Query psy9821
Match_columns 78
No_of_seqs 104 out of 1352
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 20:34:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07645 EGF_CA: Calcium-bindi 98.6 7.4E-08 1.6E-12 41.3 3.3 35 35-69 1-35 (42)
2 KOG4289|consensus 98.6 7.2E-08 1.6E-12 65.8 4.0 53 16-70 1218-1271(2531)
3 KOG1214|consensus 98.5 1.3E-07 2.9E-12 61.8 4.4 57 17-76 806-864 (1289)
4 KOG1219|consensus 98.4 7.3E-07 1.6E-11 63.4 5.8 52 16-69 3882-3934(4289)
5 KOG1214|consensus 98.3 2.3E-06 5.1E-11 56.2 5.9 64 3-69 702-767 (1289)
6 KOG1219|consensus 98.3 1.1E-06 2.5E-11 62.5 4.1 55 13-69 3917-3973(4289)
7 PF12947 EGF_3: EGF domain; I 98.0 8.9E-06 1.9E-10 33.7 2.4 31 43-73 5-35 (36)
8 KOG4289|consensus 97.9 2.2E-05 4.7E-10 54.5 4.7 58 3-66 1247-1308(2531)
9 PF12662 cEGF: Complement Clr- 97.9 1.1E-05 2.4E-10 30.5 1.9 20 19-38 1-24 (24)
10 PF14670 FXa_inhibition: Coagu 97.7 1.6E-05 3.5E-10 32.9 0.9 24 5-28 4-27 (36)
11 smart00179 EGF_CA Calcium-bind 97.5 0.00033 7.2E-09 28.8 3.9 32 36-68 2-33 (39)
12 PF00008 EGF: EGF-like domain 97.4 4.1E-05 8.8E-10 30.8 0.4 27 2-31 5-31 (32)
13 KOG4260|consensus 97.3 0.00023 4.9E-09 41.9 2.6 47 23-69 221-269 (350)
14 PF12661 hEGF: Human growth fa 97.3 9.8E-05 2.1E-09 23.9 0.6 13 21-33 1-13 (13)
15 PF00008 EGF: EGF-like domain 97.2 0.00037 8E-09 28.0 1.9 27 44-70 4-31 (32)
16 PF14670 FXa_inhibition: Coagu 97.2 0.00077 1.7E-08 27.9 2.8 25 44-70 6-30 (36)
17 smart00181 EGF Epidermal growt 97.1 0.00084 1.8E-08 27.0 2.8 18 51-68 12-29 (35)
18 cd00054 EGF_CA Calcium-binding 97.1 0.0021 4.5E-08 26.0 3.7 32 37-69 3-34 (38)
19 PF12947 EGF_3: EGF domain; I 97.0 0.00026 5.7E-09 29.3 0.5 25 3-31 8-32 (36)
20 cd01475 vWA_Matrilin VWA_Matri 96.9 0.0018 3.8E-08 36.9 3.8 40 29-70 180-219 (224)
21 smart00179 EGF_CA Calcium-bind 96.9 0.0018 3.9E-08 26.5 2.9 22 12-33 16-38 (39)
22 cd00053 EGF Epidermal growth f 96.9 0.004 8.8E-08 24.7 3.7 27 44-70 6-32 (36)
23 smart00181 EGF Epidermal growt 96.4 0.011 2.3E-07 23.7 3.5 27 3-29 2-29 (35)
24 KOG1217|consensus 96.2 0.014 3.1E-07 35.9 4.6 58 13-71 245-305 (487)
25 KOG1217|consensus 96.1 0.015 3.4E-07 35.7 4.5 54 17-70 149-203 (487)
26 PF07974 EGF_2: EGF-like domai 95.5 0.024 5.3E-07 22.7 2.4 15 19-33 18-32 (32)
27 KOG1225|consensus 93.9 0.17 3.7E-06 32.7 4.4 41 21-69 297-337 (525)
28 cd01475 vWA_Matrilin VWA_Matri 93.5 0.061 1.3E-06 30.7 1.9 24 6-29 194-217 (224)
29 PHA02887 EGF-like protein; Pro 93.2 0.099 2.1E-06 27.2 2.2 19 17-35 105-123 (126)
30 KOG4260|consensus 91.8 0.16 3.4E-06 30.4 2.0 54 11-68 250-304 (350)
31 PHA03099 epidermal growth fact 91.8 0.15 3.3E-06 27.0 1.8 21 17-37 64-84 (139)
32 KOG1225|consensus 90.7 0.69 1.5E-05 30.1 4.2 45 18-70 263-307 (525)
33 PF06247 Plasmod_Pvs28: Plasmo 88.8 0.24 5.2E-06 28.0 1.1 60 16-76 16-86 (197)
34 PF12946 EGF_MSP1_1: MSP1 EGF 81.9 1.8 3.8E-05 18.0 1.8 28 45-72 6-34 (37)
35 KOG1226|consensus 81.3 3.9 8.4E-05 28.0 4.0 21 21-41 567-590 (783)
36 PF09064 Tme5_EGF_like: Thromb 80.7 1.7 3.7E-05 17.6 1.5 13 60-72 19-31 (34)
37 smart00051 DSL delta serrate l 74.7 2.6 5.7E-05 19.5 1.4 12 22-33 52-63 (63)
38 PF00954 S_locus_glycop: S-loc 72.1 7 0.00015 19.8 2.8 31 37-69 78-108 (110)
39 PF00053 Laminin_EGF: Laminin 62.7 6 0.00013 16.9 1.3 17 18-34 16-32 (49)
40 smart00180 EGF_Lam Laminin-typ 54.0 13 0.00029 15.7 1.6 16 19-34 17-32 (46)
41 cd00055 EGF_Lam Laminin-type e 53.4 13 0.00028 16.0 1.5 16 19-34 18-33 (50)
42 PF04863 EGF_alliinase: Alliin 49.8 7 0.00015 17.7 0.3 19 16-34 32-50 (56)
43 PF01414 DSL: Delta serrate li 44.3 8.5 0.00018 17.8 0.2 11 23-33 53-63 (63)
44 PF01683 EB: EB module; Inter 44.3 29 0.00064 14.9 4.3 31 30-71 19-49 (52)
45 KOG0994|consensus 41.9 25 0.00055 26.0 2.1 14 21-34 1085-1098(1758)
46 PF12955 DUF3844: Domain of un 39.6 23 0.0005 18.2 1.3 30 38-67 7-41 (103)
47 KOG3514|consensus 39.5 25 0.00055 25.8 1.8 22 13-34 637-659 (1591)
48 KOG0196|consensus 36.0 68 0.0015 23.0 3.3 15 55-69 304-318 (996)
49 PF01826 TIL: Trypsin Inhibito 33.3 32 0.00069 14.9 1.2 16 61-76 35-50 (55)
50 PF10588 NADH-G_4Fe-4S_3: NADH 20.4 42 0.0009 13.9 0.3 10 1-10 17-26 (41)
No 1
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.62 E-value=7.4e-08 Score=41.31 Aligned_cols=35 Identities=49% Similarity=1.128 Sum_probs=31.1
Q ss_pred CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 35 ~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
+++||....+.|.....|+|+.|+|.|.|+.||..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~ 35 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYEL 35 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEE
Confidence 47888887788987899999999999999999984
No 2
>KOG4289|consensus
Probab=98.58 E-value=7.2e-08 Score=65.80 Aligned_cols=53 Identities=25% Similarity=0.668 Sum_probs=47.8
Q ss_pred cCCcceeecCCCCCCCCC-CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 16 RHNISVYEEDARWSYSLC-PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 16 ~~~~~~c~c~~g~~~~~C-~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
..+.+.|+||+||+|.+| +++++|. ..+|.+++.|..+.++|.|.|+++|.++
T Consensus 1218 pvnglrCrCPpGFTgd~CeTeiDlCY--s~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1218 PVNGLRCRCPPGFTGDYCETEIDLCY--SGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred ccCceeEeCCCCCCcccccchhHhhh--cCCCCCCCceEEecCceeEEecCCcccc
Confidence 457899999999999999 7899998 5789999999999999999999999864
No 3
>KOG1214|consensus
Probab=98.54 E-value=1.3e-07 Score=61.75 Aligned_cols=57 Identities=40% Similarity=0.793 Sum_probs=49.7
Q ss_pred CCcceeecCCCCC--CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCCCCcee
Q psy9821 17 HNISVYEEDARWS--YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76 (78)
Q Consensus 17 ~~~~~c~c~~g~~--~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~~c~ 76 (78)
-+.|+|.|-+||. |..|.+.++|. ++.|.+..+|.+.+++|.|+|..||.+++.. |+
T Consensus 806 gs~y~C~CLPGfsGDG~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~GDGf~-CV 864 (1289)
T KOG1214|consen 806 GSTYSCACLPGFSGDGHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYYGDGFQ-CV 864 (1289)
T ss_pred CceEEEeecCCccCCccccccccccC--ccccCCCceEecCCCcceeecccCccCCCce-ec
Confidence 4679999999995 67888889998 6789888999999999999999999988765 54
No 4
>KOG1219|consensus
Probab=98.43 E-value=7.3e-07 Score=63.36 Aligned_cols=52 Identities=19% Similarity=0.527 Sum_probs=38.9
Q ss_pred cCCcceeecCCCCCCCCC-CCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 16 RHNISVYEEDARWSYSLC-PDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 16 ~~~~~~c~c~~g~~~~~C-~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
-.++|.|.|++.|+|.+| .+++.|. ..+|..+++|.-..++|.|.|+.+|.+
T Consensus 3882 ~~ggy~CkCpsqysG~~CEi~~epC~--snPC~~GgtCip~~n~f~CnC~~gyTG 3934 (4289)
T KOG1219|consen 3882 PKGGYKCKCPSQYSGNHCEIDLEPCA--SNPCLTGGTCIPFYNGFLCNCPNGYTG 3934 (4289)
T ss_pred CCCceEEeCcccccCccccccccccc--CCCCCCCCEEEecCCCeeEeCCCCccC
Confidence 356777888888888888 5677776 567777778887778888888877764
No 5
>KOG1214|consensus
Probab=98.32 E-value=2.3e-06 Score=56.25 Aligned_cols=64 Identities=28% Similarity=0.650 Sum_probs=53.2
Q ss_pred CCCCCcccccccccCCcceeecCCCC--CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 3 CFISDSCAVAVAARHNISVYEEDARW--SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 3 c~~~~~C~~~~~~~~~~~~c~c~~g~--~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
|+-++.|. .....+|.|.|+.|| +++.|.+.++|....+.|.+...|++.++.|+|.|..+|..
T Consensus 702 cdt~a~C~---pg~~~~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F 767 (1289)
T KOG1214|consen 702 CDTTARCH---PGTGVDYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEF 767 (1289)
T ss_pred cCCCcccc---CCCCcceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeeccee
Confidence 44444443 355678999999999 57899999999988899999999999999999999998864
No 6
>KOG1219|consensus
Probab=98.28 E-value=1.1e-06 Score=62.47 Aligned_cols=55 Identities=24% Similarity=0.533 Sum_probs=47.8
Q ss_pred ccccCCcceeecCCCCCCCCCC--CcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 13 VAARHNISVYEEDARWSYSLCP--DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 13 ~~~~~~~~~c~c~~g~~~~~C~--~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
|..+.++|.|.|+.||+|..|+ ++++|. ...|..++.|++..|+|.|.|.+++++
T Consensus 3917 Cip~~n~f~CnC~~gyTG~~Ce~~Gi~eCs--~n~C~~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3917 CIPFYNGFLCNCPNGYTGKRCEARGISECS--KNVCGTGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred EEecCCCeeEeCCCCccCceeecccccccc--cccccCCceeeccCCceEeccChhHhc
Confidence 4567799999999999999994 478887 568988999999999999999998874
No 7
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=97.97 E-value=8.9e-06 Score=33.72 Aligned_cols=31 Identities=55% Similarity=1.118 Sum_probs=24.4
Q ss_pred CCCCCCCCEEEeCCCCeEeeCCCCceeCCCC
Q psy9821 43 LHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73 (78)
Q Consensus 43 ~~~c~~~~~C~~~~~~~~c~C~~g~~~~~~~ 73 (78)
.+.|.+.+.|.++.+++.|.|..||.+++..
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~~ 35 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEGDGFF 35 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEECCSTC
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCccCCcC
Confidence 4567778999999999999999999998764
No 8
>KOG4289|consensus
Probab=97.93 E-value=2.2e-05 Score=54.49 Aligned_cols=58 Identities=22% Similarity=0.521 Sum_probs=45.0
Q ss_pred CCCCCcccccccccCCcceeecCCCCCCCCCCC---cccCCCCCCCCCCCCEEEeCC-CCeEeeCCCC
Q psy9821 3 CFISDSCAVAVAARHNISVYEEDARWSYSLCPD---VDECGLGLHDCHKDAKCTNTH-GSYSCQCKRG 66 (78)
Q Consensus 3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~~C~~---~~~c~~~~~~c~~~~~C~~~~-~~~~c~C~~g 66 (78)
|.+|..| ....+.|.|.|.+||+|++|+- ...|. ++.|.++++|.+.+ ++|.|.|+.|
T Consensus 1247 C~nng~C----~srEggYtCeCrpg~tGehCEvs~~agrCv--pGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1247 CGNNGRC----RSREGGYTCECRPGFTGEHCEVSARAGRCV--PGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCCCCce----EEecCceeEEecCCccccceeeecccCccc--cceecCCCEEeecCCCceeccCCCc
Confidence 4455544 5678999999999999999942 23354 67899899999876 7788999877
No 9
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.92 E-value=1.1e-05 Score=30.48 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.0
Q ss_pred cceeecCCCCC----CCCCCCccc
Q psy9821 19 ISVYEEDARWS----YSLCPDVDE 38 (78)
Q Consensus 19 ~~~c~c~~g~~----~~~C~~~~~ 38 (78)
+|.|.|++||. +..|++++|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 57899999993 678888764
No 10
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.70 E-value=1.6e-05 Score=32.92 Aligned_cols=24 Identities=4% Similarity=0.016 Sum_probs=19.2
Q ss_pred CCCcccccccccCCcceeecCCCC
Q psy9821 5 ISDSCAVAVAARHNISVYEEDARW 28 (78)
Q Consensus 5 ~~~~C~~~~~~~~~~~~c~c~~g~ 28 (78)
+|..|++.|.+..+++.|.|++||
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy 27 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGY 27 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTE
T ss_pred CCCCcCCCCccCCCceEeECCCCC
Confidence 466788888888888888998888
No 11
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.53 E-value=0.00033 Score=28.80 Aligned_cols=32 Identities=44% Similarity=1.138 Sum_probs=24.7
Q ss_pred cccCCCCCCCCCCCCEEEeCCCCeEeeCCCCce
Q psy9821 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH 68 (78)
Q Consensus 36 ~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~ 68 (78)
+++|... .+|.....|++..++|.|.|+.+|.
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 3555532 5677667899999999999999987
No 12
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.45 E-value=4.1e-05 Score=30.83 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.5
Q ss_pred CCCCCCcccccccccCCcceeecCCCCCCC
Q psy9821 2 LCFISDSCAVAVAARHNISVYEEDARWSYS 31 (78)
Q Consensus 2 ~c~~~~~C~~~~~~~~~~~~c~c~~g~~~~ 31 (78)
.|.++++|.... ...|.|.|++||+|.
T Consensus 5 ~C~n~g~C~~~~---~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 5 PCQNGGTCIDLP---GGGYTCECPPGYTGK 31 (32)
T ss_dssp SSTTTEEEEEES---TSEEEEEEBTTEEST
T ss_pred cCCCCeEEEeCC---CCCEEeECCCCCccC
Confidence 366666665333 589999999999775
No 13
>KOG4260|consensus
Probab=97.31 E-value=0.00023 Score=41.86 Aligned_cols=47 Identities=32% Similarity=0.690 Sum_probs=39.7
Q ss_pred ecCCCC--CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 23 EEDARW--SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 23 ~c~~g~--~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
.|..|| +...|.++++|...+.+|....+|+|..|+|.|....||..
T Consensus 221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 367788 45689999999988888988899999999999998777763
No 14
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=97.30 E-value=9.8e-05 Score=23.88 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=9.2
Q ss_pred eeecCCCCCCCCC
Q psy9821 21 VYEEDARWSYSLC 33 (78)
Q Consensus 21 ~c~c~~g~~~~~C 33 (78)
.|+|++||+|..|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3788999988765
No 15
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.20 E-value=0.00037 Score=27.99 Aligned_cols=27 Identities=30% Similarity=1.029 Sum_probs=23.4
Q ss_pred CCCCCCCEEEeCC-CCeEeeCCCCceeC
Q psy9821 44 HDCHKDAKCTNTH-GSYSCQCKRGFHGD 70 (78)
Q Consensus 44 ~~c~~~~~C~~~~-~~~~c~C~~g~~~~ 70 (78)
.+|...+.|+... +.|.|.|+.+|.++
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 4788789999998 89999999999864
No 16
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.18 E-value=0.00077 Score=27.85 Aligned_cols=25 Identities=40% Similarity=0.926 Sum_probs=19.5
Q ss_pred CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 44 HDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 44 ~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
+-|. ..|++.+++++|.|+.||...
T Consensus 6 GgC~--h~C~~~~g~~~C~C~~Gy~L~ 30 (36)
T PF14670_consen 6 GGCS--HICVNTPGSYRCSCPPGYKLA 30 (36)
T ss_dssp GGSS--SEEEEETTSEEEE-STTEEE-
T ss_pred CCcC--CCCccCCCceEeECCCCCEEC
Confidence 4454 889999999999999999853
No 17
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.13 E-value=0.00084 Score=27.05 Aligned_cols=18 Identities=50% Similarity=1.246 Sum_probs=8.7
Q ss_pred EEEeCCCCeEeeCCCCce
Q psy9821 51 KCTNTHGSYSCQCKRGFH 68 (78)
Q Consensus 51 ~C~~~~~~~~c~C~~g~~ 68 (78)
.|++..+.+.|.|+.||.
T Consensus 12 ~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 12 TCINTPGSYTCSCPPGYT 29 (35)
T ss_pred EEECCCCCeEeECCCCCc
Confidence 444444444555554443
No 18
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.07 E-value=0.0021 Score=25.98 Aligned_cols=32 Identities=47% Similarity=1.159 Sum_probs=24.1
Q ss_pred ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
++|... .+|.....|.+..+.|.|.|+.+|.+
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCC-CCcCCCCEeECCCCCeEeECCCCCcC
Confidence 445421 46766678999999999999999876
No 19
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=96.97 E-value=0.00026 Score=29.26 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=16.2
Q ss_pred CCCCCcccccccccCCcceeecCCCCCCC
Q psy9821 3 CFISDSCAVAVAARHNISVYEEDARWSYS 31 (78)
Q Consensus 3 c~~~~~C~~~~~~~~~~~~c~c~~g~~~~ 31 (78)
|..+++|. +..+.+.|.|++||.|.
T Consensus 8 C~~nA~C~----~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 8 CHPNATCT----NTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp S-TTCEEE----E-TTSEEEEE-CEEECC
T ss_pred CCCCcEee----cCCCCEEeECCCCCccC
Confidence 56666665 44458999999999653
No 20
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.95 E-value=0.0018 Score=36.89 Aligned_cols=40 Identities=33% Similarity=0.647 Sum_probs=33.6
Q ss_pred CCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 29 SYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 29 ~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
.+..|.+.++|....+.|. ..|.+..++|.|.|+.||...
T Consensus 180 ~~~~C~~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~~~ 219 (224)
T cd01475 180 QGKICVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGYALL 219 (224)
T ss_pred ccccCcCchhhcCCCCCcc--ceEEcCCCCEEeECCCCccCC
Confidence 3678988899987667775 789999999999999999754
No 21
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=96.92 E-value=0.0018 Score=26.51 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=18.0
Q ss_pred cccccCCcceeecCCCCC-CCCC
Q psy9821 12 AVAARHNISVYEEDARWS-YSLC 33 (78)
Q Consensus 12 ~~~~~~~~~~c~c~~g~~-~~~C 33 (78)
.|.+..++|.|.|+.||. |..|
T Consensus 16 ~C~~~~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 16 TCVNTVGSYRCECPPGYTDGRNC 38 (39)
T ss_pred EeECCCCCeEeECCCCCccCCcC
Confidence 566778889999999997 7665
No 22
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.87 E-value=0.004 Score=24.65 Aligned_cols=27 Identities=44% Similarity=1.099 Sum_probs=22.1
Q ss_pred CCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 44 HDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 44 ~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
..|.....|.+..+.+.|.|+.+|.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 456656889998899999999999865
No 23
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.45 E-value=0.011 Score=23.67 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=21.1
Q ss_pred CCCCCcccc-cccccCCcceeecCCCCC
Q psy9821 3 CFISDSCAV-AVAARHNISVYEEDARWS 29 (78)
Q Consensus 3 c~~~~~C~~-~~~~~~~~~~c~c~~g~~ 29 (78)
|..+..|.+ .|.+..+.+.|.|++||.
T Consensus 2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~ 29 (35)
T smart00181 2 CASGGPCSNGTCINTPGSYTCSCPPGYT 29 (35)
T ss_pred CCCcCCCCCCEEECCCCCeEeECCCCCc
Confidence 444356877 788888999999999984
No 24
>KOG1217|consensus
Probab=96.19 E-value=0.014 Score=35.86 Aligned_cols=58 Identities=29% Similarity=0.589 Sum_probs=45.1
Q ss_pred ccccCCcceeecCCCCCCCC---CCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821 13 VAARHNISVYEEDARWSYSL---CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71 (78)
Q Consensus 13 ~~~~~~~~~c~c~~g~~~~~---C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~ 71 (78)
+.+..+.+.|++++||.+.. +.++++|....+ |.....|.+..+.+.|.|+.+|.+..
T Consensus 245 c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~ 305 (487)
T KOG1217|consen 245 CVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRL 305 (487)
T ss_pred ccccCCceeeeCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCC
Confidence 44555668999999997664 577888876544 77778999999889999999988654
No 25
>KOG1217|consensus
Probab=96.14 E-value=0.015 Score=35.74 Aligned_cols=54 Identities=28% Similarity=0.525 Sum_probs=44.6
Q ss_pred CCcceeecCCCCCCCCCCCc-ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 17 HNISVYEEDARWSYSLCPDV-DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 17 ~~~~~c~c~~g~~~~~C~~~-~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
...+.|.|..||.+..+... ++|......|.....|.+..+.|.|.|+.+|.+.
T Consensus 149 ~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~ 203 (487)
T KOG1217|consen 149 VGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGS 203 (487)
T ss_pred CCceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCC
Confidence 35788999999998888654 6887666778878899999999999999998754
No 26
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.46 E-value=0.024 Score=22.69 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=11.7
Q ss_pred cceeecCCCCCCCCC
Q psy9821 19 ISVYEEDARWSYSLC 33 (78)
Q Consensus 19 ~~~c~c~~g~~~~~C 33 (78)
...|.|.+||.|..|
T Consensus 18 ~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 18 CGRCVCDSGYTGPDC 32 (32)
T ss_pred CCEEECCCCCcCCCC
Confidence 467889999988765
No 27
>KOG1225|consensus
Probab=93.88 E-value=0.17 Score=32.74 Aligned_cols=41 Identities=29% Similarity=0.678 Sum_probs=21.5
Q ss_pred eeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 21 VYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 21 ~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
.|+|++||.|..|+... | +..|..++.|+ .+ .|.|.+||.+
T Consensus 297 ~CiC~~g~~G~dCs~~~-c---padC~g~G~Ci--~G--~C~C~~Gy~G 337 (525)
T KOG1225|consen 297 ECICNPGYSGKDCSIRR-C---PADCSGHGKCI--DG--ECLCDEGYTG 337 (525)
T ss_pred EeecCCCcccccccccc-C---CccCCCCCccc--CC--ceEeCCCCcC
Confidence 67777777776664332 2 23455555554 11 3555555543
No 28
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.55 E-value=0.061 Score=30.65 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.1
Q ss_pred CCcccccccccCCcceeecCCCCC
Q psy9821 6 SDSCAVAVAARHNISVYEEDARWS 29 (78)
Q Consensus 6 ~~~C~~~~~~~~~~~~c~c~~g~~ 29 (78)
+..|.+.|.+..++|.|.|++||+
T Consensus 194 ~~~c~~~C~~~~g~~~c~c~~g~~ 217 (224)
T cd01475 194 SHVCQQVCISTPGSYLCACTEGYA 217 (224)
T ss_pred CCCccceEEcCCCCEEeECCCCcc
Confidence 346888899999999999999995
No 29
>PHA02887 EGF-like protein; Provisional
Probab=93.25 E-value=0.099 Score=27.23 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=12.5
Q ss_pred CCcceeecCCCCCCCCCCC
Q psy9821 17 HNISVYEEDARWSYSLCPD 35 (78)
Q Consensus 17 ~~~~~c~c~~g~~~~~C~~ 35 (78)
...+.|+|++||.|..|..
T Consensus 105 L~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 105 LDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred CCCceeECCCCcccCCCCc
Confidence 3556677777777777643
No 30
>KOG4260|consensus
Probab=91.78 E-value=0.16 Score=30.42 Aligned_cols=54 Identities=26% Similarity=0.526 Sum_probs=37.3
Q ss_pred ccccccCCcceeecCCCCCCCCCCCcccCCCCCCCC-CCCCEEEeCCCCeEeeCCCCce
Q psy9821 11 VAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDC-HKDAKCTNTHGSYSCQCKRGFH 68 (78)
Q Consensus 11 ~~~~~~~~~~~c~c~~g~~~~~C~~~~~c~~~~~~c-~~~~~C~~~~~~~~c~C~~g~~ 68 (78)
+.|.+..++|.|...+||.+ +.++|..--..| .....|.+..+.++|.|..++.
T Consensus 250 qfCvNteGSf~C~dk~Gy~~----g~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 250 QFCVNTEGSFKCEDKEGYKK----GVDECQFCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred heeecCCCceEecccccccC----ChHHhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence 46788899999999999964 244444211122 2236688999999998887765
No 31
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=91.78 E-value=0.15 Score=27.00 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=17.0
Q ss_pred CCcceeecCCCCCCCCCCCcc
Q psy9821 17 HNISVYEEDARWSYSLCPDVD 37 (78)
Q Consensus 17 ~~~~~c~c~~g~~~~~C~~~~ 37 (78)
...+.|+|..||+|..|+-.+
T Consensus 64 l~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 64 IDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred CCCceeECCCCccccccccee
Confidence 467889999999999996443
No 32
>KOG1225|consensus
Probab=90.72 E-value=0.69 Score=30.11 Aligned_cols=45 Identities=22% Similarity=0.555 Sum_probs=28.0
Q ss_pred CcceeecCCCCCCCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeC
Q psy9821 18 NISVYEEDARWSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70 (78)
Q Consensus 18 ~~~~c~c~~g~~~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~ 70 (78)
..-.|+|++||+|..|.. ..|.. .|..+..++ .+ .|.|..+|.++
T Consensus 263 ~~G~CIC~~Gf~G~dC~e-~~Cp~---~cs~~g~~~--~g--~CiC~~g~~G~ 307 (525)
T KOG1225|consen 263 VEGRCICPPGFTGDDCDE-LVCPV---DCSGGGVCV--DG--ECICNPGYSGK 307 (525)
T ss_pred eCCeEeCCCCCcCCCCCc-ccCCc---ccCCCceec--CC--EeecCCCcccc
Confidence 345688999999888854 23432 244333332 22 68888888865
No 33
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=88.83 E-value=0.24 Score=27.96 Aligned_cols=60 Identities=23% Similarity=0.454 Sum_probs=38.0
Q ss_pred cCCcceeecCCCCC---CCCCCCcccCCC---CCCCCCCCCEEEeCC-----CCeEeeCCCCceeCCCCcee
Q psy9821 16 RHNISVYEEDARWS---YSLCPDVDECGL---GLHDCHKDAKCTNTH-----GSYSCQCKRGFHGDGKTSCT 76 (78)
Q Consensus 16 ~~~~~~c~c~~g~~---~~~C~~~~~c~~---~~~~c~~~~~C~~~~-----~~~~c~C~~g~~~~~~~~c~ 76 (78)
-.+.|-|.|.+||. ...|+...+|.. ..-+|...+.|.+.. ..|.|.|.++|...... |+
T Consensus 16 MSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~v-Cv 86 (197)
T PF06247_consen 16 MSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQGV-CV 86 (197)
T ss_dssp ESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSS-EE
T ss_pred ccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCCe-Ec
Confidence 35678899999993 566766666643 234576668888765 57899999999865443 44
No 34
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=81.93 E-value=1.8 Score=17.98 Aligned_cols=28 Identities=32% Similarity=0.743 Sum_probs=19.0
Q ss_pred CCCCCCEEEeCC-CCeEeeCCCCceeCCC
Q psy9821 45 DCHKDAKCTNTH-GSYSCQCKRGFHGDGK 72 (78)
Q Consensus 45 ~c~~~~~C~~~~-~~~~c~C~~g~~~~~~ 72 (78)
.|+..+.|.+.. |...|.|..||..++.
T Consensus 6 ~cP~NA~C~~~~dG~eecrCllgyk~~~~ 34 (37)
T PF12946_consen 6 KCPANAGCFRYDDGSEECRCLLGYKKVGG 34 (37)
T ss_dssp ---TTEEEEEETTSEEEEEE-TTEEEETT
T ss_pred cCCCCcccEEcCCCCEEEEeeCCccccCC
Confidence 455567888877 8888999999986544
No 35
>KOG1226|consensus
Probab=81.26 E-value=3.9 Score=28.04 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=14.5
Q ss_pred eeecCCCCCCCCCC---CcccCCC
Q psy9821 21 VYEEDARWSYSLCP---DVDECGL 41 (78)
Q Consensus 21 ~c~c~~g~~~~~C~---~~~~c~~ 41 (78)
.|+|.+||+|..|. +.+.|..
T Consensus 567 ~CvC~~GwtG~~C~C~~std~C~~ 590 (783)
T KOG1226|consen 567 RCVCNPGWTGSACNCPLSTDTCES 590 (783)
T ss_pred cEEcCCCCccCCCCCCCCCccccC
Confidence 37889999998873 3444543
No 36
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=80.71 E-value=1.7 Score=17.65 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=9.4
Q ss_pred EeeCCCCceeCCC
Q psy9821 60 SCQCKRGFHGDGK 72 (78)
Q Consensus 60 ~c~C~~g~~~~~~ 72 (78)
+|.|+.||+.++.
T Consensus 19 ~C~CPeGyIlde~ 31 (34)
T PF09064_consen 19 QCFCPEGYILDEG 31 (34)
T ss_pred ceeCCCceEecCC
Confidence 6778888876544
No 37
>smart00051 DSL delta serrate ligand.
Probab=74.68 E-value=2.6 Score=19.47 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=9.0
Q ss_pred eecCCCCCCCCC
Q psy9821 22 YEEDARWSYSLC 33 (78)
Q Consensus 22 c~c~~g~~~~~C 33 (78)
++|.+||+|..|
T Consensus 52 ~~C~~Gw~G~~C 63 (63)
T smart00051 52 KGCLEGWMGPYC 63 (63)
T ss_pred EecCCCCcCCCC
Confidence 568888887665
No 38
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=72.12 E-value=7 Score=19.76 Aligned_cols=31 Identities=29% Similarity=0.762 Sum_probs=21.3
Q ss_pred ccCCCCCCCCCCCCEEEeCCCCeEeeCCCCcee
Q psy9821 37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69 (78)
Q Consensus 37 ~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~ 69 (78)
+.|.. ...|++-+.|. ......|.|.+||..
T Consensus 78 d~Cd~-y~~CG~~g~C~-~~~~~~C~Cl~GF~P 108 (110)
T PF00954_consen 78 DQCDV-YGFCGPNGICN-SNNSPKCSCLPGFEP 108 (110)
T ss_pred cCCCC-ccccCCccEeC-CCCCCceECCCCcCC
Confidence 45553 45788778894 334557999999874
No 39
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=62.74 E-value=6 Score=16.91 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=12.5
Q ss_pred CcceeecCCCCCCCCCC
Q psy9821 18 NISVYEEDARWSYSLCP 34 (78)
Q Consensus 18 ~~~~c~c~~g~~~~~C~ 34 (78)
....|+|+++|.|..|.
T Consensus 16 ~~G~C~C~~~~~G~~C~ 32 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCD 32 (49)
T ss_dssp TCEEESBSTTEESTTS-
T ss_pred CCCEEeccccccCCcCc
Confidence 44567888988888884
No 40
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=53.99 E-value=13 Score=15.75 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=12.9
Q ss_pred cceeecCCCCCCCCCC
Q psy9821 19 ISVYEEDARWSYSLCP 34 (78)
Q Consensus 19 ~~~c~c~~g~~~~~C~ 34 (78)
+..|.|++++.|..|.
T Consensus 17 ~G~C~C~~~~~G~~C~ 32 (46)
T smart00180 17 TGQCECKPNVTGRRCD 32 (46)
T ss_pred CCEEECCCCCCCCCCC
Confidence 4578999999988884
No 41
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=53.44 E-value=13 Score=16.01 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=13.1
Q ss_pred cceeecCCCCCCCCCC
Q psy9821 19 ISVYEEDARWSYSLCP 34 (78)
Q Consensus 19 ~~~c~c~~g~~~~~C~ 34 (78)
...|.|.+++.|..|.
T Consensus 18 ~G~C~C~~~~~G~~C~ 33 (50)
T cd00055 18 TGQCECKPNTTGRRCD 33 (50)
T ss_pred CCEEeCCCcCCCCCCC
Confidence 4568899999998884
No 42
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=49.76 E-value=7 Score=17.69 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.9
Q ss_pred cCCcceeecCCCCCCCCCC
Q psy9821 16 RHNISVYEEDARWSYSLCP 34 (78)
Q Consensus 16 ~~~~~~c~c~~g~~~~~C~ 34 (78)
..+.+.|.|..-|.|..|+
T Consensus 32 ~dG~p~CECn~Cy~GpdCS 50 (56)
T PF04863_consen 32 ADGSPVCECNSCYGGPDCS 50 (56)
T ss_dssp ETTEE--EE-TTEESTTS-
T ss_pred ccCCccccccCCcCCCCcc
Confidence 3566788888888777774
No 43
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=44.31 E-value=8.5 Score=17.77 Aligned_cols=11 Identities=18% Similarity=0.335 Sum_probs=6.5
Q ss_pred ecCCCCCCCCC
Q psy9821 23 EEDARWSYSLC 33 (78)
Q Consensus 23 ~c~~g~~~~~C 33 (78)
+|.+||+|..|
T Consensus 53 ~C~~Gw~G~~C 63 (63)
T PF01414_consen 53 VCLPGWTGPNC 63 (63)
T ss_dssp EE-TTEESTTS
T ss_pred CCCCCCcCCCC
Confidence 46777776654
No 44
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=44.27 E-value=29 Score=14.85 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=18.0
Q ss_pred CCCCCCcccCCCCCCCCCCCCEEEeCCCCeEeeCCCCceeCC
Q psy9821 30 YSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71 (78)
Q Consensus 30 ~~~C~~~~~c~~~~~~c~~~~~C~~~~~~~~c~C~~g~~~~~ 71 (78)
|..|...++|. ....|.+. .|.|+.+|....
T Consensus 19 g~~C~~~~qC~-------~~s~C~~g----~C~C~~g~~~~~ 49 (52)
T PF01683_consen 19 GESCESDEQCI-------GGSVCVNG----RCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCcCCCC-------CcCEEcCC----EeECCCCCEecC
Confidence 45565444444 34556332 688999987543
No 45
>KOG0994|consensus
Probab=41.86 E-value=25 Score=26.05 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=10.6
Q ss_pred eeecCCCCCCCCCC
Q psy9821 21 VYEEDARWSYSLCP 34 (78)
Q Consensus 21 ~c~c~~g~~~~~C~ 34 (78)
-|.|.+||-|+.|.
T Consensus 1085 QCqCkpGfGGR~C~ 1098 (1758)
T KOG0994|consen 1085 QCQCKPGFGGRTCS 1098 (1758)
T ss_pred ceeccCCCCCcchh
Confidence 36788999877774
No 46
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=39.59 E-value=23 Score=18.19 Aligned_cols=30 Identities=20% Similarity=0.710 Sum_probs=17.4
Q ss_pred cCCCCCCCCCCCCEEEeCC-----CCeEeeCCCCc
Q psy9821 38 ECGLGLHDCHKDAKCTNTH-----GSYSCQCKRGF 67 (78)
Q Consensus 38 ~c~~~~~~c~~~~~C~~~~-----~~~~c~C~~g~ 67 (78)
.|......|..++.|.+.. .-|.|.|..-.
T Consensus 7 aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~ 41 (103)
T PF12955_consen 7 ACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTV 41 (103)
T ss_pred HHHHhccCCCCCceEeeccCCCccceEEEEeeccc
Confidence 3444455566667777652 34677776643
No 47
>KOG3514|consensus
Probab=39.53 E-value=25 Score=25.80 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=17.8
Q ss_pred ccccCCcceeecC-CCCCCCCCC
Q psy9821 13 VAARHNISVYEED-ARWSYSLCP 34 (78)
Q Consensus 13 ~~~~~~~~~c~c~-~g~~~~~C~ 34 (78)
|..-+++|+|.|. .+|-|..|.
T Consensus 637 C~egwNrfiCDCs~T~~~G~~Ce 659 (1591)
T KOG3514|consen 637 CSEGWNRFICDCSGTGFEGRTCE 659 (1591)
T ss_pred ccccccccccccccCcccCcccc
Confidence 3467889999996 789888885
No 48
>KOG0196|consensus
Probab=35.99 E-value=68 Score=23.02 Aligned_cols=15 Identities=33% Similarity=0.953 Sum_probs=11.2
Q ss_pred CCCCeEeeCCCCcee
Q psy9821 55 THGSYSCQCKRGFHG 69 (78)
Q Consensus 55 ~~~~~~c~C~~g~~~ 69 (78)
..++..|.|..||.+
T Consensus 304 ~ega~~C~C~~gyyR 318 (996)
T KOG0196|consen 304 SEGATSCTCENGYYR 318 (996)
T ss_pred CCCCCcccccCCccc
Confidence 446667999999864
No 49
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=33.27 E-value=32 Score=14.92 Aligned_cols=16 Identities=25% Similarity=0.852 Sum_probs=11.2
Q ss_pred eeCCCCceeCCCCcee
Q psy9821 61 CQCKRGFHGDGKTSCT 76 (78)
Q Consensus 61 c~C~~g~~~~~~~~c~ 76 (78)
|.|+.||..+....|+
T Consensus 35 C~C~~G~v~~~~~~CV 50 (55)
T PF01826_consen 35 CFCPPGYVRNDNGRCV 50 (55)
T ss_dssp EEETTTEEEETTSEEE
T ss_pred CCCCCCeeEcCCCCEE
Confidence 7789998866554465
No 50
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=20.40 E-value=42 Score=13.94 Aligned_cols=10 Identities=20% Similarity=0.487 Sum_probs=5.0
Q ss_pred CCCCCCCccc
Q psy9821 1 MLCFISDSCA 10 (78)
Q Consensus 1 ~~c~~~~~C~ 10 (78)
++|..+..|+
T Consensus 17 ~~C~~~G~Ce 26 (41)
T PF10588_consen 17 PTCDKNGNCE 26 (41)
T ss_dssp TT-TTGGG-H
T ss_pred cCCCCCCCCH
Confidence 3577777774
Done!