RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9819
(377 letters)
>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
laminins are the major noncollagenous components of
basement membranes that mediate cell adhesion, growth
migration, and differentiation; the laminin-type
epidermal growth factor-like module occurs in tandem
arrays; the domain contains 4 disulfide bonds (loops
a-d) the first three resemble epidermal growth factor
(EGF); the number of copies of this domain in the
different forms of laminins is highly variable ranging
from 3 up to 22 copies.
Length = 50
Score = 61.2 bits (149), Expect = 1e-12
Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 113 CDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTCY 162
CDCN HG S+ G CD TG+C C+ NT G+ C+RC PGYYG P+ GG C
Sbjct: 2 CDCNGHG-SLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
Score = 33.9 bits (78), Expect = 0.008
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 66 CLCNNHST----CVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCR 111
C CN H + C G G C EC TTG C C G YG + GC+
Sbjct: 2 CDCNGHGSLSGQCDPGTGQC-ECKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50
>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V). This
family is like pfam00008 but has 8 conserved cysteines
instead of six.
Length = 49
Score = 56.6 bits (137), Expect = 7e-11
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 113 CDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGG 159
CDCN HG S+ CD TG+C+C+ G++C+RC PGYYG P+D G
Sbjct: 1 CDCNPHG-SLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPG 46
Score = 26.2 bits (58), Expect = 4.4
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 66 CLCNNH----STCVHGIGICDECHDWTTGDHCQYCRAGSYGNATT 106
C CN H TC G C C TG HC C+ G YG +
Sbjct: 1 CDCNPHGSLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLPSD 44
>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
domai.
Length = 46
Score = 53.1 bits (128), Expect = 1e-09
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 113 CDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDG 158
CDC+ G S G CD TG+C C+ N G+ C+RC PGYYGD G
Sbjct: 1 CDCDPGG-SASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPG 45
>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins
mostly known to be involved in development; not found in
prokaryotes, plants and yeast.
Length = 113
Score = 34.7 bits (80), Expect = 0.016
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 28/117 (23%)
Query: 189 WEGKDTPSRECLWIIGQSLDSNSTAPADIILLR-----LQPDINVPCNENAVYIYDGLPD 243
+ + C+W I P I L L+ N C+ + + IYD
Sbjct: 18 YPNNYPNNLNCVWTI-------EAPPGYRIRLTFEDFDLESSPN--CSYDYLEIYD---- 64
Query: 244 FVTSVGGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQI 298
G + S LG FC + + + +T+ ++ GF ATY
Sbjct: 65 -----GPSTSSPLLGRFCGSTLP---PPIISSGNSLTVRFRSDSSVTGRGFKATYSA 113
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 33.6 bits (78), Expect = 0.18
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 17/43 (39%)
Query: 302 PDKCPENRTCINNQCVCPPRRTGPDC------------QEEIC 332
P KC N CI CP RTG + EE+C
Sbjct: 14 PKKC--NYECIK---YCPVVRTGEETIEIDEDDGKPVISEELC 51
>gnl|CDD|220906 pfam10926, DUF2800, Protein of unknown function (DUF2800). This is
a family of uncharacterized proteins found in bacteria
and viruses. Some members of this family are annotated
as being Phi APSE P51-like proteins.
Length = 363
Score = 32.7 bits (75), Expect = 0.29
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 86 DWTTGDHCQYCRA 98
++ G+HC++C+A
Sbjct: 208 EFKPGEHCRFCKA 220
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 30.4 bits (69), Expect = 0.43
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 29/116 (25%)
Query: 189 WEGKDTPSRECLWIIGQSLDSNSTAPAD--IIL----LRLQPDINVPCNENAVYIYDGLP 242
+ + +C+W I AP I L L+ N C + V IYDG
Sbjct: 8 YPQSYPNNLDCVWTI--------RAPPGYRIELQFTDFDLESSDN--CEYDYVEIYDGPS 57
Query: 243 DFVTSVGGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYKQ--GKPSEGFNATY 296
S LG FC + V+ + S +T+ + GF+A Y
Sbjct: 58 AS---------SPLLGRFCGSEAPPP--VISSSSNSLTLTFVSDSSVQKRGFSARY 102
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain. Gelsolin/severin/villin
homology domain. Calcium-binding and actin-binding. Both
intra- and extracellular domains.
Length = 90
Score = 29.6 bits (67), Expect = 0.59
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 321 RRTGPDCQEEICPNECHEFLNHGTCDLLLTGVHI 354
R G LN G C +L TG I
Sbjct: 4 RVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEI 37
>gnl|CDD|234576 PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.
Length = 72
Score = 27.6 bits (62), Expect = 2.0
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 60 VDCSVNCLCNN----HSTCVHG---IGICDECHDWTTGD 91
+ +V C C N ST + +C +CH + TG
Sbjct: 10 EEVTVTCSCGNVFETRSTLGKDEINVDVCSKCHPFYTGK 48
>gnl|CDD|181342 PRK08271, PRK08271, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 623
Score = 29.2 bits (66), Expect = 3.7
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 77 GIGICDECH--DWTTGDHCQYC 96
I IC++CH D TG C C
Sbjct: 565 KITICNDCHHIDKRTGKRCPIC 586
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 29.2 bits (66), Expect = 4.2
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 18/46 (39%)
Query: 300 SC-PDKCPENRTCINNQCVCPPRRTGPDC------------QEEIC 332
C P KC CI CP RTG + EE+C
Sbjct: 12 RCQPKKC--GYECIK---YCPVVRTGKETIEIDEDTGKPVISEELC 52
>gnl|CDD|165214 PHA02887, PHA02887, EGF-like protein; Provisional.
Length = 126
Score = 27.2 bits (60), Expect = 7.0
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 36 NKCIYGYCKGPPDYS---CQCELGWTGVDCSV 64
+ CI G C D C C G+TG+ C
Sbjct: 92 DFCINGECMNIIDLDEKFCICNKGYTGIRCDE 123
>gnl|CDD|219677 pfam07974, EGF_2, EGF-like domain. This family contains EGF
domains found in a variety of extracellular proteins.
Length = 31
Score = 24.7 bits (54), Expect = 9.2
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 62 CSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
CS + +CN TCV G C C G C
Sbjct: 1 CSASGICNGRGTCVRPCGKCV-CDSGYQGATC 31
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.481
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,108,701
Number of extensions: 1621663
Number of successful extensions: 1162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 56
Length of query: 377
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 279
Effective length of database: 6,590,910
Effective search space: 1838863890
Effective search space used: 1838863890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)