RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9817
(231 letters)
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 48.4 bits (116), Expect = 1e-07
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 169 YFQLTQAVRMGELQKFNEVLTTYGNQFRTDYTFKLILRLRHNVIKTAIRSIGASYSRITP 228
Y L +A G+L F E+L ++ D +L+ LR + + +R + YS I+
Sbjct: 1 YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60
Query: 229 AKI 231
+ +
Sbjct: 61 SDL 63
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 28.0 bits (63), Expect = 1.4
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 202 KLILRLRHNVIKTAIRSIGASYSRITPAKI 231
+L+ RL+ + T + + YS I+ + +
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDL 30
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 28.0 bits (63), Expect = 1.4
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 202 KLILRLRHNVIKTAIRSIGASYSRITPAKI 231
+L+ RL+ + T + + YS I+ + +
Sbjct: 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDL 30
>gnl|CDD|221862 pfam12930, DUF3836, Family of unknown function (DUF3836). Family
of uncharacterized proteins found in Bacteroidales
species. Test.
Length = 132
Score = 28.5 bits (64), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 63 LLRNYLHYNL-YDQADKLVKKSAFPENASNNEWARFH 98
L N++ YN YD ++ +K A+ N+ N W ++
Sbjct: 57 TLTNHMKYNYKYDDQGRVTEKEAYKWNSVKNTWEPYY 93
>gnl|CDD|213341 cd05392, RasGAP_Neurofibromin_like, Ras-GTPase Activating Domain of
proteins similar to neurofibromin. Neurofibromin-like
proteins include the Saccharomyces cerevisiae RasGAP
proteins Ira1 and Ira2, the closest homolog of
neurofibromin, which is responsible for the human
autosomal dominant disease neurofibromatosis type I
(NF1). The RasGAP Ira1/2 proteins are negative
regulators of the Ras-cAMP signaling pathway and
conserved from yeast to human. In yeast Ras proteins are
activated by GEFs, and inhibited by two GAPs, Ira1 and
Ira2. Ras proteins activate the cAMP/protein kinase A
(PKA) pathway, which controls metabolism, stress
resistance, growth, and meiosis. Recent studies showed
that the kelch proteins Gpb1 and Gpb2 inhibit Ras
activity via association with Ira1 and Ira2. Gpb1/2 bind
to a conserved C-terminal domain of Ira1/2, and loss of
Gpb1/2 results in a destabilization of Ira1 and Ira2,
leading to elevated levels of Ras2-GTP and uninhibited
cAMP-PKA signaling. Since the Gpb1/2 binding domain on
Ira1/2 is conserved in the human neurofibromin protein,
the studies suggest that an analogous signaling
mechanism may contribute to the neoplastic development
of NF1.
Length = 317
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 28 ELTNNLDKVRSFLN--ARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADKL 79
L N D+++ FL+ + + D + + L YLH LY ++
Sbjct: 238 FLKKNSDRIQQFLSEVSTIPPTDPIFDESDEEPITADL--RYLHKFLYLHFLEI 289
>gnl|CDD|212164 cd11650, AT4G37440_like, Uncharacterized protein domain conserved
in plants. This domain contains an extensive protein
sequence fragment that appears conserved in a number of
plant proteins, including the gene product of
Arabidopsis thaliana locus AT4G37440, which has been
identified in transcriptional profiling as expressed at
different levels in white cabbage cultivars.
Length = 253
Score = 27.4 bits (61), Expect = 5.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 23 HSRVHELTNNLDKVRS 38
SRVH+L N L KV S
Sbjct: 237 QSRVHKLKNRLSKVMS 252
>gnl|CDD|107355 cd06360, PBP1_alkylbenzenes_like, Type I periplasmic binding
component of active transport systems that are predicted
be involved in anaerobic biodegradation of alkylbenzenes
such as toluene and ethylbenzene. This group includes
the type I periplasmic binding component of active
transport systems that are predicted be involved in
anaerobic biodegradation of alkylbenzenes such as
toluene and ethylbenzene; their substrate specificity is
not well characterized, however.
Length = 336
Score = 26.9 bits (60), Expect = 9.6
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 19/81 (23%)
Query: 82 KSAFP--ENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQK 139
+A + N F +KA R Y P AV Q
Sbjct: 243 ITALHYADTLDNPANQAF------VKAYRAAYP-----------DTPSVYAVQGYDAGQA 285
Query: 140 LAVVVELLLGDIPDRQIFRQA 160
L + +E + GD+ D Q A
Sbjct: 286 LILALEAVGGDLSDGQALIAA 306
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.387
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,615,479
Number of extensions: 1092882
Number of successful extensions: 1147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 17
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)