Query psy9817
Match_columns 231
No_of_seqs 159 out of 448
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:29:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 1.4E-64 4.9E-69 476.4 12.1 230 2-231 166-407 (523)
2 3t5v_B Nuclear mRNA export pro 100.0 6.5E-44 2.2E-48 333.2 13.6 201 30-231 139-368 (455)
3 3t5x_A PCI domain-containing p 100.0 7.9E-41 2.7E-45 282.8 11.9 144 83-231 2-147 (203)
4 3txn_A 26S proteasome regulato 99.4 4.8E-12 1.6E-16 116.2 18.1 167 62-231 144-322 (394)
5 4b0z_A RPN12, 26S proteasome r 99.4 6.7E-13 2.3E-17 113.5 10.3 164 64-231 14-196 (229)
6 4b4t_P 26S proteasome regulato 99.4 3.5E-12 1.2E-16 118.5 15.3 222 9-230 129-364 (445)
7 4b4t_Q 26S proteasome regulato 99.1 9.7E-10 3.3E-14 97.6 14.2 217 14-230 132-361 (434)
8 4b4t_O 26S proteasome regulato 98.4 6E-07 2E-11 82.0 9.6 173 56-230 126-312 (393)
9 1qqe_A Vesicular transport pro 98.1 0.00011 3.6E-09 62.7 15.7 194 16-209 76-282 (292)
10 4b4t_R RPN7, 26S proteasome re 98.1 6.7E-05 2.3E-09 68.9 14.8 168 62-230 173-352 (429)
11 3ro3_A PINS homolog, G-protein 98.0 0.00013 4.4E-09 54.0 12.7 114 14-127 6-121 (164)
12 2ifu_A Gamma-SNAP; membrane fu 97.8 0.00051 1.7E-08 58.9 14.2 174 16-191 75-257 (307)
13 3gw4_A Uncharacterized protein 97.6 0.0022 7.5E-08 49.9 14.7 138 15-152 24-164 (203)
14 3ulq_A Response regulator aspa 97.6 0.0023 7.7E-08 55.8 16.0 140 15-154 101-243 (383)
15 3q15_A PSP28, response regulat 97.6 0.0031 1.1E-07 55.0 15.8 180 13-193 97-289 (378)
16 3sf4_A G-protein-signaling mod 97.5 0.0012 4.2E-08 56.6 12.8 136 17-152 227-364 (406)
17 3ro3_A PINS homolog, G-protein 97.5 0.0012 4.1E-08 48.5 11.1 113 15-127 47-161 (164)
18 3ro2_A PINS homolog, G-protein 97.5 0.0013 4.6E-08 54.2 12.3 114 14-127 180-295 (338)
19 3gw4_A Uncharacterized protein 97.4 0.0021 7.2E-08 49.9 11.7 115 13-127 62-179 (203)
20 4a1s_A PINS, partner of inscut 97.4 0.002 6.9E-08 55.9 12.7 183 14-196 163-374 (411)
21 3ro2_A PINS homolog, G-protein 97.4 0.02 6.9E-07 46.9 18.2 140 15-154 41-202 (338)
22 3ulq_A Response regulator aspa 97.4 0.0089 3.1E-07 52.0 16.6 141 14-154 140-283 (383)
23 3sf4_A G-protein-signaling mod 97.4 0.0025 8.6E-08 54.6 12.8 140 14-153 184-325 (406)
24 4a1s_A PINS, partner of inscut 97.3 0.003 1E-07 54.9 12.9 139 14-152 220-360 (411)
25 4gco_A Protein STI-1; structur 97.2 0.0033 1.1E-07 46.9 10.2 107 12-128 8-114 (126)
26 1elr_A TPR2A-domain of HOP; HO 97.2 0.0094 3.2E-07 42.2 12.0 106 16-127 3-111 (131)
27 3q15_A PSP28, response regulat 97.2 0.0069 2.4E-07 52.8 13.2 141 13-154 137-280 (378)
28 2vyi_A SGTA protein; chaperone 97.1 0.018 6.1E-07 40.6 13.0 105 12-128 7-113 (131)
29 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0051 1.7E-07 51.9 11.5 110 16-127 114-228 (293)
30 2vgx_A Chaperone SYCD; alterna 97.0 0.0089 3E-07 45.7 11.1 104 13-128 17-122 (148)
31 1hh8_A P67PHOX, NCF-2, neutrop 97.0 0.03 1E-06 43.9 14.1 107 16-128 36-154 (213)
32 2xcb_A PCRH, regulatory protei 96.9 0.0087 3E-07 44.8 10.4 104 13-128 14-119 (142)
33 1na0_A Designed protein CTPR3; 96.9 0.025 8.5E-07 39.5 12.2 101 16-128 8-110 (125)
34 2ho1_A Type 4 fimbrial biogene 96.9 0.11 3.9E-06 41.4 17.4 65 61-127 109-173 (252)
35 3uq3_A Heat shock protein STI1 96.9 0.11 3.9E-06 41.0 17.5 166 17-189 38-231 (258)
36 2xev_A YBGF; tetratricopeptide 96.8 0.039 1.3E-06 39.5 12.9 104 19-128 4-109 (129)
37 3sz7_A HSC70 cochaperone (SGT) 96.8 0.014 4.7E-07 44.6 10.8 103 14-128 8-112 (164)
38 3gyz_A Chaperone protein IPGC; 96.8 0.016 5.5E-07 45.0 11.1 104 13-128 32-137 (151)
39 2fbn_A 70 kDa peptidylprolyl i 96.7 0.03 1E-06 44.0 12.5 109 16-128 37-155 (198)
40 3u3w_A Transcriptional activat 96.7 0.021 7.3E-07 48.0 12.3 126 23-150 121-251 (293)
41 3nf1_A KLC 1, kinesin light ch 96.7 0.12 4.1E-06 42.2 16.4 113 13-125 23-141 (311)
42 3upv_A Heat shock protein STI1 96.7 0.024 8.2E-07 41.0 10.8 98 16-125 3-102 (126)
43 3rkv_A Putative peptidylprolyl 96.6 0.033 1.1E-06 42.3 11.7 108 17-128 11-130 (162)
44 3nf1_A KLC 1, kinesin light ch 96.6 0.041 1.4E-06 45.0 13.1 114 14-127 108-227 (311)
45 1elw_A TPR1-domain of HOP; HOP 96.6 0.036 1.2E-06 38.3 11.1 100 17-128 4-105 (118)
46 3u3w_A Transcriptional activat 96.6 0.015 5.1E-07 48.9 10.4 112 16-127 154-269 (293)
47 3q49_B STIP1 homology and U bo 96.6 0.01 3.5E-07 43.2 8.1 102 14-127 6-109 (137)
48 1qqe_A Vesicular transport pro 96.6 0.033 1.1E-06 47.0 12.4 173 18-191 38-225 (292)
49 2dba_A Smooth muscle cell asso 96.5 0.035 1.2E-06 40.4 10.8 105 13-128 24-132 (148)
50 3edt_B KLC 2, kinesin light ch 96.5 0.047 1.6E-06 43.7 12.5 112 14-125 40-157 (283)
51 2qfc_A PLCR protein; TPR, HTH, 96.5 0.022 7.7E-07 47.8 10.9 112 16-127 154-269 (293)
52 3edt_B KLC 2, kinesin light ch 96.5 0.068 2.3E-06 42.8 13.1 115 13-127 81-201 (283)
53 2lni_A Stress-induced-phosphop 96.4 0.041 1.4E-06 39.1 10.5 103 14-128 13-117 (133)
54 4b4t_Q 26S proteasome regulato 96.4 0.042 1.4E-06 47.9 12.5 104 24-127 102-207 (434)
55 1p5q_A FKBP52, FK506-binding p 96.3 0.066 2.3E-06 46.5 13.2 110 13-128 143-263 (336)
56 3as5_A MAMA; tetratricopeptide 96.3 0.11 3.7E-06 38.7 12.7 157 16-190 7-169 (186)
57 2vq2_A PILW, putative fimbrial 96.3 0.26 9E-06 37.9 17.4 103 17-128 42-146 (225)
58 2e2e_A Formate-dependent nitri 96.2 0.048 1.7E-06 41.7 10.6 101 16-128 43-148 (177)
59 2q7f_A YRRB protein; TPR, prot 96.2 0.24 8.3E-06 38.9 15.1 101 16-128 56-158 (243)
60 2ifu_A Gamma-SNAP; membrane fu 96.2 0.069 2.4E-06 45.3 12.4 138 16-154 35-174 (307)
61 1a17_A Serine/threonine protei 96.2 0.11 3.7E-06 38.4 12.2 101 16-128 12-114 (166)
62 3uq3_A Heat shock protein STI1 96.2 0.035 1.2E-06 44.1 10.0 101 13-125 135-237 (258)
63 1ihg_A Cyclophilin 40; ppiase 96.2 0.095 3.2E-06 46.5 13.7 108 17-128 223-340 (370)
64 3vtx_A MAMA; tetratricopeptide 96.2 0.032 1.1E-06 42.8 9.4 104 13-128 35-140 (184)
65 4i17_A Hypothetical protein; T 96.2 0.063 2.1E-06 42.7 11.4 104 18-127 43-149 (228)
66 3k9i_A BH0479 protein; putativ 96.2 0.032 1.1E-06 40.2 8.7 67 56-128 26-94 (117)
67 1hz4_A MALT regulatory protein 96.2 0.13 4.3E-06 44.1 13.9 176 16-192 52-242 (373)
68 3vtx_A MAMA; tetratricopeptide 96.2 0.076 2.6E-06 40.6 11.4 150 17-182 5-158 (184)
69 4i17_A Hypothetical protein; T 96.1 0.17 5.7E-06 40.2 13.7 102 18-128 8-109 (228)
70 3mkr_A Coatomer subunit epsilo 96.1 0.076 2.6E-06 45.1 12.3 55 17-82 101-155 (291)
71 2fo7_A Synthetic consensus TPR 96.1 0.05 1.7E-06 38.1 9.5 99 18-128 2-102 (136)
72 3qky_A Outer membrane assembly 96.1 0.062 2.1E-06 43.9 11.1 111 12-128 10-130 (261)
73 2fo7_A Synthetic consensus TPR 96.1 0.041 1.4E-06 38.6 8.8 61 62-128 6-68 (136)
74 4ga2_A E3 SUMO-protein ligase 96.0 0.042 1.4E-06 41.7 9.1 80 63-154 37-118 (150)
75 1na3_A Designed protein CTPR2; 96.0 0.042 1.4E-06 36.7 8.2 66 57-128 9-76 (91)
76 2kck_A TPR repeat; tetratricop 96.0 0.0072 2.5E-07 41.7 4.1 102 17-128 6-110 (112)
77 1fch_A Peroxisomal targeting s 95.9 0.075 2.6E-06 44.9 11.2 30 97-126 253-282 (368)
78 2vq2_A PILW, putative fimbrial 95.9 0.055 1.9E-06 41.9 9.6 103 16-128 75-181 (225)
79 3ma5_A Tetratricopeptide repea 95.9 0.016 5.4E-07 41.0 5.9 63 60-128 10-74 (100)
80 2gw1_A Mitochondrial precursor 95.9 0.077 2.6E-06 46.8 11.5 104 18-127 373-481 (514)
81 4eqf_A PEX5-related protein; a 95.9 0.31 1.1E-05 41.3 15.0 157 16-184 98-300 (365)
82 2ho1_A Type 4 fimbrial biogene 95.9 0.059 2E-06 43.1 9.9 102 17-128 105-208 (252)
83 1hh8_A P67PHOX, NCF-2, neutrop 95.8 0.08 2.7E-06 41.3 10.1 99 15-128 4-104 (213)
84 1xnf_A Lipoprotein NLPI; TPR, 95.8 0.07 2.4E-06 43.0 10.0 103 14-128 40-144 (275)
85 3hym_B Cell division cycle pro 95.8 0.17 5.9E-06 41.5 12.6 70 59-128 195-269 (330)
86 2l6j_A TPR repeat-containing p 95.7 0.056 1.9E-06 37.4 8.1 63 60-128 7-71 (111)
87 3as5_A MAMA; tetratricopeptide 95.7 0.058 2E-06 40.2 8.6 121 16-154 41-163 (186)
88 2kc7_A BFR218_protein; tetratr 95.7 0.031 1E-06 38.6 6.5 59 64-128 7-68 (99)
89 3qky_A Outer membrane assembly 95.6 0.3 1E-05 39.6 13.5 109 15-128 87-228 (261)
90 2kat_A Uncharacterized protein 95.6 0.032 1.1E-06 39.8 6.7 65 58-128 20-86 (115)
91 4gcn_A Protein STI-1; structur 95.6 0.19 6.5E-06 36.9 11.2 106 17-128 8-116 (127)
92 3u4t_A TPR repeat-containing p 95.6 0.4 1.4E-05 38.4 14.0 104 15-128 72-175 (272)
93 3cv0_A Peroxisome targeting si 95.6 0.18 6.2E-06 41.4 12.0 59 63-127 178-238 (327)
94 4eqf_A PEX5-related protein; a 95.6 0.065 2.2E-06 45.6 9.5 99 19-127 179-279 (365)
95 3ieg_A DNAJ homolog subfamily 95.5 0.16 5.6E-06 42.0 11.7 97 24-128 241-339 (359)
96 2q7f_A YRRB protein; TPR, prot 95.5 0.23 7.9E-06 39.0 12.0 121 16-154 90-212 (243)
97 1kt0_A FKBP51, 51 kDa FK506-bi 95.5 0.15 5.3E-06 46.2 12.2 110 13-128 264-384 (457)
98 3hym_B Cell division cycle pro 95.4 0.065 2.2E-06 44.2 8.8 106 17-128 193-303 (330)
99 3urz_A Uncharacterized protein 95.4 0.43 1.5E-05 37.8 13.3 101 23-129 60-191 (208)
100 2c2l_A CHIP, carboxy terminus 95.3 0.15 5.2E-06 42.8 10.9 102 17-128 4-105 (281)
101 1hz4_A MALT regulatory protein 95.3 0.86 2.9E-05 38.7 15.8 111 16-127 92-206 (373)
102 4abn_A Tetratricopeptide repea 95.3 0.17 6E-06 45.9 11.9 107 17-128 170-291 (474)
103 4ga2_A E3 SUMO-protein ligase 95.2 0.054 1.8E-06 41.2 6.9 101 16-128 30-133 (150)
104 2xpi_A Anaphase-promoting comp 95.1 0.17 6E-06 45.8 11.4 106 17-128 441-549 (597)
105 1fch_A Peroxisomal targeting s 95.1 0.34 1.2E-05 40.7 12.4 164 14-189 95-309 (368)
106 2pl2_A Hypothetical conserved 95.1 0.18 6.3E-06 40.3 10.2 104 14-128 70-184 (217)
107 3u4t_A TPR repeat-containing p 95.0 0.85 2.9E-05 36.5 14.3 151 18-183 4-160 (272)
108 2yhc_A BAMD, UPF0169 lipoprote 95.0 1.1 3.6E-05 35.8 14.8 31 97-127 149-179 (225)
109 1hxi_A PEX5, peroxisome target 95.0 0.15 5.3E-06 37.2 8.8 97 20-128 20-118 (121)
110 2pl2_A Hypothetical conserved 94.9 0.95 3.3E-05 36.0 14.2 148 17-183 5-169 (217)
111 2y4t_A DNAJ homolog subfamily 94.9 0.97 3.3E-05 39.1 15.2 161 18-189 178-353 (450)
112 2xev_A YBGF; tetratricopeptide 94.6 0.21 7E-06 35.5 8.6 62 64-128 9-72 (129)
113 1w3b_A UDP-N-acetylglucosamine 94.6 0.41 1.4E-05 41.0 11.9 101 16-128 236-338 (388)
114 4gcn_A Protein STI-1; structur 94.4 0.17 5.7E-06 37.2 7.8 63 60-128 11-75 (127)
115 2v5f_A Prolyl 4-hydroxylase su 94.3 0.21 7E-06 35.8 7.9 73 63-135 11-87 (104)
116 4gco_A Protein STI-1; structur 94.3 0.11 3.7E-06 38.4 6.5 62 61-128 17-80 (126)
117 3sz7_A HSC70 cochaperone (SGT) 94.3 0.21 7.3E-06 37.7 8.4 69 54-128 8-78 (164)
118 2h6f_A Protein farnesyltransfe 94.3 0.25 8.5E-06 44.1 9.9 105 12-128 92-199 (382)
119 3ieg_A DNAJ homolog subfamily 94.2 1.9 6.7E-05 35.3 16.5 26 102-127 241-266 (359)
120 2xpi_A Anaphase-promoting comp 94.2 1.4 4.7E-05 39.8 14.8 100 17-128 373-474 (597)
121 3mv2_B Coatomer subunit epsilo 94.0 1.2 4.1E-05 39.0 13.7 124 19-154 102-230 (310)
122 3fp2_A TPR repeat-containing p 94.0 1.6 5.4E-05 38.6 14.7 154 17-189 243-402 (537)
123 4gyw_A UDP-N-acetylglucosamine 94.0 0.39 1.3E-05 46.7 11.4 99 17-127 9-109 (723)
124 3fp2_A TPR repeat-containing p 94.0 0.19 6.4E-06 44.8 8.6 106 17-128 344-461 (537)
125 2y4t_A DNAJ homolog subfamily 94.0 0.33 1.1E-05 42.1 10.0 104 13-128 22-127 (450)
126 1elr_A TPR2A-domain of HOP; HO 94.0 0.29 1E-05 34.1 8.0 63 59-127 6-70 (131)
127 4gyw_A UDP-N-acetylglucosamine 93.9 0.45 1.5E-05 46.3 11.6 126 13-154 39-164 (723)
128 1w3b_A UDP-N-acetylglucosamine 93.9 0.35 1.2E-05 41.4 9.8 64 59-128 239-304 (388)
129 3gyz_A Chaperone protein IPGC; 93.8 0.11 3.9E-06 40.1 6.0 64 61-128 40-103 (151)
130 1hxi_A PEX5, peroxisome target 93.7 0.17 5.8E-06 36.9 6.5 59 64-128 24-84 (121)
131 3q49_B STIP1 homology and U bo 93.6 0.29 1E-05 35.1 7.6 64 59-128 11-76 (137)
132 1xnf_A Lipoprotein NLPI; TPR, 93.6 1 3.5E-05 35.8 11.6 70 53-128 39-110 (275)
133 2gw1_A Mitochondrial precursor 93.6 2.4 8.2E-05 37.0 15.0 103 13-128 233-337 (514)
134 2xcb_A PCRH, regulatory protei 93.6 0.16 5.5E-06 37.7 6.2 61 62-128 23-85 (142)
135 3urz_A Uncharacterized protein 93.5 1.3 4.3E-05 35.0 12.0 62 61-128 58-121 (208)
136 1elw_A TPR1-domain of HOP; HOP 93.5 0.2 6.9E-06 34.3 6.3 63 60-128 7-71 (118)
137 4abn_A Tetratricopeptide repea 93.4 0.68 2.3E-05 41.9 11.3 102 16-128 101-212 (474)
138 2vsy_A XCC0866; transferase, g 93.4 0.47 1.6E-05 43.5 10.3 104 13-128 19-124 (568)
139 2kck_A TPR repeat; tetratricop 93.3 0.11 3.8E-06 35.4 4.6 60 62-127 11-72 (112)
140 1na0_A Designed protein CTPR3; 93.2 0.21 7.1E-06 34.5 6.1 66 57-128 9-76 (125)
141 2vgx_A Chaperone SYCD; alterna 93.2 0.32 1.1E-05 36.7 7.6 63 60-128 24-88 (148)
142 3upv_A Heat shock protein STI1 93.2 0.46 1.6E-05 33.9 8.1 62 61-128 8-71 (126)
143 1wao_1 Serine/threonine protei 93.1 0.16 5.5E-06 46.5 6.6 91 26-128 15-107 (477)
144 2vyi_A SGTA protein; chaperone 92.8 0.26 8.8E-06 34.3 6.1 66 57-128 12-79 (131)
145 3cv0_A Peroxisome targeting si 92.6 0.76 2.6E-05 37.5 9.7 100 17-128 21-122 (327)
146 2ond_A Cleavage stimulation fa 92.4 4.2 0.00014 33.9 14.5 164 14-197 96-273 (308)
147 2lni_A Stress-induced-phosphop 92.4 0.79 2.7E-05 32.0 8.3 63 60-128 19-83 (133)
148 3qww_A SET and MYND domain-con 92.3 1.1 3.8E-05 40.8 11.1 91 31-123 312-410 (433)
149 2dba_A Smooth muscle cell asso 92.2 1.7 5.7E-05 31.0 10.0 70 56-128 27-98 (148)
150 2h6f_A Protein farnesyltransfe 92.1 0.6 2.1E-05 41.6 8.9 103 16-128 130-233 (382)
151 2if4_A ATFKBP42; FKBP-like, al 92.0 0.31 1.1E-05 42.2 6.8 107 16-128 178-297 (338)
152 2vsy_A XCC0866; transferase, g 92.0 0.71 2.4E-05 42.3 9.5 102 15-128 55-161 (568)
153 2fbn_A 70 kDa peptidylprolyl i 91.3 2.5 8.6E-05 32.5 10.8 70 59-128 40-121 (198)
154 1a17_A Serine/threonine protei 91.2 3.2 0.00011 30.0 11.0 100 16-125 46-147 (166)
155 2yhc_A BAMD, UPF0169 lipoprote 90.8 3.7 0.00013 32.4 11.7 106 17-128 4-129 (225)
156 1pc2_A Mitochondria fission pr 90.5 0.66 2.3E-05 36.6 6.6 36 93-128 69-104 (152)
157 1ouv_A Conserved hypothetical 90.0 2.6 8.8E-05 34.0 10.2 94 17-124 6-107 (273)
158 3n71_A Histone lysine methyltr 89.8 2.9 0.0001 38.6 11.4 92 30-123 322-421 (490)
159 4g1t_A Interferon-induced prot 89.8 0.2 6.8E-06 44.1 3.3 109 17-128 334-463 (472)
160 3k9i_A BH0479 protein; putativ 89.7 0.69 2.4E-05 32.8 5.7 58 70-128 3-60 (117)
161 2pzi_A Probable serine/threoni 89.6 0.42 1.5E-05 45.6 5.7 63 14-82 430-492 (681)
162 2pzi_A Probable serine/threoni 89.3 2.8 9.4E-05 39.9 11.2 113 60-183 436-552 (681)
163 2ooe_A Cleavage stimulation fa 89.3 9.2 0.00031 34.4 14.3 162 16-196 320-494 (530)
164 3rkv_A Putative peptidylprolyl 88.9 1.8 6.2E-05 32.2 7.9 71 58-128 12-96 (162)
165 4g1t_A Interferon-induced prot 88.7 4.4 0.00015 35.2 11.4 111 17-128 51-171 (472)
166 2l6j_A TPR repeat-containing p 88.3 2.8 9.6E-05 28.3 8.0 97 16-118 3-101 (111)
167 3ma5_A Tetratricopeptide repea 87.6 1.2 4.1E-05 30.9 5.7 36 93-128 5-40 (100)
168 3qwp_A SET and MYND domain-con 87.5 1.4 4.8E-05 40.0 7.5 68 54-123 326-399 (429)
169 3mkr_A Coatomer subunit epsilo 86.9 4.5 0.00016 33.8 10.0 60 60-128 104-163 (291)
170 1ouv_A Conserved hypothetical 85.6 9.8 0.00033 30.4 11.1 97 17-127 38-146 (273)
171 2hr2_A Hypothetical protein; a 84.7 5.8 0.0002 31.2 8.9 109 20-128 14-135 (159)
172 1na3_A Designed protein CTPR2; 84.0 1.7 5.8E-05 28.3 4.8 36 93-128 7-42 (91)
173 2c2l_A CHIP, carboxy terminus 83.8 2.4 8.2E-05 35.3 6.7 63 60-128 7-71 (281)
174 1p5q_A FKBP52, FK506-binding p 83.0 9.6 0.00033 32.5 10.4 102 12-125 191-295 (336)
175 1nzn_A CGI-135 protein, fissio 82.8 3.7 0.00013 31.2 6.7 37 92-128 71-107 (126)
176 4b4t_T 26S proteasome regulato 80.9 2.4 8.2E-05 36.4 5.6 93 131-230 99-204 (274)
177 2e2e_A Formate-dependent nitri 80.8 3.8 0.00013 30.7 6.2 64 59-128 46-114 (177)
178 2ond_A Cleavage stimulation fa 80.4 11 0.00037 31.2 9.6 96 19-125 136-233 (308)
179 3o48_A Mitochondria fission 1 80.4 4.7 0.00016 31.1 6.5 37 92-128 75-111 (134)
180 3bee_A Putative YFRE protein; 80.0 3.4 0.00012 29.0 5.3 57 67-127 17-75 (93)
181 2r5s_A Uncharacterized protein 78.7 0.97 3.3E-05 34.5 2.2 59 64-126 13-71 (176)
182 3rjv_A Putative SEL1 repeat pr 78.4 13 0.00046 29.0 9.1 53 70-124 102-158 (212)
183 2kat_A Uncharacterized protein 78.4 5.9 0.0002 27.4 6.3 34 95-128 19-52 (115)
184 3ffl_A Anaphase-promoting comp 77.7 4.6 0.00016 32.3 5.9 62 64-125 27-93 (167)
185 3ax2_A Mitochondrial import re 77.0 3.6 0.00012 28.4 4.5 40 101-143 23-62 (73)
186 1ihg_A Cyclophilin 40; ppiase 76.4 7.5 0.00026 34.0 7.6 69 60-128 226-306 (370)
187 3rjv_A Putative SEL1 repeat pr 75.9 23 0.0008 27.6 9.9 103 16-128 84-201 (212)
188 1y8m_A FIS1; mitochondria, unk 75.4 5.5 0.00019 31.1 5.7 36 93-128 75-110 (144)
189 2ooe_A Cleavage stimulation fa 75.3 16 0.00056 32.7 9.8 124 17-153 356-481 (530)
190 1om2_A Protein (mitochondrial 74.1 2.9 9.8E-05 30.4 3.5 51 100-153 25-78 (95)
191 1wao_1 Serine/threonine protei 73.8 3.8 0.00013 37.2 5.1 58 65-128 14-73 (477)
192 1kt0_A FKBP51, 51 kDa FK506-bi 73.6 24 0.00081 31.5 10.4 96 12-119 312-409 (457)
193 2v5f_A Prolyl 4-hydroxylase su 70.1 5.9 0.0002 27.8 4.5 56 97-152 7-63 (104)
194 1zu2_A Mitochondrial import re 69.6 11 0.00038 29.5 6.3 50 73-128 62-124 (158)
195 2if4_A ATFKBP42; FKBP-like, al 67.7 17 0.00059 30.9 7.8 101 16-128 229-332 (338)
196 2hr2_A Hypothetical protein; a 66.4 26 0.0009 27.3 7.9 71 58-128 12-97 (159)
197 2r5s_A Uncharacterized protein 64.9 40 0.0014 25.0 12.5 33 95-127 108-140 (176)
198 3qou_A Protein YBBN; thioredox 63.3 60 0.0021 26.5 14.2 102 20-127 120-251 (287)
199 3ly7_A Transcriptional activat 61.7 57 0.0019 29.1 10.1 58 66-128 286-343 (372)
200 2kc7_A BFR218_protein; tetratr 59.6 11 0.00039 24.9 4.1 30 99-128 4-33 (99)
201 4f3v_A ESX-1 secretion system 59.3 83 0.0028 26.7 10.8 93 21-123 106-199 (282)
202 3qou_A Protein YBBN; thioredox 57.5 4.1 0.00014 33.9 1.7 59 63-127 123-183 (287)
203 3sxm_A Transcriptional regulat 55.2 41 0.0014 24.3 7.0 26 167-192 101-126 (140)
204 4gq2_M Nucleoporin NUP120; bet 55.1 13 0.00045 37.1 5.2 52 63-122 816-867 (950)
205 2xm6_A Protein corresponding t 54.9 53 0.0018 28.9 8.8 51 70-126 380-434 (490)
206 2xm6_A Protein corresponding t 53.7 75 0.0026 27.9 9.6 28 97-124 185-216 (490)
207 1klx_A Cysteine rich protein B 52.3 55 0.0019 23.7 7.3 76 42-127 46-129 (138)
208 3e4b_A ALGK; tetratricopeptide 46.2 1.3E+02 0.0046 26.3 10.1 16 107-122 263-278 (452)
209 1klx_A Cysteine rich protein B 45.7 46 0.0016 24.1 5.9 72 42-125 16-91 (138)
210 4fhn_B Nucleoporin NUP120; pro 45.2 24 0.00082 35.8 5.4 53 62-122 817-869 (1139)
211 3e4b_A ALGK; tetratricopeptide 41.2 1.3E+02 0.0043 26.5 9.0 26 96-122 284-314 (452)
212 1rz4_A Eukaryotic translation 40.8 38 0.0013 28.0 5.1 55 170-230 103-157 (226)
213 3n71_A Histone lysine methyltr 38.0 2.3E+02 0.0079 25.7 11.9 109 15-125 349-465 (490)
214 3c18_A Nucleotidyltransferase- 37.3 75 0.0026 27.4 6.5 47 98-159 133-179 (290)
215 1y4m_A HERV-FRD_6P24.1 proviru 37.1 6 0.00021 25.6 -0.4 13 6-18 24-36 (53)
216 1mof_A Moloney murine leukemia 35.0 6.8 0.00023 25.5 -0.4 13 6-18 26-38 (55)
217 2hs5_A Putative transcriptiona 31.6 1.1E+02 0.0038 24.7 6.6 27 166-192 195-221 (239)
218 1ufm_A COP9 complex subunit 4; 29.1 5.5 0.00019 28.0 -1.7 24 207-230 12-35 (84)
219 3txn_A 26S proteasome regulato 28.5 3.1E+02 0.011 24.3 9.5 60 63-122 105-166 (394)
220 3sxy_A Transcriptional regulat 28.2 2.2E+02 0.0074 22.3 7.7 27 167-193 176-202 (218)
221 3t5v_A Nuclear mRNA export pro 25.4 71 0.0024 27.7 4.4 89 133-229 114-228 (316)
222 3bua_E HSNM1B, DNA cross-LINK 25.0 66 0.0023 18.6 2.7 22 133-154 3-25 (36)
223 3qwp_A SET and MYND domain-con 24.5 3.4E+02 0.012 23.9 9.0 61 60-123 291-357 (429)
224 3qww_A SET and MYND domain-con 24.3 3.7E+02 0.013 23.8 9.4 52 70-123 311-368 (433)
225 3u64_A Protein TP_0956; tetrat 23.4 72 0.0025 27.7 4.0 31 98-128 202-237 (301)
226 3ihu_A Transcriptional regulat 21.9 1.5E+02 0.0051 23.4 5.5 27 167-193 184-210 (222)
227 3ffl_A Anaphase-promoting comp 21.0 3E+02 0.01 21.5 8.7 65 56-120 62-147 (167)
228 4g26_A Pentatricopeptide repea 20.8 1.7E+02 0.0057 26.6 6.2 24 58-81 27-50 (501)
229 2ajj_A NS5A, nonstructural pro 20.4 1.2E+02 0.0042 16.8 3.3 23 199-222 2-26 (28)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-64 Score=476.44 Aligned_cols=230 Identities=39% Similarity=0.664 Sum_probs=191.6
Q ss_pred ccccccccchhhhHHHHHHHHHHHHHhhcccHH----------HHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcC
Q psy9817 2 SKITSENRRTSDLIAAKCYFYHSRVHELTNNLD----------KVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYN 71 (231)
Q Consensus 2 ~~~~~~~~r~~d~~~ak~~~y~~~~~e~~~~l~----------~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~ 71 (231)
+++++.|||+||.++||+|||||++||+++.+. +||+.|++++|||++|||++||++++|+|+|+|++.|
T Consensus 166 ~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~ 245 (523)
T 4b4t_S 166 NLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNG 245 (523)
T ss_dssp -------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999988775 4999999999999999999999999999999999999
Q ss_pred ChhhHHhhhhccCCCCC-CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh-hhhhHHHHHHHHHHHHHHhcC
Q psy9817 72 LYDQADKLVKKSAFPEN-ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT-AAVGFRQTTQKLAVVVELLLG 149 (231)
Q Consensus 72 ~~~~a~~l~~~~~~p~~-~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~~~~~~~ilk~lI~v~LllG 149 (231)
.|++|.++++++.||+. ++++|+++|+||+||+++++++|++|+++|++|+++||++ .+.||++.++|++|||+||+|
T Consensus 246 ~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG 325 (523)
T 4b4t_S 246 EVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMG 325 (523)
T ss_dssp CSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcC
Confidence 99999999999999986 7889999999999999999999999999999999999986 467999999999999999999
Q ss_pred CCCCHHHhhHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q psy9817 150 DIPDRQIFRQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPA 229 (231)
Q Consensus 150 ~iP~~~ll~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~YsrIsl~ 229 (231)
++|++++|.++.+++.|.||.+|++|||.||+.+|++++++|+.+|.+||||+||+||+++|+|++||+++++|||||++
T Consensus 326 ~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~ 405 (523)
T 4b4t_S 326 DIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLR 405 (523)
T ss_dssp CCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHH
T ss_pred CCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy9817 230 KI 231 (231)
Q Consensus 230 di 231 (231)
||
T Consensus 406 dI 407 (523)
T 4b4t_S 406 DI 407 (523)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 2
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-44 Score=333.25 Aligned_cols=201 Identities=14% Similarity=0.177 Sum_probs=173.7
Q ss_pred cccHHHHHHHHHHHHHHHhh-cC---------CcchhHHHHHHHHHHHHhcCChhhHHhhhhc----cCCCC--CCCchh
Q psy9817 30 TNNLDKVRSFLNARLRIATL-RN---------DFEGQAVLINCLLRNYLHYNLYDQADKLVKK----SAFPE--NASNNE 93 (231)
Q Consensus 30 ~~~l~~i~~~l~~~~r~~~l-r~---------d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~----~~~p~--~~~~~~ 93 (231)
.+.++.+.+.+..++..+.- |+ ..++..+++|+|+|+||++|++++|++++++ ..+|+ ..+.+|
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 34567777777777776632 33 2467888899999999999999999999953 23343 357799
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh-CChhh----hhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHHhhcccc
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRK-APQTA----AVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVLRRALSP 168 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~-~p~~~----~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~~~~L~~ 168 (231)
+|||+||+||+++++++|++|+++|++|+++ ||... +.+|+++|+||||||+|++|++|+++++++|.. +.|.|
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~-~~L~~ 297 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLS-QETID 297 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSC-HHHHH
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccch-HHHHH
Confidence 9999999999999999999999999999999 99753 489999999999999999999999999997532 56777
Q ss_pred -hHHHHHHHHcCCHHHHHHHHHHcchhhhhcch-HHHHHHHHHHHHHHHHHHH----HHHh--ccccCCCC
Q psy9817 169 -YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYT-FKLILRLRHNVIKTAIRSI----GASY--SRITPAKI 231 (231)
Q Consensus 169 -Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~-y~Lv~rlr~~v~R~liRki----~l~Y--srIsl~di 231 (231)
|.+|++|||.||+.+|++++++|+++|+++|+ |+|++|||++|||+++||| .++| +|||++||
T Consensus 298 ~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i 368 (455)
T 3t5v_B 298 NWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLI 368 (455)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHH
Confidence 99999999999999999999999999999999 9999999999999999999 4557 89998764
No 3
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=7.9e-41 Score=282.79 Aligned_cols=144 Identities=17% Similarity=0.300 Sum_probs=130.8
Q ss_pred cCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhHHHH
Q psy9817 83 SAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQAVL 162 (231)
Q Consensus 83 ~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~~~~ 162 (231)
+.+++..|++|+|+|+||+||+++++++|++|+++|++|+++||.. +.+|++.|++|||||+|++|++|++++++
T Consensus 2 ~~~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~---- 76 (203)
T 3t5x_A 2 SHMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKMLLGHMPTVELLK---- 76 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHTTCEECHHHHH----
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHcCCCCCHHHhh----
Confidence 4567778889999999999999999999999999999999999986 58999999999999999999999999998
Q ss_pred hhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHH--HhccccCCCC
Q psy9817 163 RRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGA--SYSRITPAKI 231 (231)
Q Consensus 163 ~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l--~YsrIsl~di 231 (231)
++.+.+|.+|++|||+||+.+|++++++|+++|++||+|++++|+|++|+|+++|||++ .|+|||++||
T Consensus 77 ~~~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i 147 (203)
T 3t5x_A 77 KYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAF 147 (203)
T ss_dssp HTTCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHH
T ss_pred hCchhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 45567899999999999999999999999999999999999999999999999999998 5999999864
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.44 E-value=4.8e-12 Score=116.18 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=136.3
Q ss_pred HHHHHHHhcCChhhHHhhhhcc-----CCCCCCCchhhHHHHhhHHHHHH-HhhcHHHHHHHHHHHHHhCChhhhhhHHH
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKS-----AFPENASNNEWARFHFYLGRIKA-VRLEYSTAHKNLVQALRKAPQTAAVGFRQ 135 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~-----~~p~~~~~~~~v~Y~YY~Gri~~-~~~~y~~A~~~L~~A~~~~p~~~~~~~~~ 135 (231)
+-.+.|...+++..++..+.++ ..| .+..-+..+..+.|.+++ .+++|.+|...|-.|+..-+. .......
T Consensus 144 le~~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~-~~~~~~~ 220 (394)
T 3txn_A 144 LESKTYHALSNLPKARAALTSARTTANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS-VDSVKAL 220 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc-cccHHHH
Confidence 3479999999999999888432 111 123577999999999999 899999999999999965443 2345677
Q ss_pred HHHHHHHHHHHhcCCCCCHH-HhhHHHHh----hcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHH-HHHHHHH
Q psy9817 136 TTQKLAVVVELLLGDIPDRQ-IFRQAVLR----RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFK-LILRLRH 209 (231)
Q Consensus 136 ~ilk~lI~v~LllG~iP~~~-ll~~~~~~----~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~-Lv~rlr~ 209 (231)
.+++|++++.|++|..|+.. ++.++... +.+.++.+|+.|++.||+..|.+++++++..|..|.... -+..|+.
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 89999999999999988764 44444322 233458899999999999999999999999999998765 6899999
Q ss_pred HHHHHHHHHHHHHhccccCCCC
Q psy9817 210 NVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 210 ~v~R~liRki~l~YsrIsl~di 231 (231)
.+....++++...|+||++++|
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~i 322 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHV 322 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHH
T ss_pred HHHHHHHHHHhHhhceeeHHHH
Confidence 9999999999999999998764
No 5
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.42 E-value=6.7e-13 Score=113.48 Aligned_cols=164 Identities=13% Similarity=0.090 Sum_probs=129.7
Q ss_pred HHHHHhcCChhhHHhhhhc--------cCCCCCCCch--hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh--hh
Q psy9817 64 LRNYLHYNLYDQADKLVKK--------SAFPENASNN--EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA--AV 131 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~--------~~~p~~~~~~--~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~--~~ 131 (231)
++.++..++++.|.+++++ ..+|+..+++ +.+++-|+.|.+.+++.++.+|+++.+.+++..+.+. ..
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s 93 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPS 93 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCC
Confidence 5777889999999999975 3566655554 4789999999999999999999999999999877642 35
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHhhHHH-----Hh--hcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHH
Q psy9817 132 GFRQTTQKLAVVVELLLGDIPDRQIFRQAV-----LR--RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLI 204 (231)
Q Consensus 132 ~~~~~ilk~lI~v~LllG~iP~~~ll~~~~-----~~--~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv 204 (231)
+++.+++.+.+++.|.+|++|++..+-+.. ++ ..+.+...+.+|+..||..+|-+..++..... ...++
T Consensus 94 ~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~----~~~~~ 169 (229)
T 4b0z_A 94 SRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPE----FSYFM 169 (229)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGG----GHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccch----HHHHH
Confidence 688999999999999999999876543311 11 11344678999999999999999998764321 22467
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCC
Q psy9817 205 LRLRHNVIKTAIRSIGASYSRITPAKI 231 (231)
Q Consensus 205 ~rlr~~v~R~liRki~l~YsrIsl~di 231 (231)
+.+...+-.+.++.++.+|++||++|+
T Consensus 170 ~~l~~~vR~~~l~~i~kaY~~i~l~~~ 196 (229)
T 4b0z_A 170 KIVMSMVRNEIATCAEKVYSEIPLSNA 196 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 777777778888999999999998764
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.5e-12 Score=118.50 Aligned_cols=222 Identities=16% Similarity=0.086 Sum_probs=171.9
Q ss_pred cchhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC---C
Q psy9817 9 RRTSDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA---F 85 (231)
Q Consensus 9 ~r~~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~---~ 85 (231)
+--++..-|++....+..+|-.|.+.++...|-...+-..-..|.....-+.....|.|+..+++..|+.++.+.. +
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 3345566789999999999999999999988877666543334444444456678999999999999999986642 2
Q ss_pred CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhH-HHHh-
Q psy9817 86 PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQ-AVLR- 163 (231)
Q Consensus 86 p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~-~~~~- 163 (231)
+...+..-++.|+.+.|++++.+++|.+|..++..++..............++++.|.+-++.+..|.++-+.+ ..-.
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~ 288 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN 288 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc
Confidence 22233457899999999999999999999999999997533322245567788888888788787887754433 2222
Q ss_pred --hcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchH-------HHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy9817 164 --RALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-------KLILRLRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 164 --~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y-------~Lv~rlr~~v~R~liRki~l~YsrIsl~d 230 (231)
..+.+|..|+++...+++..|..+++.++..+..|... ..+..|+..|+...+++++..|+||++++
T Consensus 289 ~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~ 364 (445)
T 4b4t_P 289 NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLR 364 (445)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHH
T ss_pred cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHH
Confidence 24556999999999999999999999998877766543 46788999999999999999999999864
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=9.7e-10 Score=97.56 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCC--CCC-CC
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAF--PEN-AS 90 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~--p~~-~~ 90 (231)
.+-|+++...+..++-.+......+.+-..++.....+|......+.+.+.+.|...++++.|..++.++.. |.. .+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 356889999999999999999998888777776655666677777888899999999999999999854321 111 12
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh---hhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHH----
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA---AVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVL---- 162 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~---~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~---- 162 (231)
...+.+++.+.|.++..+++|.+|..++..|++..+... .........++.+...++.+..+.. ..+..+..
T Consensus 212 ~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 291 (434)
T 4b4t_Q 212 TQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETY 291 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHh
Confidence 356789999999999999999999999999998654321 1233445566666666665433222 11211000
Q ss_pred -hhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchH-HHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy9817 163 -RRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-KLILRLRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 163 -~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y-~Lv~rlr~~v~R~liRki~l~YsrIsl~d 230 (231)
......+..++.+...+++..|.+.++.+...+..|... ..+..+...+....++++...|+||++++
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~ 361 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISH 361 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHH
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 112234778999999999999999999999988888865 58899999999999999999999999864
No 8
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=6e-07 Score=82.00 Aligned_cols=173 Identities=12% Similarity=0.130 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhccC--CC--CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh-hh
Q psy9817 56 QAVLINCLLRNYLHYNLYDQADKLVKKSA--FP--ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT-AA 130 (231)
Q Consensus 56 ~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p--~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~-~~ 130 (231)
...+-..+.+.|+..|..+.|+++++++. +. +.....-...|++..|.++..+++|.+++.+...++...+.. ..
T Consensus 126 ~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~ 205 (393)
T 4b4t_O 126 ILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSI 205 (393)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccC
Confidence 34445567899999999999999996542 11 111122335555557888889999999999999999765532 22
Q ss_pred hhHHHHHHHHHHHHHHhcCC-CCCH-HHhhHHHHhh-----cccchHHHHHHHHcCCHHHHHHHHHHcchh--hhhcchH
Q psy9817 131 VGFRQTTQKLAVVVELLLGD-IPDR-QIFRQAVLRR-----ALSPYFQLTQAVRMGELQKFNEVLTTYGNQ--FRTDYTF 201 (231)
Q Consensus 131 ~~~~~~ilk~lI~v~LllG~-iP~~-~ll~~~~~~~-----~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~--f~~dg~y 201 (231)
....+..+.+.+++..++|. +|.+ +++..|.++. ...++.+|.+++..||+.+|++.++.|... +...+.-
T Consensus 206 ~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~ 285 (393)
T 4b4t_O 206 TLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHES 285 (393)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHH
Confidence 45666777888888888765 7777 5777665432 223478999999999999999998877654 4445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy9817 202 KLILRLRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 202 ~Lv~rlr~~v~R~liRki~l~YsrIsl~d 230 (231)
.+.+++|..++-.++- ...|.+||+++
T Consensus 286 ~l~~kirll~l~~l~~--~~~~~~i~f~~ 312 (393)
T 4b4t_O 286 FLRQKICLMTLIETVF--VKNIRMLSFED 312 (393)
T ss_dssp HHHHHHHHHHHHHHHC--SSSCCCEEHHH
T ss_pred HHHHHHHHHHHHHHhc--cCCCCcCcHHH
Confidence 6777887776655431 11345566543
No 9
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.12 E-value=0.00011 Score=62.73 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-CChhhHHhhhhcc--CCCCCCCch
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY-NLYDQADKLVKKS--AFPENASNN 92 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~-~~~~~a~~l~~~~--~~p~~~~~~ 92 (231)
.|.+|.-.+.++...++.+.....+-.++......++..+.+...+.+-.+|.+. +.++.|...+.+. .+|+.....
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 4778888999998888888888877777776655566666777778888999995 9999999888654 234322223
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhh-HHHHHHHHHHHHHHhcCCCCCH-HHhhH-----HHHhhc
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVG-FRQTTQKLAVVVELLLGDIPDR-QIFRQ-----AVLRRA 165 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~-~~~~ilk~lI~v~LllG~iP~~-~ll~~-----~~~~~~ 165 (231)
.....+.-+|.++.-+++|.+|.++++.|+...|.+.... .....+.-+..+.+-+|+.+.. ..+.+ |.....
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 4456677889999999999999999999999988752211 1222344445556667876543 22221 211110
Q ss_pred --ccchHHHHHHHHcCCHHHHHHHHHHcchhhhhcchH-HHHHHHHH
Q psy9817 166 --LSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTF-KLILRLRH 209 (231)
Q Consensus 166 --L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y-~Lv~rlr~ 209 (231)
..-+..+..++..||...|.++++.+.....-|... .++.|++.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 011456788898999999999999997654445444 35555554
No 10
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=6.7e-05 Score=68.90 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=108.0
Q ss_pred HHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHH
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk 139 (231)
.++++++..+++..+...+.+.. +.+......+.++..|.|++++..++|.+|..+|..++...... ..--...+.+
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~-e~~~~~~~~~ 251 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI-ELTSYESIAT 251 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS-CHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc-chhhHHHHHH
Confidence 34799999999999999986542 11112234667999999999999999999999999999765543 2333455678
Q ss_pred HHHHHHHhcCCCCCH--HHhhHHHHhhc------ccchHHHHHHHHcCCHHHHHHH-HHHcchhhhhcchHH-HHHHHHH
Q psy9817 140 LAVVVELLLGDIPDR--QIFRQAVLRRA------LSPYFQLTQAVRMGELQKFNEV-LTTYGNQFRTDYTFK-LILRLRH 209 (231)
Q Consensus 140 ~lI~v~LllG~iP~~--~ll~~~~~~~~------L~~Y~~L~~AVr~Gdl~~F~~~-l~~~~~~f~~dg~y~-Lv~rlr~ 209 (231)
|.+++.++...-++. .++..+..+.- +.+...++.+.-.++...|-+. ++.+...+..|.... -+.-+..
T Consensus 252 y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~ 331 (429)
T 4b4t_R 252 YASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVR 331 (429)
T ss_dssp HHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHH
Confidence 888888876432211 12333333222 2335567888888888887654 455444333332111 2333444
Q ss_pred HHHHHHHHHHHHHhccccCCC
Q psy9817 210 NVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 210 ~v~R~liRki~l~YsrIsl~d 230 (231)
.+....+..+...|++|+++.
T Consensus 332 ~ir~~~l~q~~~~Ys~I~l~~ 352 (429)
T 4b4t_R 332 EMRRKVYAQLLESYKTLSLKS 352 (429)
T ss_dssp HHHHHHHHHHHHTCSEEEHHH
T ss_pred HHHHHHHHHHhHHhceeeHHH
Confidence 444455667788999998753
No 11
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.02 E-value=0.00013 Score=53.98 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
...|.+++..+..+...++.++....+-.++..+...++........+.+-..|+..+.++.|...+.+.. .|+....
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 35678899999999999999988888888777766566777777778888999999999999999986531 1222223
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
...+..++.+|.++...+++.+|.+.++.|+..++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999987654
No 12
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.79 E-value=0.00051 Score=58.86 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
++.+|.-.+.++...++.+.....+-.++......++....+...+.+-.+|.+ +.++.|...+.+.. +|+......
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 466777777777777777777776666666554445555666667777888888 99999988885441 232222335
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhhcc------
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRRAL------ 166 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~~L------ 166 (231)
....+.-+|.++.-.++|.+|.++++.|+..+|...........+.-+..+.+-+|+.... ..+.+-.+.+..
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~ 233 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHH
Confidence 5677888999999999999999999999998776422222222344444555556875443 223221000010
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHc
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTY 191 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~ 191 (231)
.....+..++..||...|.+ +.++
T Consensus 234 ~~l~~l~~~~~~~d~~~~~~-~~~~ 257 (307)
T 2ifu_A 234 AALEDLLQAYDEQDEEQLLR-VCRS 257 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HTTS
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHhC
Confidence 11346788899999999999 4434
No 13
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.65 E-value=0.0022 Score=49.87 Aligned_cols=138 Identities=10% Similarity=-0.011 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC-Cc
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA-SN 91 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~-~~ 91 (231)
..+.+++..+..+...++.+.....+-.++..+...+++.......+.+-.+|...+.++.|...+.+.. .+... ..
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 4578899999999999999999888888887776566777777778888999999999999999885431 11111 12
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP 152 (231)
...+.-++.+|.++...+++.+|..++..|+..++........-.++..+--+..-+|+..
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 2567788999999999999999999999999876543212222233333333444456543
No 14
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.63 E-value=0.0023 Score=55.84 Aligned_cols=140 Identities=10% Similarity=0.009 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCC-c
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS-N 91 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~-~ 91 (231)
+..-.+|+.+..+...++.+.....+-.++..+....|+...+...+.+-..|...|.++.|...+.++ .+++... .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 334456667788888888888888777776655444566667777888889999999999999888554 2233222 3
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
...+.-++.+|.++.-.++|.+|.+++..|+..+|........-.++.-+--+-.-+|+....
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 566778889999999999999999999999988775421222233333334444456765543
No 15
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.55 E-value=0.0031 Score=55.02 Aligned_cols=180 Identities=12% Similarity=0.037 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~ 90 (231)
+.+....||+.+..+-..++.+.....+-.+...+....|+...+...+.+-..|.+.+.++.|...+.++ .+|....
T Consensus 97 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 97 GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT
T ss_pred cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 34555567777888878888888888877777655444666677777888889999999999999888654 2233222
Q ss_pred -chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHh-----
Q psy9817 91 -NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLR----- 163 (231)
Q Consensus 91 -~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~----- 163 (231)
....+.-++.+|.++.-.++|.+|.+++..|+..++........-.++.-+--+-.-+|+.... ..+.+ .+.
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~-al~~~~~~ 255 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK-AAKVSREK 255 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHhh
Confidence 2356778889999999999999999999999987664211222223333333344456776543 22221 111
Q ss_pred h---cccchHHHHHHH-HcCCHHHHHHHHHHcch
Q psy9817 164 R---ALSPYFQLTQAV-RMGELQKFNEVLTTYGN 193 (231)
Q Consensus 164 ~---~L~~Y~~L~~AV-r~Gdl~~F~~~l~~~~~ 193 (231)
. ....+..+..+. +.|+..+-.+.+++--.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 011245555544 56887665555554433
No 16
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.0012 Score=56.62 Aligned_cols=136 Identities=14% Similarity=0.040 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+|+..+.++...++.+.....+-.++.......+........+.+-.+|.+.|.++.|...+.+.. .|+.......
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 44556666666666665555555555444443334444444455555666666666666666654321 1111112344
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP 152 (231)
...++.+|.++.-.+++.+|.+++..|+..++..........++..+.-+..-+|+..
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 5556666666666666667766666666655543222233334444444444456543
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.53 E-value=0.0012 Score=48.51 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
..+.+++..+..+...++.+.....+-.++.......++.........+-..|+..+.++.|...+.+.. .++.....
T Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 4456889999999999999999888888777665556666666677778899999999999999885431 11112234
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.....++.+|.++.-.+++.+|.+++..|+..+..
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999999999999987654
No 18
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.52 E-value=0.0013 Score=54.18 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
...+.+++..+..+...++.+.....+-.++..+....++.......+.+-..|++.|.++.|...+.+.. .|+....
T Consensus 180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 34466788888888888888888877777776665455556666667777889999999999988885431 2222223
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
......++.+|.++.-.+++.+|...+..|+...|.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 456778888999999999999999999999987665
No 19
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.42 E-value=0.0021 Score=49.94 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC-CcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN-DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~-d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~ 89 (231)
+...+.+++..+.++...++.+.....+-.++..+...+ ++.......+.+-.+|...|.++.|...+.+.. .++..
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999988888887775445 344666777888899999999999999885432 11112
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.....+.-+..+|.++.-.+++.+|.+++..|+..+..
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 22345666789999999999999999999999987665
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.41 E-value=0.002 Score=55.95 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHHHHhhccc-----------------HHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhH
Q psy9817 14 LIAAKCYFYHSRVHELTNN-----------------LDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQA 76 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~-----------------l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a 76 (231)
...+.+|+..+.++...++ .+.....+-.++.......+........+.+-..|+..|.++.|
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 242 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4567788888888888888 77777766666665544456566666777888999999999999
Q ss_pred HhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 77 DKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 77 ~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
...+.+.. .|+.......+..++.+|.++.-.+++.+|.+.+..|+..+|..........++..+.-+-+.+|+....
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99985431 1222223456778899999999999999999999999998876422233334444444455557876654
Q ss_pred -HHhhH-----HHHh---hcccchHHHHHHH-HcCCHHHHHHHHHHcchhhh
Q psy9817 155 -QIFRQ-----AVLR---RALSPYFQLTQAV-RMGELQKFNEVLTTYGNQFR 196 (231)
Q Consensus 155 -~ll~~-----~~~~---~~L~~Y~~L~~AV-r~Gdl~~F~~~l~~~~~~f~ 196 (231)
..+.+ +... .....|..+..+. +.||..+=.+.+++.-..+.
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 22321 1100 0011255566554 55886665555554444443
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.40 E-value=0.02 Score=46.93 Aligned_cols=140 Identities=15% Similarity=0.062 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
..+.+|+..+..+...++.+.....+-.++..+...+++.......+.+-..|+..|.++.|...+.+.. .|+.....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 120 (338)
T 3ro2_A 41 TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch
Confidence 3467888999999988888888888777776665556666666777788899999999999998885431 22222334
Q ss_pred hhHHHHhhHHHHHHHhhc--------------------HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy9817 93 EWARFHFYLGRIKAVRLE--------------------YSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~--------------------y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP 152 (231)
..+..++.+|.++...++ +.+|.+++..|+..++..........++..+.-+-+.+|+..
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 567788899999999999 999999999998776543212223334444444445567765
Q ss_pred CH
Q psy9817 153 DR 154 (231)
Q Consensus 153 ~~ 154 (231)
..
T Consensus 201 ~A 202 (338)
T 3ro2_A 201 DA 202 (338)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 22
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.38 E-value=0.0089 Score=51.96 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCC-cchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND-FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d-~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
.-.|.+|+..+.++...++.+.....+-.++.......+ ....+...+.+-.+|...|.++.|...+.++. .|+...
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC
Confidence 347889999999999999999988888888777655544 55666778888899999999999999886542 222222
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
....+.-++.+|.++.-+++|.+|.+++..|+..++........-.++..+--+-.-+|+.+..
T Consensus 220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 3466778888999999999999999999999986443211122233444444455557876553
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.38 E-value=0.0025 Score=54.59 Aligned_cols=140 Identities=16% Similarity=0.067 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
...+.+|...+.++...+..+.....+-.++.......++.......+.+-..|+..|.++.|...+.+.. .|+....
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 45567888999999999999888888877777665556666666677788899999999999999986531 2322233
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
...+..++.+|.++.-.+++.+|..++..|+..++..........++..+--+-.-+|+...
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 56688889999999999999999999999998876532222233334444444444676443
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.34 E-value=0.003 Score=54.86 Aligned_cols=139 Identities=14% Similarity=0.021 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
...+.+|+..+.++...++.+.....+-.++.......+........+.+-..|...|.++.|...+.+.. .|+....
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 34566889999999999999988888877777665555666666677788999999999999999986431 2322233
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCC
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP 152 (231)
......++.+|.++.-.+++.+|.++++.|+..++..........++..+.-+-.-+|+..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 4668888999999999999999999999999887764222223334444444444467643
No 25
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.21 E-value=0.0033 Score=46.95 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCc
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASN 91 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~ 91 (231)
+|+=.|..|.=-+..+-..+..+.....+-.++. .++... .+...+-.+|++.|.++.|...+.+..-- .
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~ 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-----RDPENA-ILYSNRAACLTKLMEFQRALDDCDTCIRL----D 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHhhHHHhhccHHHHHHHHHHHHHh----h
Confidence 5677788888888888788888887766644443 233322 33445578899999999999988765210 1
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.+.-++.+|.++.-.++|.+|.++++.|+...|.+
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 2346678999999999999999999999999999986
No 26
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.17 E-value=0.0094 Score=42.25 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC-ch
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS-NN 92 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~-~~ 92 (231)
.+.+|+..+..+...+..+.....+-.++.. ++.. ....+.+-.+|++.+.++.|...+.+.. .|+..+ ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTN-MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcc-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 3667888888888888888888766555442 2221 2344566788999999999999885432 132111 12
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.....++.+|.++.-.+++.+|.+++..|+...|.
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 33778899999999999999999999999998874
No 27
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.15 E-value=0.0069 Score=52.77 Aligned_cols=141 Identities=10% Similarity=-0.051 Sum_probs=99.0
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCC-cchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND-FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d-~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~ 89 (231)
+...|.+++..+.++...++.......+-.++.......+ +...+...+.+-.+|...|.++.|...+.++. .++..
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 3567888999999999999988888877777766543333 34566677888899999999999999885431 12112
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
.....+.-++.+|.++.-+++|.+|.+++..|+..+.....+.. ..++..+--+-.-+|+....
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHH
Confidence 23456778889999999999999999999999985443211222 33444444444556775543
No 28
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.12 E-value=0.018 Score=40.62 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~ 89 (231)
.|.-.+.+|+..+..+...++.+.....+-.++.. ++.. ......+-..|++.+.++.|...+.+.. .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-- 78 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPAN-AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-- 78 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCC-HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--
Confidence 35566788888999888888888777666444432 2211 2344556788999999999999986542 232
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|...+..|+...|.+
T Consensus 79 ----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 79 ----YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 25677899999999999999999999999998864
No 29
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.10 E-value=0.0051 Score=51.89 Aligned_cols=110 Identities=8% Similarity=0.036 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-----CCCCCC
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-----FPENAS 90 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-----~p~~~~ 90 (231)
.+..+++.+..+...+..+.....+-.++..+....+.++.....|.+-..|...|.++.|...+.++. .|+ .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~ 191 (293)
T 2qfc_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N 191 (293)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--C
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--c
Confidence 445567777777777777777776666555443335566667778888999999999999999986542 232 1
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
....+..++..|.++.-+++|.+|.++++.|+..++.
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1223478889999999999999999999999987654
No 30
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.00 E-value=0.0089 Score=45.72 Aligned_cols=104 Identities=13% Similarity=-0.040 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+=.+..++-.+..+...++.+.....+-..+. .++... ...+.+-.+|.+.+.++.|...+.+.. .|+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--- 87 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-----LDHYDS-RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--- 87 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCcccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---
Confidence 444566788888888888888877765533322 233222 233456778999999999999986542 243
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-...+|++|.++.-.+++.+|..++..|+...|.+
T Consensus 88 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 88 ---EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred ---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 23567899999999999999999999999998864
No 31
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.95 E-value=0.03 Score=43.89 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCC----
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA---- 89 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~---- 89 (231)
.+.+|+..+.++...++.+.....+-.++.. ++.. ....+.+-.+|++.+.++.|...+.+. ..|+..
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 4678888999998888888877766554432 2222 234455678899999999999988654 345433
Q ss_pred ------CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 90 ------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 90 ------~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.......-++.+|.++.-.+++.+|.+.+..|+...|..
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 334567888999999999999999999999999999875
No 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.93 E-value=0.0087 Score=44.83 Aligned_cols=104 Identities=14% Similarity=-0.008 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+=.+..+|-.+..+...++.+.....+-..+. .++... .....+-.+|.+.+.++.|...+.+.. .|+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 84 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-----LDHYDA-RYFLGLGACRQSLGLYEQALQSYSYGALMDIN--- 84 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-----hCCccH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---
Confidence 344556678888888888888887766543332 233222 233445678899999999999986542 232
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-...+|.+|.++.-.+++.+|..++..|+...|.+
T Consensus 85 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 ---EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp ---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 23467889999999999999999999999988864
No 33
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.92 E-value=0.025 Score=39.48 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+|+..+..+...++.+.....+-..++. ++.. ....+.+-..|++.+.++.|...+.+.. .|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------ 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------ 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------
Confidence 3678889999998888888887766555442 1211 2345566788999999999999986542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|...+..++...|.+
T Consensus 76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 24567889999999999999999999999998875
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.89 E-value=0.11 Score=41.39 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
..+-..|+..+.++.|...+.+..- ....+.....++.+|.++.-.+++.+|...+..|+...|.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN 173 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 3344555666666666666544321 0011233445555666666666666666666666666554
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.11 Score=41.01 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC-CcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC----
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN-DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA---- 89 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~-d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~---- 89 (231)
+.+|+..+.++...++.+.....+-..+....... +..........+-..|.+.+.++.|...+.+.. .|+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 117 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence 56788889999888888888877766655442221 222224556677899999999999999885432 12100
Q ss_pred ----------------CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 90 ----------------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 90 ----------------~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
..++....++..|.++.-.++|.+|..++..|+...|.+. .++..+.-+-.-+|+.+.
T Consensus 118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~ 191 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPE 191 (258)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHH
T ss_pred HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHhCCHHH
Confidence 2345677888999999999999999999999999988742 122333334445677665
Q ss_pred H-HHhhHHHHh--hc-ccchHHHHHHH-HcCCHHHHHHHHH
Q psy9817 154 R-QIFRQAVLR--RA-LSPYFQLTQAV-RMGELQKFNEVLT 189 (231)
Q Consensus 154 ~-~ll~~~~~~--~~-L~~Y~~L~~AV-r~Gdl~~F~~~l~ 189 (231)
. ..+.+ .++ +. ...|..+..+. +.|+..+-.+.++
T Consensus 192 A~~~~~~-al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 192 AIADCNK-AIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH-HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4 23332 111 11 11255666655 5577654444443
No 36
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.83 E-value=0.039 Score=39.48 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHH
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWAR 96 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~ 96 (231)
.+|..+..+...++.+.....+-..+... -+++. .......+-.+|++.|.++.|...+.+. ..|+. .....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHH
Confidence 35666777777777777776654433321 11121 1123344567899999999999998654 23431 23456
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-+|.+|.++.-.+++.+|...++.++...|.+
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 78899999999999999999999999998875
No 37
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.81 E-value=0.014 Score=44.56 Aligned_cols=103 Identities=10% Similarity=0.074 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
.-.+..|+..+..+...++.+.....+-.++.. ++.. ....+.+-.+|++.+.++.|...+.+.. .|
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----- 76 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APAN-PIYLSNRAAAYSASGQHEKAAEDAELATVVDP----- 76 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Confidence 345778888899988888888888766554442 2222 3345556788999999999999986542 23
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+....+|.+|.++.-.++|.+|..++..|+...|.+
T Consensus 77 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 77 -KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 336788999999999999999999999999999976
No 38
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.79 E-value=0.016 Score=45.04 Aligned_cols=104 Identities=12% Similarity=-0.024 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+=.+.+||-.+..+...++.+.....+-..+. .++.... ..+.+=..|.+.+.++.|...+.+.. .|+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-----~~P~~~~-~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--- 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-----YDFYNVD-YIMGLAAIYQIKEQFQQAADLYAVAFALGKN--- 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH-HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---
Confidence 444566788888888888888888866543332 2333222 33445678999999999999987652 343
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-...+|.+|.++.-.+++.+|..+|..|+..+|.+
T Consensus 103 ---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 ---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 23568899999999999999999999999999975
No 39
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.73 E-value=0.03 Score=44.02 Aligned_cols=109 Identities=14% Similarity=0.028 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcch----------hHHHHHHHHHHHHhcCChhhHHhhhhccCC
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG----------QAVLINCLLRNYLHYNLYDQADKLVKKSAF 85 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~----------~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~ 85 (231)
.+..++-.+..+...++.+.....+-.+++......+... ...+...+-..|++.+.++.|...+.+..-
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4556777788887788888777766555442211111011 124455667889999999999998865421
Q ss_pred CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 86 PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 86 p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
- .++....+|..|.++.-.++|.+|...+..|+...|.+
T Consensus 117 ~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 117 I----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp H----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred h----CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 0 12346778999999999999999999999999998875
No 40
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.73 E-value=0.021 Score=47.96 Aligned_cols=126 Identities=7% Similarity=-0.038 Sum_probs=85.2
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-----CCCCCCchhhHHH
Q psy9817 23 HSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-----FPENASNNEWARF 97 (231)
Q Consensus 23 ~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-----~p~~~~~~~~v~Y 97 (231)
.+..+...+..+.....+-.++.......|..+...+.|.+-.+|+..+.++.|...+.++. .|. .....+..
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~ 198 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKV 198 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHH
Confidence 45555555566777766666655322234445566678888999999999999999986542 222 34577889
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCC
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGD 150 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~ 150 (231)
+|.+|.++.-+++|.+|.++++.|+..++........-.++-.+--+-.-+|+
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999877542122223333333334444553
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.69 E-value=0.12 Score=42.17 Aligned_cols=113 Identities=15% Similarity=0.069 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC--CcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN--DFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PEN 88 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~--d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~~ 88 (231)
|+-.+.+|+..+..+...++.+.....+-.++..+.... +........+.+-..|...+.++.|...+.+.. . ...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 455677889999999888998888887777666554333 444555667778899999999999999985442 1 000
Q ss_pred --CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 89 --ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 89 --~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
.........++.+|.++...+++.+|.+++..|+..+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 141 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 1135678889999999999999999999999999875
No 42
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.024 Score=40.98 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.|..|+-.+..+...++.+.....+-.+++. ++.. ......+-..|++.+.++.|...+.+.. .| +
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~ 70 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APED-ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------N 70 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------C
Confidence 3566777777777788888777666544432 2222 2444556788999999999999986542 23 2
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
....++.+|.++.-.++|.+|.+++..|+...
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 36678899999999999999999999999998
No 43
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.64 E-value=0.033 Score=42.31 Aligned_cols=108 Identities=10% Similarity=0.068 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc---CC---------cchhHHHHHHHHHHHHhcCChhhHHhhhhccC
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR---ND---------FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA 84 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr---~d---------~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~ 84 (231)
|..+.--+..+-..+........+-.++...... .+ ......+.+.+-.+|++.+.++.|...+.+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3445555555555666666666665555542111 11 11223445566788999999999998886542
Q ss_pred CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 85 FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 85 ~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-- .+..+.-+|..|.++.-.++|.+|...+..|+...|.+
T Consensus 91 ~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KR----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hc----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 10 12346788999999999999999999999999999975
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.041 Score=45.00 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CCC-
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PEN- 88 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr--~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~~- 88 (231)
...+.+|+..+..+...++.+.....+-.++...... .+........+.+-.+|...|.++.|...+.+.. . ...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999888888777766654322 3444555667778899999999999999985431 0 000
Q ss_pred -CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 89 -ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 89 -~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
......+..++.+|.++.-.+++.+|.+.+..|+..+|.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 113566788899999999999999999999999987665
No 45
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.036 Score=38.28 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+..|+-.+..+...++.+.....+-..+.. ++.. ......+-..|++.+.++.|...+.+.. .|+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHN-HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------W 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------c
Confidence 456777888887788888777666544432 2222 2344556778899999999999886542 232 3
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++..|.++.-.+++.+|...+..|+...|.+
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 5667889999999999999999999999988875
No 46
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.60 E-value=0.015 Score=48.91 Aligned_cols=112 Identities=10% Similarity=-0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc-CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR-NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr-~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
.+.+|...+.++...+..+.....+-.++...... .+......+.+.+-.+|++.+.++.|...+.++. .++.....
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 46678888999988888888888777777655433 4555666677788999999999999999986542 12222234
Q ss_pred hhHHHHhhHHHHHHHhh-cHHHHHHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRL-EYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~-~y~~A~~~L~~A~~~~p~ 127 (231)
.....++..|.++.-.+ +|.+|.++++.|+..+..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 66889999999999999 579999999999986543
No 47
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.58 E-value=0.01 Score=43.19 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
.-.+..|+..+..+...++.+.....+-.++.. ++.. ......+-.+|++.+.++.|...+.+.. .|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----- 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALELDG----- 74 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----
Confidence 345778888888888888888877666554432 2222 2345556788999999999999886542 23
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+....++.+|.++.-.+++.+|...+..|+...|.
T Consensus 75 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 -QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 34667889999999999999999999999998876
No 48
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.57 E-value=0.033 Score=47.01 Aligned_cols=173 Identities=12% Similarity=0.074 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWA 95 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v 95 (231)
..|---+..+...++.+.....+..++......+++...+...+.+-..|.+.|.++.|...+.++. .|+.......+
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455556667777777887777766666554445666667777888999999999999998886542 23333334567
Q ss_pred HHHhhHHHHHHHh-hcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhhc----cc--
Q psy9817 96 RFHFYLGRIKAVR-LEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRRA----LS-- 167 (231)
Q Consensus 96 ~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~~----L~-- 167 (231)
..+.-+|.++.-+ +++.+|.++++.|+...|........-.++.-+.-+-+-+|+.... ..+.+ .++.. ..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~ 196 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK-LIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHhcCCcccH
Confidence 7888999999997 9999999999999998775321222223344444444557876543 23332 11111 10
Q ss_pred ----chHHHHHHH-HcCCHHHHHHHHHHc
Q psy9817 168 ----PYFQLTQAV-RMGELQKFNEVLTTY 191 (231)
Q Consensus 168 ----~Y~~L~~AV-r~Gdl~~F~~~l~~~ 191 (231)
.|..+..+. ..||..+=...+++.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 134444443 568876655555543
No 49
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.035 Score=40.39 Aligned_cols=105 Identities=13% Similarity=-0.007 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcch--hHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEG--QAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN 88 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~--~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~ 88 (231)
+.-.+..|+-.+..+...++.+.....+-..+ ..+++. .......+-..|++.+.++.|...+.+.. .|+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~- 97 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQAL-----GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG- 97 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-
Confidence 34457778888888888888887776554433 233332 24445566788999999999999886542 232
Q ss_pred CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 89 ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 89 ~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++..|.++.-.+++.+|..++..|+...|.+
T Consensus 98 -----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 -----DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 26678899999999999999999999999998875
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.51 E-value=0.047 Score=43.73 Aligned_cols=112 Identities=18% Similarity=0.079 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CCC-
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PEN- 88 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr--~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~~- 88 (231)
+-.+.+|+..+.++...++.+.....+-.++..+... .+........+.+-.+|...+.++.|...+.+.. . .+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 5568889999999999999998888887777665433 4445566667788899999999999999985431 1 000
Q ss_pred -CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 89 -ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 89 -~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
...+..+..++.+|.++.-.+++.+|.+.+..|+..+
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1125678889999999999999999999999999873
No 51
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.50 E-value=0.022 Score=47.82 Aligned_cols=112 Identities=10% Similarity=-0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhH-HHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQA-VLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~-~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
.+.+|+..+.++...+..+.....+-.++.......+..... .+.+.+-..|++.|.++.|...+.++. .++.....
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 477899999999999998888888877776554433333322 566777899999999999999986542 11111223
Q ss_pred hhHHHHhhHHHHHHHhhcHHHH-HHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTA-HKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A-~~~L~~A~~~~p~ 127 (231)
.....++.+|.++.-.+++.+| ..++..|+..+..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999 8899999976543
No 52
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.45 E-value=0.068 Score=42.79 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CC-
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR--NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PE- 87 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr--~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~- 87 (231)
+...+.+|+..+.++...++.+.....+-.++...... .+........+.+-.+|+..|.++.|...+.+.. . ..
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 35667889999999999999998888887777655332 2223445556677889999999999999985431 1 00
Q ss_pred -CCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 88 -NASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 88 -~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.......+..++.+|.++.-++++.+|.+.+..|+..+|.
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0113466788899999999999999999999999987554
No 53
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.42 E-value=0.041 Score=39.07 Aligned_cols=103 Identities=11% Similarity=-0.021 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
.-.+..|+..+..+...++.+.....+-..++ .++.. ......+-.+|++.+.++.|...+.+.. .|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-----RNPKD-AKLYSNRAACYTKLLEFQLALKDCEECIQLEP----- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-----TCTTC-HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----
Confidence 34566788888888888888877766644442 23322 3345566788999999999999986542 23
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+....++.+|.++.-.+++.+|..++..|+...|.+
T Consensus 82 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 82 -TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred -CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 235678899999999999999999999999998875
No 54
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.042 Score=47.88 Aligned_cols=104 Identities=12% Similarity=0.095 Sum_probs=73.4
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhH
Q psy9817 24 SRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYL 101 (231)
Q Consensus 24 ~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~ 101 (231)
+..++..+..+......-.++..+....+....+.+.+.|-+.|+..|.|+.|.+++... ..+......+.+.++...
T Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
T 4b4t_Q 102 EKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLE 181 (434)
T ss_dssp HHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 334444444444444444444444444455556667778899999999999999998542 112222346889999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
|+++...++|.+|...++.|....+.
T Consensus 182 ~~~~~~~~~~~~A~~~~~~al~~~~~ 207 (434)
T 4b4t_Q 182 SKVYHKLRNLAKSKASLTAARTAANS 207 (434)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999976554
No 55
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.32 E-value=0.066 Score=46.48 Aligned_cols=110 Identities=10% Similarity=-0.017 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc---------chhHHHHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF---------EGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~---------~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
++-.+.+|+..+..+...++.+.....+-.++.......+. .......+.+-.+|++.+.++.|...+.+.
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567889999999988888888887766555433111100 001344556678999999999999998654
Q ss_pred C--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 84 A--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 84 ~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
. .| +.+..+|.+|.++.-.++|.+|...|..|+...|.+
T Consensus 223 l~~~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 223 LELDS------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 2 23 336678999999999999999999999999999975
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.29 E-value=0.11 Score=38.70 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+..|+..+..+...++.+.....+-..+ ..++.. ......+-..|+..+.++.|...+.+.. .|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------ 74 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVY-----DADAFD-VDVALHLGIAYVKTGAVDRGTELLERSLADAPD------ 74 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTC-----CTTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HhCccC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Confidence 45667777777777777777776553322 222222 3344556778888999999988886532 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhh-cccchH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRR-ALSPYF 170 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~-~L~~Y~ 170 (231)
....++..|.++...+++.+|.+.+..|+...|.+. . ++..+.-+-.-+|+.... ..+.+ -.... ....+.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF-N-----VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-H-----HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHH
Confidence 245567788999999999999999999998877642 1 122222233345766544 23322 01111 112245
Q ss_pred HHHHHH-HcCCHHHHHHHHHH
Q psy9817 171 QLTQAV-RMGELQKFNEVLTT 190 (231)
Q Consensus 171 ~L~~AV-r~Gdl~~F~~~l~~ 190 (231)
.++.+. +.||..+-.+.+++
T Consensus 149 ~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 149 AIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 555543 66886665555544
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.28 E-value=0.26 Score=37.93 Aligned_cols=103 Identities=16% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-CChhhHHhhhhccCC-CCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY-NLYDQADKLVKKSAF-PENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~-~~~~~a~~l~~~~~~-p~~~~~~~~ 94 (231)
+.+|+..+.++...++.+.....+-.++.. ++.. ......+-..|+.. +.++.|...+.+..- |. .++.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~ 112 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI-----KPDS-AEINNNYGWFLCGRLNRPAESMAYFDKALADPT---YPTP 112 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTT---CSCH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcC---Ccch
Confidence 345555555555555555555444332221 1111 12233445666677 777777766644321 11 1233
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++..|.++.-.+++.+|...+..++...|.+
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4555667777777777777777777777766653
No 58
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.23 E-value=0.048 Score=41.68 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHH-HHhcCCh--hhHHhhhhccC--CCCCCC
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRN-YLHYNLY--DQADKLVKKSA--FPENAS 90 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~-Yf~~~~~--~~a~~l~~~~~--~p~~~~ 90 (231)
.+.+|+..+.++...+..+.....+-.++... +... .....+-.. |++.+.+ +.|...+.+.. .|+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--- 113 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENA-ELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--- 113 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---
Confidence 45678999999988888888877665544322 2222 233344455 8899998 99998886542 232
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.++|.+|...+..|+...|.+
T Consensus 114 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 114 ---EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred ---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 24677899999999999999999999999999975
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.23 E-value=0.24 Score=38.86 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+++..+.++...++.+.....+-..+.. ++. .......+-.+|.+.+.++.|...+.+.. .|+
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------ 123 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALEL-----DSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------ 123 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------
Confidence 4567888888888888877777655444332 111 23444556778888999999988886542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++..|.++.-.+++.+|...+..|+...|..
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 13456778999999999999999999999888764
No 60
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.21 E-value=0.069 Score=45.31 Aligned_cols=138 Identities=12% Similarity=0.009 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
++..|---+.++...++.+.....+..+.......++....+...+.+-.+|.+.+.++.|...+.+.. +++......
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344455556667777888888877777776665556667777778888899999999999999886541 233223345
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
.+..+.-+|.++.- ++|.+|.++++.|+...|........-.++.-+--+-.-+|+.+..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 67788899999988 9999999999999988775321222223344444444557887654
No 61
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.21 E-value=0.11 Score=38.41 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+..|+-.+..+...++.+.....+-.++.. ++.. ......+-.+|.+.+.++.|...+.+.. .|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------ 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKK------ 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------
Confidence 3556788888888888888877766555442 2222 2334456778899999999999886542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++..|.++.-.+++.+|..++..|+...|.+
T Consensus 80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 24567889999999999999999999999998875
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.035 Score=44.11 Aligned_cols=101 Identities=13% Similarity=-0.004 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
++-.+.+|+..+..+...++.+.....+-.++.. ++. .....+.+-.+|++.|.++.|...+.+.. .|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---- 204 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP---- 204 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----Ccc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH----
Confidence 3445667778888887777777776655444432 111 12344556677888888888888875442 22
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
+....++.+|.++.-.+++.+|.+.+..|+...
T Consensus 205 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 --NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 235567788888888888888888888888877
No 63
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.21 E-value=0.095 Score=46.47 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhc----------CCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCC
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLR----------NDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFP 86 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr----------~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p 86 (231)
|..|+-.+..+...++.+.....+-.+++..... ........+.+.+-..|++.+.++.|...+.+..--
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 4457777777777778887777666666532110 012233445566778999999999999998665211
Q ss_pred CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 87 ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 87 ~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++....+|.+|.++.-.++|.+|.+.|+.|+...|.+
T Consensus 303 ----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 303 ----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 12346778999999999999999999999999999975
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.19 E-value=0.032 Score=42.79 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+=.+.+|+..+.++...+..+.....+...... ++. .......+-..+...+.++.|...+.+.. .|
T Consensus 35 ~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~---- 104 (184)
T 3vtx_A 35 DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-----DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNT---- 104 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----
Confidence 3445677888888888888887777665443321 111 11223344566777788888877775432 22
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
......+.+|.++.-.++|.+|.+.++.|+...|.+
T Consensus 105 --~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 105 --VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 224456677888888888888888888888777764
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.19 E-value=0.063 Score=42.73 Aligned_cols=104 Identities=11% Similarity=0.098 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCC-Cchhh
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA-SNNEW 94 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~-~~~~~ 94 (231)
.++++.+.++...+..+.....+-.++ ..++. .......+-.+|.+.+.++.|...+.+. ..|+.. .....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al-----~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 116 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAI-----KKNYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY 116 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HTTCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH-----HhCcc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 456667777777777666665443333 22222 2233444567788888888888877544 234321 11244
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+..++..|.++.-.++|.+|.+++..|+...|.
T Consensus 117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 577888888888888888888888888887776
No 66
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.16 E-value=0.032 Score=40.19 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 56 QAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 56 ~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.......+-.+|++.+.++.|...+.+. ..|+ ....++.+|.++.-.+++.+|.+.+..|+...|.+
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3344556678999999999999999765 2344 25678889999999999999999999999998875
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.16 E-value=0.13 Score=44.10 Aligned_cols=176 Identities=7% Similarity=-0.017 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC-C-c
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA-S-N 91 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~-~-~ 91 (231)
.+.++...+..+...+..+..+..+-.++..+...++........+.+-..|+..|.++.|...+.... .++.. + .
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 131 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 131 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccC
Confidence 445677777777778888888887777777665555666666667778899999999999998875431 11111 1 1
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhhc--cc
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRRA--LS 167 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~~--L~ 167 (231)
......+..+|.++...+++.+|..++..|+..+|...... ...++..+--+.+..|+...- ..+.+ -.+... ..
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 34566677899999999999999999999999988632111 223344444455567876543 23322 001111 10
Q ss_pred -chHHH---HH---HHHcCCHHHHHHHHHHcc
Q psy9817 168 -PYFQL---TQ---AVRMGELQKFNEVLTTYG 192 (231)
Q Consensus 168 -~Y~~L---~~---AVr~Gdl~~F~~~l~~~~ 192 (231)
.+... .. ....||..+-.+++++-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 11111 11 457788877777666543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.16 E-value=0.076 Score=40.63 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHH
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWAR 96 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~ 96 (231)
+.+|+-.+.++...|..++....+-.++. .|+.... ....+-.+|++.+.++.|...+.+..-. .++...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~-----~~p~~~~-~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 74 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK-----ADPNNVE-TLLKLGKTYMDIGLPNDAIESLKKFVVL----DTTSAE 74 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc----CchhHH
Confidence 56899999999999999988877755543 2333222 3345578899999999999988654210 022355
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhhcc-cchHHHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRRAL-SPYFQLT 173 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~~L-~~Y~~L~ 173 (231)
..+..|.++...+++.+|.+.+..|+...|.+. . +...+--+-.-+|+.... ..+++ -.+.+.. ..|..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~-----~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYA-D-----AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-H-----HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 677889999999999999999999999988752 1 233344455566776653 33332 1111111 2366666
Q ss_pred HHH-HcCCHH
Q psy9817 174 QAV-RMGELQ 182 (231)
Q Consensus 174 ~AV-r~Gdl~ 182 (231)
.+. +.|+..
T Consensus 149 ~~~~~~g~~~ 158 (184)
T 3vtx_A 149 LAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHCCCHH
Confidence 665 557743
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.14 E-value=0.17 Score=40.16 Aligned_cols=102 Identities=9% Similarity=-0.046 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARF 97 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y 97 (231)
..|+..+..+...++.+.....+-.++... .+.......+ +-..|++.+.++.|...+.+..- ..++....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~ 78 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT----NNQDSVTAYN-CGVCADNIKKYKEAADYFDIAIK----KNYNLANA 78 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHH----TTCSHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc----CCCCcHHHHH-HHHHHHHhhcHHHHHHHHHHHHH----hCcchHHH
Confidence 678888888888888888887775555422 1022233444 78899999999999999876521 01245677
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.+|.++.-+++|.+|.+.+..|+...|.+
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 8899999999999999999999999999975
No 70
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.13 E-value=0.076 Score=45.11 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhc
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~ 82 (231)
+.+++..+.++...++.+.....+-. + ........+..+|.+.|.++.|...+.+
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~----------~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ----------G-DSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT----------C-CSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC----------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34577777777777776666644311 1 1112333445566677777777666643
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.12 E-value=0.05 Score=38.11 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWA 95 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v 95 (231)
.+|+..+..+...+..+.....+-..+.. ++.. ....+.+-..|...+.++.|...+.+.. .|+ ..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------~~ 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------SA 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcc-hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------ch
Confidence 45677777777777777776655444332 1111 2234456677888889988888885432 222 23
Q ss_pred HHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 96 RFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..++..|.++.-.+++.+|...+..++...|..
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 456678888888899999999999998887764
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.08 E-value=0.062 Score=43.87 Aligned_cols=111 Identities=11% Similarity=0.036 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA 89 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~ 89 (231)
++.-.+..+|..+..+-..++.+.....+-..+... -.++ ...-....+-.+|++.|.++.|...+.+. ..|+.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~- 85 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID- 85 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-
Confidence 344456667777777777777777777666655421 1111 11223334456677777777777777543 24542
Q ss_pred CchhhHHHHhhHHHHHHH--------hhcHHHHHHHHHHHHHhCChh
Q psy9817 90 SNNEWARFHFYLGRIKAV--------RLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~--------~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.....-+|.+|.+++- ++++.+|...|..++...|.+
T Consensus 86 --~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 86 --PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp --TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred --chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 2334456777777777 777777777777777777753
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.07 E-value=0.041 Score=38.58 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+-..|+..+.++.|..++.... .|+ ....++..|.++.-.+++.+|...+..++...|..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPR------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCc------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 44566777777777777775431 121 23445667777777888888888888888777653
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.01 E-value=0.042 Score=41.75 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=55.4
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKL 140 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~ 140 (231)
+=++|++.+.++.|...+.+.. .| +-...++.+|.++.-.+++.+|..++..|+...|.+. . ++..
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~-----~~~~ 104 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQE------RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK-D-----LVLK 104 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-H-----HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH-H-----HHHH
Confidence 4567888888888888886542 23 2356677888888888888888888888888888652 1 2333
Q ss_pred HHHHHHhcCCCCCH
Q psy9817 141 AVVVELLLGDIPDR 154 (231)
Q Consensus 141 lI~v~LllG~iP~~ 154 (231)
+--+-+-+|+.+..
T Consensus 105 la~~~~~~~~~~~a 118 (150)
T 4ga2_A 105 IAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHCSSSSH
T ss_pred HHHHHHHcCChHHH
Confidence 34444566777764
No 75
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.99 E-value=0.042 Score=36.73 Aligned_cols=66 Identities=24% Similarity=0.222 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
......+-..|++.+.++.|...+.+.. .|+ ....++.+|.++.-.+++.+|..++..|+...|.+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3444556778899999999999886542 232 24667899999999999999999999999998875
No 76
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.95 E-value=0.0072 Score=41.73 Aligned_cols=102 Identities=8% Similarity=-0.018 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+|+..+..+...++.+.....+-.++.. ++.. ......+-..|++.+.++.|...+.+.. .|+ ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~ 75 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEE-SKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYN 75 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cch
Confidence 345566667776677777666555443321 1111 1233455677888889998888886542 232 113
Q ss_pred HHHHhhHHHHHHHh-hcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVR-LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~-~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.++.-. +++.+|.+++..++...|.+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 56678888888888 89999999999988887753
No 77
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.93 E-value=0.075 Score=44.87 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=14.4
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
.++.+|.++.-.+++.+|...++.|+...|
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344444444444555555555555444444
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.90 E-value=0.055 Score=41.94 Aligned_cols=103 Identities=11% Similarity=0.009 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhc-ccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 16 AAKCYFYHSRVHELT-NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~-~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
.+.+|+..+..+... +..+.....+-..+. ..+..........+-..|.+.+.++.|...+.+.. .|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----- 145 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ----- 145 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 355788888888888 888887766644443 11222233455667889999999999999986542 232
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC-hh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP-QT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p-~~ 128 (231)
....++.+|.++.-.+++.+|...++.++...| .+
T Consensus 146 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 181 (225)
T 2vq2_A 146 -FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred -CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 356788999999999999999999999999988 54
No 79
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.90 E-value=0.016 Score=41.03 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.|.++.|...+.+.. .|+ ....++.+|.++.-.+++.+|.+.+..|+..+|..
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELVETDPD------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 3345678899999999999986542 233 24478899999999999999999999999988764
No 80
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.077 Score=46.82 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHh---cCChhhHHhhhhccC--CCCCCCch
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH---YNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~---~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
.+|+..+.++...++.+.....+-..+.......+..........+-..|++ .|.++.|...+.+.. .|
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~------ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP------ 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc------
Confidence 3445555555555555544444433333221111111112233344455555 666666665554321 12
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+....++.+|.++.-.+++.+|.+.+..|+...|.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 12344556666666666666666666666666664
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.87 E-value=0.31 Score=41.28 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCC-----
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN----- 88 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~----- 88 (231)
.+.+|+..+.++...++.+.....+-.++.. ++.. ....+.+-..|.+.|.++.|...+.+.. .|+.
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLEL-----QPNN-LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHh
Confidence 3556777777777777766666555443332 1111 2234444556666666666666553210 0100
Q ss_pred -----------------------------------CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhH
Q psy9817 89 -----------------------------------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGF 133 (231)
Q Consensus 89 -----------------------------------~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~ 133 (231)
.+.......++.+|.++.-.+++.+|...+..|+...|.+. .
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~-- 248 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-S-- 248 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-H--
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-H--
Confidence 00001356677889999999999999999999998888642 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhhc-ccchHHHHHHH-HcCCHHHH
Q psy9817 134 RQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRRA-LSPYFQLTQAV-RMGELQKF 184 (231)
Q Consensus 134 ~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~~-L~~Y~~L~~AV-r~Gdl~~F 184 (231)
++..+.-+-.-+|+.... ..+.+ -.+.+. ...|..+..+. +.|+..+-
T Consensus 249 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 249 ---LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 222233333346765543 23332 111112 12355666554 45775443
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.87 E-value=0.059 Score=43.09 Aligned_cols=102 Identities=12% Similarity=-0.004 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+|+..+..+...+..+.....+-..+. .............+-..|++.|.++.|...+.+.. .|. .
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~ 174 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN------Q 174 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------C
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc------c
Confidence 45677777777777777777665544333 11222334455667789999999999999986542 232 2
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.++.-.+++.+|...+..++...|..
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 5667899999999999999999999999888864
No 83
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.78 E-value=0.08 Score=41.33 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
-.+..+|..+..+...++.+.....+-..+ ++ .....+.+-..|++.|.++.|...+.+.. .|
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~-------~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------ 68 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ-------DP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK------ 68 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS-------SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-------CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------
Confidence 345567888888888888877776553321 22 23455667788999999999999986542 23
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+....++..|.++.-.++|.+|.+.++.|+...|.+
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 235678899999999999999999999999988864
No 84
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.78 E-value=0.07 Score=42.96 Aligned_cols=103 Identities=14% Similarity=0.052 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
+-.+.+|+..+.++...++.+.....+-..+.. ++. .....+.+-.+|.+.|.++.|...+.+.. .|+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---- 109 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---- 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-----CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc----
Confidence 456788999999999999988887766554432 222 12334556778999999999999986542 233
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|...+..|+...|.+
T Consensus 110 --~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 110 --YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp --CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 24678889999999999999999999999998875
No 85
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.77 E-value=0.17 Score=41.53 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CC---CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FP---ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p---~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+.+-..|++.+.++.|...+.+.. .| +..........++.+|.++.-.+++.+|.+++..|+...|.+
T Consensus 195 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 195 VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 34445566666677766666663321 11 111113334566667777777777777777777777766653
No 86
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.056 Score=37.44 Aligned_cols=63 Identities=16% Similarity=-0.011 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.+.++.|...+.+.. .|+ ....++..|.++.-.++|.+|.+.++.|+...|.+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3445678899999999999886542 232 25678899999999999999999999999998875
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.69 E-value=0.058 Score=40.24 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+++..+..+...+..+.....+-..+.. ++.. ......+-..|+..+.++.|...+.+.. .|+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 108 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLAD-----APDN-VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------ 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------
Confidence 3678889999998888888888766554432 2221 2334556788999999999999986542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
.....+..|.++.-.+++.+|.+.+..|+...|... .++..+.-+-.-+|+....
T Consensus 109 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG------KVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCHHHH
Confidence 346778899999999999999999999999988642 1334444455556665543
No 88
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.68 E-value=0.031 Score=38.57 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=48.8
Q ss_pred HHHHHhcCChhhHHhhhhccC--CCCCCCchhhHH-HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKSA--FPENASNNEWAR-FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~-Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-..|++.+.++.|...+.+.. .|+ ... .++.+|.++.-.+++.+|.+++..|+...|.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV------GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 356788999999999886542 333 244 78899999999999999999999999999975
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.63 E-value=0.3 Score=39.65 Aligned_cols=109 Identities=13% Similarity=0.002 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhh--------cccHHHHHHHHHHHHHHHhhcCCcchhHHH-------------HHHHHHHHHhcCCh
Q psy9817 15 IAAKCYFYHSRVHEL--------TNNLDKVRSFLNARLRIATLRNDFEGQAVL-------------INCLLRNYLHYNLY 73 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~--------~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l-------------~N~Llr~Yf~~~~~ 73 (231)
..+.++|..+.++.. .++.+.....+-..+... -.++...... .-.+-..|++.|.+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 445678888888877 777777766554433321 0111111111 03446789999999
Q ss_pred hhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHh----------hcHHHHHHHHHHHHHhCChh
Q psy9817 74 DQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVR----------LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 74 ~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~----------~~y~~A~~~L~~A~~~~p~~ 128 (231)
+.|...+.+. .+|+ ......-+|.+|.++.-. +++.+|...+..++..-|.+
T Consensus 165 ~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPD---TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9999998654 3454 233567788999999876 99999999999999998875
No 90
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.63 E-value=0.032 Score=39.76 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+.+-..|++.|.++.|...+.+.. .| +....++.+|.++.-.+++.+|...+..|+...|..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 344556788999999999999986542 23 235677899999999999999999999999988764
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.63 E-value=0.19 Score=36.92 Aligned_cols=106 Identities=11% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC-Cchh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA-SNNE 93 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~-~~~~ 93 (231)
|..+.=.+..+-..++.+.....+-.++. -++... ...+.+=.+|++.+.++.|...+.+.. .|+.. ....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~-----~~p~~~-~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIE-----LDPSNI-TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 44455556666667777777766544443 233333 334455778999999999998876542 13322 2234
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+.=++-+|.++.-.++|.+|.+.++.|+...|.+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 56667789999999999999999999999887754
No 92
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.60 E-value=0.4 Score=38.43 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhh
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEW 94 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~ 94 (231)
..+.+|+..+.++...++.+.....+-.++... +.. ....+.+-.+|++.|.++.|...+.+..-- .+..
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~ 141 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-----TTR-LDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTD 141 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC-THHHHHHHHHHHHTTCHHHHHHHHGGGCCS----SCCC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-----ccc-HHHHHHHHHHHHHccCHHHHHHHHHHHhhc----CCCc
Confidence 346678888888888888877776665544421 111 134556677888999999999998765321 1233
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.....++++.+|.+.+..|+...|.+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 175 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5667788855556679999999999999998875
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.57 E-value=0.18 Score=41.38 Aligned_cols=59 Identities=25% Similarity=0.167 Sum_probs=27.3
Q ss_pred HHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+-..|.+.|.++.|...+.+.. .| +....++..|.++.-.+++.+|...++.|+...|.
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 3444555555555555543321 11 11233444555555555555555555555555443
No 94
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.56 E-value=0.065 Score=45.59 Aligned_cols=99 Identities=16% Similarity=-0.006 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHH
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWAR 96 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~ 96 (231)
++...+..+...+..+.....+-..+.. ..........+.+-..|.+.|.++.|...+.+.. .|+ ...
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 248 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE------DYS 248 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHH----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHh----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHH
Confidence 3444444444555555555444333322 1110112233444556666666666666664431 222 133
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.++.+|.++.-.+++.+|...+..|+...|.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4556666666666666666666666666665
No 95
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.55 E-value=0.16 Score=42.02 Aligned_cols=97 Identities=7% Similarity=-0.062 Sum_probs=65.7
Q ss_pred HHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhH
Q psy9817 24 SRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYL 101 (231)
Q Consensus 24 ~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~ 101 (231)
+..+...++.+.....+-..+... -.++.........+-..|++.|.++.|...+.+.. .| +....++..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~ 312 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP------DNVNALKDR 312 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc------ccHHHHHHH
Confidence 444555666666665554333221 11222222334456788999999999999986542 23 235678889
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
|.++.-.+++.+|.+++..|++..|.+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999988875
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.52 E-value=0.23 Score=39.00 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+|+..+..+...++.+.....+-..+... +.. ......+-..|++.+.++.|...+.+.. .|+
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------ 157 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN-GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN------ 157 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS-HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT------
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------
Confidence 45678888888888888888877665544422 111 2234556788999999999999986542 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
....++.+|.++.-.+++.+|...+..|+...|... . ++..+.-+-.-+|+....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHA-D-----AFYNAGVTYAYKENREKA 212 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCTTHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-H-----HHHHHHHHHHHccCHHHH
Confidence 345778999999999999999999999999988642 1 233333344456766553
No 97
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.50 E-value=0.15 Score=46.19 Aligned_cols=110 Identities=14% Similarity=0.028 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCC---------cchhHHHHHHHHHHHHhcCChhhHHhhhhcc
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRND---------FEGQAVLINCLLRNYLHYNLYDQADKLVKKS 83 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d---------~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~ 83 (231)
++-.|..|+-.+..+...++.+.....+-.++.......+ ......+.+.+-.+|++.+.++.|...+.+.
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3456777888888888888888888776665543311110 0111344556678999999999999988654
Q ss_pred C--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 84 A--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 84 ~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
. .| +.+..+|..|.+++-.++|.+|..+|+.|+...|.+
T Consensus 344 l~~~p------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 344 LGLDS------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HhcCC------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2 23 236778999999999999999999999999998875
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.44 E-value=0.065 Score=44.17 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc---chhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF---EGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN 91 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~---~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~ 91 (231)
+.+|+..+.++...++.+.....+-.++.......++ .......+.+-..|.+.|.++.|...+.+.. .|+
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---- 268 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---- 268 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc----
Confidence 5667788888888888887777666655544222222 2223455667888999999999999986542 232
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|.+++..|+...|.+
T Consensus 269 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 269 --NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp --CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred --chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 34567889999999999999999999999998875
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.40 E-value=0.43 Score=37.84 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCc----h----
Q psy9817 23 HSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN----N---- 92 (231)
Q Consensus 23 ~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~----~---- 92 (231)
.+.++...++.+.....+-..+. .++.... ....+-.+|+..|.++.|...+.+. .-|+.... +
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ-----KAPNNVD-CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 89999888888888766644333 2333222 2344567788999999999888654 22432100 0
Q ss_pred ---------------------hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh
Q psy9817 93 ---------------------EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA 129 (231)
Q Consensus 93 ---------------------~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~ 129 (231)
...--.|..|..+...++|.+|..+|+.|++.-|...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 0001246688899999999999999999999988753
No 100
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.32 E-value=0.15 Score=42.83 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHH
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWAR 96 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~ 96 (231)
|..++-.+..+...++.+.....+-.++.. ++.. ..+.+.+-..|++.|.++.|...+.+..-- .++...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~ 73 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLV-AVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVK 73 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHH
Confidence 456677777777788888777666444432 3322 234455678899999999999999765321 123457
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+|.+|.++.-.++|.+|...+..|+...|.+
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 78899999999999999999999999988864
No 101
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.31 E-value=0.86 Score=38.74 Aligned_cols=111 Identities=9% Similarity=0.003 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc--chhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCc
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF--EGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASN 91 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~--~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~ 91 (231)
.+.+++..+.++...+.++.....+-..+..+...+++ .......+.+-..|...|.++.|...+... ..|+.. .
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 170 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-P 170 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-G
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-c
Confidence 34557778888888888888888777776655433443 345555666788999999999999998643 123222 2
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+.+.-++.+|+++..++++.+|...+..|....+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 235667788999999999999999999999987554
No 102
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.28 E-value=0.17 Score=45.92 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhc---------ccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhc----CChhhHHhhhhcc
Q psy9817 17 AKCYFYHSRVHELT---------NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHY----NLYDQADKLVKKS 83 (231)
Q Consensus 17 ak~~~y~~~~~e~~---------~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~----~~~~~a~~l~~~~ 83 (231)
+.+|+..+.++... ++.+.....+-.++... -.+......+.+++...||.. +.++.|...+.+.
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 36778888888777 77777766554444321 122333333444445555555 4599998888654
Q ss_pred C--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 84 A--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 84 ~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
. .|. ..+....++.+|.++.-.++|.+|.+++..|+...|.+
T Consensus 248 l~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 248 EKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 221 12567889999999999999999999999999999875
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.17 E-value=0.054 Score=41.15 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+..+|..++++...+..+.....+-.+++ .++.. ....+.+-.+|.+.|.++.|...+.+.. .| .
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~-----~~p~~-~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~ 97 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN-----VQERD-PKAHRFLGLLYELEENTDKAVECYRRSVELNP------T 97 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC------C
Confidence 344577777777777777777766544332 23332 2334455677777788877777775542 23 2
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHH-HHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHK-NLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~-~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|-+ +++.|++..|.+
T Consensus 98 ~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 98 QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 34456677777777777766544 457777777765
No 104
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.13 E-value=0.17 Score=45.80 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCc-hh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASN-NE 93 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~-~~ 93 (231)
+.+|+..+..+...++.+.....+-...... ..+. ...+.+...|.+.|.++.|..++.+.. .|+.... ..
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDP----LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 4456666666666677666665553333211 1122 224556667777777777777764431 1111111 22
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+..++.+|.++.-.+++.+|.+.++.++...|.+
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35566667777777777777777777777766653
No 105
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.10 E-value=0.34 Score=40.69 Aligned_cols=164 Identities=14% Similarity=0.105 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCC-
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENAS- 90 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~- 90 (231)
+-.+.+|+..+.++...++.+.....+-.++... +. .....+.+-..|...|.++.|...+.+. ..|+...
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 168 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-----PD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 168 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 3456778888888888888887777665544322 21 2234555677888888888888887532 1232110
Q ss_pred ------------------------------------------chh--hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 91 ------------------------------------------NNE--WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 91 ------------------------------------------~~~--~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
.++ ....++.+|.++.-.+++.+|...++.|+...|
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 169 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 011 477888999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhhc-ccchHHHHHHH-HcCCHHHHHHHHH
Q psy9817 127 QTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRRA-LSPYFQLTQAV-RMGELQKFNEVLT 189 (231)
Q Consensus 127 ~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~~-L~~Y~~L~~AV-r~Gdl~~F~~~l~ 189 (231)
... . ++..+.-+-.-+|+.... ..+.+ -.+.+. ...|..+..+. +.|+..+=.+.++
T Consensus 249 ~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 249 NDY-L-----LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp TCH-H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCH-H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 742 1 223333344446776543 23332 111111 12366666655 5688655444443
No 106
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.08 E-value=0.18 Score=40.32 Aligned_cols=104 Identities=17% Similarity=0.041 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhhc-----------ccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhc
Q psy9817 14 LIAAKCYFYHSRVHELT-----------NNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~-----------~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~ 82 (231)
+=.+.+|+..+.++... ++.+.....+-.+++ .++... .....+-..|...|.++.|...+.+
T Consensus 70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~P~~~-~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER-----VNPRYA-PLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH-----hCcccH-HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 33456677888887777 777766655533332 222222 2334556789999999999998865
Q ss_pred cCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 83 SAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 83 ~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..--+ +....++.+|.++.-.+++.+|...++.|+...|.+
T Consensus 144 al~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 144 ALALE-----DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHC-----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 42100 235567899999999999999999999999998875
No 107
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.05 E-value=0.85 Score=36.47 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-CCCCCCchhhHH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-FPENASNNEWAR 96 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~p~~~~~~~~v~ 96 (231)
.+++-.+..+-..++.+.....+-..+. .++.... ....+-..|++.+.++.|...+.+.. .|+. ..-...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~ 75 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEA-----KKYNSPY-IYNRRAVCYYELAKYDLAQKDIETYFSKVNA--TKAKSA 75 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHH-----TTCCCST-THHHHHHHHHHTTCHHHHHHHHHHHHTTSCT--TTCCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhccCc--hhHHHH
Confidence 3455666667677787777766644443 2222221 23344568999999999999986542 3321 122355
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhh---cccchHHH
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRR---ALSPYFQL 172 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~---~L~~Y~~L 172 (231)
-++.+|.++.-.+++.+|.+++..|+...|... . ++..+--+-.-+|+.... ..+.+ .++. ....|..+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-----~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL-D-----MYGQIGSYFYNKGNFPLAIQYMEK-QIRPTTTDPKVFYEL 148 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-H-----HHHHHHHHHHHTTCHHHHHHHHGG-GCCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH-H-----HHHHHHHHHHHccCHHHHHHHHHH-HhhcCCCcHHHHHHH
Confidence 678999999999999999999999999988752 1 223333333446765432 22221 0000 01125667
Q ss_pred H-HHHHcCCHHH
Q psy9817 173 T-QAVRMGELQK 183 (231)
Q Consensus 173 ~-~AVr~Gdl~~ 183 (231)
. .+...|+..+
T Consensus 149 ~~~~~~~~~~~~ 160 (272)
T 3u4t_A 149 GQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHHTTCHHH
T ss_pred HHHHHHHHHHHH
Confidence 7 6667775443
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.01 E-value=1.1 Score=35.80 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+.+..|.+++-+++|.+|...++.++...|.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 3355566666666666666666666665554
No 109
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.01 E-value=0.15 Score=37.18 Aligned_cols=97 Identities=14% Similarity=-0.036 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHH
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARF 97 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y 97 (231)
+|-.+..+...++.+.....+-.+++ .++.... ....+-.+|.+.+.++.|...+.+.. -| +....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-----~~P~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-----KEPEREE-AWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHH
Confidence 55566666666777776655533332 2332222 23345677888999999988886542 23 23456
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.+|.++.-.+++.+|...+..|++..|..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 7889999999999999999999998877753
No 110
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.94 E-value=0.95 Score=35.99 Aligned_cols=148 Identities=18% Similarity=0.097 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+++-.+..+...++.+.....+-..+ ..+++... ....+-..|.+.|.++.|...+.+.. .| +.
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERAL-----KENPQDPE-ALYWLARTQLKLGLVNPALENGKTLVARTP------RY 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHH-----TTSSSCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------Cc
Confidence 4567778888877888877776553322 33443322 33445678889999999999986542 23 34
Q ss_pred HHHHhhHHHHHHHh-----------hcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHH
Q psy9817 95 ARFHFYLGRIKAVR-----------LEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVL 162 (231)
Q Consensus 95 v~Y~YY~Gri~~~~-----------~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~ 162 (231)
...++.+|.++..+ +++.+|...+..|+...|.+. . ++..+-.+-.-+|+.... ..+++ .+
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-~-----~~~~lg~~~~~~g~~~~A~~~~~~-al 145 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA-P-----LHLQRGLVYALLGERDKAEASLKQ-AL 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH-H-----HHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH-H-----HHHHHHHHHHHcCChHHHHHHHHH-HH
Confidence 56678899999999 999999999999999988752 1 112222233346776553 23332 11
Q ss_pred hhc--ccchHHHHHHH-HcCCHHH
Q psy9817 163 RRA--LSPYFQLTQAV-RMGELQK 183 (231)
Q Consensus 163 ~~~--L~~Y~~L~~AV-r~Gdl~~ 183 (231)
+-. ...+..+..+. ..|+..+
T Consensus 146 ~~~~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 146 ALEDTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHH
T ss_pred hcccchHHHHHHHHHHHHcCCHHH
Confidence 111 11255666655 4576533
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.91 E-value=0.97 Score=39.08 Aligned_cols=161 Identities=6% Similarity=-0.044 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhH
Q psy9817 18 KCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWA 95 (231)
Q Consensus 18 k~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v 95 (231)
.+++..+.++...++.+.....+-..+... + ......+.+-..|.+.|.++.|...+.+. ..|+. ....
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~ 248 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-----N-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCF 248 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHH
Confidence 345555555555555554444433322211 1 11233445566777777777777776543 12321 1111
Q ss_pred HHH---------hhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhH-HHHhh
Q psy9817 96 RFH---------FYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQ-AVLRR 164 (231)
Q Consensus 96 ~Y~---------YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~-~~~~~ 164 (231)
..+ .-.|..+.-.+++.+|...++.|+...|.+ ......++..+.-+-.-+|+.... ..+.+ -.+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSI--AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 111 122777777788888888888888777753 222223333333343445665543 22322 01111
Q ss_pred c-ccchHHHHHHH-HcCCHHHHHHHHH
Q psy9817 165 A-LSPYFQLTQAV-RMGELQKFNEVLT 189 (231)
Q Consensus 165 ~-L~~Y~~L~~AV-r~Gdl~~F~~~l~ 189 (231)
. ...|..+..+. ..||..+=.+.++
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 12255555555 4577554433333
No 112
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.64 E-value=0.21 Score=35.52 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=50.3
Q ss_pred HHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-..|++.|.++.|...+.+. ..|+ .......+|.+|.++.-.++|.+|...+..++...|.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN---GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 46788999999999998654 2343 23345678899999999999999999999999998864
No 113
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.64 E-value=0.41 Score=40.95 Aligned_cols=101 Identities=14% Similarity=-0.056 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+|+..+.++...++.+.....+-..+. .++... ...+.+-..|.+.|.++.|...+.+.. .|+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------ 303 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHFP-DAYCNLANALKEKGSVAEAEDCYNTALRLCPT------ 303 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TCSSCH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------
Confidence 466777788888777777777665543332 122111 223445667777788888777775431 232
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|...+..|+...|..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 23345567777777777777777777777766653
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.42 E-value=0.17 Score=37.24 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...|=..|++.|.++.|...+.+.. .| +-+..++.+|.++.-.++|.+|.+.++.|+...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 3455678999999999999987652 24 336788899999999999999999999999987764
No 115
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.34 E-value=0.21 Score=35.77 Aligned_cols=73 Identities=14% Similarity=0.030 Sum_probs=54.6
Q ss_pred HHHHHHhcCChhhHHhhhhccC--C-CCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhh-hhhHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSA--F-PENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTA-AVGFRQ 135 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~--~-p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~-~~~~~~ 135 (231)
|=+.+++.+.|+.|...+..+. . ++.........-++++|..+.-.|++.+|..++..|+...|.+. +..|+.
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3477889999999999985431 1 11112235567779999999999999999999999999999863 334444
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.33 E-value=0.11 Score=38.38 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+..=..|++.|.++.|...+.+.. .| +....++..|.++.-.+++.+|.+.++.|+..-|.+
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDP------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 334577999999999999987652 23 346788899999999999999999999999988875
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.33 E-value=0.21 Score=37.67 Aligned_cols=69 Identities=10% Similarity=-0.015 Sum_probs=55.0
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 54 EGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 54 ~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.........+-..|++.+.++.|...+.+.. .| +....++.+|.++.-.++|.+|..++..|+...|.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3444555666788999999999999986542 23 236788899999999999999999999999998874
No 118
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.28 E-value=0.25 Score=44.13 Aligned_cols=105 Identities=6% Similarity=-0.043 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCC-hhhHHhhhhccC--CCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNL-YDQADKLVKKSA--FPEN 88 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~-~~~a~~l~~~~~--~p~~ 88 (231)
+|+=.+.+|++.+.++...++.+.....+-.++. .++. .....+.+-.+|.+.|. ++.|-..+.+.. .|
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-----l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-- 163 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIE-----LNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-- 163 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-----HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH-----hCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--
Confidence 4445567788888888777776666655433332 2222 12233444566667775 777777765432 12
Q ss_pred CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 89 ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 89 ~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....-+++.|.++...++|.+|..++..|+..-|.+
T Consensus 164 ----~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 164 ----KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp ----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred ----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 223445556666666666666666666666655543
No 119
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.21 E-value=1.9 Score=35.32 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
|.++.-.+++.+|...+..++...|.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44455555555555555555554444
No 120
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.15 E-value=1.4 Score=39.78 Aligned_cols=100 Identities=12% Similarity=0.008 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~ 94 (231)
+.+|+..+..+...++.++....+-..... ++. .....+.+...|.+.|.++.|..++.+. ..|+ -
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~ 440 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTM-----DPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG------T 440 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT------C
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------c
Confidence 445666666666677776666555333321 111 1234556677888888888888887653 2232 2
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|..+.-.+++.+|.+.+..++...|.+
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3445668888888889999999998888887764
No 121
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.04 E-value=1.2 Score=39.04 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=81.1
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc-chhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhH
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF-EGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWA 95 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~-~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v 95 (231)
.+++.+.+++..++.++....+-..+ -.++ .+..-..-++..+|++.|.+++|.+.+.+.. .|+.....+.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i-----~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~ 176 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGI-----DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-----TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-----ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHH
Confidence 35788899998888888876663321 2222 2334445567899999999999999997542 22000012445
Q ss_pred HHHhhHHHHHHHhh--cHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 96 RFHFYLGRIKAVRL--EYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~--~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
....-.|-+.+.++ ++.+|+..|+.+..+.|... . ....+. +.+-+|++|..
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-~--~~lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-T--QLGLLN----LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-H--HHHHHH----HHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-c--HHHHHH----HHHHcCCHHHH
Confidence 55555688888888 89999999999888877411 1 111111 67778888876
No 122
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.02 E-value=1.6 Score=38.59 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+|+..+..+...+..+.....+-..+.. ++. ......+-..|++.+.++.|...+.+.. .|+ .
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~ 309 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL-----HPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE------Y 309 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT------C
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-----CCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC------C
Confidence 567888888888888888887766554432 333 3344556788999999999999986542 232 3
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHH-HHhhc-ccchHH
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQA-VLRRA-LSPYFQ 171 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~-~~~~~-L~~Y~~ 171 (231)
...++..|.++...++|.+|.+.+..|+...|... . ++..+.-+-.-+|+.... ..+.+- ...+. ...+..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 383 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-Y-----PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-H-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-H-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 45688899999999999999999999999988752 1 222233334446776543 233320 11111 112455
Q ss_pred HHHHH-HcCCHHHHHHHHH
Q psy9817 172 LTQAV-RMGELQKFNEVLT 189 (231)
Q Consensus 172 L~~AV-r~Gdl~~F~~~l~ 189 (231)
+..+. +.|+..+-.+.++
T Consensus 384 l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 55544 5688655444433
No 123
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.01 E-value=0.39 Score=46.75 Aligned_cols=99 Identities=13% Similarity=0.044 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
|.+|+-.+.++...+++++....+-.++. .+++-. ...+.|=..|.+.|.++.|...+.+.. -| +.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~-----l~P~~~-~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------~~ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFA-AAHSNLASVLQQQGKLQEALMHYKEAIRISP------TF 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Confidence 44556666666666666655544433222 122111 122333455566666666666554331 12 22
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+..++.+|.++.-++++.+|.+++++|++..|.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~ 109 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344555566666666666666666666665554
No 124
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.01 E-value=0.19 Score=44.75 Aligned_cols=106 Identities=12% Similarity=-0.033 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+.+|+..+.++...++.+.....+-..+.. ++.. ....+.+-..|.+.|.++.|...+.+.. .|+.......
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLK-----FPTL-PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 456777777777777777777665444432 1111 1233445677777888888877774421 1222222233
Q ss_pred HHHHhhHHHHHHHh----------hcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVR----------LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~----------~~y~~A~~~L~~A~~~~p~~ 128 (231)
+...+..|.++.-. +++.+|...+..|+...|.+
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 34446667777776 77777777777777776653
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.98 E-value=0.33 Score=42.09 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+-.+..|+..+..+...++.+.....+-..+.. ++.. ....+.+-..|++.+.++.|...+.+.. .|
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---- 91 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG-----DPDN-YIAYYRRATVFLAMGKSKAALPDLTKVIQLKM---- 91 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----
Confidence 4556778888888888888888887766444432 2222 4455667889999999999999986542 23
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+....++.+|.++.-.+++.+|...+..|+...|.+
T Consensus 92 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 92 --DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 236778889999999999999999999999988864
No 126
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.96 E-value=0.29 Score=34.12 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
....+-..|+..+.++.|...+.+.. .|+ ....++.+|.++.-.++|.+|...+..|+...|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 34556678899999999999986542 232 2567788999999999999999999999988775
No 127
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.86 E-value=0.45 Score=46.28 Aligned_cols=126 Identities=13% Similarity=-0.042 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCch
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNN 92 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~ 92 (231)
|+=.+.+|+-.+.++...++.++....+-.+++ -+++- ....+.+=..|.+.|.++.|...+.+..- -++
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-----l~P~~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~----l~P 108 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-----ISPTF-ADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INP 108 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCC
Confidence 344577899999999999999888866644443 22222 23345567788999999999999876521 012
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR 154 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~ 154 (231)
+...-++.+|.++.-++++.+|.+++++|++..|.+. . ++.-+.-+-..+|+....
T Consensus 109 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~-~-----a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP-D-----AYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-H-----HHHHHHHHHHHTTCCTTH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-H-----HHhhhhhHHHhcccHHHH
Confidence 3466788999999999999999999999999999752 1 122233333446777664
No 128
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=93.86 E-value=0.35 Score=41.40 Aligned_cols=64 Identities=19% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+.+.+-..|.+.|.++.|...+.+. ..|+ ...-++.+|.++.-.+++.+|.+.+..|+..+|.+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 3455677888888888888887654 2232 23346778888899999999999999999888865
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.83 E-value=0.11 Score=40.11 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+=..|++.|.++.|...+.+..-- .+.-..+++.+|.++.-.++|.+|.+++..|+...|.+
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 34457789999999999999765210 12346788999999999999999999999999999975
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=93.71 E-value=0.17 Score=36.92 Aligned_cols=59 Identities=19% Similarity=0.029 Sum_probs=49.3
Q ss_pred HHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 64 LRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-..+++.|.++.|...+.+.. .| +....+|.+|.++.-.+++.+|...+..|+...|.+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEP------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 466789999999999986542 23 346678899999999999999999999999998875
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.62 E-value=0.29 Score=35.09 Aligned_cols=64 Identities=13% Similarity=-0.060 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....+-..|++.+.++.|...+.+.. .|+ ....++.+|.++.-.++|.+|...+..|+...|.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 34455678899999999999986542 232 35688999999999999999999999999988874
No 132
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.59 E-value=1 Score=35.85 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=57.0
Q ss_pred cchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 53 FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 53 ~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+.........+-..|+..|.++.|...+.+.. .|+ ....++.+|.++.-.++|.+|..++..|+...|.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc
Confidence 34455666777899999999999999986542 232 35567889999999999999999999999998875
No 133
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.59 E-value=2.4 Score=37.01 Aligned_cols=103 Identities=11% Similarity=-0.039 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
++-.+.+|+..+..+...+..+.....+-..+. .++. ......+-..|.+.|.++.|...+.+.. .|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--- 302 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-----LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--- 302 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-----HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT---
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC---
Confidence 466678899999999999988888776644443 2333 4556667889999999999999986542 232
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++..|.++.-.+++.+|...+..|+...|.+
T Consensus 303 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 303 ---NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337 (514)
T ss_dssp ---CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh
Confidence 23457889999999999999999999999988874
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=93.55 E-value=0.16 Score=37.66 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+-..|++.|.++.|...+.+.. .| +...+++.+|.++.-.++|.+|..++..|+...|.+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDH------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 34678889999999999986542 23 346778899999999999999999999999998875
No 135
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.51 E-value=1.3 Score=34.98 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+.+-..|++.|.++.|...+.+.. .| +-+..++-+|.++.-.+++.+|..++..|+..-|.+
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 347789999999999999986542 23 336778899999999999999999999999999975
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.47 E-value=0.2 Score=34.29 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|+..+.++.|...+.+.. .|+ -...++..|.++.-.++|.+|...+..|+...|.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 4455678889999999999986542 332 25678899999999999999999999999988864
No 137
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.37 E-value=0.68 Score=41.94 Aligned_cols=102 Identities=10% Similarity=0.020 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhh
Q psy9817 16 AAKCYFYHSRVHELTNNL-DKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEW 94 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l-~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~ 94 (231)
.+.+|+..++.+...++. +.....+-.+++. ++. .....+.+-..|++.|.++.|...+.+..-- .+ +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p--~- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CK--N- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CC--C-
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC--C-
Confidence 567899999999999888 8887766554432 222 1234556678899999999999999765211 11 2
Q ss_pred HHHHhhHHHHHHHh---------hcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVR---------LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~---------~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.++.-. ++|.+|.+.+..|+...|.+
T Consensus 170 ~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 170 KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 47889999999999 99999999999999999975
No 138
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.36 E-value=0.47 Score=43.54 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCC
Q psy9817 13 DLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENAS 90 (231)
Q Consensus 13 d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~ 90 (231)
|+-.+.+|+..+..+...++.++....+-.++. .++.. ....+.+-..|.+.|.++.|...+.+.. .|+
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--- 89 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-----LHPGH-PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--- 89 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-----TSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---
Confidence 344467788888888888888877765544332 23322 2334556778899999999998886542 232
Q ss_pred chhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++.-.+++.+|.+.++.|+...|.+
T Consensus 90 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 90 ---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 35677889999999999999999999999988864
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.26 E-value=0.11 Score=35.41 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+-..|++.+.++.|...+.+.. .|+ ....++..|.++.-.++|.+|.++++.|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 34567889999999999986542 232 2456788999999999999999999999998886
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.24 E-value=0.21 Score=34.52 Aligned_cols=66 Identities=24% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
......+-..|++.+.++.|...+.+.. .|+ .....+.+|.++.-.+++.+|...+..++...|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3445566788999999999999986542 232 24567888999999999999999999999988764
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=93.24 E-value=0.32 Score=36.69 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.|.++.|...+.+.. -| .-..+++.+|.++.-.++|.+|...+..|+...|.+
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDH------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCc------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 3345678899999999999986542 23 336677899999999999999999999999998875
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.46 Score=33.87 Aligned_cols=62 Identities=19% Similarity=0.101 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 61 NCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 61 N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..+=..|++.+.++.|...+.+.. .|+ ....++..|.++.-.++|.+|...+..|+...|.+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 344567899999999999986542 232 35788999999999999999999999999998875
No 143
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.07 E-value=0.16 Score=46.51 Aligned_cols=91 Identities=9% Similarity=0.090 Sum_probs=65.5
Q ss_pred HHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHH
Q psy9817 26 VHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGR 103 (231)
Q Consensus 26 ~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gr 103 (231)
.+...++.++....+-.++.. ++.. ....+.+-..|++.+.++.|...+.+.. .| +....++.+|.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p------~~~~~~~~lg~ 82 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-----NPSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDK------KYIKGYYRRAA 82 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-----CCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHH
Confidence 333445556666555444332 2222 3445566788999999999999986542 23 33667889999
Q ss_pred HHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 104 IKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 104 i~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.-+++|.+|.+.++.|+...|.+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999998875
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.84 E-value=0.26 Score=34.31 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 57 AVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 57 ~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
......+-..|+..+.++.|...+.+.. .|+ ....++..|.++...+++.+|.+.+..|+...|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 3344556788899999999999986542 232 25678899999999999999999999999988864
No 145
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.64 E-value=0.76 Score=37.49 Aligned_cols=100 Identities=14% Similarity=-0.066 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~ 94 (231)
+..|+..+..+...++.+.....+-..+. .++.. ......+-..|++.+.++.|...+.+.. .|+ .
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~ 88 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQ-----AAPER-EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------D 88 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC------C
Confidence 34467777777777788777765544333 22222 2333456788999999999999986542 232 3
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.++.-.+++.+|...+..++...|..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 5677889999999999999999999999987764
No 146
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.44 E-value=4.2 Score=33.89 Aligned_cols=164 Identities=17% Similarity=0.126 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-C-CCCCCc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-F-PENASN 91 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~-p~~~~~ 91 (231)
+=.+.+|+-++...+..+..+.++..+-.+++ .++.....+.+.+...+.+.+.++.|..++.+.. . |.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---- 166 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---- 166 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----
Confidence 33466899999999999998888876644443 2332222244555677788999999999996642 2 32
Q ss_pred hhhHHHHhhHHHHHHH---hhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhh-cc
Q psy9817 92 NEWARFHFYLGRIKAV---RLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRR-AL 166 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~---~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~-~L 166 (231)
. +..|.|...+- .+++.+|...++.|+...|.+. . +..-++-...-+|+.... .+|.+ .+.. .+
T Consensus 167 ~----~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~--~----~~~~~~~~~~~~g~~~~A~~~~~~-al~~~~l 235 (308)
T 2ond_A 167 R----HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP--E----YVLAYIDYLSHLNEDNNTRVLFER-VLTSGSL 235 (308)
T ss_dssp C----THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH--H----HHHHHHHHHHTTCCHHHHHHHHHH-HHHSSSS
T ss_pred C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--H----HHHHHHHHHHHCCCHHHHHHHHHH-HHhccCC
Confidence 1 22344655553 6999999999999999988642 1 222223333446776543 34443 2221 12
Q ss_pred cc------hHHHHHHH-HcCCHHHHHHHHHHcchhhhh
Q psy9817 167 SP------YFQLTQAV-RMGELQKFNEVLTTYGNQFRT 197 (231)
Q Consensus 167 ~~------Y~~L~~AV-r~Gdl~~F~~~l~~~~~~f~~ 197 (231)
.| +..++... +.||.....++.++....+-.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 21 33333333 469988877777665555544
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.40 E-value=0.79 Score=32.04 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.+.++.|...+.+.. .|+ -...++..|.++.-.+++.+|...+..|+...|.+
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPK------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTT------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4455678899999999999986542 232 26678899999999999999999999999988764
No 148
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.29 E-value=1.1 Score=40.83 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=66.8
Q ss_pred ccHHHHHHHHHHHHHHH--hhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc------CCCCCCCchhhHHHHhhHH
Q psy9817 31 NNLDKVRSFLNARLRIA--TLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFYLG 102 (231)
Q Consensus 31 ~~l~~i~~~l~~~~r~~--~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~------~~p~~~~~~~~v~Y~YY~G 102 (231)
+..++..+.+-.++... .+-.+....+...|.|-..|...|.|+.|..+..++ .+++. -++.+.-+.-+|
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--Hp~~a~~l~nLa 389 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY--SLNVASMWLKLG 389 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHH
Confidence 34455555554444433 223334456677888899999999999999998543 23331 268888899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHH
Q psy9817 103 RIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 103 ri~~~~~~y~~A~~~L~~A~~ 123 (231)
.+|.-+|+|.+|...+++|+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999997
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.16 E-value=1.7 Score=31.01 Aligned_cols=70 Identities=11% Similarity=0.014 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 56 QAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 56 ~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.......+-..|++.+.++.|...+.+.. .|+ .......++.+|.++.-.++|.+|...+..|+...|.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 34455667789999999999999997642 232 23457888999999999999999999999999988764
No 150
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=92.11 E-value=0.6 Score=41.58 Aligned_cols=103 Identities=5% Similarity=-0.060 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhh
Q psy9817 16 AAKCYFYHSRVHELTNN-LDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEW 94 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~-l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~ 94 (231)
.+.+|++.+.++...++ .+.....+-.++. .++.. ....+.+-.+|.+.+.++.|...+.+..-- .+.-
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-----l~P~~-~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~ 199 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-----EQPKN-YQVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKN 199 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----HCTTC-HHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTC
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-----HCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccC
Confidence 45679999999988886 8777755533332 23322 223444566788889999999998765310 1233
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..-+++.|.++.-.++|.+|.++++.|++.-|.+
T Consensus 200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 4567899999999999999999999999999975
No 151
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.03 E-value=0.31 Score=42.21 Aligned_cols=107 Identities=13% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC---C--c--c-hh---HHHHHHHHHHHHhcCChhhHHhhhhccC
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN---D--F--E-GQ---AVLINCLLRNYLHYNLYDQADKLVKKSA 84 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~---d--~--~-~~---~~l~N~Llr~Yf~~~~~~~a~~l~~~~~ 84 (231)
.|..|+..+..+...++.......+-.+++...... . . + .. ..+.+.+-.+|++.+.++.|...+.+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566688888888777887777766655443210000 0 0 0 00 0144556788999999999998886542
Q ss_pred --CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 85 --FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 85 --~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.| +.+..+|..|.++.-.++|.+|..+|..|+...|.+
T Consensus 258 ~~~p------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 258 TEEE------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHCT------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 23 336678999999999999999999999999888865
No 152
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.02 E-value=0.71 Score=42.35 Aligned_cols=102 Identities=10% Similarity=-0.048 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCch
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNN 92 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~ 92 (231)
-.+.+|+..+.++...++.++....+-.++.. ++.. ....+.+-..|.+.|.++.|...+.+.. .|+
T Consensus 55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 123 (568)
T 2vsy_A 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-----APEH-PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE----- 123 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 34677888999999999988888766554432 2222 2344566788999999999999986542 232
Q ss_pred hhHHHHhhHHHHHHHh---hcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVR---LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~---~~y~~A~~~L~~A~~~~p~~ 128 (231)
....++.+|.++... +++.+|.+.+..|++..|..
T Consensus 124 -~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 124 -EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp -CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred -CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 245678899999999 99999999999999998863
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=91.25 E-value=2.5 Score=32.55 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchh----------hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE----------WARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~----------~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
....+-..|++.+.++.|...+.+. ..|+...... .+..++.+|.++.-.++|.+|..++..|+...|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445668899999999999998654 2343221111 247888999999999999999999999999988
Q ss_pred hh
Q psy9817 127 QT 128 (231)
Q Consensus 127 ~~ 128 (231)
.+
T Consensus 120 ~~ 121 (198)
T 2fbn_A 120 NN 121 (198)
T ss_dssp TC
T ss_pred cc
Confidence 65
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.17 E-value=3.2 Score=30.05 Aligned_cols=100 Identities=9% Similarity=-0.081 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
.+.+|+..+.++...++.+.....+-.++.. ++.. ......+-..|++.|.++.|...+.+.. .|+ ..
T Consensus 46 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~----~~ 115 (166)
T 1a17_A 46 NAIYYGNRSLAYLRTECYGYALGDATRAIEL-----DKKY-IKGYYRRAASNMALGKFRAALRDYETVVKVKPH----DK 115 (166)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----CH
Confidence 4677888999998888888887766555543 2221 2234455678999999999999986542 343 33
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
.+...+-.|..+.-.+++.+|.+.+..+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 44455556666888899999999988876543
No 155
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.80 E-value=3.7 Score=32.45 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~ 94 (231)
+..+|-.+..+-..+..+.....+-..+... -.++... -....+-..|++.+.++.|...+.+. ..|+.. ..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~-~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~---~~ 77 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQ-QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NI 77 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---TH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---cH
Confidence 4456667777777777777776664444311 0112222 23344568899999999999998654 345522 22
Q ss_pred HHHHhhHHHHHHH------------------hhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAV------------------RLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~------------------~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..=+|+.|.++.- ++++.+|...+..++..-|.+
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~ 129 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS 129 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC
Confidence 2336788988875 579999999999999998875
No 156
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.53 E-value=0.66 Score=36.63 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=34.1
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+...++||+|..++-.++|++|..++..+++.-|.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 678999999999999999999999999999999975
No 157
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=89.97 E-value=2.6 Score=34.01 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHh----cCChhhHHhhhhccCCCCCCCch
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPENASNN 92 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~----~~~~~~a~~l~~~~~~p~~~~~~ 92 (231)
+.+++..+..+...+..+.....+-.+.. .++. .....+-.+|.. .+.++.|...+.+..-.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------ 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------ 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------
Confidence 44556666666655555555544433222 1222 112233445555 66666666555433110
Q ss_pred hhHHHHhhHHHHHHH----hhcHHHHHHHHHHHHHh
Q psy9817 93 EWARFHFYLGRIKAV----RLEYSTAHKNLVQALRK 124 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~ 124 (231)
....-.+.+|.++.- .+++.+|.++++.|+..
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc
Confidence 123344455555555 55555555555555543
No 158
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=89.78 E-value=2.9 Score=38.63 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHHHHHHh--hcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc------CCCCCCCchhhHHHHhhH
Q psy9817 30 TNNLDKVRSFLNARLRIAT--LRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFYL 101 (231)
Q Consensus 30 ~~~l~~i~~~l~~~~r~~~--lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~------~~p~~~~~~~~v~Y~YY~ 101 (231)
.++.++..+.+-.++.... +-.+....+...|.|-..|...|.++.|..+..++ .+++. -++.+.-+.-+
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--Hp~~a~~l~nL 399 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN--NAQLGMAVMRA 399 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 3455555555544444332 22333456677888999999999999999987543 33332 25788899999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHH
Q psy9817 102 GRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 102 Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
|.+|.-+|+|.+|...+++|+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999997
No 159
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=89.78 E-value=0.2 Score=44.05 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCc-chhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCC----
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDF-EGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENA---- 89 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~-~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~---- 89 (231)
+.+|+..+.++...++.+.....+-.++. ...++ ..+....+.-.-.+.+.+.++.|...+.++ ..|+..
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 34467778888888887777665533332 11222 222222222112345778888887766443 223321
Q ss_pred --------------CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 90 --------------SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 90 --------------~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++..+..++.+|.++..+|++.+|.+++++|++..|..
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 012335678889999999999999999999999877753
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.73 E-value=0.69 Score=32.82 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=41.6
Q ss_pred cCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 70 YNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 70 ~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.|.++.|...+.+..-- ....++....++-+|.++.-.++|.+|..++..|+...|.+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 45667777776543210 00135678889999999999999999999999999998875
No 161
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.61 E-value=0.42 Score=45.60 Aligned_cols=63 Identities=14% Similarity=-0.086 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhc
Q psy9817 14 LIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKK 82 (231)
Q Consensus 14 ~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~ 82 (231)
+=.+.+|+..+.++...++.+.....+-.++.. +++. ....+.+=..|++.+.++.|...+.+
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 492 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAER-----VGWR-WRLVWYRAVAELLTGDYDSATKHFTE 492 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HCCC-HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----Ccch-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455666666666666666665554433321 1111 11223334455666666666665543
No 162
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.29 E-value=2.8 Score=39.91 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk 139 (231)
...+-..|++.|.++.|...+.+..- ..++-...+|+.|.++...++|.+|.++|+.|++..|.+. . ++.
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-~-----~~~ 505 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAE----RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL-A-----PKL 505 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS-H-----HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc----cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-H-----HHH
Confidence 34456789999999999999865421 0123367889999999999999999999999999999752 1 112
Q ss_pred HHHHHHHhcCCCCCHHHhhHHHHh--hcc-cchHHHHHHH-HcCCHHH
Q psy9817 140 LAVVVELLLGDIPDRQIFRQAVLR--RAL-SPYFQLTQAV-RMGELQK 183 (231)
Q Consensus 140 ~lI~v~LllG~iP~~~ll~~~~~~--~~L-~~Y~~L~~AV-r~Gdl~~ 183 (231)
.+-.+-.-+|+......+++ .++ ... ..|..+..+. +.|+..+
T Consensus 506 ~lg~~~~~~g~~~~~~~~~~-al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 506 ALAATAELAGNTDEHKFYQT-VWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHHHHHHHHTCCCTTCHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCChHHHHHHHH-HHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 22223344677766222332 111 111 1255666554 4466543
No 163
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.27 E-value=9.2 Score=34.37 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc-CCCCCCCchhh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS-AFPENASNNEW 94 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~-~~p~~~~~~~~ 94 (231)
.+.+|+-++...+..++.+.++..+-..+. .++.....+-+...+.+.+.+.++.|..++.+. ..|+. .
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~----~- 389 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLA-----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART----R- 389 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC----C-
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-----ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC----c-
Confidence 467899999999999999988876644433 222222234445566677889999999999654 22321 1
Q ss_pred HHHHhhHHHHH---HHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCH-HHhhHHHHhh-cccc-
Q psy9817 95 ARFHFYLGRIK---AVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDR-QIFRQAVLRR-ALSP- 168 (231)
Q Consensus 95 v~Y~YY~Gri~---~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~-~ll~~~~~~~-~L~~- 168 (231)
+.-|.+... ...+++.+|...++.|+..+|.+. . +..-++-+..-+|+.... .+|.+ .+.. .+.|
T Consensus 390 --~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~--~----~~~~~~~~~~~~g~~~~Ar~~~~~-al~~~~~~~~ 460 (530)
T 2ooe_A 390 --HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP--E----YVLAYIDYLSHLNEDNNTRVLFER-VLTSGSLPPE 460 (530)
T ss_dssp --THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH--H----HHHHHHHHHTTTTCHHHHHHHHHH-HHHSCCSCGG
T ss_pred --hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH--H----HHHHHHHHHHhCCCHhhHHHHHHH-HHhccCCCHH
Confidence 222333332 258999999999999999998642 1 122222233345765433 34443 2221 1111
Q ss_pred -----hHHHHH-HHHcCCHHHHHHHHHHcchhhh
Q psy9817 169 -----YFQLTQ-AVRMGELQKFNEVLTTYGNQFR 196 (231)
Q Consensus 169 -----Y~~L~~-AVr~Gdl~~F~~~l~~~~~~f~ 196 (231)
+...++ ..+.||.....++.++..+.|-
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 222222 2346998888877766555444
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=88.90 E-value=1.8 Score=32.22 Aligned_cols=71 Identities=7% Similarity=0.006 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhccC----------CCCCC----CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKSA----------FPENA----SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~~----------~p~~~----~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
......=..|++.+.++.|...+.+.. -|... ..+..+..++-+|.+++-.++|.+|..+++.|+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 334455678889999999988875431 12110 0345678889999999999999999999999999
Q ss_pred hCChh
Q psy9817 124 KAPQT 128 (231)
Q Consensus 124 ~~p~~ 128 (231)
..|.+
T Consensus 92 ~~p~~ 96 (162)
T 3rkv_A 92 REETN 96 (162)
T ss_dssp HSTTC
T ss_pred cCCcc
Confidence 98875
No 165
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.75 E-value=4.4 Score=35.21 Aligned_cols=111 Identities=16% Similarity=0.097 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC-C--cchhHHHHHHHHHHHHhcCChhhHHhhhhccC-----CCCC
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRN-D--FEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-----FPEN 88 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~-d--~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-----~p~~ 88 (231)
|.+|--.+.++...|+.++....+-.++......+ + .....+..+.+-..|.+.|.++.|...+.+.. ++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 44566678888888888888877766655432221 1 22344555667889999999999988875431 1111
Q ss_pred CCchhhHHHHhhHHHH--HHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 89 ASNNEWARFHFYLGRI--KAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 89 ~~~~~~v~Y~YY~Gri--~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+...-+...|.. ++..++|.+|.++++.|+...|.+
T Consensus 131 -~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~ 171 (472)
T 4g1t_A 131 -YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171 (472)
T ss_dssp -SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred -cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence 112233344445543 344678999999999999999875
No 166
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=88.25 E-value=2.8 Score=28.30 Aligned_cols=97 Identities=5% Similarity=-0.065 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~ 93 (231)
.+..|+-.+..+...++.+.....+-.+++. ++.. ......+-.+|++.|.++.|...+.+. ..|+......
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-----QPQN-PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 3567888888888888888877766554442 2222 233455678899999999999998654 3355333333
Q ss_pred hHHHHhhHHHHHHHhhcHHHHHHHH
Q psy9817 94 WARFHFYLGRIKAVRLEYSTAHKNL 118 (231)
Q Consensus 94 ~v~Y~YY~Gri~~~~~~y~~A~~~L 118 (231)
...-++..|.++.-.+++.+|.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 5677888899988888777665443
No 167
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=87.61 E-value=1.2 Score=30.85 Aligned_cols=36 Identities=14% Similarity=0.016 Sum_probs=32.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-...+|.+|.++.-.++|.+|..+|+.|++..|..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 345678999999999999999999999999999875
No 168
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.53 E-value=1.4 Score=39.95 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHHHhcCChhhHHhhhhcc------CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 54 EGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 54 ~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~------~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
...+.+.|.|...|...|.++.|..+..++ .+|+. -++.+.-++-+|.+|.-+|+|.+|...+.+|+.
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345666888899999999999999987543 34432 257888899999999999999999999999997
No 169
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=86.95 E-value=4.5 Score=33.83 Aligned_cols=60 Identities=12% Similarity=-0.035 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|.+.|.++.|...+.+ |+ ...-++-.|.++.-.+++.+|...|..+....|.+
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ---GD------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT---CC------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC---CC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 33445677788888888888776 31 23455667888888888888888888888777653
No 170
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.55 E-value=9.8 Score=30.44 Aligned_cols=97 Identities=18% Similarity=0.026 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHh----cCChhhHHhhhhccCCCCC
Q psy9817 17 AKCYFYHSRVHEL----TNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPEN 88 (231)
Q Consensus 17 ak~~~y~~~~~e~----~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~----~~~~~~a~~l~~~~~~p~~ 88 (231)
+.+++..+..+.. .+..+.....+-.+. ..++. ...+.+-..|.. .+.++.|...+.+..-.
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~----~~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 107 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC----DLNYS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-- 107 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----HTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH----HCCCH----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--
Confidence 4567888888877 777776665553332 22322 333445667778 89999999888655321
Q ss_pred CCchhhHHHHhhHHHHHHH----hhcHHHHHHHHHHHHHhCCh
Q psy9817 89 ASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 89 ~~~~~~v~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~~p~ 127 (231)
....-.+.+|.++.- .+++.+|.+++..|+..-+.
T Consensus 108 ----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 146 (273)
T 1ouv_A 108 ----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDG 146 (273)
T ss_dssp ----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred ----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcH
Confidence 134567788888888 89999999999999976543
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=84.74 E-value=5.8 Score=31.21 Aligned_cols=109 Identities=9% Similarity=0.015 Sum_probs=69.9
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcC-----Ccc-hhHHHHHHHHHHHHhcCChhhHHhhhhccCCC--C-CCC
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRN-----DFE-GQAVLINCLLRNYLHYNLYDQADKLVKKSAFP--E-NAS 90 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~-----d~~-~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p--~-~~~ 90 (231)
++-.+...-..++.+......-.+++...... +.. ..+...+.+=..+.+++.++.|-...++..-- . ..-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 44444455556677777766655555442210 111 01224445567788999999998887654200 0 000
Q ss_pred chhhHHHH----hhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 91 NNEWARFH----FYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 91 ~~~~v~Y~----YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++...-+ |-.|..+.-.++|.+|..++..|+...|..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 12455666 999999999999999999999999998875
No 172
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.97 E-value=1.7 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=32.4
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.....++.+|.++.-.++|.+|..++..|+...|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456788899999999999999999999999998864
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.80 E-value=2.4 Score=35.28 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...+-..|++.|.++.|...+.+.. .| +...+++..|.++.-.++|.+|...+..|+...|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3445577899999999999986542 23 236788999999999999999999999999988864
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.99 E-value=9.6 Score=32.49 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~ 89 (231)
++.+.+.+|+..+.++...++.+.....+-.++.. ++... .....+-..|++.+.++.|...+.+.. .|+
T Consensus 191 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-- 262 (336)
T 1p5q_A 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNE-KGLSRRGEAHLAVNDFELARADFQKVLQLYPN-- 262 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--
Confidence 45666889999999999999988888766554432 33222 233455788999999999999987652 243
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHH-HHHHHHHhC
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHK-NLVQALRKA 125 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~-~L~~A~~~~ 125 (231)
....++.+|.++.-.+++.+|.. .+...|.+.
T Consensus 263 ----~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 263 ----NKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23567889999999999999954 566666543
No 175
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.78 E-value=3.7 Score=31.25 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=34.6
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.+.-.|+||+|.-+.=.++|++|..++...++.-|.+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3788999999999999999999999999999999965
No 176
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.93 E-value=2.4 Score=36.40 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCHHH-h-----------hHHHHhhcccchHHHHHHHHcCCHHHHHHHHHHcchhhhhc
Q psy9817 131 VGFRQTTQKLAVVVELLLGDIPDRQI-F-----------RQAVLRRALSPYFQLTQAVRMGELQKFNEVLTTYGNQFRTD 198 (231)
Q Consensus 131 ~~~~~~ilk~lI~v~LllG~iP~~~l-l-----------~~~~~~~~L~~Y~~L~~AVr~Gdl~~F~~~l~~~~~~f~~d 198 (231)
++++-+++-|-+.--|..|++++... + ..|.++.. ..+-+|+..||..+|=+.+.+...- .
T Consensus 99 s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~a----l~le~al~eGnY~kff~l~~~~~~p---~ 171 (274)
T 4b4t_T 99 SDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYP----IKLDRWLMEGSYQKAWDLLQSGSQN---I 171 (274)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHH----HHHHHHHHHTCSHHHHHHHHTCTTC---C
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHH----HHHHHHHHcCCHHHHHHHHhcCCCC---c
Confidence 45666776666666566677766532 1 12222222 3688899999999988777653210 1
Q ss_pred chH-HHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy9817 199 YTF-KLILRLRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 199 g~y-~Lv~rlr~~v~R~liRki~l~YsrIsl~d 230 (231)
..| .+++.+-.-+-....+.+..+|.+||+++
T Consensus 172 ~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~ 204 (274)
T 4b4t_T 172 SEFDSFTDILKSAIRDEIAKNTELSYDFLPLSN 204 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 123 25555555555667788999999999865
No 177
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=80.76 E-value=3.8 Score=30.66 Aligned_cols=64 Identities=16% Similarity=0.031 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHH-HHHhhcH--HHHHHHHHHHHHhCChh
Q psy9817 59 LINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRI-KAVRLEY--STAHKNLVQALRKAPQT 128 (231)
Q Consensus 59 l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri-~~~~~~y--~~A~~~L~~A~~~~p~~ 128 (231)
....+-..|+..+.++.|...+.+.. .|+ -...++.+|.+ +.-.+++ .+|...+..|+...|.+
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 34556678888899999888886542 232 24566778888 7788888 99999999999887764
No 178
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=80.37 E-value=11 Score=31.23 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=64.6
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHH
Q psy9817 19 CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEWAR 96 (231)
Q Consensus 19 ~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~ 96 (231)
+|.-++......+..+..+..+-.++. .++......++.....+...|.++.|..++.+. .+|+ ...
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 204 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKARE-----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------IPE 204 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHT-----STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHH
Confidence 788888887777888887765543332 222222223333222233479999999998654 2343 245
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
+..-.|.+..-.+++.+|...++.|+..+
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 66677888888899999999999999874
No 179
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.37 E-value=4.7 Score=31.10 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=34.7
Q ss_pred hhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 92 NEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 92 ~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++-.|+||++.-+.=.++|++|..+....++.-|.+
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 4688999999999999999999999999999999975
No 180
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.00 E-value=3.4 Score=28.99 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=43.2
Q ss_pred HHhcCC--hhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 67 YLHYNL--YDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 67 Yf~~~~--~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
|+..+. .+.|..++.+.-- ..++-++=++++|..++-+++|.+|..+++.++...|.
T Consensus 17 ~~~~~~~~~~~A~~~l~~AL~----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 17 YYLHKQAMTDEVSLLLEQALQ----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHTTTTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHhcCCCCCHHHHHHHHHHHH----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445443 6788888765421 01345777888999999999999999999999998887
No 181
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=78.73 E-value=0.97 Score=34.46 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=39.3
Q ss_pred HHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCC
Q psy9817 64 LRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p 126 (231)
-..|++.|.++.|...+.+..- ..++....++-+|.++.-.+++.+|...+..|+...|
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 3456677777777777765421 1123356677777777777788888777777777666
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=78.41 E-value=13 Score=29.04 Aligned_cols=53 Identities=15% Similarity=0.036 Sum_probs=31.8
Q ss_pred cCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHH----hhcHHHHHHHHHHHHHh
Q psy9817 70 YNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRK 124 (231)
Q Consensus 70 ~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~ 124 (231)
.++++.|...+.+..--. +......=.|.+|.++.- ..++.+|..+++.|...
T Consensus 102 ~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp SCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 555666666654432100 001235566777777776 77788888888888766
No 183
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=78.35 E-value=5.9 Score=27.36 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.0
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
...++.+|.++.-.++|.+|...+..|+...|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 5678899999999999999999999999998864
No 184
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=77.68 E-value=4.6 Score=32.28 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHhcCChhhHHhhhhc----c-CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 64 LRNYLHYNLYDQADKLVKK----S-AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 64 lr~Yf~~~~~~~a~~l~~~----~-~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
.+..+..+.|+.|..+-+. . .-|+..+..+..+-++|.|-..+-+++|.+|...+.+|+..+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 5666788888888866532 1 223444567889999999999999999999999999998643
No 185
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.00 E-value=3.6 Score=28.39 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Q psy9817 101 LGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVV 143 (231)
Q Consensus 101 ~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~ 143 (231)
+|--.+.++++.+|-.||..|+.-||++ +-...|++--+|
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP---~~LL~i~q~tlP 62 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP---QQLLQVLQQTLP 62 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC---HHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH---HHHHHHHHhhCC
Confidence 5777788999999999999999999985 333444444443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=76.37 E-value=7.5 Score=33.98 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCChhhHHhhhhccCC--CCC----------CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKSAF--PEN----------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~~~--p~~----------~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
.+.+=..|++.+.++.|...+.+..- |.. .........++.+|.++.-.++|.+|.++++.|+...|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 44556788999999999888754421 100 012456788899999999999999999999999998886
Q ss_pred h
Q psy9817 128 T 128 (231)
Q Consensus 128 ~ 128 (231)
+
T Consensus 306 ~ 306 (370)
T 1ihg_A 306 N 306 (370)
T ss_dssp C
T ss_pred h
Confidence 4
No 187
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=75.87 E-value=23 Score=27.55 Aligned_cols=103 Identities=13% Similarity=-0.002 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHh----cCChhhHHhhhhcc-CCC
Q psy9817 16 AAKCYFYHSRVHEL----TNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKS-AFP 86 (231)
Q Consensus 16 ~ak~~~y~~~~~e~----~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~----~~~~~~a~~l~~~~-~~p 86 (231)
.+.+++..+..++. ......... .++.+...++.++...-.+.|=.+|.. .++++.|...+.+. ..|
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~----~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 159 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAIT----LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS 159 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHH----HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHH----HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566777777765 334444443 334444444421223334455667777 78899999998665 222
Q ss_pred CCCCchhhHHHHhhHHHHHHH------hhcHHHHHHHHHHHHHhCChh
Q psy9817 87 ENASNNEWARFHFYLGRIKAV------RLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 87 ~~~~~~~~v~Y~YY~Gri~~~------~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.. ++ =.|.+|.+|.- ..++.+|..++..|...-+..
T Consensus 160 ~~---~~---a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 160 RT---GY---AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp CT---TH---HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred CC---HH---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 21 11 25788998874 349999999999999886653
No 188
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.39 E-value=5.5 Score=31.07 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=34.0
Q ss_pred hhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 93 EWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 93 ~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
++-.|+||++.-+.=.++|++|..+....++.-|.+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 678899999999999999999999999999999975
No 189
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=75.33 E-value=16 Score=32.68 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc--CCCCCCCchhh
Q psy9817 17 AKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS--AFPENASNNEW 94 (231)
Q Consensus 17 ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~ 94 (231)
+.+|.-++......+.++..+..+-.++. .++......+....-.|...|.++.|..++... ..|+ .
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-----~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~------~ 424 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARE-----DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------I 424 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT------C
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC------C
Confidence 35788888777777777777765544332 222222222222222344689999999998654 2343 2
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCC
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPD 153 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~ 153 (231)
..+..-.|.+..-.|++.+|...+..|+..+|.+ ......+...++-.+.-.|+..+
T Consensus 425 ~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~--~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 425 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP--PEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC--GGGCHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444556666777899999999999999987753 12233345555656666786433
No 190
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=74.06 E-value=2.9 Score=30.42 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=36.4
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH---HHHhcCCCCC
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVV---VELLLGDIPD 153 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~---v~LllG~iP~ 153 (231)
-+|--.+.+|++..|-.||..|+.-||++ +-...|++--+| .++++=++|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP---~~LL~i~q~TlP~~Vf~~Li~~l~~ 78 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQP---QQLLQVLQQTLPPPVFQMLLTKLPT 78 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCH---HHHHHHHHHHSCCHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH---HHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 36777788899999999999999999984 445555665555 3333444554
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=73.75 E-value=3.8 Score=37.18 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHhcCChhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 65 RNYLHYNLYDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 65 r~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
..|++.+.++.|...+.+.. .| +....++.+|.++.-+++|.+|.+.++.|++..|.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35678899999998886542 23 337788999999999999999999999999988864
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=73.65 E-value=24 Score=31.50 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCC
Q psy9817 12 SDLIAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENA 89 (231)
Q Consensus 12 ~d~~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~ 89 (231)
++.+.+.+|+..+.++..+++.+.....+-.++. .++..... ...+-..|.+.+.++.|...+.+.. .|+
T Consensus 312 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a-~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-- 383 (457)
T 1kt0_A 312 SESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-----LDSANEKG-LYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-- 383 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCHHH-HHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCccHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Confidence 4556688999999999999998888766644443 23322222 3445678999999999999997652 233
Q ss_pred CchhhHHHHhhHHHHHHHhhcHHHHHHHHH
Q psy9817 90 SNNEWARFHFYLGRIKAVRLEYSTAHKNLV 119 (231)
Q Consensus 90 ~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~ 119 (231)
-..-++.+|.++...+++.+|...+.
T Consensus 384 ----~~~a~~~l~~~~~~~~~~~~a~~~~~ 409 (457)
T 1kt0_A 384 ----NKAARLQISMCQKKAKEHNERDRRIY 409 (457)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23457789999999999999987643
No 193
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=70.06 E-value=5.9 Score=27.75 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=37.7
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhh-hHHHHHHHHHHHHHHhcCCCC
Q psy9817 97 FHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAV-GFRQTTQKLAVVVELLLGDIP 152 (231)
Q Consensus 97 Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~-~~~~~ilk~lI~v~LllG~iP 152 (231)
=.|-+|..++-+++|.+|...|..|+...+..... .....++..|..+-.-+|++.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~ 63 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHH
Confidence 35789999999999999999999999764322111 123445555555555566543
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=69.56 E-value=11 Score=29.55 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=38.1
Q ss_pred hhhHHhhhhccC--CCCCCCchhhHHHHhhHHHHHHHh-----------hcHHHHHHHHHHHHHhCChh
Q psy9817 73 YDQADKLVKKSA--FPENASNNEWARFHFYLGRIKAVR-----------LEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 73 ~~~a~~l~~~~~--~p~~~~~~~~v~Y~YY~Gri~~~~-----------~~y~~A~~~L~~A~~~~p~~ 128 (231)
++.|...+.+.. -| +...-+|.+|..+.-. ++|.+|.++++.|+..-|.+
T Consensus 62 ~~eAi~~le~AL~ldP------~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDP------KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCc------CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 457777765542 23 3455678899999876 49999999999999999975
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=67.66 E-value=17 Score=30.91 Aligned_cols=101 Identities=10% Similarity=0.043 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCCCCchh
Q psy9817 16 AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPENASNNE 93 (231)
Q Consensus 16 ~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~~~~~~ 93 (231)
...+|+..+.++...++.+.....+-.++. .++... -....+-..|...+.++.|...+.+.. .|+
T Consensus 229 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~-----~~p~~~-~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~------ 296 (338)
T 2if4_A 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLT-----EEEKNP-KALFRRGKAKAELGQMDSARDDFRKAQKYAPD------ 296 (338)
T ss_dssp HTHHHHHHHHHHHTTTCCHHHHHHHHHHHH-----HCTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------
Confidence 335899999999988888887766644443 233222 233455778999999999999997763 233
Q ss_pred hHHHHhhHHHH-HHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 94 WARFHFYLGRI-KAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 94 ~v~Y~YY~Gri-~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
-..-+..++.+ ....+...+|...+..++...|.+
T Consensus 297 ~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 297 DKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 12334556666 556778888999999999888865
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=66.38 E-value=26 Score=27.33 Aligned_cols=71 Identities=18% Similarity=0.082 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhhcc-----CCCCCC---CchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHh-----
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVKKS-----AFPENA---SNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRK----- 124 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~~~-----~~p~~~---~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~----- 124 (231)
......=..+|+.+.|+.|-....+. .+|+.. ..+.....++-.|.++.-.++|.+|..+++.|+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 33344456778999999999887543 223211 11234558889999999999999999999999998
Q ss_pred --CChh
Q psy9817 125 --APQT 128 (231)
Q Consensus 125 --~p~~ 128 (231)
-|..
T Consensus 92 e~~pd~ 97 (159)
T 2hr2_A 92 ELNQDE 97 (159)
T ss_dssp CTTSTH
T ss_pred cCCCch
Confidence 7764
No 197
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=64.94 E-value=40 Score=24.98 Aligned_cols=33 Identities=12% Similarity=-0.146 Sum_probs=23.3
Q ss_pred HHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 95 ARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 95 v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
...+|.+|.++.-.+++.+|..++..+++..|.
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 455666777777777777777777777776664
No 198
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=63.26 E-value=60 Score=26.47 Aligned_cols=102 Identities=14% Similarity=0.003 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC--CCCC---------
Q psy9817 20 YFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA--FPEN--------- 88 (231)
Q Consensus 20 ~~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~--~p~~--------- 88 (231)
++-.+....-.+..+.....+-..+ ..+++.... ...+-..|.+.|.++.|...+.+.. .|+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al-----~~~P~~~~a-~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAW-----QLSNQNGEI-GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-----HHTTSCHHH-HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-----HhCCcchhH-HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 4555555555666666665443322 223332222 3445688999999999999987652 1320
Q ss_pred -------------------CCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 89 -------------------ASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 89 -------------------~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
...++-...+|-+|.++.-.+++.+|.+.|..+++.-|.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 001123445556666666666666666666666665554
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=61.70 E-value=57 Score=29.12 Aligned_cols=58 Identities=14% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 66 NYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 66 ~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
.++..|.++.|...+.+..--+ +. ...+..+|.++...|++.+|.+++..|++..|..
T Consensus 286 ~~l~~gd~d~A~~~l~rAl~Ln----~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 286 SALVKGKTDESYQAINTGIDLE----MS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC----CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHhCCCHHHHHHHHHHHHhcC----CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 3445599999999986542111 11 3455889999999999999999999999999964
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=59.62 E-value=11 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.031 Sum_probs=27.1
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHHhCChh
Q psy9817 99 FYLGRIKAVRLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 99 YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~ 128 (231)
|-.|..++-.++|.+|.+.++.|+...|.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 457899999999999999999999998875
No 201
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=59.29 E-value=83 Score=26.74 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccC-CCCCCCchhhHHHHh
Q psy9817 21 FYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSA-FPENASNNEWARFHF 99 (231)
Q Consensus 21 ~y~~~~~e~~~~l~~i~~~l~~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~-~p~~~~~~~~v~Y~Y 99 (231)
--|+...--.++.+..+..+-... ..++... ..-.+-..|++.+.++.+...+.... .|+ +.....-+|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~-----~~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d---~~~~~~a~~ 175 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAP-----VAGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWPD---KFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSC-----CTTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC---HHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----hcCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccCC---cccHHHHHH
Confidence 345666666667777776552211 1223222 22233348999999999999996442 221 112345679
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 100 YLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 100 Y~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
|+|..+.-.+++.+|..+|++|..
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc
Confidence 999999999999999999999984
No 202
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=57.55 E-value=4.1 Score=33.88 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=48.7
Q ss_pred HHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhCCh
Q psy9817 63 LLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQ 127 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~ 127 (231)
+-..+++.|.++.|...+.+. ..| +....++-+|++++-++++.+|...|..+....|.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~ 183 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSN------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD 183 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc
Confidence 456778999999999998654 233 33567899999999999999999999999988785
No 203
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=55.21 E-value=41 Score=24.29 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.8
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcc
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYG 192 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~ 192 (231)
.....|++|++.||..+-.+++..|-
T Consensus 101 ~eH~~I~~Ai~~~D~~~A~~~~~~Hl 126 (140)
T 3sxm_A 101 REHKELIERIISGDKEGAIEKLKEHL 126 (140)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44678999999999999999998874
No 204
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.09 E-value=13 Score=37.07 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=40.7
Q ss_pred HHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (231)
++..++..+.++.+..+.+-.. . +...+ |..||+++..|++.+|.++|+.|-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~--~----t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN--S----DPIAV--YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC--S----SHHHH--HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC--C----ChHHH--HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5677788889998887765332 1 33444 889999999999999999998875
No 205
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=54.92 E-value=53 Score=28.90 Aligned_cols=51 Identities=20% Similarity=0.070 Sum_probs=27.4
Q ss_pred cCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHH----hhcHHHHHHHHHHHHHhCC
Q psy9817 70 YNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAV----RLEYSTAHKNLVQALRKAP 126 (231)
Q Consensus 70 ~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~~p 126 (231)
.++++.|...+.+..-.. ...-.|.+|.++.- .+++.+|..+++.|....|
T Consensus 380 ~~~~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 556666666654432110 12334556666665 5666666666666666553
No 206
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=53.70 E-value=75 Score=27.87 Aligned_cols=28 Identities=7% Similarity=-0.072 Sum_probs=14.3
Q ss_pred HHhhHHHHHHH----hhcHHHHHHHHHHHHHh
Q psy9817 97 FHFYLGRIKAV----RLEYSTAHKNLVQALRK 124 (231)
Q Consensus 97 Y~YY~Gri~~~----~~~y~~A~~~L~~A~~~ 124 (231)
-.+.+|.++.- .+++.+|.+++..|...
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence 34455555554 55555555555555543
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=52.34 E-value=55 Score=23.65 Aligned_cols=76 Identities=18% Similarity=0.005 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHHHHh----cCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHH----hhcHHH
Q psy9817 42 ARLRIATLRNDFEGQAVLINCLLRNYLH----YNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAV----RLEYST 113 (231)
Q Consensus 42 ~~~r~~~lr~d~~~~~~l~N~Llr~Yf~----~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~----~~~y~~ 113 (231)
..++.++..+++..+.. |=.+|.. .++++.|...+.+..-. ....=.|.+|.+|.- ..++.+
T Consensus 46 ~~~~~Aa~~g~~~a~~~----Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 46 QYLSKACELNSGNGCRF----LGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHH----HHHHHHcCCCCCccHHHHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 33444544444444333 3344666 67888888887654211 113335778888887 889999
Q ss_pred HHHHHHHHHHhCCh
Q psy9817 114 AHKNLVQALRKAPQ 127 (231)
Q Consensus 114 A~~~L~~A~~~~p~ 127 (231)
|.+++..|.+.-+.
T Consensus 116 A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 116 AVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCH
Confidence 99999998876443
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=46.15 E-value=1.3e+02 Score=26.27 Aligned_cols=16 Identities=13% Similarity=-0.139 Sum_probs=8.0
Q ss_pred HhhcHHHHHHHHHHHH
Q psy9817 107 VRLEYSTAHKNLVQAL 122 (231)
Q Consensus 107 ~~~~y~~A~~~L~~A~ 122 (231)
..+++.+|.+++..|.
T Consensus 263 ~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 263 ELGDVEQMMKYLDNGR 278 (452)
T ss_dssp GGCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3445555555555554
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=45.75 E-value=46 Score=24.08 Aligned_cols=72 Identities=13% Similarity=-0.070 Sum_probs=50.4
Q ss_pred HHHHHHhhcCCcchhHHHHHHHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHH----hhcHHHHHHH
Q psy9817 42 ARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAV----RLEYSTAHKN 117 (231)
Q Consensus 42 ~~~r~~~lr~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~----~~~y~~A~~~ 117 (231)
..++.++..+++..+ |=.+|.....++.|...+.+..-. .-..=.|.+|.+|.- ..++.+|.++
T Consensus 16 ~~~~~aa~~g~~~a~------lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 16 QYYVKACELNEMFGC------LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHTTCTTHH------HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred HHHHHHHcCCCHhhh------HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 344555555666555 446677777888888887654211 224456788999887 8999999999
Q ss_pred HHHHHHhC
Q psy9817 118 LVQALRKA 125 (231)
Q Consensus 118 L~~A~~~~ 125 (231)
++.|.+.-
T Consensus 84 ~~~Aa~~g 91 (138)
T 1klx_A 84 YSKACGLN 91 (138)
T ss_dssp HHHHHHTT
T ss_pred HHHHHcCC
Confidence 99999763
No 210
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.18 E-value=24 Score=35.78 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHHHHHhcCChhhHHhhhhccCCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHH
Q psy9817 62 CLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (231)
Q Consensus 62 ~Llr~Yf~~~~~~~a~~l~~~~~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (231)
.++..+++.+.++.+..+.+-. |. +...+ |..||+++..+++.+|.++|..|-
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~--~~----~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL--NS----DPIAV--YLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS--CC----CHHHH--HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhhc--cC----CcHHH--HHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4556677778888777765422 11 33343 889999999999999999998874
No 211
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=41.16 E-value=1.3e+02 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHhh-----cHHHHHHHHHHHH
Q psy9817 96 RFHFYLGRIKAVRL-----EYSTAHKNLVQAL 122 (231)
Q Consensus 96 ~Y~YY~Gri~~~~~-----~y~~A~~~L~~A~ 122 (231)
.=.|.+|.++. ++ ++.+|..++..|.
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 34577899888 66 9999999999998
No 212
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=40.78 E-value=38 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy9817 170 FQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 170 ~~L~~AVr~Gdl~~F~~~l~~~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~YsrIsl~d 230 (231)
..|.+...+||..+|=+.++...+.+ ..|.-+...+-+....-+..+|++||+++
T Consensus 103 ~~L~~~L~~~~y~~fW~~l~~~~~l~------~~i~gf~dsIR~~I~~~i~~aY~sI~~~~ 157 (226)
T 1rz4_A 103 LYLGDLLETCHFQAFWQALDENMDLL------EGITGFEDSVRKFICHVVGITYQHIDRWL 157 (226)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTTCHHH------HTSTTHHHHHHHHHHHHHHHHCSEECHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcChhHH------HHHhHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 47888999999999999886542211 12222334455566778899999998754
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=38.05 E-value=2.3e+02 Score=25.68 Aligned_cols=109 Identities=5% Similarity=-0.082 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhh--cCCcchhHHHHHHHHHHHHhcCChhhHHhhhhcc------CCC
Q psy9817 15 IAAKCYFYHSRVHELTNNLDKVRSFLNARLRIATL--RNDFEGQAVLINCLLRNYLHYNLYDQADKLVKKS------AFP 86 (231)
Q Consensus 15 ~~ak~~~y~~~~~e~~~~l~~i~~~l~~~~r~~~l--r~d~~~~~~l~N~Llr~Yf~~~~~~~a~~l~~~~------~~p 86 (231)
-.|.++--.+.++.-.++.++..+..-.++....- -.+.-..+...|.|=..|...|.++.|..++.++ .+.
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35667777777777788888777766555544322 2333456667788899999999999999998543 232
Q ss_pred CCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHHhC
Q psy9817 87 ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKA 125 (231)
Q Consensus 87 ~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~~~ 125 (231)
+..| ..+.=.=-++..++-++.|.+|+..+..|-..+
T Consensus 429 ~~Hp--~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 429 PSHP--ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp TTSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 222222467778888999999999999986543
No 214
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=37.31 E-value=75 Score=27.44 Aligned_cols=47 Identities=30% Similarity=0.330 Sum_probs=36.9
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHhcCCCCCHHHhhH
Q psy9817 98 HFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQKLAVVVELLLGDIPDRQIFRQ 159 (231)
Q Consensus 98 ~YY~Gri~~~~~~y~~A~~~L~~A~~~~p~~~~~~~~~~ilk~lI~v~LllG~iP~~~ll~~ 159 (231)
+|=.|+-++-++++-+|+++...|+.+- .+ . .+ .-.|-.|+..+|.|
T Consensus 133 ~y~~~K~~l~~~~~ldAY~~vi~aLhh~-----Ar-------L-~v--ie~G~~pe~tvw~q 179 (290)
T 3c18_A 133 RFQDGRNLFSRGNYYDAYTHVHHALHHL-----AR-------L-SV--LEKGAHPEVVVWEQ 179 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH-------H-HH--HHTTCCCCTTHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHH-----HH-------h-he--eccCCcCchhHHHH
Confidence 5778999999999999999999999651 11 1 11 23699999999986
No 215
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=37.06 E-value=6 Score=25.61 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=10.9
Q ss_pred ccccchhhhHHHH
Q psy9817 6 SENRRTSDLIAAK 18 (231)
Q Consensus 6 ~~~~r~~d~~~ak 18 (231)
-+|||++|.+.|+
T Consensus 24 lQNRraLDlL~a~ 36 (53)
T 1y4m_A 24 LQNRRGLDMLTAA 36 (53)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3699999998875
No 216
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=34.97 E-value=6.8 Score=25.54 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=10.8
Q ss_pred ccccchhhhHHHH
Q psy9817 6 SENRRTSDLIAAK 18 (231)
Q Consensus 6 ~~~~r~~d~~~ak 18 (231)
-+|||++|.+.|+
T Consensus 26 lQNRraLD~L~a~ 38 (55)
T 1mof_A 26 LQNRRGLDLLFLK 38 (55)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 3699999998875
No 217
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.63 E-value=1.1e+02 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHcCCHHHHHHHHHHcc
Q psy9817 166 LSPYFQLTQAVRMGELQKFNEVLTTYG 192 (231)
Q Consensus 166 L~~Y~~L~~AVr~Gdl~~F~~~l~~~~ 192 (231)
......|++|++.||..+-.+++..|-
T Consensus 195 ~~eH~~I~~Ai~~~D~~~A~~~m~~Hl 221 (239)
T 2hs5_A 195 LTRNHEIYDALAAGNTEAAGQLLKTYL 221 (239)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344679999999999999999999884
No 218
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.13 E-value=5.5 Score=27.96 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCC
Q psy9817 207 LRHNVIKTAIRSIGASYSRITPAK 230 (231)
Q Consensus 207 lr~~v~R~liRki~l~YsrIsl~d 230 (231)
|+..++...+|+++..|++|++++
T Consensus 12 L~~~v~E~nl~~is~~Y~~Isl~~ 35 (84)
T 1ufm_A 12 LDRAVIEHNLLSASKLYNNITFEE 35 (84)
T ss_dssp CCHHHHHHHHHHHHHSCSEEEHHH
T ss_pred HHHHHHHHHHHHHHHhcCeeeHHH
Confidence 345677778888999999999864
No 219
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.52 E-value=3.1e+02 Score=24.29 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=29.1
Q ss_pred HHHHHHhcCChhhHHhhhhcc--CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHH
Q psy9817 63 LLRNYLHYNLYDQADKLVKKS--AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQAL 122 (231)
Q Consensus 63 Llr~Yf~~~~~~~a~~l~~~~--~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~ 122 (231)
|.+.|+..+.|..|..++.+. .........+.++=+-.-.++|...+|+.+|...++.|-
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555555555555555433 123333334445555555555555555555555555554
No 220
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=28.24 E-value=2.2e+02 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=23.3
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....|++|++.||..+..+++..|-.
T Consensus 176 ~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 202 (218)
T 3sxy_A 176 REHKELIERIISGDKEGAIEKLKEHLK 202 (218)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446799999999999999999998843
No 221
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=25.36 E-value=71 Score=27.72 Aligned_cols=89 Identities=11% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHh-------cCCCCCHHHhhHHHHhhcccchHHHHHHHH---------------cCCHHHHHHHHHH
Q psy9817 133 FRQTTQKLAVVVELL-------LGDIPDRQIFRQAVLRRALSPYFQLTQAVR---------------MGELQKFNEVLTT 190 (231)
Q Consensus 133 ~~~~ilk~lI~v~Ll-------lG~iP~~~ll~~~~~~~~L~~Y~~L~~AVr---------------~Gdl~~F~~~l~~ 190 (231)
|..+-.-|.|+..|. +.++| ..+++.|.++.++ .+..|+. .||...|=+.+..
T Consensus 114 ne~EF~aY~lL~~l~~~~~~~~l~~Lp-~~i~~~p~Vq~AL----~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~ 188 (316)
T 3t5v_A 114 NEAEFRAYALLSKIRDPQYDENIQRLP-KHIFQDKLVQMAL----CFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS 188 (316)
T ss_dssp THHHHHHHHHHHSTTCTHHHHHHTTSC-HHHHTSHHHHHHH----HHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhccchHHHHHHhCC-HHHhcCHHHHHHH----HHHHHHHhcccccccccccccccchHHHHHHHHhc
Confidence 444444555554442 23345 3455656555444 3556654 3888888887765
Q ss_pred cchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhc----cccCC
Q psy9817 191 YGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYS----RITPA 229 (231)
Q Consensus 191 ~~~~f~~dg~y~Lv~rlr~~v~R~liRki~l~Ys----rIsl~ 229 (231)
-..-+... .++++.-.-+-+..++.++.+|. .+|++
T Consensus 189 ~~~pyL~a---clle~~~~~vR~~AL~~i~kay~~k~~~~pl~ 228 (316)
T 3t5v_A 189 PSLPLLMG---FFLQMHLTDIRFYALRALSHTLNKKHKPIPFI 228 (316)
T ss_dssp TTSCHHHH---HHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHH
T ss_pred cCCChHHH---HHHHHHHHHHHHHHHHHHHHHhccCCCCcCHH
Confidence 32222211 24444444455567777888995 56654
No 222
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=25.00 E-value=66 Score=18.64 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=14.6
Q ss_pred HHHHHHHHH-HHHHHhcCCCCCH
Q psy9817 133 FRQTTQKLA-VVVELLLGDIPDR 154 (231)
Q Consensus 133 ~~~~ilk~l-I~v~LllG~iP~~ 154 (231)
++..++||| .||+++..+..++
T Consensus 3 ~r~LALKYLLTPv~~l~a~~Ssr 25 (36)
T 3bua_E 3 FRGLALKYLLTPVNFFQAGYSSR 25 (36)
T ss_pred hHHHHHHHHhhhHHHHhcccchh
Confidence 566778876 4687776555544
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=24.53 E-value=3.4e+02 Score=23.89 Aligned_cols=61 Identities=7% Similarity=-0.121 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChhhHHhhhhcc------CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 60 INCLLRNYLHYNLYDQADKLVKKS------AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 60 ~N~Llr~Yf~~~~~~~a~~l~~~~------~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
.+. +.-+.+.+.++.|..+..+. .+++ ...+.++-+.-+|.+|.-+|+|.+|..+...|+.
T Consensus 291 l~~-ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~--~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 291 LKK-IEELKAHWKWEQVLAMCQAIISSNSERLPD--INIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHHHHTCSSCCCCT--TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhhccHHHHHHHHHHHHHhccCcCCc--cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 344 33455778999888877432 2222 2357888899999999999999999999999985
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=24.29 E-value=3.7e+02 Score=23.79 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=40.5
Q ss_pred cCChhhHHhhhhcc------CCCCCCCchhhHHHHhhHHHHHHHhhcHHHHHHHHHHHHH
Q psy9817 70 YNLYDQADKLVKKS------AFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALR 123 (231)
Q Consensus 70 ~~~~~~a~~l~~~~------~~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A~~~L~~A~~ 123 (231)
.+.|+.|..+..++ .+.+ ...+.++-+.-+|.+|.-+|+|.+|..++++|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~--~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFED--SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCT--TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccCh--hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 45678888776432 2322 2357888889999999999999999999999996
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.42 E-value=72 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=25.3
Q ss_pred HhhHHHHHHH-----hhcHHHHHHHHHHHHHhCChh
Q psy9817 98 HFYLGRIKAV-----RLEYSTAHKNLVQALRKAPQT 128 (231)
Q Consensus 98 ~YY~Gri~~~-----~~~y~~A~~~L~~A~~~~p~~ 128 (231)
+-++|.+|.. -|+..+|.+||+.|+..+|..
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 3456666766 599999999999999999963
No 226
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=21.94 E-value=1.5e+02 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.6
Q ss_pred cchHHHHHHHHcCCHHHHHHHHHHcch
Q psy9817 167 SPYFQLTQAVRMGELQKFNEVLTTYGN 193 (231)
Q Consensus 167 ~~Y~~L~~AVr~Gdl~~F~~~l~~~~~ 193 (231)
.....|++|++.||..+-.+++..|-.
T Consensus 184 ~eH~~I~~Ai~~~d~~~A~~~~~~Hl~ 210 (222)
T 3ihu_A 184 DDYRRIATAVLAGEPDAAEAAGAAHVK 210 (222)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446899999999999999999998854
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=21.02 E-value=3e+02 Score=21.54 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHhhhhcc-----C----------------CCCCCCchhhHHHHhhHHHHHHHhhcHHHH
Q psy9817 56 QAVLINCLLRNYLHYNLYDQADKLVKKS-----A----------------FPENASNNEWARFHFYLGRIKAVRLEYSTA 114 (231)
Q Consensus 56 ~~~l~N~Llr~Yf~~~~~~~a~~l~~~~-----~----------------~p~~~~~~~~v~Y~YY~Gri~~~~~~y~~A 114 (231)
.+-+...+-..+|+.++|..|.+.++.+ . .|+......-++-+|=.++++.-.+++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 3345566778899999999999887431 1 111101112356667799999999999999
Q ss_pred HHHHHH
Q psy9817 115 HKNLVQ 120 (231)
Q Consensus 115 ~~~L~~ 120 (231)
-..|+.
T Consensus 142 i~~Le~ 147 (167)
T 3ffl_A 142 IAILDG 147 (167)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 988764
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.79 E-value=1.7e+02 Score=26.55 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCChhhHHhhhh
Q psy9817 58 VLINCLLRNYLHYNLYDQADKLVK 81 (231)
Q Consensus 58 ~l~N~Llr~Yf~~~~~~~a~~l~~ 81 (231)
.+.|.++..|.+.|.++.|..++.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~ 50 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYD 50 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 345666777777777777777774
No 229
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=20.35 E-value=1.2e+02 Score=16.76 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.6
Q ss_pred chHH--HHHHHHHHHHHHHHHHHHHH
Q psy9817 199 YTFK--LILRLRHNVIKTAIRSIGAS 222 (231)
Q Consensus 199 g~y~--Lv~rlr~~v~R~liRki~l~ 222 (231)
|+|. |+.+++. -++..+||+.+.
T Consensus 2 gNYiLdLl~~lh~-~~~~~ikk~~lg 26 (28)
T 2ajj_A 2 GNYVLDLIYSLHK-QINRGLKKIVLG 26 (28)
T ss_dssp CCSHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH-HHHHHHHHHhhc
Confidence 4553 7888854 678888988764
Done!