BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9819
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 80 ICDECHDWTTGDHCQYCRAGSYGNATTQEG----CRKCDCNSHGN-SVLGVCDSITGECI 134
+C C T G C+ C G +G+ G CR C CN + + + +G C+ +TGEC+
Sbjct: 19 VCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECL 78
Query: 135 -CQDNTQGKNCERCLPGYYGDP 155
C NT G C+RC G++G+P
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNP 100
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 69 NNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGN---ATTQEGCRKCDCNSHGN-SVLG 124
N C G C +C T G +C C+ G +GN + C+ C CN +G
Sbjct: 65 NAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQS 124
Query: 125 VCDSITGECICQDNTQGKNCERCLPGYY 152
C+ +TG+C C + G++C C PGYY
Sbjct: 125 SCNPVTGQCQCLPHVSGRDCGTCDPGYY 152
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 80 ICDECHDWTTGDHCQYCRAGSYGNATTQEG----CRKCDCNSHGN-SVLGVCDSITGECI 134
+C C T G C+ C G +G+ G CR C CN + + + +G C+ +TGEC+
Sbjct: 21 VCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECL 80
Query: 135 -CQDNTQGKNCERCLPGYYGDP 155
C NT G C+RC G++G+P
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNP 102
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 69 NNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGN---ATTQEGCRKCDCNSHGN-SVLG 124
N C G C +C T G +C C+ G +GN + C+ C CN +G
Sbjct: 67 NAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQS 126
Query: 125 VCDSITGECICQDNTQGKNCERCLPGYY 152
C+ +TG+C C + G++C C PGYY
Sbjct: 127 SCNPVTGQCQCLPHVSGRDCGTCDPGYY 154
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 83 ECHDWTTGDHCQYCRAGSYG-NATTQEGCRKCDCNSHGNSVLG-VCDSITGECICQDNTQ 140
C G+ C C+ G Y +A GC+ C CN G G CDS TG C C+
Sbjct: 410 RCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVT 469
Query: 141 GKNCERCLPGYYGDPTDGGTC 161
G+ C++CLP ++G D C
Sbjct: 470 GQRCDQCLPQHWGLSNDLDGC 490
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 30/140 (21%)
Query: 65 NCLCNNHSTCVH------------GIGICDECHDWTTGDHCQYCRAGSYGNATTQ----E 108
C CN HS+ H G+CD C T G +C+ C+ + +
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPN 376
Query: 109 GCRKCDCNSHGNSVLGVCDS--------ITGECICQDNTQGKNCERCLPGYYG----DPT 156
C C C+ G+ G+CD I G+C C+ + +G+ C+ C G+Y DP
Sbjct: 377 LCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY 436
Query: 157 DGGTCYYQCMARGMLTGPGP 176
+C C G + G P
Sbjct: 437 GCKSC--ACNPLGTIPGGNP 454
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 48/122 (39%), Gaps = 37/122 (30%)
Query: 65 NCLCNNH-STCVHGIGICDE----------CHDWTTGDHCQYCRAGSY------GNATTQ 107
NC C H S C G+ +E C T G +C+ C +
Sbjct: 253 NCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNS 312
Query: 108 EGCRKCDCNSH--------------GNSVLGVCDSITGECICQDNTQGKNCERCLPGYYG 153
C+KC+CN H GN GVCD+ CQ NT G+NCE+C P Y+
Sbjct: 313 NACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDN------CQHNTMGRNCEQCKPFYFQ 366
Query: 154 DP 155
P
Sbjct: 367 HP 368
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 32/134 (23%)
Query: 41 GYCKGPPDYS-------CQCELGWTGVDCSV-----------------NCLCNNHSTCVH 76
G C G D+S C+C+L G C V +C CN T +
Sbjct: 392 GICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGT-IP 450
Query: 77 GIGICDE------CHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSIT 130
G CD C TG C C +G + +GCR CDC+ G ++ C +
Sbjct: 451 GGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDL-GGALNNSCSEDS 509
Query: 131 GECICQDNTQGKNC 144
G+C C + G+ C
Sbjct: 510 GQCSCLPHMIGRQC 523
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At Ph
3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 111 RKCDCNSHGN-SVLGVCDSITGECI-CQDNTQGKNCERCLPGYYGDP 155
R C CN + + + +G C+ +TGEC+ C NT G C+RC G++G+P
Sbjct: 1 RPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNP 47
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 135 CQDNTQGKNCERCLPGYYGDP 155
CQ +T G NCERCLPG++ P
Sbjct: 362 CQHHTTGINCERCLPGFFRAP 382
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 112 KCDCNSHGNS-VLGVCDSITGECICQDNTQGKNCERCLPGYYGDP 155
+C CN H + V D + C C+ NT G +CE+CLP + P
Sbjct: 254 RCKCNGHASECVKNEFDKLM--CNCKHNTYGVDCEKCLPFFNDRP 296
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 17/103 (16%)
Query: 66 CLCNNH-STCVHGIG---ICDECHDWTTGDHCQYC------RAGSYGNATTQEGCRKCDC 115
C CN H S CV +C+ C T G C+ C R A + C CDC
Sbjct: 255 CKCNGHASECVKNEFDKLMCN-CKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313
Query: 116 NSHG-----NSVLGVCDSITGECI-CQDNTQGKNCERCLPGYY 152
N + L G C C+DNT G CERC ++
Sbjct: 314 NGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFF 356
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 112 KCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGT 160
+C CN H + + V D+ C C+ NT G +C +C Y G P G+
Sbjct: 296 RCKCNLH--ATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 30 NASLCYNKC--IYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGI 78
N ++C C +G CK P D C+C+ GW G+ C C H CVHGI
Sbjct: 64 NRAICRQGCSPKHGSCKLPGD--CRCQYGWQGLYCDK---CIPHPGCVHGI 109
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 133 CICQDNTQGKNCERCLPGYYGDPTDG 158
C+CQ T G+NCE+ P Y + DG
Sbjct: 520 CVCQSGTYGENCEKQSPDYKSNAVDG 545
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHGNSVL---------GVCDSITGECICQDNTQGKNC 144
+Y + +A T+ R+C+ G GVC TGECIC G+ C
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGECICPPGFMGRTC 229
Query: 145 ERCLPGYYGDPTDGGTCYYQC 165
E+ + T G TC +C
Sbjct: 230 EKACELH----TFGRTCKERC 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,157,679
Number of Sequences: 62578
Number of extensions: 618503
Number of successful extensions: 1296
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 104
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)