RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9817
         (231 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 31.7 bits (72), Expect = 0.015
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 207 LRHNVIKTAIRSIGASYSRITPAKI 231
           L   VI+  + S    Y+ IT  ++
Sbjct: 12  LDRAVIEHNLLSASKLYNNITFEEL 36


>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
           {Escherichia coli [TaxId: 562]}
          Length = 366

 Score = 29.1 bits (63), Expect = 0.42
 Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 1/144 (0%)

Query: 19  CYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQADK 78
                       +  +           +   +   +  +      +  +        A  
Sbjct: 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 234

Query: 79  LVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQALRKAPQTAAVGFRQTTQ 138
            ++ +A PE A+N+        + R + +  E+  A   L +    A     +       
Sbjct: 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294

Query: 139 KLAVVVELLLGDIPD-RQIFRQAV 161
            L   +    G   D +++   A+
Sbjct: 295 LLLNQLYWQAGRKSDAQRVLLDAL 318


>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 25.1 bits (54), Expect = 5.1
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 61  NCLLRNYLHYNLYDQADKLVKKSAFPENASNNEWARFHFYLGRIKAVRLEYSTAHKNLVQ 120
              L    + +   +   L+++       S  E   + FYL        EY  A K +  
Sbjct: 40  AWCLVRTRYNDDIRKGIVLLEE--LLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 97

Query: 121 ALRKAPQ 127
            L+  PQ
Sbjct: 98  LLQTEPQ 104


>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 290

 Score = 24.9 bits (53), Expect = 8.2
 Identities = 6/85 (7%), Positives = 18/85 (21%)

Query: 16  AAKCYFYHSRVHELTNNLDKVRSFLNARLRIATLRNDFEGQAVLINCLLRNYLHYNLYDQ 75
           AA      + ++ L   L+                 + +          + +        
Sbjct: 36  AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95

Query: 76  ADKLVKKSAFPENASNNEWARFHFY 100
           A   ++ +              +F 
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFK 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 803,831
Number of extensions: 35026
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 11
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)