BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9821
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
DVDEC LG + C KC NT GS+ CQC +G+ G
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 36
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
DV+EC + C DA C + G + C C G+ G
Sbjct: 42 DVNECVS--NPCQNDATCLDQIGEFQCICMPGYEG 74
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
DVDEC LG + C KC NT GS+ CQC +G+ G
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 38
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
DV+EC + C DA C + G + C C G+ G
Sbjct: 44 DVNECVS--NPCQNDATCLDQIGEFQCICMPGYEG 76
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 29 SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
S + C DVDEC G H C C NT GSYSC+C+ G+
Sbjct: 89 SENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 2 LCFISDSCAVAVAARHN--ISVYEEDARWSYSLCPDVDECG-LGLHDCHKDAKCTNTHGS 58
C SC A A R N S + E C D++EC L C K + C NT GS
Sbjct: 8 WCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGS 67
Query: 59 YSCQCKRGFH 68
Y C C G+
Sbjct: 68 YDCVCSPGYE 77
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 26 ARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
+R + C D+DEC + C K+ C NT GS+ CQC G D
Sbjct: 97 SRIKGTQCEDIDECEVFPGVC-KNGLCVNTRGSFKCQCPSGMTLD 140
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTN----THGSYSCQC 63
C + V E A+ +C + C H+CHK A+C + Y C+C
Sbjct: 74 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPXYKCEC 133
Query: 64 KRGFHGDG 71
+ G+ GDG
Sbjct: 134 QTGYAGDG 141
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 8 SCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTN----THGSYSCQC 63
C + V E A+ +C + C H+CHK A+C + Y C+C
Sbjct: 71 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCEC 130
Query: 64 KRGFHGDG 71
+ G+ GDG
Sbjct: 131 QTGYAGDG 138
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 33 CPDVDECGLGLHDCHK-DAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC D C N G Y CQC+ GF D T K
Sbjct: 37 CEDIDEC----QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 78
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 77 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 118
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH 68
D+DEC L + KC NT GS+ C+C G++
Sbjct: 121 DIDEC-QELPGLCQGGKCINTFGSFQCRCPTGYY 153
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH 68
D+DEC L + KC NT GS+ C+C G++
Sbjct: 121 DIDEC-QELPGLCQGGKCINTFGSFQCRCPTGYY 153
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 331 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 372
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 349 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 390
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 66 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 66 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 107
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C K +C T G+Y+C C GF+G
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYG 32
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH 68
D+DEC + C + +C NT G + C+C G+
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYE 34
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRG 66
C D+DEC C + C NT GSY C+C G
Sbjct: 43 CMDIDECQRDPLLC-RGGVCHNTEGSYRCECPPG 75
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 39 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACKA 81
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 42 CEDIDEC-QDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin
K- Dependent Protein S
Length = 87
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
DVDEC L C A C N G + C+C G+ + K+
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGYRYNLKS 39
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C K +C T G+Y+C C GF+G
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYG 150
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding
Epidermal Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 39 CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 80
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTK 77
C D+DEC C + C N G Y CQC+ GF D T K
Sbjct: 42 CEDIDEC-QDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTKACK 83
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
D+DEC D K +C NT GSY C+C G+
Sbjct: 4 DMDECKE--PDVCKHGQCINTDGSYRCECPFGY 34
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
C D DEC +G + C + C N G + C C+ GF +C
Sbjct: 41 CVDTDECSVG-NPC-GNGTCKNVIGGFECTCEEGFEPGPMMTC 81
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
DV+EC + C DA C + G + C C G+ G
Sbjct: 1 DVNECIS--NPCQNDATCLDQIGEFQCICMPGYEG 33
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEG 33
>pdb|1GL4|A Chain A, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 285
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 39 CGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGK 72
C H C A+C + + C+C + G+G+
Sbjct: 8 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGR 41
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr132747
Length = 195
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG 73
>pdb|1Z1Y|A Chain A, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
pdb|1Z1Y|B Chain B, Crystal Structure Of Methylated Pvs25, An Ookinete Protein
From Plasmodium Vivax
Length = 186
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 46 CHKDAK-CTNTHGSYSCQCKRGFHGDGKTS 74
C+ D + C N G Y CQC GF D + +
Sbjct: 146 CNTDNEVCXNVEGVYXCQCMEGFTFDXEXN 175
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa
Complexed With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating
Basic Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 50 CQNQGKCKDGLGEYTCTCLEGFEG 73
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 24 EDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
ED R C DV+EC + + CTN+ G++ C C+ G+
Sbjct: 36 EDGR----TCQDVNECA---EEGYCSQGCTNSEGAFQCWCEAGY 72
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-
(2-oxo-2-
Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2-
Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 11 CQNQGKCKDGLGEYTCTCLEGFEG 34
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEG 35
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 10 CQNQGKCKDGLGEYTCTCLEGFEG 33
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule,
S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 12 CQNQGKCKDGLGEYTCTCLEGFEG 35
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 5 ISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCK 64
+ +C++ A + D WS D D+C H C C G Y+C C
Sbjct: 18 LXXACSLXXARXVFXDAXQTDXFWSKY--KDGDQCEG--HPCLNQGHCKXGIGDYTCTCA 73
Query: 65 RGFHG 69
GF G
Sbjct: 74 EGFEG 78
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C KC + G Y+C C GF G
Sbjct: 55 CQNQGKCKDGLGEYTCTCLEGFEG 78
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein
From Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 52 CTNTHGSYSCQCKRGFHGD 70
C N G Y CQC GF D
Sbjct: 153 CKNVEGVYKCQCMEGFTFD 171
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 29 SYSLCPDVDECG-LGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
++ + DVDEC + D C N G Y C C+ G+ H D +T
Sbjct: 114 AHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 29 SYSLCPDVDECG-LGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
++ + DVDEC + D C N G Y C C+ G+ H D +T
Sbjct: 114 AHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRT 161
>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of
Cartilage Oligomeric Matrix Protein.
pdb|3FBY|B Chain B, The Crystal Structure Of The Signature Domain Of
Cartilage Oligomeric Matrix Protein.
pdb|3FBY|C Chain C, The Crystal Structure Of The Signature Domain Of
Cartilage Oligomeric Matrix Protein
Length = 551
Score = 25.4 bits (54), Expect = 8.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 32 LCPDVDECGLGLHDCHKDAKCT-NTHGSYSCQCKRGFHGDG 71
CPD +CH+ A C GS SC C G+ G+G
Sbjct: 20 FCPDGSPS-----ECHEHADCVLERDGSRSCVCAVGWAGNG 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,620,562
Number of Sequences: 62578
Number of extensions: 92626
Number of successful extensions: 239
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 70
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)