RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9819
(377 letters)
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 90.3 bits (224), Expect = 6e-22
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQE---GCRKCDCNS 117
C+ N N C G C +C T G +C C+ G +GN C+ C CN
Sbjct: 57 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNP 116
Query: 118 HG-NSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGG 159
+G C+ +TG+C C + G++C C PGYY + G
Sbjct: 117 YGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQG 159
Score = 84.9 bits (210), Expect = 6e-20
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 66 CLCNNHSTCVH----GIGICDECHDWTTGDHCQYCRAGSYGNATTQEG----CRKCDCNS 117
C C S+C +C C T G C+ C G +G+ G CR C CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 118 HGN-SVLGVCDSITGECI-CQDNTQGKNCERCLPGYYGDPTDG 158
+ + + +G C+ +TGEC+ C NT G C+RC G++G+P
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP 103
Score = 46.7 bits (111), Expect = 2e-06
Identities = 15/53 (28%), Positives = 18/53 (33%)
Query: 113 CDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
C C + + C T GK CE C GY+GDP C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 83.6 bits (206), Expect = 1e-17
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 36 NKCIYGYCKGP------PDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTT 89
+C Y + P P+ C G + C + G C C
Sbjct: 358 EQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQC-RCKLHVE 416
Query: 90 GDHCQYCRAGSYGNATTQ-EGCRKCDCNSHGN-SVLGVCDSITGECICQDNTQGKNCERC 147
G+ C C+ G Y + GC+ C CN G CDS TG C C+ G+ C++C
Sbjct: 417 GERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQC 476
Query: 148 LPGYYGDPTDGGTC 161
LP ++G D C
Sbjct: 477 LPQHWGLSNDLDGC 490
Score = 70.5 bits (172), Expect = 2e-13
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 6/110 (5%)
Query: 36 NKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQY 95
+ C G+ + C+ C+ + C G C C TG C
Sbjct: 421 DVCKEGFYDLSAEDPYGCK----SCACNPLGTIPGGNPCDSETGYC-YCKRLVTGQRCDQ 475
Query: 96 CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE 145
C +G + +GCR CDC+ G ++ C +G+C C + G+ C
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGG-ALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 69.3 bits (169), Expect = 5e-13
Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 46/178 (25%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCS----------------------VNCLCNNH 71
+ +G C C G++C C CN H
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 323
Query: 72 STCVH------------GIGICDECHDWTTGDHCQYCRAGSYGNA----TTQEGCRKCDC 115
S+ H G+CD C T G +C+ C+ + + C C C
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTC 383
Query: 116 NSHGNSVLGVCDS--------ITGECICQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
+ G+ G+CD I G+C C+ + +G+ C+ C G+Y + C
Sbjct: 384 DPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSC 441
Score = 55.1 bits (132), Expect = 2e-08
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 59 GVDCSVNCLCNNH-STCVHGIGICDECHDW----------TTGDHCQYCRAGSY------ 101
+ NC C H S C G+ +E T G +C+ C +
Sbjct: 247 DMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRP 306
Query: 102 GNATTQEGCRKCDCNSHGNS-------VLGVCDSITGECI-CQDNTQGKNCERCLPGYYG 153
C+KC+CN H +S L + G C CQ NT G+NCE+C P Y+
Sbjct: 307 AEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQ 366
Query: 154 DPTDGGTCYYQC 165
P C
Sbjct: 367 HPERDIRDPNLC 378
Score = 46.2 bits (109), Expect = 1e-05
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 8/89 (8%)
Query: 82 DECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNS-------VLGVCDSITGECI 134
D + Y C C H + V + G C+
Sbjct: 224 HTLGDNLLDSRMEIREKYYYAVYDMVVRGN-CFCYGHASECAPVDGVNEEVEGMVHGHCM 282
Query: 135 CQDNTQGKNCERCLPGYYGDPTDGGTCYY 163
C+ NT+G NCE C+ Y+ P
Sbjct: 283 CRHNTKGLNCELCMDFYHDLPWRPAEGRN 311
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 74.8 bits (183), Expect = 4e-15
Identities = 26/119 (21%), Positives = 35/119 (29%), Gaps = 15/119 (12%)
Query: 56 GWTGVDCSVNCLCNNHSTCV---HGIGICDECHDWTTGDHCQYCRAGSYGNA------TT 106
+ C CN H++ + C T G C+ C +
Sbjct: 245 AISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAES 304
Query: 107 QEGCRKCDCNSHGNS-----VLGVCDSITGECI-CQDNTQGKNCERCLPGYYGDPTDGG 159
C CDCN L G C C+DNT G CERC ++
Sbjct: 305 ASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEA 363
Score = 51.7 bits (123), Expect = 1e-07
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 81 CDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQ 140
+ + ++ Y + +C CN H + + C C+ NT
Sbjct: 224 RLNTFGDEVFNEPKVLKSYYYAISDFA-VGGRCKCNGHASEC-VKNEFDKLMCNCKHNTY 281
Query: 141 GKNCERCLPGYYGDPTDGGTCYYQC 165
G +CE+CLP + P T
Sbjct: 282 GVDCEKCLPFFNDRPWRRATAESAS 306
Score = 49.0 bits (116), Expect = 1e-06
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 66 CLCNNHST----------CVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDC 115
C CN S G C C D T G C+ CR + T E C
Sbjct: 311 CDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNT-EACSPAAA 369
Query: 116 NSHG 119
+ H
Sbjct: 370 HHHH 373
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 70.7 bits (172), Expect = 1e-13
Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 27/164 (16%)
Query: 29 FNASLCYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTC------VHGIGICD 82
F + + G P + + + C+C+ H+ + +
Sbjct: 229 FLRTNTLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQC 288
Query: 83 ECHDWTTGDHCQYCRAGSY------GNATTQEGCRKCDCNSH--------------GNSV 122
C T G C C G + C+ C+C+ H +
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 123 LGVCDSITGECI-CQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
G C+ CQ +T G NCERCLPG++ P + C
Sbjct: 349 QDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVC 392
Score = 54.5 bits (130), Expect = 2e-08
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
N+C C G C + + N G G+C +C TTG +C
Sbjct: 318 SANECQSCNCHGHAY-DCYYD-----PEVDRREASQNQDNVYQGGGVCLDCQHHTTGINC 371
Query: 94 QYCRAGSYGNAT----TQEGCRKCDCNSHGN 120
+ C G + + CR + H +
Sbjct: 372 ERCLPGFFRAPDQPLDSPHVCRPAAAHHHHH 402
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 55.7 bits (133), Expect = 8e-09
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 84 CHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITG--ECICQDNTQG 141
+ ++ +C CN H N C G +C C+ NT G
Sbjct: 245 GGTYVQRENLYKYFYAISNIEV----IGRCKCNLHANL----CSMREGSLQCECEHNTTG 296
Query: 142 KNCERCLPGYYGDPTDGGTC 161
+C +C + G+
Sbjct: 297 PDCGKCKKNFRTRSWRAGSY 316
Score = 49.2 bits (116), Expect = 1e-06
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 13/87 (14%)
Query: 47 PDYSCQCELGWTGVDCSVNCLCNNH-STCVHGIGIC-DECHDWTTGDHCQYCRAGSYGNA 104
+ + + ++ C CN H + C G EC TTG C C+ +
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRS 310
Query: 105 T-----------TQEGCRKCDCNSHGN 120
+ C + H +
Sbjct: 311 WRAGSYLPLPHGSPNACAAAGSHHHHH 337
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 53.2 bits (127), Expect = 7e-08
Identities = 30/138 (21%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCL-CNNHSTCVHGIGICDECHDWTTGDH 92
Y +CE G +C+ C C N+ C G C C G
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHEDTGEC-ICPPGFMGRT 228
Query: 93 CQY-CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE-RCLPG 150
C+ C ++G C++ G C C C +G C C PG
Sbjct: 229 CEKACELHTFG-----RTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPG 283
Query: 151 YYGDP-------TDGGTC 161
+YG +G C
Sbjct: 284 FYGPDCKLRCSCNNGEMC 301
Score = 44.3 bits (104), Expect = 4e-05
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 65 NCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLG 124
+ + + T + C A +G +C+ G
Sbjct: 158 HAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGP--------ECNHLCTACMNNG 209
Query: 125 VCDSITGECICQDNTQGKNCER-CLPGYYGDP 155
VC TGECIC G+ CE+ C +G
Sbjct: 210 VCHEDTGECICPPGFMGRTCEKACELHTFGRT 241
Score = 41.6 bits (97), Expect = 3e-04
Identities = 22/145 (15%), Positives = 31/145 (21%), Gaps = 16/145 (11%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTG-------------VDCSVNCLCNNHSTCVHGIGI 80
C P Y C C GW G DC + C CNN C G
Sbjct: 248 GQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGC 307
Query: 81 CDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQ 140
C G C+ + NS + + +
Sbjct: 308 L--CSPGWQGLQCEREGIPRMTPKIVDLPDH-IEVNSGKFNPICKASGWPLPTNEEMTLV 364
Query: 141 GKNCERCLPGYYGDPTDGGTCYYQC 165
+ P + +
Sbjct: 365 KPDGTVLHPKDFNHTDHFSVAIFTI 389
Score = 27.7 bits (61), Expect = 7.4
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 305 CPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
C C C+C P G C+ E P + ++
Sbjct: 295 CNNGEMCDRFQGCLCSPGWQGLQCEREGIPRMTPKIVDLPDH 336
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 49.3 bits (117), Expect = 1e-06
Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 38 CIYGYCKGPPDYS---CQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQ 94
C G C+ P + CQCE G C+ C + C + C
Sbjct: 535 CFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQECP 594
Query: 95 YCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQ--GKNCERCLPGYY 152
C + + E + + G + C + ++ E C Y
Sbjct: 595 GCPSPCGKYISCAECLK-FEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYT 653
Query: 153 GDPTDGGTCY 162
+ DG Y
Sbjct: 654 LEQQDGMDRY 663
Score = 48.2 bits (114), Expect = 3e-06
Identities = 26/128 (20%), Positives = 35/128 (27%), Gaps = 14/128 (10%)
Query: 38 CIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCR 97
C G Y CE + +C + G C CH G CQ C
Sbjct: 497 CHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKC-RCHPGFEGSACQ-CE 554
Query: 98 AGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTD 157
+ G R+ +C+ G C C Q C+ C PG
Sbjct: 555 RTTEG----CLNPRRVECSGRGRCR-------CNVCECHSGYQLPLCQEC-PGCPSPCGK 602
Query: 158 GGTCYYQC 165
+C
Sbjct: 603 YISCAECL 610
Score = 45.1 bits (106), Expect = 3e-05
Identities = 22/115 (19%), Positives = 32/115 (27%), Gaps = 6/115 (5%)
Query: 49 YSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQE 108
Y C G T + C+ V + RA + + T +
Sbjct: 360 YDSFCSNGVTHRNQP-RGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ 418
Query: 109 GCRKCDCN-----SHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDG 158
+C+C + G G C C GKNCE G +G
Sbjct: 419 VLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEG 473
Score = 43.5 bits (102), Expect = 7e-05
Identities = 22/130 (16%), Positives = 34/130 (26%), Gaps = 28/130 (21%)
Query: 51 CQCELGWTGVDCSVNC-------------------LCNNHSTCVHGIGICDECHDWTTGD 91
C+C+ G+ G +C +C+ CV G +C
Sbjct: 448 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 507
Query: 92 HCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGY 151
+ QYC + E C G G+C C +G C+
Sbjct: 508 YGQYCECDTIN----CERYNGQVCGGPGR-----GLCFCGKCRCHPGFEGSACQCERTTE 558
Query: 152 YGDPTDGGTC 161
C
Sbjct: 559 GCLNPRRVEC 568
Score = 36.2 bits (83), Expect = 0.019
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQE-EICPNECHEFLNHGTC 345
+C C N C C P CQE CP+ C + +C
Sbjct: 563 PRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCG---KYISC 606
Score = 35.8 bits (82), Expect = 0.025
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 9/115 (7%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICD----ECHDWTT 89
+ + +C + S C HG G + C
Sbjct: 397 ECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLC-HGKGFLECGICRCDTGYI 455
Query: 90 GDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNC 144
G +C+ G QE C +++ G+ D + G+C+C +
Sbjct: 456 GKNCECQTQGRSS----QELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL 506
Score = 33.9 bits (77), Expect = 0.094
Identities = 12/52 (23%), Positives = 13/52 (25%), Gaps = 5/52 (9%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFL-----NHGTCD 346
P C +C C P G CQ E C G C
Sbjct: 524 GQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCR 575
Score = 33.1 bits (75), Expect = 0.17
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 301 CPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
C C C G +C+ + E D
Sbjct: 433 DRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 478
Score = 32.8 bits (74), Expect = 0.19
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 297 QIFSCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNEC--HEFLNHGTC 345
+ CP C + +C G +C CP + + TC
Sbjct: 592 ECPGCPSPCGKYISCAEC-LKFEKGPFGKNC-SAACPGLQLSNNPVKGRTC 640
Score = 30.8 bits (69), Expect = 0.82
Identities = 11/81 (13%), Positives = 19/81 (23%), Gaps = 7/81 (8%)
Query: 43 CKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYG 102
+ E G G +CS C S C E + C
Sbjct: 602 KYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKE----RDSEGCWVAYTLEQQ 657
Query: 103 NATTQEGCR---KCDCNSHGN 120
+ + +C + +
Sbjct: 658 DGMDRYLIYVDESRECVAGPD 678
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 45.8 bits (109), Expect = 1e-06
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 25/109 (22%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLRLQPDINVPCNENAVYIYDGLPDFVTSVGGTHQS 254
P EC+W + P +L+ + P +N+ C + V + +G P S
Sbjct: 23 PKTECVWTL-------QVDPKYKLLVSI-PTLNLTCGKEYVEVLEGAPG----------S 64
Query: 255 TTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSC 301
+LG FC G +L S MT+ YK G P+ + + S
Sbjct: 65 KSLGKFCE-----GLSILNRGSSGMTVKYKRDSGHPASPYEIIFLRDSQ 108
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 49.1 bits (116), Expect = 1e-06
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 68 CNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCD 127
+ + + + D Y + + +C CN H V D
Sbjct: 259 VTDLRIRLLRPAVGEIFVDELHLARYFYA-------ISDIKVRGRCKCNLHATVC--VYD 309
Query: 128 SITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
+ C C+ NT G +C +C Y G P G+
Sbjct: 310 NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343
Score = 48.7 bits (115), Expect = 2e-06
Identities = 23/114 (20%), Positives = 32/114 (28%), Gaps = 23/114 (20%)
Query: 56 GWTGVDCSVNCLCNNH-STCVHGIGICD-ECHDWTTGDHCQYCRAGSYGN---------- 103
+ + C CN H + CV+ EC TTG C C+ G
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPI 346
Query: 104 -ATTQEGCRKCDCNSHGNSVL---------GVCDSITGECICQDNTQGKNCERC 147
C + N G C + C+C G CE+
Sbjct: 347 PKGAANACIPSISSIGTNVCDNELLHCQNGGTCHN-NVRCLCPAAYTGILCEKL 399
Score = 43.3 bits (101), Expect = 8e-05
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 28/108 (25%)
Query: 41 GYCKGPPDYSCQCELGWTGVDCSVN----CLCNNHSTCVHGIGICDECHDWTTGDHCQYC 96
Y P + C + + +V C N TC + + C TG C+
Sbjct: 342 SYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNV--RCLCPAAYTGILCE-- 397
Query: 97 RAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNC 144
K C G+ C S +G+ T +
Sbjct: 398 ---------------KLRCEEAGS-----CGSDSGQGAPPHGTHHHHH 425
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 43.9 bits (104), Expect = 5e-06
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 24/109 (22%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLRLQPDINVPCNENAVYIYDGLPDFVTSVGGTHQS 254
C W I P + + + P +N+ C + V ++DGL
Sbjct: 26 QKNLCTWTI-------LMKPDQKVRMAI-PYLNLACGKEYVEVFDGLLS----------G 67
Query: 255 TTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSC 301
+ G C V + + MTI Y G S F + S
Sbjct: 68 PSYGKLCA----GAAIVFLSTANTMTIKYNRISGNSSSPFLIYFYGSSP 112
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 47.0 bits (111), Expect = 7e-06
Identities = 24/132 (18%), Positives = 36/132 (27%), Gaps = 19/132 (14%)
Query: 38 CIYGYCKGPPDYS---CQCELGWTGVDCSVNCLCNNHSTCVHGIGICD----ECHDWTTG 90
G C+ P + C+C C G C CH G
Sbjct: 455 FECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFG 514
Query: 91 DHC-QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLP 149
+YC + + C+ H G C G+C+C + G C
Sbjct: 515 KITGKYCECDDFS----CVRYKGEMCSGH-----GQCS--CGDCLCDSDWTGYYCNCTTR 563
Query: 150 GYYGDPTDGGTC 161
++G C
Sbjct: 564 TDTCMSSNGLLC 575
Score = 44.3 bits (104), Expect = 5e-05
Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 9/109 (8%)
Query: 38 CIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCR 97
+ C C S C N + T G+ C G C+ C
Sbjct: 420 GFKDSLIVQVTFDCDCACQAQAEPNSHRC-NNGNGTFECGVCRCGPGW---LGSQCE-CS 474
Query: 98 AGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCER 146
Y +C + + G+C+C + GK +
Sbjct: 475 EEDYR----PSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGK 519
Score = 42.0 bits (98), Expect = 2e-04
Identities = 30/145 (20%), Positives = 41/145 (28%), Gaps = 20/145 (13%)
Query: 36 NKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQ- 94
+C+ CE +C+ H C G +CD TG +C
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDW---TGYYCNC 560
Query: 95 YCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSI----TGE-----CICQDN-TQGKNC 144
R + ++ C+ G G C I G+ C D T K C
Sbjct: 561 TTRTDTCMSSNG------LLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKEC 614
Query: 145 ERCLPGYYGDPTDGGTCYYQCMARG 169
C G D TC C
Sbjct: 615 VECKKFDRGALHDENTCNRYCRDEI 639
Score = 39.7 bits (92), Expect = 0.002
Identities = 26/133 (19%), Positives = 34/133 (25%), Gaps = 29/133 (21%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
KC G C + G G C C + T C EC + G
Sbjct: 577 GRGKCECGSC-------VCIQPGSYGDTCEKCPTCPDACTFK---KECVECKKFDRGALH 626
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPG--Y 151
E C SV + D+ C KN + C+ Y
Sbjct: 627 -------------DENTCNRYCRDEIESVKELKDTGKDAVNC----TYKNEDDCVVRFQY 669
Query: 152 YGDPTDGGTCYYQ 164
Y D + Y
Sbjct: 670 YEDSSGKSILYVV 682
Score = 35.8 bits (82), Expect = 0.021
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEF-----LNHGTCD 346
+ C + C C+C TG C + C G C+
Sbjct: 531 YKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCE 582
Score = 34.3 bits (78), Expect = 0.063
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 297 QIFSCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
+ +CPD C + C C G E C C + +
Sbjct: 600 KCPTCPDACTFKKEC----VECKKFDRGALHDENTCNRYCRDEIESVKE 644
Score = 32.0 bits (72), Expect = 0.36
Identities = 16/108 (14%), Positives = 27/108 (25%), Gaps = 16/108 (14%)
Query: 61 DCSVNCLCNNHSTCVHG-------IGICDECHDWTTGDHCQYC-RAGSYGNATTQEGCRK 112
C N + +C+ I + + + + ++ +
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 113 CDCNSHGNSVL-------GVCDSITGECICQDNTQGKNCERCLPGYYG 153
CDC + G G C C G CE C Y
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE-CSEEDYR 479
Score = 31.2 bits (70), Expect = 0.57
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFL--------NHGTCD 346
C + C+ QCVC G + C + + HG C
Sbjct: 490 EGQPVCSQRGECLCGQCVCHSSDFGKITGKY-CECDDFSCVRYKGEMCSGHGQCS 543
Score = 30.8 bits (69), Expect = 0.80
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 300 SCPDKCPENRTCINNQCVC-PPRRTGPDCQE-EICPNECHEFLNHGTC 345
S C C CVC P G C++ CP+ C C
Sbjct: 570 SNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACT---FKKEC 614
Score = 28.5 bits (63), Expect = 4.3
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
+ N T C C P G C+ C E + C
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCE---CSEEDYRPSQQDECS 487
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 41.2 bits (97), Expect = 6e-05
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLRLQPDINVPCNENAVYIYDGLPDFVTSVGGTHQS 254
P C+W I P + + +Q + + CN+ ++ I DGLP S
Sbjct: 27 PKTNCVWTI-------QMPPEYHVRVSIQ-YLQLNCNKESLEIIDGLPG----------S 68
Query: 255 TTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQ 297
LG C + + +MT+ Y P+ + Y
Sbjct: 69 PVLGKICEGSL----MDYRSSGSIMTVKYIREPEHPASFYEVLYF 109
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 42.0 bits (99), Expect = 8e-05
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 28/118 (23%)
Query: 38 CIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDE-----CHDWTTGDH 92
+G +G + C+ + G C+ C + G CD+ C + G
Sbjct: 8 HHHGSIEGR--SAVTCDDYYYGFGCNKFCRPRD---DFFGHYACDQNGNKTCMEGWMGPE 62
Query: 93 CQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPG 150
C + C + G C G+C CQ QG C++C+P
Sbjct: 63 CN-----------------RAICRQGCSPKHGSCKL-PGDCRCQYGWQGLYCDKCIPH 102
Score = 33.9 bits (78), Expect = 0.036
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 24/115 (20%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICD---ECHDWTTG 90
+G+ + + C GW G +C+ +C + HG C G
Sbjct: 35 RPRDDFFGHYACDQNGNKTCMEGWMGPECNRA-ICRQGCSPKHGSCKLPGDCRCQYGWQG 93
Query: 91 DHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE 145
+C C H V G+C+ +C+C+ N G+ C+
Sbjct: 94 LYCD-------------------KCIPHPGCVHGICNE-PWQCLCETNWGGQLCD 128
Score = 33.9 bits (78), Expect = 0.039
Identities = 12/47 (25%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
D N C GP+C IC C HG+C
Sbjct: 36 PRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCS--PKHGSCK 80
Score = 31.6 bits (72), Expect = 0.23
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 3/47 (6%)
Query: 301 CPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
+ + + C G C + P + H CD
Sbjct: 3 GSHHHHHHGSIEGRSAVTCDDYYYGFGCNKFCRPRDDF--FGHYACD 47
Score = 28.9 bits (65), Expect = 1.6
Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 48 DYSCQCELGWTGVDCS--VNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNAT 105
C+C+ GW G+ C + H C C C G C
Sbjct: 82 PGDCRCQYGWQGLYCDKCIPHPGCVHGICNEP-WQC-LCETNWGGQLCDKD--------- 130
Query: 106 TQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE 145
C + G D C C + G NCE
Sbjct: 131 LNYCGTHQPCLNGGTCSNTGPDKYQ--CSCPEGYSGPNCE 168
Score = 27.3 bits (61), Expect = 5.6
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 305 CPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEF-LNHGTC 345
+ C QC+C G C +++ H+ LN GTC
Sbjct: 104 GCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTC 146
Score = 26.9 bits (60), Expect = 8.8
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 301 CPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
P++ +C C C G C + I C HG C+
Sbjct: 69 RQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGC----VHGICN 111
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 42.5 bits (100), Expect = 1e-04
Identities = 26/137 (18%), Positives = 37/137 (27%), Gaps = 28/137 (20%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNC---LCNNHSTCVHGIGICDECHDWTTG 90
+ + + C C N C IC+ C D G
Sbjct: 118 AFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCRNGGFCNER-RICE-CPDGFHG 175
Query: 91 DHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPG 150
HC+ C + G V G CIC G NC++
Sbjct: 176 PHCEKA-------------LCTPRCMNGGLCV------TPGFCICPPGFYGVNCDKANCS 216
Query: 151 YYGDPTDGGTCY--YQC 165
+GGTC+ +C
Sbjct: 217 --TTCFNGGTCFYPGKC 231
Score = 42.1 bits (99), Expect = 2e-04
Identities = 38/166 (22%), Positives = 47/166 (28%), Gaps = 47/166 (28%)
Query: 34 CYNKCI-YGYCKGPPDYSCQCELGWTGVDCSVNCL---CNNHSTCVHGIGICDECHDWTT 89
C C G+C C+C G+ G C C N CV G C C
Sbjct: 151 CPGGCRNGGFCNER--RICECPDGFHGPHCEKALCTPRCMNGGLCVTP-GFC-ICPPGFY 206
Query: 90 GDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE---- 145
G +C C + G C G+CIC +G+ CE
Sbjct: 207 GVNCDKA-------------NCSTTCFNG-----GTCFY-PGKCICPPGLEGEQCEISKC 247
Query: 146 ----------------RCLPGYYGDPTDGGTCYYQCMARGMLTGPG 175
+C GY GD C C A G P
Sbjct: 248 PQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCGAHGTCHEPN 293
Score = 41.0 bits (96), Expect = 3e-04
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 35/138 (25%)
Query: 33 LCYNKCI-YGYCKGPPDYSCQCELGWTGVDCSVNCL---CNNHSTCVHGIGICDECHDWT 88
LC +C+ G C P C C G+ GV+C C N TC + G C C
Sbjct: 182 LCTPRCMNGGLCVTP--GFCICPPGFYGVNCDKANCSTTCFNGGTCFYP-GKC-ICPPGL 237
Query: 89 TGDHCQY--------------------CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDS 128
G+ C+ C G G+ ++ C + C +H G C
Sbjct: 238 EGEQCEISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVC-EPGCGAH-----GTCHE 291
Query: 129 ITGECICQDNTQGKNCER 146
+C CQ+ G++C +
Sbjct: 292 -PNKCQCQEGWHGRHCNK 308
Score = 41.0 bits (96), Expect = 4e-04
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 297 QIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
+I CP C CI ++C C G C + +C C HGTC
Sbjct: 243 EISKCPQPCRNGGKCIGKSKCKCSKGYQGDLCSKPVCEPGCG---AHGTC 289
Score = 40.6 bits (95), Expect = 5e-04
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 297 QIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
+C C TC +C+CPP G C+ CP C N G C
Sbjct: 211 DKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCR---NGGKC 257
Score = 38.3 bits (89), Expect = 0.003
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 297 QIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
+ C +C C+ C+CPP G +C + C C N GTC
Sbjct: 179 EKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCF---NGGTC 225
Score = 37.1 bits (86), Expect = 0.006
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 297 QIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
Q CP C C C CP GP C++ +C C +N G C
Sbjct: 147 QQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRC---MNGGLC 193
Score = 33.7 bits (77), Expect = 0.086
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 297 QIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECHEFLNHG 343
C C + TC N+C C G C + + +H
Sbjct: 275 SKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
Score = 32.5 bits (74), Expect = 0.18
Identities = 23/149 (15%), Positives = 38/149 (25%), Gaps = 13/149 (8%)
Query: 19 SRCTVLLLYIFNASLCYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGI 78
+ Y F + +K I + + V C V
Sbjct: 62 AAGQAEYFYEFLSLRSLDKGIMADPT--VNVPLLGTVPHKASVVQVGFPCLGKQDGVAAF 119
Query: 79 GICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDN 138
+ + + + + Q C C + G C+ C C D
Sbjct: 120 EVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPG-GCRNG-----GFCNE-RRICECPDG 172
Query: 139 TQGKNCERCLPGYYGDPTDGGTC--YYQC 165
G +CE+ L +GG C C
Sbjct: 173 FHGPHCEKALC--TPRCMNGGLCVTPGFC 199
Score = 32.1 bits (73), Expect = 0.24
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 288 PSEGFNATYQIFSCPDKCPENRTCINN----QCVCPPRRTGPDCQEEICPNECHEFLNHG 343
GF + + + CQ+ CP C N G
Sbjct: 103 VQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECPGGCR---NGG 159
Query: 344 TCD 346
C+
Sbjct: 160 FCN 162
Score = 30.6 bits (69), Expect = 0.72
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 34 CYNKCIY-GYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIG 79
C C G C P CQC+ GW G C+ + T H
Sbjct: 279 CEPGCGAHGTCHEP--NKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 38.9 bits (90), Expect = 4e-04
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 90 GDHCQYCRAGSYG------NATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKN 143
+C G + K C+ +C +T +C C+ N
Sbjct: 31 VRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNKCDCK---IDIN 87
Query: 144 CERCLPGYYGDPTDG 158
C + P G
Sbjct: 88 CRKTCPNGLKRDKLG 102
Score = 38.1 bits (88), Expect = 8e-04
Identities = 11/54 (20%), Positives = 13/54 (24%), Gaps = 3/54 (5%)
Query: 108 EGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
E C G C+ IT C C C G+ C
Sbjct: 1 EDPFGPGCEEAGCPEGSACNIITDRCTCSGVRC---RVHCPHGFQRSRYGCEFC 51
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 40.8 bits (94), Expect = 5e-04
Identities = 16/80 (20%), Positives = 23/80 (28%)
Query: 282 HYKQGKPSEGFNATYQIFSCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLN 341
++ P G + Y CP C + CI+ C C T E +
Sbjct: 175 SSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFD 234
Query: 342 HGTCDLLLTGVHITHGRTLH 361
L IT G+
Sbjct: 235 RFEGKLSPLWYKITGGQVGT 254
Score = 32.7 bits (73), Expect = 0.19
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 4/104 (3%)
Query: 50 SCQCELGWTGVDCSVNCL----CNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNAT 105
S + + ++ C+ H C+ G+ CD + G S
Sbjct: 176 SQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHSEMFDR 235
Query: 106 TQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLP 149
+ G V C ++ N GK R +P
Sbjct: 236 FEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVP 279
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 40.0 bits (93), Expect = 0.001
Identities = 32/200 (16%), Positives = 63/200 (31%), Gaps = 34/200 (17%)
Query: 144 CERCLPGYYGDPTDGGTCYYQCMARGMLTGPGPQGLGSGLAERNAWEGKDTPSRECLWII 203
C + GYY G + + +G+ + S ECL+ I
Sbjct: 138 CHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTI 197
Query: 204 GQSLDSNSTAPADIILLR------LQPDINVPCNENAVYIYDGLPDFVTSVGGTHQSTTL 257
++ L+ ++ VPC + + I G L
Sbjct: 198 -------ELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG-------------PKVL 237
Query: 258 GVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSCPDKCPENRTCINNQ 315
G FC E E + +S + I + + G+ +Y+ + ++CPE + ++ +
Sbjct: 238 GPFCGEKAP---EPISTQSHSVLILFHSDNSGENRGWRLSYR--AAGNECPELQPPVHGK 292
Query: 316 CVCPPRRTGPDCQEEI-CPN 334
+ Q + C
Sbjct: 293 IEPSQAKYFFKDQVLVSCDT 312
Score = 31.5 bits (71), Expect = 0.43
Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 24/166 (14%)
Query: 195 PSRECLWIIGQSLDSNSTAPAD-IILLRLQPDINVPCNENAVYIYDGLPDFVTSVGGTHQ 253
E W I T P I L N+ + Y Y +
Sbjct: 23 SDSEVTWNI--------TVPDGFRIKLYFM-HFNLESSYLCEYDYVKVET-----EDQVL 68
Query: 254 STTLGVFCTEDMHR-GYEVLEAKSGVMTIH----YKQGKPSEGFNATYQ---IFSCPDKC 305
+T G T+ G EV+ + M+I + + GF+A Y + C ++
Sbjct: 69 ATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKERE 128
Query: 306 PENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCDLLLTG 351
E +C ++ C C+ + + D L T
Sbjct: 129 DEELSC-DHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQ 173
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 38.0 bits (87), Expect = 0.002
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 292 FNATYQIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQEEICPNECH 337
F T Q CP C C C CP GP C+ + H
Sbjct: 142 FFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEGTKHHHHHH 188
Score = 30.7 bits (68), Expect = 0.52
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 7/88 (7%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGN 120
V C V D + G+ + T Q+ C + G
Sbjct: 102 VVQVGFPCLGXQDGVA-AFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGG- 159
Query: 121 SVLGVCDSITGECICQDNTQGKNCERCL 148
C+ C C D G +CE
Sbjct: 160 ----FCNE-RRICECPDGFHGPHCEGTK 182
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 37.7 bits (86), Expect = 0.007
Identities = 12/65 (18%), Positives = 18/65 (27%)
Query: 282 HYKQGKPSEGFNATYQIFSCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLN 341
+ + + Y C D C + C+ CVC + G C E N
Sbjct: 518 APFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLPTQLKDN 577
Query: 342 HGTCD 346
Sbjct: 578 FNRAP 582
Score = 30.8 bits (68), Expect = 0.95
Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 22/101 (21%)
Query: 48 DYSCQCELGWTGVDCSVNCLC----NNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGN 103
+ W + + C + H CV G +CDE W G +C
Sbjct: 517 PAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDE--QW-GGLYCD--------- 564
Query: 104 ATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNC 144
+ + S C
Sbjct: 565 ------EPETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVC 599
Score = 30.0 bits (66), Expect = 1.3
Identities = 15/115 (13%), Positives = 26/115 (22%), Gaps = 9/115 (7%)
Query: 50 SCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRA-GSYGNATTQE 108
SC C+ W G+ C + + +W T + G+ +
Sbjct: 551 SCVCDEQWGGLYCDEP-ETSLPTQLKDNFNRAPSNQNWLTVSGGKLSTVCGAVASGLALH 609
Query: 109 GCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPG---YYGDPTDGGT 160
C + + E I G +GG
Sbjct: 610 FSGGCSRLLVTVDL----NLTNAEFIQFYFMYGCLITPSNRNQGVLLEYSVNGGI 660
Score = 28.1 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 291 GFNATYQIFSCPDKCPENRTCIN-NQCVCPPRRTGPDCQ 328
+ Y C + C + +CIN +C+C P +GP C+
Sbjct: 178 AIDNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCK 216
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 35.8 bits (83), Expect = 0.007
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 32/113 (28%)
Query: 49 YSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQE 108
+ C+C T C+ TC +
Sbjct: 24 FICECSSESTLDPTKTICIETIKGTCWQTV------------------------------ 53
Query: 109 GCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
+C+ N +G ++ C S G T + C GY G C
Sbjct: 54 IDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI--KGTQC 104
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 35.7 bits (82), Expect = 0.013
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 28/114 (24%)
Query: 51 CQCELGWTGVDCSVNC-------------------LCNNHSTCVHGIGICDECHDWTTGD 91
C+C+ G+ G +C +C+ CV G +C
Sbjct: 109 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 168
Query: 92 HCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCE 145
+ QYC + E C G G+C C +G C+
Sbjct: 169 YGQYCECDTI----NCERYNGQVCGGPGR-----GLCFCGKCRCHPGFEGSACQ 213
Score = 31.1 bits (70), Expect = 0.48
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 12/102 (11%)
Query: 48 DYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQ 107
C+C LC+ GI CD + G +C+ C+ + +
Sbjct: 81 LPQCECR---CRDQSRDRSLCHGKGFLECGICRCDTGY---IGKNCE-CQTQGRSSQELE 133
Query: 108 EGCRK----CDCNSHGNSVLGVCDSITGECICQDNTQGKNCE 145
CRK C+ G+ V G C T + G+ CE
Sbjct: 134 GSCRKDNNSIICSGLGDCVCGQCLCHTSDV-PGKLIYGQYCE 174
Score = 26.9 bits (59), Expect = 9.2
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 301 CPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
C C C G +C+ + E D
Sbjct: 94 DRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKD 139
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 35.6 bits (82), Expect = 0.024
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 30/132 (22%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLR-----LQPDINVPCNENAVYIYDGLPDFVTSVG 249
C W I P +I L L+ N C + + +YD
Sbjct: 23 HGINCTWHI-------LVQPNHLIHLMFETFHLEFHYN--CTNDYLEVYDT--------- 64
Query: 250 GTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSCPDKCPE 307
T+LG +C + + L + + + + EGF Y+ S C +
Sbjct: 65 --DSETSLGRYCGKSIPP---SLTSSGNSLMLVFVTDSDLAYEGFLINYEAISAATACLQ 119
Query: 308 NRTCINNQCVCP 319
+ T P
Sbjct: 120 DYTDDLGTFTSP 131
Score = 34.9 bits (80), Expect = 0.038
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 28/132 (21%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLR-----LQPDINVPCNENAVYIYDGLPDFVTSVG 249
S EC W + ++ L L+ N C + + +YDG
Sbjct: 256 HSSECYWWL-------KSSHGSAFELEFKDFHLEHHPN--CTLDYLAVYDG--------- 297
Query: 250 GTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSCPDKCPE 307
+ S L C ++ ++ + M I + +G+ GF A Y+
Sbjct: 298 PSSNSHLLTQLCGDEKP---PLIRSSGDSMFIKLRTDEGQQGRGFKAEYRQTCENVVIVN 354
Query: 308 NRTCINNQCVCP 319
I P
Sbjct: 355 QTYGILESIGYP 366
Score = 33.3 bits (76), Expect = 0.13
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLRLQPDINVPCNENAVYIYDGLPDFVTSVGGTHQS 254
++ C W I + +T + L+ IN C+ + + +YDG
Sbjct: 371 ENQHCNWTI--RATTGNTVNYTFLAFDLEHHIN--CSTDYLELYDG-------------P 413
Query: 255 TTLGVFCTEDMHRGYEVLEAKSGVMTIHYK---QGKPSEGFNATYQI 298
+G +C D+ S + + G+ +GF + +
Sbjct: 414 RQMGRYCGVDLP---PPGSTTSSKLQVLLLTDGVGRREKGFQMQWFV 457
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 33.7 bits (78), Expect = 0.034
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
Query: 48 DYSCQCELGWTGVDCSVN---CL---CNNHSTCVHGIG--ICDECHDWTTGDHCQ 94
++ C C G+ GV C VN C C ++ C+ I C EC TG CQ
Sbjct: 65 EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQC-ECPTGFTGHLCQ 118
Score = 33.0 bits (76), Expect = 0.055
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 49 YSCQCELGWTGVDCSVN---CL---CNNHSTCVHGIG--ICDECHDWTTGDHCQ 94
+ CQC G+TG C ++ C+ C N +TC+ IG C C G HC+
Sbjct: 28 FECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCI-CMPGYEGVHCE 80
Score = 29.9 bits (68), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 48 DYSCQCELGWTGVDCSVN--------CLCNNH 71
++ C+C G+TG C V+ + NH
Sbjct: 103 EFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134
Score = 27.2 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 302 PDKCPENRTCINN----QCVCPPRRTGPDCQEEICPNECHEF--LNHGTC 345
+ C + TC++ QC+C P G C+ +EC L++G C
Sbjct: 50 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNT--DECASSPCLHNGRC 97
Score = 27.2 bits (61), Expect = 5.8
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 305 CPENRTCINN----QCVCPPRRTGPDCQEEICPNECHEF--LNHGTC 345
C CIN +C C TGP C+ ++ NEC N TC
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDV--NECVSNPCQNDATC 59
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.9 bits (79), Expect = 0.043
Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 17/136 (12%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
C ++C+ + C NH C + C E D
Sbjct: 26 CASRCLSLQITR------ISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQ 79
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYG 153
+C + C + + + G+C + G C+
Sbjct: 80 SFCEPLFPKKSYE--------CLTSCEFLKYILLVKQGDCPAPEKASG-FAAACVESCEV 130
Query: 154 DPTDGGTCYYQCMARG 169
D G +C + G
Sbjct: 131 DNECSG--VKKCCSNG 144
Score = 28.4 bits (62), Expect = 5.1
Identities = 12/84 (14%), Positives = 17/84 (20%), Gaps = 9/84 (10%)
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNC-ERCLPGYY 152
S Q C +H C C + + C C P +
Sbjct: 33 LQITRISAFFQHFQNNGSLVWCQNHKQ-----CSKCLEPCKESGDLRKHQCQSFCEPLF- 86
Query: 153 GDPTDGGTCYYQCMARGMLTGPGP 176
P C C +
Sbjct: 87 --PKKSYECLTSCEFLKYILLVKQ 108
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 34.3 bits (79), Expect = 0.055
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 36 NKCIY-GYCK-GPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDE-CHDWTTGDH 92
C++ G C+ Y+C C G+ G NC + C C
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYEG----SNCELAKNECHPERTDGCQHFCLPGQESYT 66
Query: 93 CQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGEC 133
C C G Y + C D + G +
Sbjct: 67 CS-CAQG-YRLGEDHKQCVPHDQCACGVLTSEKRAPDLQDL 105
Score = 29.3 bits (66), Expect = 2.0
Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 12/101 (11%)
Query: 62 CSVNCLCNNHSTCVHGIG--ICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHG 119
C C ++ +C I C C G +C+ + N E C
Sbjct: 8 CISQ-PCLHNGSCQDSIWGYTCT-CSPGYEGSNCELAK-----NECHPERTDGCQHFCLP 60
Query: 120 NSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGT 160
C G + +D K C G T
Sbjct: 61 GQESYTCSCAQGYRLGED---HKQCVPHDQCACGVLTSEKR 98
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 34.1 bits (78), Expect = 0.058
Identities = 29/173 (16%), Positives = 49/173 (28%), Gaps = 49/173 (28%)
Query: 138 NTQGKNCERCLPGYYGDPTDGGTCYYQC-----MARGMLTGPGPQGLGSGLAERNAWEGK 192
N G C GY + G++T P +
Sbjct: 140 NYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPD-------------FPNP 186
Query: 193 DTPSRECLWIIGQSLDSNSTAPADIILLR------LQPDINVPCNENAVYIYDGLPDFVT 246
S ECL+ I ++ L+ ++ VPC + + I G
Sbjct: 187 YPKSSECLYTI-------ELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVG------ 233
Query: 247 SVGGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQ 297
LG FC E E + +S + I + + G+ +Y+
Sbjct: 234 -------PKVLGPFCGEKAP---EPISTQSHSVLILFHSDNSGENRGWRLSYR 276
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 32.7 bits (75), Expect = 0.081
Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 31/132 (23%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLR-----LQPDINVPCNENAVYIYDGLPDFVTSVG 249
++ C W I I L L+ D C + V IYD
Sbjct: 29 DNQICYWHI-------RLKYGQRIHLSFLDFDLEDDPG--CLADYVEIYDS--------- 70
Query: 250 GTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSCPDKCPE 307
+G +C +++ + + + VMT+ + + GF Y D +
Sbjct: 71 YDDVHGFVGRYCGDEL---PDDIISTGNVMTLKFLSDASVTAGGFQIKYVAM---DPVSK 124
Query: 308 NRTCINNQCVCP 319
+ N
Sbjct: 125 SSQGKNTSTTST 136
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 34.2 bits (78), Expect = 0.082
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 28/119 (23%)
Query: 195 PSRECLWIIGQSLDSNSTAPAD--IILLRLQPDINVP---CNENAVYIYDGLPDFVTSVG 249
+ C WI+ AP I+L P + C + + I D G
Sbjct: 29 SHQNCEWIV--------YAPEPNQKIVLNFNPHFEIEKHDCKYDFIEIRD---------G 71
Query: 250 GTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIF-SCPDKC 305
+ + LG C + + ++ I + + GF+ Y+IF + + C
Sbjct: 72 DSESADLLGKHCGNIAP---PTIISSGSMLYIKFTSDYARQGAGFSLRYEIFKTGSEDC 127
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 33.8 bits (77), Expect = 0.084
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 7/134 (5%)
Query: 38 CIYGYCKGPPDYSCQCELGWTGVDCSVNC------LCNNHSTCVHGIGICDECHDWTTGD 91
CIY P Y C+C+ G+ G N + C +
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLP 177
Query: 92 HCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGY 151
+ G + D + + + + + G C+ C +
Sbjct: 178 NSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN-PRQADYDKDEVGDRCDNCPYVH 236
Query: 152 YGDPTDGGTCYYQC 165
D
Sbjct: 237 NPAQIDTDNNGEGD 250
Score = 30.0 bits (67), Expect = 1.3
Identities = 26/130 (20%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 46 PPDYSCQ-CELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTT------GDHCQYCRA 98
+SC C +G+ G C + C IC G HC C
Sbjct: 22 DGSWSCGFCPVGFLGNGTH----CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPP 77
Query: 99 GSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGEC----ICQDN---TQGKNCERCLPGY 151
GN G C T C C + C GY
Sbjct: 78 RYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGY 137
Query: 152 YGDPTDGGTC 161
GD G
Sbjct: 138 AGDGLICGED 147
Score = 30.0 bits (67), Expect = 1.4
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 83 ECHDWTTGD-HCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQG 141
+C + G C +C G GN T E +C C S + C + G
Sbjct: 16 QCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDI------CFSTSKVPRCVNTQPG 69
Query: 142 KNCERCLPGYYGDPTDGGTCYY 163
+C C P Y G+ G
Sbjct: 70 FHCLPCPPRYRGNQPVGVGLEA 91
Score = 28.4 bits (63), Expect = 4.8
Identities = 22/119 (18%), Positives = 31/119 (26%), Gaps = 12/119 (10%)
Query: 43 CKGPPDYSCQCELGWTGVDCSVNC--LCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGS 100
G P+ + C T NC L N+ GI D C D D +
Sbjct: 150 LDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGV------T 203
Query: 101 YGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGG 159
Q + + V CD+ C N + + G G
Sbjct: 204 DEKDNCQLLFNPRQADYDKDEVGDRCDN----CPYVHNPAQIDTDNNGEGDACSVDIDG 258
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 34.1 bits (78), Expect = 0.085
Identities = 13/115 (11%), Positives = 25/115 (21%), Gaps = 12/115 (10%)
Query: 36 NKCIYGY-CKG-PPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
+K + G+ + C + C + T C
Sbjct: 272 SKALSGFSLQSCRHSIPVFCHSSFYHDTDF--LGEELDIVAAKSHEACQK--LCTNAVRC 327
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHG-NSVLGVCDSITGECICQDNTQGKNCERC 147
Q+ + Q C + + S G I + C+
Sbjct: 328 QF-----FTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMD 377
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 32.3 bits (74), Expect = 0.11
Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 41 GYCK-GPPDYSCQCELGWTGVDCSVNCL------CNNHSTCVHGIG--ICDECHDWTTGD 91
G CK Y C C++G+ G +C ++ +C C
Sbjct: 60 GLCKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLC-SCTTGYRLA 118
Query: 92 HCQ 94
Q
Sbjct: 119 PDQ 121
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 8/47 (17%)
Query: 36 NKCIYGYCKGPPD--YSCQCELGWTGVDCSVNCL------CNNHSTC 74
N +CK D C C G+ +C C S
Sbjct: 92 NGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSVS 138
Score = 28.1 bits (63), Expect = 2.5
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 8/51 (15%)
Query: 302 PDKCPENRTCINN----QCVCPPRRTGPDCQEEICPNECHE--FLNHGTCD 346
P+ C C ++ +C C G +C+ + +
Sbjct: 53 PNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA--TCNIKNGRCKQFCKT 101
Score = 27.3 bits (61), Expect = 5.1
Identities = 16/104 (15%), Positives = 26/104 (25%), Gaps = 22/104 (21%)
Query: 51 CQCELGWTGVDCSVN---CL---CNNHSTCVHGIG--ICDECHDWTTGDHCQYCRAGSYG 102
E V+ C C N C I C C G +C+ +
Sbjct: 33 ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYEC-WCQVGFEGKNCELDATCNIK 91
Query: 103 NATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCER 146
N ++ C + V C C + ++
Sbjct: 92 NGRCKQFC----KTGADSKV---------LCSCTTGYRLAPDQK 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.11
Identities = 35/245 (14%), Positives = 64/245 (26%), Gaps = 102/245 (41%)
Query: 175 GPQGLGSGL-------AERNAWEGKDTPSRECL-WII-------------------GQSL 207
G Q G G+ A ++ W D ++ + I G+ +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 208 DSN-------STAPADIILLRLQPDINVPCNENAVYIYDGLPD-------------FVTS 247
N + + ++ +IN Y + +
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTS---YTFRS-EKGLLSATQFTQPALTLME 1740
Query: 248 V---------GGT--------HQSTTLGVFCTEDMHRGYEVLEAKSGVMTIH------YK 284
G H S LG E Y L + + VM+I +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGH-S--LG----E-----YAALASLADVMSIESLVEVVFY 1788
Query: 285 QGK------P-SEGFNATYQIFSC-PDKCPE--NRTCINNQCVCPPRRTGPDCQEEI--- 331
+G P E + Y + + P + ++ + +RTG EI
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVNY 1846
Query: 332 -CPNE 335
N+
Sbjct: 1847 NVENQ 1851
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 32.9 bits (74), Expect = 0.16
Identities = 20/108 (18%), Positives = 24/108 (22%), Gaps = 8/108 (7%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCR---KCDCNS 117
N + N IC T T C+ C S
Sbjct: 139 SVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKS 198
Query: 118 HGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
HG + G+C C C C Y G C C
Sbjct: 199 HGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYL-----DGRCVETC 241
Score = 30.2 bits (67), Expect = 1.4
Identities = 24/153 (15%), Positives = 34/153 (22%), Gaps = 18/153 (11%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
N C C C+ LC HS C+ D+ C
Sbjct: 173 VINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCC-HSECLGNCSQPDDPTK------C 225
Query: 94 QYCRAGSYGNA--------TTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNC- 144
CR +C S + C + + Q C
Sbjct: 226 VACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCI 285
Query: 145 ERCLPGYYGDPTDGG--TCYYQCMARGMLTGPG 175
C GY + ++ C C L
Sbjct: 286 PECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGE 318
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 31.9 bits (71), Expect = 0.20
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 49 YSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQE 108
Y C C G+T + + + C E C C G N +
Sbjct: 74 YXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCS-CAIGXVPNPEDEX 132
Query: 109 GCR---KCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
C + C N+ VC ++ G CQ C+ G+ D + C
Sbjct: 133 XCTXTGETACQLXCNTDNEVCXNVEGVYXCQ----------CMEGFTFD-XEXNVC 177
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 31.1 bits (71), Expect = 0.22
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 41 GYCK-GPPDYSCQCELGWTGVDCSVNCL-------CNNHSTCVHGIG--ICDECHDWTTG 90
G CK G +Y+C C G+ G +C + + C +C C T
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVC-SCARGYTL 112
Query: 91 DHCQ 94
Sbjct: 113 ADNG 116
Score = 29.2 bits (66), Expect = 1.2
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 41 GYCK-GPPDYSCQCELGWTGVDCSVNCL------CNNHSTC 74
+C C C G+T D C+ C +
Sbjct: 93 QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 48 DYSCQCELGWTGVDCSVN---CL---CNNHSTCVHGIG--ICDECHDWTTGDHCQ 94
+ + + + C C N C G+G C C + G +C+
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTC-TCLEGFEGKNCE 77
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 32.3 bits (73), Expect = 0.23
Identities = 22/195 (11%), Positives = 51/195 (26%), Gaps = 39/195 (20%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLRLQ---------PDINVPCNENAVYIYDGLPDFV 245
S EC +I+ I+L + P + C + + I+D
Sbjct: 33 NSLECTYIV-------FAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD------ 79
Query: 246 TSVGGTHQSTTLGVFCTEDMHRGYEV---LEAKSGVMTIHYKQGKPSEGFNATYQIFSCP 302
G +G +C G + + + SG++++ + FS
Sbjct: 80 ---GFPDVGPHIGRYC------GQKTPGRIRSSSGILSMVFYTDSAIAKEG-----FSAN 125
Query: 303 DKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCDLLLTGVHITHGRTLHY 362
++ + +C+ + + N L
Sbjct: 126 YSVLQSSVSEDFKCMEALGMESGEIHSDQITASSQYSTNWSAERSRLNYPENGWTPGEDS 185
Query: 363 QVDLIRCTCRQVYLI 377
+ I+ + +
Sbjct: 186 YREWIQVDLGLLRFV 200
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 31.8 bits (72), Expect = 0.23
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 32 SLCYNKCIYGYCKGPPDYS------------CQCELGWTGVDCSVNCLCNN 70
+ C + C+ C P +Y+ +C+ W C +C C+N
Sbjct: 157 ADCPSACVNRLCTNPCNYNNDFSNCKSLAKKSKCQTEWIKKKCPASCFCHN 207
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 30.7 bits (70), Expect = 0.25
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 33/112 (29%)
Query: 195 PSRECLWIIGQSLDSNSTAPAD-IILLR------LQPDINVPCNENAVYIYDGLPDFVTS 247
S EC + I ++ L+ ++ VPC + + I G
Sbjct: 27 KSSECSYTI--------DLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAG------- 71
Query: 248 VGGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQ 297
S G FC E E + +S + I ++ + G+ +Y+
Sbjct: 72 ------SKVWGPFCGEKSP---EPISTQSHSIQILFRSDNSGENRGWRLSYR 114
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 32.6 bits (73), Expect = 0.25
Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 34/121 (28%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
C +C GPPD C+C + LC ++S+C CHD+
Sbjct: 23 CKGRCFELQEVGPPD--CRC-----------DNLCKSYSSC---------CHDFD----- 55
Query: 94 QYCRAGSYGNATTQEGC-------RKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCER 146
+ C + G T++ C C C+ S C + C + + +CE
Sbjct: 56 ELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEE 115
Query: 147 C 147
Sbjct: 116 I 116
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 30.9 bits (70), Expect = 0.42
Identities = 8/63 (12%), Positives = 13/63 (20%), Gaps = 9/63 (14%)
Query: 41 GYCK-GPPDYSCQCELGWTGVDCSVNCL------CNNHSTCVHGIGI--CDECHDWTTGD 91
+C C C G+T D C+ C + +
Sbjct: 93 QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATSSSGEAPDS 152
Query: 92 HCQ 94
Sbjct: 153 ITW 155
Score = 28.6 bits (64), Expect = 2.3
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 48 DYSCQCELGWTGVDCSVNCL-------CNNHSTCVHGIG--ICDECHDWTTGDHCQ 94
+Y+C C G+ G +C + + C +C C T
Sbjct: 62 EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVC-SCARGYTLADNG 116
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 30.5 bits (68), Expect = 0.46
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 8/120 (6%)
Query: 43 CKGPPDYSCQ-CELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSY 101
C C+ C G + C C +G+ + T + C G +
Sbjct: 29 CGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGCSPGHF 88
Query: 102 GNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
+ C C + +Q C+ C PG + C
Sbjct: 89 CIVQDGDHCAACRAYA-------TSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEEC 141
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 30.4 bits (69), Expect = 0.56
Identities = 13/119 (10%), Positives = 24/119 (20%), Gaps = 29/119 (24%)
Query: 49 YSCQCELGWTGVDCSVNCL------CNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYG 102
Y C C + V C+ C G C G
Sbjct: 24 YICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG----------DTACS-NEIGVGV 72
Query: 103 NATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTC 161
+ + C + ++ + +C G+ +P
Sbjct: 73 SKASCC-CSLGKAWGTPCEMCPAVNTSEYKILC----------PGGEGFRPNP-ITVIL 119
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.3 bits (70), Expect = 0.58
Identities = 20/142 (14%), Positives = 33/142 (23%), Gaps = 16/142 (11%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHG------IGICDECHDW 87
N C C C+ N C H C+ C C +
Sbjct: 166 TINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECC-HPECLGSCSAPDNDTACVACRHY 224
Query: 88 TTGDHC-QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCER 146
C C +Y +C ++L S + G+ +
Sbjct: 225 YYAGVCVPACPPNTYRFEG-----WRCVDRDFCANILSAESS---DSEGFVIHDGECMQE 276
Query: 147 CLPGYYGDPTDGGTCYYQCMAR 168
C G+ + + C
Sbjct: 277 CPSGFIRNGSQSMYCIPCEGPC 298
Score = 31.3 bits (70), Expect = 0.58
Identities = 18/107 (16%), Positives = 26/107 (24%), Gaps = 7/107 (6%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGN 120
S N + N G + + +Y TT + C
Sbjct: 133 AVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKR 192
Query: 121 SVLGVCDSITGECI--CQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
+ + EC+ C C C YY G C C
Sbjct: 193 ACTENNECCHPECLGSCSAPDNDTACVACRHYYY-----AGVCVPAC 234
Score = 28.3 bits (62), Expect = 5.5
Identities = 16/139 (11%), Positives = 26/139 (18%), Gaps = 10/139 (7%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHC 93
G T + + C + + C
Sbjct: 142 NKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECC 201
Query: 94 QYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSIT-----GECICQDNTQG--KNCER 146
GS C C + + C T C+ +D
Sbjct: 202 HPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESS 261
Query: 147 CLPGYYGDPTDGGTCYYQC 165
G+ G C +C
Sbjct: 262 DSEGFV---IHDGECMQEC 277
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 30.7 bits (69), Expect = 0.63
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 31/116 (26%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLR------LQPDINVPCNENAVYIYDGLPDFVTSV 248
C + I I L ++ C +++ I
Sbjct: 188 KLSSCAYNI-------RLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTD-------- 232
Query: 249 GGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYK--QGKPSEGFNATYQIFSCP 302
G FC + + +E S +TI + + G+ Y + P
Sbjct: 233 -----KREYGPFCGKTLP---PRIETDSNKVTITFTTDESGNHTGWKIHYTSTAQP 280
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 30.0 bits (68), Expect = 0.70
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 48 DYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAG 99
Y C C + G +C + +G G C D T C G
Sbjct: 67 SYICFCLPAFEGRNCETHKDDQLICVNENG-GCEQYCSDHTGTKRSCRCHEG 117
Score = 27.3 bits (61), Expect = 4.6
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 32 SLCYNKCIYGYCKGPPD--YSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICD 82
+ N YC SC+C G++ + V+C C I +
Sbjct: 91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKI-PILE 142
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 30.3 bits (68), Expect = 0.76
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 32 SLCYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNN 70
+ C C C+ W +C +C C N
Sbjct: 181 NPCTIYNKLTNCDSLLK-QSSCQDDWIKSNCPASCFCRN 218
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 30.8 bits (69), Expect = 0.81
Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 30/159 (18%)
Query: 195 PSRECLWIIGQSLDSNSTAPADIILLR-----LQPDINVP----CNENAVYIYDGLPDFV 245
+ +C + I P I+L+ L+ D C + + I+DG+P
Sbjct: 30 HNLDCTFTI-------LAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPH-- 80
Query: 246 TSVGGTHQSTTLGVFCTEDMHRGYEVLEAKSGVMTIHYKQGK--PSEGFNATYQIFSCPD 303
+G +C L + +G++++ + +GF+A Y +
Sbjct: 81 -------VGPLIGKYCGTKTP---SELRSSTGILSLTFHTDMAVAKDGFSARYYLVHQEP 130
Query: 304 KCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNH 342
+
Sbjct: 131 LENFQCNVPLGMESGRIANEQISASSTYSDGRWTPQQSR 169
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 30.7 bits (69), Expect = 0.82
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 11/144 (7%)
Query: 38 CIYGYCK-GPPDYSCQCELG--WTGVD--CSVNCLCNNHSTCVHGIGICDECHDWTTGDH 92
C + K S C G W+ ++ C+ + C + + +
Sbjct: 32 CEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSQDCGLPPDVPNAQPALEGRTSFPEDTV 91
Query: 93 CQY-CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGY 151
Y C + ++ C S + + C+ ++ K +
Sbjct: 92 ITYKCEES-FVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYF 150
Query: 152 YGDPTDGGTCYYQCMARGMLTGPG 175
G Y+C
Sbjct: 151 ----PVGTVVEYECRPGYRREPSL 170
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 28.9 bits (65), Expect = 1.0
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 301 CPDKCPENRTCINN----QCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
C C + TCI+ C C G CQ E+ C L++G C
Sbjct: 18 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCS--LDNGGCT 65
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 30.3 bits (67), Expect = 1.0
Identities = 11/53 (20%), Positives = 13/53 (24%), Gaps = 6/53 (11%)
Query: 48 DYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGS 100
C C T H C G+C C G C+ R
Sbjct: 452 HTLCDCNCSDTQPQAPHCSDGQGHLQC----GVC-SCAPGRLGRLCE-SRGLE 498
Score = 29.5 bits (65), Expect = 2.0
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 300 SCPDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHE 338
P C C P R G C+ N +
Sbjct: 465 QAPHCSDGQGHLQCGVCSCAPGRLGRLCESRGLENLYFQ 503
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 30.3 bits (68), Expect = 1.0
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 48 DYSCQCELGWTGVDCSVNCLCNNHSTCVH 76
++ C+C GW C + H H
Sbjct: 396 EFKCRCYPGWQAPWCERKSMWTGHHHHHH 424
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.3 bits (67), Expect = 1.3
Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 11/111 (9%)
Query: 61 DCSVNC--LCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSH 118
+C C + C + T HCQ + C
Sbjct: 154 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL 213
Query: 119 GNSVLGVCDSITG--ECI-CQDNTQGKNC-ERCLPGYYGDPTDGGTCYYQC 165
GN C +C+ C++ C E C P YY + C
Sbjct: 214 GN-----CSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFC 259
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 28.9 bits (65), Expect = 1.3
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 48 DYSCQCELGWTGVDCSVN---CLCNNH 71
+YSC+C + G +C ++H
Sbjct: 117 NYSCECPGEFMGRNCQYKGGGHHHHHH 143
Score = 27.0 bits (60), Expect = 5.5
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 6/39 (15%)
Query: 305 CPENRTCINN----QCVCPPRRTGPDCQEEI--CPNECH 337
C C + C CP G +CQ + + H
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
Score = 27.0 bits (60), Expect = 6.7
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 48 DYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICD 82
+SC+C G+T +CS + G C
Sbjct: 22 SFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT 56
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.9 bits (66), Expect = 1.4
Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 7/104 (6%)
Query: 62 CSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNS 121
S + L N + +G C +C C + T ++C G S
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKS 203
Query: 122 VLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
C + + +C C TC C
Sbjct: 204 PSDCCHNQC--AAGCTGPRESDCLVCRKFRD-----EATCKDTC 240
Score = 28.4 bits (62), Expect = 4.9
Identities = 26/159 (16%), Positives = 41/159 (25%), Gaps = 26/159 (16%)
Query: 34 CYNKCIYGYCKGP-PDYSCQCELGWTGVDCSVNCLCNNHSTCVH----------GIGICD 82
C C G C G + + CS C + S C H C
Sbjct: 166 CDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCHNQCAAGCTGPRESDCL 225
Query: 83 ECHDWTTGDHC-QYCRAGSYGNATTQEGCRKCDCN-SHGNSVLGVCDS-----ITGECIC 135
C + C C N TT + + S G + + C G C+
Sbjct: 226 VCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVR 285
Query: 136 Q--------DNTQGKNCERCLPGYYGDPTDGGTCYYQCM 166
+ + C++C G ++
Sbjct: 286 ACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEFKDS 324
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 30.0 bits (67), Expect = 1.5
Identities = 18/161 (11%), Positives = 38/161 (23%), Gaps = 12/161 (7%)
Query: 27 YIFNASLCYNKCIYGYC-KGPPDYSCQCELGWTGVD--CSVNCLCNNHSTCVHGIGICDE 83
+ + + +C G+ KG CQ W C +C
Sbjct: 217 FSLRDIVEF-RCHPGFIMKGASSVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGM 275
Query: 84 CHDWTTGDHCQY-CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCD-------SITGECIC 135
++ G++ C G ++Q C+ + + +
Sbjct: 276 KKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWNPLLAKCVSRLADPEVPRDCGCKPCI 335
Query: 136 QDNTQGKNCERCLPGYYGDPTDGGTCYYQCMARGMLTGPGP 176
+ + P T T C+ +
Sbjct: 336 CTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPE 376
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 28.9 bits (64), Expect = 1.7
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 88 TTGDHCQYCRAGSYGNATTQEGCRKC-DCNSHGNSVL---------GVCDSITGECICQD 137
+ C+ C G Y + + + C+ C CN S VC G
Sbjct: 35 SQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDS 94
Query: 138 NTQGKNCERCLPGYYGDPTDGG 159
G +C C PG++ +
Sbjct: 95 YKPGVDCAPCPPGHFSPGDNQA 116
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase;
2.10A {Azotobacter vinelandii} PDB: 2pyh_A*
Length = 377
Score = 29.4 bits (65), Expect = 1.8
Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 14/98 (14%)
Query: 56 GWTGVDCSVNCLCNN--HSTCVHGIGICDECHD--------WTTGDHCQYCRAGSYGNAT 105
G+ + NN ++ HG + HD + G + G A
Sbjct: 174 GFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLAL 233
Query: 106 TQ----EGCRKCDCNSHGNSVLGVCDSITGECICQDNT 139
+G D G + D N
Sbjct: 234 PSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNG 271
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 29.8 bits (66), Expect = 1.9
Identities = 9/97 (9%), Positives = 17/97 (17%), Gaps = 5/97 (5%)
Query: 32 SLCYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGD 91
+ + G C++G C
Sbjct: 156 DVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNG----GVCSVVDDQA 211
Query: 92 HCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDS 128
C C + +G + G+ S
Sbjct: 212 VCD-CSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLS 247
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth
factor, NGF, neurotrophin, common neurotrophin receptor;
2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1
g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Length = 161
Score = 28.6 bits (63), Expect = 2.3
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 68 CNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCR---KCDCNSHGNSVLG 124
C ++ T + + C T Q A C D +
Sbjct: 39 CLDNVTFSDVVSATEPCKPCTECLGLQSMSAPCVEADDAVCRCAYGYYQDEETGHCEACS 98
Query: 125 VCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGT 160
VC+ +G + Q CE C G Y D +
Sbjct: 99 VCEVGSGLVFSCQDKQNTVCEECPEGTYSDEANHVD 134
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 29.2 bits (66), Expect = 2.4
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 302 PDKCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTC 345
P KC + C CP +TG C E+ P F++ C
Sbjct: 18 PKKC--RQECKR---SCPVVKTGKLCI-EVTPTSKIAFISEILC 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 29.2 bits (66), Expect = 2.7
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 15/44 (34%)
Query: 303 DKCPENRTCINNQC--VCPPRRTGPDC------------QEEIC 332
DKC C + C VCP R G + QE C
Sbjct: 27 DKC-NPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASC 69
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 29.0 bits (64), Expect = 3.1
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 304 KCPENRTCINNQCVCPPRRTGPDCQEEICPNECHEFLNHGTCD 346
C C+ ++C+ C C +G C
Sbjct: 424 PCGPQMMCLEHRCLPVASFNFSTCLSSKEGTICS---GNGVCS 463
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 28.6 bits (63), Expect = 4.0
Identities = 21/135 (15%), Positives = 34/135 (25%), Gaps = 7/135 (5%)
Query: 32 SLCYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGD 91
+ +C Y P +C L W+ G+ D G
Sbjct: 926 TSLKYECRPEYYGRPFSITCLDNLVWSSPKDVCKRKSCKTPPDPVN-GMVHVITDIQVGS 984
Query: 92 HCQY-CRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPG 150
Y C G + C +H ++ +C I C N +
Sbjct: 985 RINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIP----CGLPPTIAN-GDFIST 1039
Query: 151 YYGDPTDGGTCYYQC 165
+ G Y+C
Sbjct: 1040 NRENFHYGSVVTYRC 1054
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 26.6 bits (58), Expect = 4.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 38 CIYGYCKGPPD---YSCQCELGWTGVDC 62
CI+G CK + SC C G+ G C
Sbjct: 48 CIHGECKYVKELRAPSCICHPGYHGERC 75
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 27.9 bits (63), Expect = 4.6
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 76 HGIGICDECHDWTTGDHCQYCR 97
+ +C C + T + C C
Sbjct: 52 RDLHVCPICFNITDAEKCDVCA 73
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.4 bits (62), Expect = 4.7
Identities = 27/133 (20%), Positives = 35/133 (26%), Gaps = 12/133 (9%)
Query: 34 CYNKCIYGYCKGPPDYSCQ-CELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDH 92
C C G C G + +CQ CS C + S C H C
Sbjct: 166 CDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSDCCH--NQCAAGCTGPRESD 223
Query: 93 CQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYY 152
C CR C N D + + ++C Y
Sbjct: 224 CLVCRKFRDEATCKDT----CPPLMLYNPTTYQMDV---NPEGKYSFGATCVKKCPRNYV 276
Query: 153 GDPTDGGTCYYQC 165
TD G+C C
Sbjct: 277 --VTDHGSCVRAC 287
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 27.3 bits (60), Expect = 5.1
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 48 DYSCQCELGWTGVDCSVNC-LCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATT 106
D C C S N C N S C++G + C + + C AG +
Sbjct: 83 DTVCGCRKNQYRHYWSENLFQCFNCSLCLNG-TVHLSCQEKQ--NTVCTCHAGFFLRENE 139
Query: 107 QEGCRKC 113
C C
Sbjct: 140 CVSCSNC 146
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 5.7
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 112 KC-DCNSHGNSVLGVCDSITGECICQD 137
C +C + + V G+ +C
Sbjct: 23 TCPECKVYPPKI--VERFSEGDVVCAL 47
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 27.7 bits (61), Expect = 6.7
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 5/64 (7%)
Query: 302 PDKCPENRTCINN----QCVCPPRR-TGPDCQEEICPNECHEFLNHGTCDLLLTGVHITH 356
D C C+ C C +GP C + + T T
Sbjct: 190 EDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTR 249
Query: 357 GRTL 360
L
Sbjct: 250 ADRL 253
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 27.6 bits (61), Expect = 7.7
Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 7/115 (6%)
Query: 43 CKGPPDYS-CQCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGD---HCQYCRA 98
G D++ C C N + + CD +D C+ C+
Sbjct: 185 TMGYQDFADVVCYTQKADSPMDDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQG 243
Query: 99 GSY--GNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGY 151
+ + +C+ + + Q+ T+ +
Sbjct: 244 KGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERR 298
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 27.8 bits (61), Expect = 8.1
Identities = 25/152 (16%), Positives = 37/152 (24%), Gaps = 10/152 (6%)
Query: 32 SLCYNKCIYGY-CKGPPDYSCQCELGWTG-VDCSVNCLCNNHSTCVHGIGICDECHDWTT 89
+ C GY G CQ + W + C +G D+
Sbjct: 469 PDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLEDFPY 528
Query: 90 GDHCQY-CRAGSYGNAT-TQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERC 147
G Y C G + G C S+ G C +
Sbjct: 529 GTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQER-GTWSGPAPLCKLSLLAVQCSHVHI 587
Query: 148 LPGYYGDPTD-----GGTCYYQCMARGMLTGP 174
GY + T ++C + L G
Sbjct: 588 ANGYKISGKEAPYFYNDTVTFKCYSGFTLKGS 619
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 27.1 bits (59), Expect = 8.5
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 52 QCELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCR 111
C C C N C G C + + Y N E C
Sbjct: 8 YCADKARDGVCDEAC---NSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCN 64
Query: 112 KCDCNSHGNSVLGVCDSITGECICQDNTQGKNCER 146
+C G + + C D+ + +C +
Sbjct: 65 TVECLFDNFECQGNSKTCKYDKYCADHFKDNHCNQ 99
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 27.5 bits (60), Expect = 8.8
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 7/90 (7%)
Query: 34 CYNKCIYGYCKGPPDYSCQCELGWTGVDCSVNCLCNNHSTCVHGIGICD---ECHDWTTG 90
C G + P CS C+H CD +C D +
Sbjct: 148 NDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 207
Query: 91 DHCQYCRAGSY----GNATTQEGCRKCDCN 116
++C + G R+CD
Sbjct: 208 ENCAVATCRPDEFQCSDGNCIHGSRQCDRE 237
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 26.7 bits (58), Expect = 8.8
Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 9/115 (7%)
Query: 43 CKGPPDYSCQ-CELGWTGVDCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSY 101
C D C CE + C + + + + + CR G Y
Sbjct: 35 CTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQ-NRICTCRPGWY 93
Query: 102 GNATTQEGCRKCDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPT 156
+ QEGCR C + L C G T C+ C PG + + T
Sbjct: 94 CALSKQEGCRLC-------APLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTT 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.481
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,950,600
Number of extensions: 371235
Number of successful extensions: 2286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1569
Number of HSP's successfully gapped: 571
Length of query: 377
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 282
Effective length of database: 4,049,298
Effective search space: 1141902036
Effective search space used: 1141902036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)