RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9819
(377 letters)
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 51.8 bits (124), Expect = 9e-10
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 113 CDCNSHGN-SVLGVCDSITGECI-CQDNTQGKNCERCLPGYYGDPTDGGTC 161
C CN + + + +G C+ +TGEC+ C NT G C+RC G++G+P
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPA 51
Score = 45.3 bits (107), Expect = 2e-07
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKC 113
C+ N N C G C +C T G +C C+ G +GN KC
Sbjct: 2 QCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 46.4 bits (110), Expect = 6e-08
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 113 CDCNSHG-NSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGG 159
C CN +G C+ +TG+C C + G++C C PGYY + G
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQG 48
Score = 27.9 bits (62), Expect = 0.29
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 61 DCSVNCLCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRK 112
C+ S+C G C +C +G C C G Y + +GC +
Sbjct: 2 ACNPYGTVQQQSSCNPVTGQC-QCLPHVSGRDCGTCDPGYYNL-QSGQGCER 51
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 41.4 bits (97), Expect = 4e-06
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 66 CLCNNHSTCVH----GIGICDECHDWTTGDHCQYCRAGSYGNATTQEG-CRKC 113
C C S+C +C C T G C+ C G +G+ G R C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
Score = 40.7 bits (95), Expect = 8e-06
Identities = 15/53 (28%), Positives = 18/53 (33%)
Query: 113 CDCNSHGNSVLGVCDSITGECICQDNTQGKNCERCLPGYYGDPTDGGTCYYQC 165
C C + + C T GK CE C GY+GDP C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.8 bits (57), Expect = 1.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 48 DYSCQCELGWTGVDCSVN 65
+Y+C C G+ G +C +
Sbjct: 20 EYTCTCLEGFEGKNCELF 37
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 25.0 bits (55), Expect = 2.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 48 DYSCQCELGWTGVDCSVN 65
++ C C G+ GV C VN
Sbjct: 21 EFQCICMPGYEGVHCEVN 38
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 24.7 bits (54), Expect = 2.4
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 305 CPENRTCINNQCVCPPRRTGPDCQ 328
P C +C C P G CQ
Sbjct: 17 GPGRGLCFCGKCRCHPGFEGSACQ 40
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 3.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 45 GPPDYSCQCELGWTGVDCSVN 65
+ CQC G+TG C ++
Sbjct: 22 TLGSFECQCLQGYTGPRCEID 42
Score = 23.5 bits (51), Expect = 7.4
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 302 PDKCPENRTCINN----QCVCPPRRTGPDCQ 328
+ C CIN +C C TGP C+
Sbjct: 10 ANPCEHAGKCINTLGSFECQCLQGYTGPRCE 40
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 24.8 bits (54), Expect = 3.5
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 301 CPDKCPENRTCIN----NQCVCPPRRTGPDCQEEI 331
C C + TCI+ C C G CQ E+
Sbjct: 11 CASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREV 45
Score = 24.4 bits (53), Expect = 4.1
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 36 NKCIYGYCK-GPPDYSCQCELGWTGVDCSVN 65
C +G C G +SC C GW G C
Sbjct: 14 LCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE 44
>d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens
protein SpaK (Spa15) {Salmonella typhimurium [TaxId:
90371]}
Length = 134
Score = 26.3 bits (58), Expect = 3.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 202 IIGQSLDSNSTAPADIILLRLQ--PDINVPCNENAVYIYDGLPDF 244
+IG +DS+ST I+L L P I + ++ V+I+ L
Sbjct: 23 LIGG-IDSHST-----IVLDLFALPSICISVKDDDVWIWAQLGAD 61
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 23.9 bits (52), Expect = 4.8
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 45 GPPDYSCQCELGWTGVDCSV 64
Y C C G+ G +C +
Sbjct: 20 DINSYECWCPFGFEGKNCEL 39
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 24.0 bits (52), Expect = 5.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 38 CIYGYCKGPPD---YSCQCELGWTGVDC 62
C++G C D C+CE+G+TGV C
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRC 41
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 23.9 bits (52), Expect = 5.7
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 45 GPPDYSCQCELGWTGVDC 62
Y C C + G +C
Sbjct: 19 QLQSYICFCLPAFEGRNC 36
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 23.6 bits (51), Expect = 6.0
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 4/34 (11%)
Query: 302 PDKCPENRTCINN----QCVCPPRRTGPDCQEEI 331
C + C+ C C P +G C++ +
Sbjct: 6 NTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 23.5 bits (51), Expect = 7.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 38 CIYGYCKGPPD---YSCQCELGWTGVDC 62
CI+G CK + SC C G+ G C
Sbjct: 10 CIHGECKYVKELRAPSCICHPGYHGERC 37
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 25.8 bits (56), Expect = 8.8
Identities = 11/77 (14%), Positives = 17/77 (22%), Gaps = 3/77 (3%)
Query: 67 LCNNHSTCVHGIGICDECHDWTTGDHCQYCRAGSYGNATTQEGCRKCDCNSHGNSVLGVC 126
L N V+G DE + G + + L V
Sbjct: 138 LDFNKIILVYGEPGIDEVSPIGNTFMKIVSK---RGIEEVKLNVTDFGISPIPIEKLIVN 194
Query: 127 DSITGECICQDNTQGKN 143
+ GK+
Sbjct: 195 SAEDSAIKIVRAFLGKD 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.481
Gapped
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,543,955
Number of extensions: 82529
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 176
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)