++|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 677777888887776544322110 0122233334559999999999999999999999
Q ss_pred hCChh-hhhhHHHHHHHHHH
Q psy9817 124 KAPQT-AAVGFRQTTQKLAV 142 (231)
Q Consensus 124 ~~p~~-~~~~~~~~ilk~lI 142 (231)
.-|.+ ...+|+-.++..|.
T Consensus 387 r~P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLG 406 (539)
T ss_pred cCCchhHHHHHHHHHHHHHh
Confidence 99986 45667777765554
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=24.10 E-value=4.1e+02 Score=21.85 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc-chhHHHHHH-HHHH-------HHhcCChhhHHhhhhc--
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF-EGQAVLINC-LLRN-------YLHYNLYDQADKLVKK-- 82 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~-~~~~~l~N~-Llr~-------Yf~~~~~~~a~~l~~~-- 82 (231)
..+.++.|..+.++-..+.....+..+-.-++.- ..+.. +-...+... .++. .-..+....|..-+..
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 5677788888888888888777766553333221 12221 111122211 1111 1111222233333322
Q ss_pred cCCCCCCC-----------chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCC
Q psy9817 83 SAFPENAS-----------NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGD 150 (231)
Q Consensus 83 ~~~p~~~~-----------~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~ 150 (231)
..+|++.- .+..++.-++.|+.|+-.++|..|-.-+++.+++=|.. .....++..++-.-.-+|.
T Consensus 118 ~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 118 KRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT---PAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-
T ss_pred HHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCC
Confidence 24565421 24778889999999999999999999999999998863 4556677777666666663
No 191
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=23.83 E-value=64 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy9817 170 FQLTQAVRMGELQKFNEVLTT 190 (231)
Q Consensus 170 ~~L~~AVr~Gdl~~F~~~l~~ 190 (231)
.+|-+|++.||..+|.+.++-
T Consensus 18 ~~i~~Ai~~~D~~~l~~~VD~ 38 (95)
T PF11159_consen 18 YQIRQAIQAHDAAALARYVDF 38 (95)
T ss_pred HHHHHHHHHcCHHHHHHHcCH
Confidence 478899999999999998863
No 192
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=23.82 E-value=1.9e+02 Score=22.29 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHHhcCCCCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcc
Q psy9817 143 VVELLLGDIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDY 199 (231)
Q Consensus 143 ~v~LllG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg 199 (231)
+++..+|+.|+.+-.. .|.++..=++-|-.=|..-|-..+.++...|.+|-
T Consensus 8 ~i~~YLgr~ps~~~y~------~Lk~q~~~I~~I~~Fnkd~Fi~LikKNk~~Ff~d~ 58 (108)
T PF12630_consen 8 IIEEYLGRNPSLEEYH------MLKSQVRNIQRIINFNKDIFISLIKKNKKRFFSDI 58 (108)
T ss_dssp HHHHHHTS---HHHHH------HHGGGHHHHHHHHHS-HHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHhCCCCChHHHH------HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhc
Confidence 4567789999976543 23343444555666778888888888887777653
No 193
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.77 E-value=1.7e+02 Score=25.83 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Q psy9817 101 LGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKL 140 (231)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~ 140 (231)
+|.=|+-++++..|...|..|+++.|.. ......++.-|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~-~~a~~~~A~~Y 79 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSY-YLAHLVRAHYY 79 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
No 194
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=23.72 E-value=1.2e+02 Score=26.92 Aligned_cols=59 Identities=17% Similarity=0.136 Sum_probs=41.0
Q ss_pred HHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 66 NYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 66 ~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.|-..|.-.+|.+=++.+- +-++.+..=+=|+|.++...++|+.|.+.++..++.-|..
T Consensus 74 lYDSlGL~~LAR~DftQaL----ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL----AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh----hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 3556666666666554321 1122344445579999999999999999999999987763
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=23.52 E-value=3e+02 Score=22.10 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.8
Q ss_pred HhcCChhhHHhhhhc--cCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 68 LHYNLYDQADKLVKK--SAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 68 f~~~~~~~a~~l~~~--~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.++|+.|...++. +.+|- .+.+++++. =+|-.|.-+++|.+|...+..=++.-|.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~-g~ya~qAqL--~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPF-GEYAEQAQL--DLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCC-CcccHHHHH--HHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 578899999888864 45553 334555553 37778888999999999999999988875
No 196
>PHA02992 hypothetical protein; Provisional
Probab=23.43 E-value=1.6e+02 Score=29.92 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=38.0
Q ss_pred chHHHHHHH-HcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHH
Q psy9817 168 PYFQLTQAV-RMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHN 210 (231)
Q Consensus 168 ~Y~~L~~AV-r~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~ 210 (231)
++.+|+.++ +.-|++.|.+.++-|..+..+..++.++-|+..-
T Consensus 69 ~f~DLi~~i~~~~nve~ya~HI~fhk~~ilq~~~~~li~kCi~y 112 (728)
T PHA02992 69 LFIDLISVITKQKNVELYASHINFHKNEILQKCDKSLIAKCIPY 112 (728)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHhHHHHHHhcCHHHHHHHhhh
Confidence 478888887 6789999999999999999999999999998653
No 197
>PLN02789 farnesyltranstransferase
Probab=23.37 E-value=3.6e+02 Score=24.39 Aligned_cols=65 Identities=8% Similarity=-0.054 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhh-cHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRL-EYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~-~y~~A~~~L~~A~~~~p~~ 128 (231)
.+.+-.++...+.++.|-.+..+..-- +++-.+-..|.|.+..-.+ ++.+|.+.++.++...|.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 445556666666777666666544210 1222334445565555444 5788888888888777765
No 198
>KOG2003|consensus
Probab=23.22 E-value=69 Score=31.18 Aligned_cols=88 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhhcccc-hHHHHHHHHc
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRRALSP-YFQLTQAVRM 178 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~~L~~-Y~~L~~AVr~ 178 (231)
|-|++-+.+|++|..++..|+...|... ...+..|+.-.-+.=+-+|...+. +.|.+ -+..+.+.. |.-++-+.-.
T Consensus 244 gni~~kkr~fskaikfyrmaldqvpsin-k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 244 GNIHFKKREFSKAIKFYRMALDQVPSIN-KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI 322 (840)
T ss_pred cceeeehhhHHHHHHHHHHHHhhccccc-hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec
Q ss_pred CCHHHHHHHHHH
Q psy9817 179 GELQKFNEVLTT 190 (231)
Q Consensus 179 Gdl~~F~~~l~~ 190 (231)
||-.+..++.++
T Consensus 323 ~d~ekmkeaf~k 334 (840)
T KOG2003|consen 323 GDAEKMKEAFQK 334 (840)
T ss_pred CcHHHHHHHHHH
No 199
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=23.03 E-value=4.5e+02 Score=21.97 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.8
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....|++|++.||..+-.+++..|-.
T Consensus 191 ~~H~~I~~Ai~~~D~~~a~~~~~~H~~ 217 (239)
T PRK04984 191 GFYHKLSALCEEGNHDQVPECVRQYGI 217 (239)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457899999999999999999998853
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.66 E-value=8.1e+02 Score=24.77 Aligned_cols=109 Identities=16% Similarity=0.099 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcc-hhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHH
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFE-GQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARF 97 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~-~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y 97 (231)
++...++.+...+..+.....+-..........+.. ......+.....+...+..+.|...+.....+......-....
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 344455555555555555544433333221111110 0111122334556667888888888755433322111111222
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.-..|+++...+++.+|...|+.|+..+..
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999987543
No 201
>KOG0553|consensus
Probab=22.53 E-value=2.7e+02 Score=25.33 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=40.7
Q ss_pred HHHHhcCChhhHHhhhhcc-CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 65 RNYLHYNLYDQADKLVKKS-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 65 r~Yf~~~~~~~a~~l~~~~-~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-.|.+++.++.|=+=-.++ .+- ++..+=+==+|+.|.-+++|.+|.+.+..|++.=|.+
T Consensus 123 AAy~~Lg~~~~AVkDce~Al~iD-----p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 123 AAYSKLGEYEDAVKDCESALSID-----PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 3566666666654433222 121 2334444458999999999999999999999998876
No 202
>KOG4162|consensus
Probab=22.34 E-value=6.9e+02 Score=25.84 Aligned_cols=81 Identities=16% Similarity=0.288 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCC--CCCHHHhhHHHHhh--ccc-chHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGD--IPDRQIFRQAVLRR--ALS-PYFQ 171 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~--iP~~~ll~~~~~~~--~L~-~Y~~ 171 (231)
=+|-.|+....+++..||.+.|..|+...|.+. .-+..+-+.+.- .|+ +|....+-...++. .+. .+..
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle----~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLE----LGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHH----hCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 345678999999999999999999999999863 222222232222 353 55543232222222 221 2666
Q ss_pred HHHHHHc-CCHHH
Q psy9817 172 LTQAVRM-GELQK 183 (231)
Q Consensus 172 L~~AVr~-Gdl~~ 183 (231)
|-...+. ||..+
T Consensus 760 LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHHccchHH
Confidence 7776654 88763
No 203
>PF03677 UPF0137: Uncharacterised protein family (UPF0137); InterPro: IPR005350 This family of bacterial proteins includes a number of plasmid-encoded virulence proteins.
Probab=21.92 E-value=5.5e+02 Score=22.56 Aligned_cols=110 Identities=21% Similarity=0.306 Sum_probs=70.5
Q ss_pred HhhhhccCCCCCCCchhhHHHHhhHHHHHHHhh--------cHHHHHHHHHH------HHHhCChhhhhhHHHHHHHHHH
Q psy9817 77 DKLVKKSAFPENASNNEWARFHFYLGRIKAVRL--------EYSTAHKNLVQ------ALRKAPQTAAVGFRQTTQKLAV 142 (231)
Q Consensus 77 ~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~--------~y~~A~~~L~~------A~~~~p~~~~~~~~~~ilk~lI 142 (231)
++++.+..+++.....+...-.=.+|-|..++. +..+|++-|.. ||.. =-..+.||++..+.+|.
T Consensus 46 e~Ll~~y~~~d~~~~~dl~~lk~LTsqIKsI~~Q~vlL~GErI~kvreiLk~~~y~egtFSa-Wl~l~ygnrqt~YN~L~ 124 (243)
T PF03677_consen 46 ENLLEKYNFSDEISQEDLQSLKLLTSQIKSIQKQAVLLHGERIKKVREILKSMNYREGTFSA-WLILTYGNRQTPYNFLQ 124 (243)
T ss_pred HHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhccCccchHHH-HHHHHHccccCchHHHH
Confidence 455556666655444566666666777776664 56788888876 2210 00124788888899988
Q ss_pred HHHHhcCCCCCHHHhhHHHHhhcccchHHH-HHHHHcCCHHHHHHHHHHcc
Q psy9817 143 VVELLLGDIPDRQIFRQAVLRRALSPYFQL-TQAVRMGELQKFNEVLTTYG 192 (231)
Q Consensus 143 ~v~LllG~iP~~~ll~~~~~~~~L~~Y~~L-~~AVr~Gdl~~F~~~l~~~~ 192 (231)
--+|..+ +|+.++=. ...-.||... +-|=|.|++++=.++++++.
T Consensus 125 YYElf~~-LP~~~lk~----~~~~mP~qa~Y~LASRkG~~ekK~~ii~~~~ 170 (243)
T PF03677_consen 125 YYELFIS-LPDKNLKS----EFQSMPRQAAYTLASRKGSQEKKVEIIGNYN 170 (243)
T ss_pred HHHHHHh-CCCcchHH----HHHhhhHHHHHHHHhccCcHHHHHHHHHHhc
Confidence 8888764 67743311 1111566644 44889999999999998875
No 204
>KOG3060|consensus
Probab=21.72 E-value=3.9e+02 Score=24.06 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHhcCChhhHHhhhhccCC--CCCC-CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSAF--PENA-SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~~--p~~~-~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk 139 (231)
|..+|+..+.+..|--.++-... |-.. -......=+|+.|- -.++.-|..++..|+..||.+. .+.-...+.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~-ral~GI~lc 234 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNL-RALFGIYLC 234 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhH-HHHHHHHHH
Confidence 46789999999988877754432 3211 12455667788776 6789999999999999999542 443333444
Q ss_pred HHHHHHHhcCC
Q psy9817 140 LAVVVELLLGD 150 (231)
Q Consensus 140 ~lI~v~LllG~ 150 (231)
-.-++++.-|+
T Consensus 235 ~~~la~~sk~~ 245 (289)
T KOG3060|consen 235 GSALAQISKAE 245 (289)
T ss_pred HHHHHHHhHHH
Confidence 44445444443
No 205
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=21.44 E-value=4.7e+02 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=22.8
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcc
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYG 192 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~ 192 (231)
..-..|++|++.||..+-.+++..|-
T Consensus 185 ~eH~~Il~Ai~~~D~~~A~~~~~~Hi 210 (224)
T PRK11534 185 DQHQTLTAAILARDTARASELMRQHL 210 (224)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34679999999999999999998884
No 206
>KOG4648|consensus
Probab=20.68 E-value=1e+02 Score=29.08 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=27.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCChh-hhhhHHHHH
Q psy9817 101 LGRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTT 137 (231)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~~~~~~~i 137 (231)
.|--|+-|+.|.||-.|++.++...|.+ ....|+-.+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~A 140 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALA 140 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHH
Confidence 4777888899999999999999888854 334444444
No 207
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=20.66 E-value=4.9e+02 Score=21.52 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....|++|++.||..+..+++..|-.
T Consensus 183 ~~H~~I~~Ai~~~D~~~A~~~~~~hl~ 209 (221)
T PRK11414 183 ENYRLLLAALKAKDKEGCRHCLAEIMQ 209 (221)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346799999999999999999888743
No 208
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=20.52 E-value=1.8e+02 Score=23.16 Aligned_cols=45 Identities=22% Similarity=0.249 Sum_probs=32.5
Q ss_pred HHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHH
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYST 113 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~ 113 (231)
++-|.||..+-|+.|..+++++. ++...|++|=.++...+.+=.|
T Consensus 79 llAksyFD~kEy~RaA~~L~~~~-------s~~~~FL~lYs~YLa~EKr~~E 123 (142)
T PF04049_consen 79 LLAKSYFDCKEYDRAAHVLKDCK-------SPKALFLRLYSRYLAGEKRKEE 123 (142)
T ss_pred HHHHHHhchhHHHHHHHHHccCC-------CchHHHHHHHHHHHHHHHHHhh
Confidence 46688888888888888887765 4557777777777776665333
Done!