RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9821
(78 letters)
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 58.2 bits (140), Expect = 4e-12
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
C H C A+C + + C+C + G+G+
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ 42
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 54.4 bits (131), Expect = 2e-11
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
C DVDEC G H C C NT GSYSC+C+ G+
Sbjct: 93 CQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131
Score = 42.9 bits (101), Expect = 7e-07
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 33 CPDVDECGL-GLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCTKT 78
C D++EC C K + C NT GSY C C G+ K
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKN 87
Score = 32.1 bits (73), Expect = 0.006
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
D C C +D+ C N + +C+C GF +
Sbjct: 1 DSRGC---ARWCPQDSSCVN---ATACRCNPGFSSFSEI 33
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 46.8 bits (112), Expect = 6e-09
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
C D DEC +G + C N G + C C+ GF +C
Sbjct: 41 CVDTDECSVGNPCGN--GTCKNVIGGFECTCEEGFEPGPMMTC 81
Score = 45.7 bits (109), Expect = 2e-08
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
D+DEC D K +C NT GSY C+C G+ G
Sbjct: 2 AVDMDECKE--PDVCKHGQCINTDGSYRCECPFGYILAGNE 40
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan
syndrome, connective tissue, extracellular matrix,
structural protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1
Length = 86
Score = 45.4 bits (108), Expect = 2e-08
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
D+DEC + C +C NT G + C+C G+
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKN 42
Score = 45.0 bits (107), Expect = 3e-08
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
C D+DEC C C NT GSY C+C G +
Sbjct: 43 CMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISA 84
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 41.9 bits (99), Expect = 6e-07
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
DVDEC L C A C N G + C+C G+ + K+
Sbjct: 2 DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLKSKS 41
Score = 33.4 bits (77), Expect = 0.001
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQC--KRGF--HGDGKT 73
C D+DEC + C C N G Y+C C K+GF D K+
Sbjct: 42 CEDIDECSE--NMC--AQLCVNYPGGYTCYCDGKKGFKLAQDQKS 82
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 42.7 bits (101), Expect = 7e-07
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
C D+DEC + C + C NT GS+ CQC G D
Sbjct: 104 CEDIDECEVFPGVCK-NGLCVNTRGSFKCQCPSGMTLDA 141
Score = 35.0 bits (81), Expect = 6e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
D+DEC + C N+ GS+ C+C D
Sbjct: 3 DIDEC---ESSPCINGVCKNSPGSFICECSSESTLDP 36
Score = 30.8 bits (70), Expect = 0.022
Identities = 7/51 (13%), Positives = 12/51 (23%), Gaps = 3/51 (5%)
Query: 29 SYSLCPDVDECGLGLHDCHKD---AKCTNTHGSYSCQCKRGFHGDGKTSCT 76
+++ L C T C +G+ T C
Sbjct: 55 DGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCE 105
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 42.0 bits (99), Expect = 2e-06
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
D+DEC C KC NT GS+ C+C G++ +
Sbjct: 119 LEDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNE 156
Score = 40.8 bits (96), Expect = 4e-06
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
DV+EC C NT GSY C C F +
Sbjct: 2 DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNP 36
Score = 39.7 bits (93), Expect = 1e-05
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
C D +C+ D + +G +C + G + C
Sbjct: 41 CVDTRSG-----NCYLDIRPRGDNGDTACSNEIGVGVSKASCC 78
Score = 34.6 bits (80), Expect = 8e-04
Identities = 5/39 (12%), Positives = 9/39 (23%), Gaps = 2/39 (5%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
C + + C + C GF +
Sbjct: 78 CCSLGKAWG--TPCEMCPAVNTSEYKILCPGGEGFRPNP 114
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 42.3 bits (99), Expect = 3e-06
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 24 EDARWSYSLCPDVDECGLGLHDCHKDAKCTN----THGSYSCQCKRGFHGDGKTSCT 76
E A+ +C + C H+CHK A+C + Y C+C+ G+ GDG
Sbjct: 90 EAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGE 146
Score = 40.4 bits (94), Expect = 1e-05
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 33 CPDVDECGLGLHDCH---KDAKCTNTHGSYSC-QCKRGFHGDG 71
C D+DEC L C K +C NT + C C + G+
Sbjct: 41 CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQ 83
Score = 33.8 bits (77), Expect = 0.002
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 35 DVDECGLGLHDCHKDAKCTNT-HGSYSCQ-CKRGFHGDGKTSCT 76
D D C + C A+C++ GS+SC C GF G+G T C
Sbjct: 2 DPDGCLS--NPCFPGAQCSSFPDGSWSCGFCPVGFLGNG-THCE 42
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 38.7 bits (91), Expect = 2e-05
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
DVDEC LG + C KC NT GS+ CQC +G+ G
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39
Score = 30.3 bits (69), Expect = 0.027
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
DV+EC + C DA C + G + C C G+ G
Sbjct: 44 DVNECVS--NPCQNDATCLDQIGEFQCICMPGYEGV 77
Score = 29.9 bits (68), Expect = 0.040
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
+ DEC C + +C + + C+C GF G
Sbjct: 82 NTDECAS--SPCLHNGRCLDKINEFQCECPTGFTGH 115
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 38.1 bits (89), Expect = 3e-05
Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
+EC C C + Y C C GF + C
Sbjct: 26 AMGTNECLDNNGGC--SYVCNDLKIGYECLCPDGFQLVAQRRCE 67
Score = 34.6 bits (80), Expect = 5e-04
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
C D+DEC C C N G Y CQC+ GF K
Sbjct: 66 CEDIDECQDP-DTC--SQLCVNLEGGYKCQCEEGFQLDPHTKA 105
Score = 27.7 bits (62), Expect = 0.18
Identities = 2/20 (10%), Positives = 4/20 (20%)
Query: 52 CTNTHGSYSCQCKRGFHGDG 71
+ Y + G
Sbjct: 6 HHHPMSDYDIPTTENLYFQG 25
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB:
1z27_A 1z3g_A
Length = 186
Score = 37.3 bits (85), Expect = 1e-04
Identities = 4/42 (9%), Positives = 13/42 (30%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
+ + + + + + + C C G + +C
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCE 42
Score = 32.3 bits (72), Expect = 0.008
Identities = 13/38 (34%), Positives = 14/38 (36%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
C E L + C N G Y CQC GF D
Sbjct: 134 CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 33.6 bits (77), Expect = 5e-04
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 35 DVDECGLGLHDCHKDAK------CTNTHGSYSCQCKRGF--HGDGKT 73
D+DEC +D + C N G Y C C+ G+ D +
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS 49
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 34.7 bits (80), Expect = 6e-04
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
C D+DEC G C C N G++ C C G+
Sbjct: 77 CTDIDECENG-GFC--SGVCHNLPGTFECICGPDSALAGQIGTD 117
Score = 31.2 bits (71), Expect = 0.011
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
C DC + + SC+C G+ D CT
Sbjct: 42 CQMFCNQTACPADC-------DPNTQASCECPEGYILDDGFICT 78
Score = 28.9 bits (65), Expect = 0.072
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 35 DVDECGLGLHDCHKDAKCTN-THGSYSCQCKRGFHGDGKTSCT 76
VD C + + +C SY C C GF
Sbjct: 3 PVDPC----FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHR 41
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 34.7 bits (79), Expect = 0.001
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH--GDGKT 73
+ C + C KC G+ C C G+ DG+T
Sbjct: 2 GEENCNVNNGGC--AQKCQMIRGAVQCTCHTGYRLTEDGRT 40
Score = 26.3 bits (57), Expect = 1.2
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 52 CTNTHGSYSCQCKRGFHGDGKTSCTK 77
C + +Y+C C GF +C +
Sbjct: 361 CLPSGQNYTCACPTGFRKINSHACAQ 386
Score = 25.1 bits (54), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
C DV+EC C CTN+ G++ C C+ G+
Sbjct: 41 CQDVNEC-AEEGYC--SQGCTNSEGAFQCWCEAGYELRP 76
>3p5b_L Low density lipoprotein receptor variant; B-propellor,
convertase, hydrolase-lipid binding P complex; 3.30A
{Homo sapiens} PDB: 3p5c_L
Length = 400
Score = 34.0 bits (77), Expect = 0.002
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSCT 76
+EC C C + Y C C GF + C
Sbjct: 1 NECLDNNGGC--SHVCNDLKIGYECLCPDGFQLVAQRRCE 38
Score = 27.9 bits (61), Expect = 0.31
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 28 WSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
+ C D+DEC C N G Y CQC+ GF D T
Sbjct: 32 VAQRRCEDIDEC---QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 76
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 32.4 bits (74), Expect = 0.004
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
C + C C + GS+SC C+ G+ G
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR 46
Score = 27.8 bits (62), Expect = 0.24
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
+V L + C G C C G+
Sbjct: 51 EVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLG 86
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 30.3 bits (69), Expect = 0.028
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C C KC + G Y+C C GF G
Sbjct: 39 YKDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGFEGK 74
Score = 25.3 bits (56), Expect = 1.5
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
D C S C C RG+
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTLA 113
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 30.4 bits (69), Expect = 0.029
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C C C + SY C C F G
Sbjct: 44 YSDGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFEGR 79
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 30.0 bits (68), Expect = 0.043
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C + C C + SY C C+ GF G
Sbjct: 47 DGDQCEP--NPCLNGGLCKDDINSYECWCQVGFEGK 80
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 30.1 bits (68), Expect = 0.045
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C C KC + G Y+C C GF G
Sbjct: 39 YKDGDQCET--SPCQNQGKCKDGLGEYTCTCLEGFEGK 74
Score = 24.7 bits (54), Expect = 3.3
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
D C S C C RG+
Sbjct: 89 GDCDQFCHEEQNSVVCSCARGYTLA 113
Score = 24.3 bits (53), Expect = 4.6
Identities = 5/28 (17%), Positives = 5/28 (17%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
C K G D T
Sbjct: 127 CGKQTLERRKRSVAQATSSSGEAPDSIT 154
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 28.2 bits (64), Expect = 0.048
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C + C C + SY C C GF G
Sbjct: 2 DGDQCES--NPCLNGGSCKDDINSYECWCPFGFEGK 35
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 29.9 bits (67), Expect = 0.063
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 33 CPDVDECGLGLHD-CHKDAKCTNTH-GSYSCQCKRGFHGDGKTSCT 76
C G CH+ A C GS SC C G+ G+G
Sbjct: 15 NSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILCGR 60
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 29.3 bits (66), Expect = 0.074
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C +C T +Y+C+C GF G
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSGL 151
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism,
structural genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 28.1 bits (62), Expect = 0.088
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSC 61
DV+EC C + KC N +G Y C
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLC 28
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 29.2 bits (65), Expect = 0.10
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C C +SC C
Sbjct: 193 CSNQGVCLQQWDGFSCDCSMTSFS 216
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 28.7 bits (64), Expect = 0.12
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 30 YSLCPDVDECGLGLHDCH-KDAKCTNTHGSYSCQCKRGF--HGDGKT 73
+ D+DEC + + D C N G + C C+ G+ H + +T
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 164
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding;
HET: NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 28.7 bits (63), Expect = 0.15
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 51 KCTNTHGSYSCQCKRGFHGDGKTSC 75
CTN+ G++ C C+ G+
Sbjct: 13 GCTNSEGAFQCWCEAGYELRPDRRS 37
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 28.1 bits (63), Expect = 0.17
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
+++EC + C CT+ +YSC+C F G
Sbjct: 96 NINECEV--EPCKNGGICTDLVANYSCECPGEFMGR 129
Score = 24.3 bits (53), Expect = 4.1
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 46 CHKDAKCTN--THGSYSCQCKRGFHGD 70
C C GS+SC+C GF
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDP 34
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 28.1 bits (63), Expect = 0.20
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
C C + C ++ Y+C C G+ G
Sbjct: 4 GGSPCISQP--CLHNGSCQDSIWGYTCTCSPGYEGS 37
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 27.9 bits (62), Expect = 0.23
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 28 WSYSLCPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFH-GDGKTSCT 76
+Y + D++EC D C N G Y C C + D +C
Sbjct: 109 AAYYVATDINECT-DFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.30
Identities = 13/92 (14%), Positives = 20/92 (21%), Gaps = 37/92 (40%)
Query: 17 HNISVYEEDAR---------W----------------SYSLCP-DVDECGLGLHDCHKDA 50
+SV+ A W YSL E + + + +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 51 KCTNT-----H----GSYSCQCKRGFHGDGKT 73
K H Y + F D
Sbjct: 436 KVKLENEYALHRSIVDHY--NIPKTFDSDDLI 465
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.9 bits (61), Expect = 0.35
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKR-GFHG 69
C +E G+ C C+ C C R GF G
Sbjct: 187 CEAGEEGEGGV--CLNGGVCSVVDDQAVCDCSRTGFRG 222
Score = 26.3 bits (57), Expect = 1.1
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHG 69
C C +SC C
Sbjct: 1025 CSNQGVCLQQWDGFSCDCSMTSFS 1048
Score = 24.8 bits (53), Expect = 3.2
Identities = 6/37 (16%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHG 69
C + C + C + Y C C +
Sbjct: 616 RETAKPCLS--NPCKNNGMCRDGWNRYVCDCSGTGYL 650
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 26.7 bits (59), Expect = 0.59
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 44 HDCHKDAKCTNTHGSYSCQCKRGFHGD 70
C K +C T G+Y+C C GF+G
Sbjct: 125 MSCSKQGECLETIGNYTCSCYPGFYGP 151
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel,
alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus
solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A*
3vgh_A* 3vgg_A* 1eha_A
Length = 558
Score = 26.9 bits (60), Expect = 0.60
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 10 AVAVAARHNISVYEEDARWSYSLCPDVDECGLGLH 44
A V + I + E D + P ++CG +
Sbjct: 270 ADVVHKYNRIVIAESDLNDPRVVNP-KEKCGYNID 303
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 26.7 bits (59), Expect = 0.63
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C +C +Y+C C G++G
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGP 151
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted,
protease, hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 25.0 bits (55), Expect = 1.0
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C S C C RG+ +GK
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKA 38
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.0 bits (55), Expect = 1.1
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C C C G+ D K+
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKS 35
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 25.9 bits (56), Expect = 1.4
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 1 MLCFISDSCAVAVAARHNISVYEEDARWSYSLCPDVDECGLGLHDCHKD--AKCTNTHGS 58
M C + V + + YE+ + P + C + + G+
Sbjct: 250 MHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGA 309
Query: 59 YSCQCKRGF 67
SC+C+ GF
Sbjct: 310 TSCECEEGF 318
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 24.6 bits (54), Expect = 3.4
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTH-GSYSCQCKRGFHGD 70
D++ CG C C+NT Y C C G+ G
Sbjct: 130 DLNYCGTH-QPCLNGGTCSNTGPDKYQCSCPEGYSGP 165
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 23.9 bits (51), Expect = 4.6
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 45 DCHKDAKCTNTH-GSYSCQCKRGFHGDGKTSCTKT 78
+ ++A C G+ +C GF G +
Sbjct: 17 NVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPAS 51
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 24.0 bits (52), Expect = 5.2
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 52 CTNTHGSYSCQCKRGFHGDGKTSC 75
+ H S RG H C
Sbjct: 4 SHHHHHHSSGLVPRGSHMRLCHPC 27
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 24.1 bits (51), Expect = 5.7
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 38 ECGLGLHDCHKDAKCTNTHGSYS---CQCKRGFHGD 70
+C +C N +G++ C+C G+ G
Sbjct: 434 DCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGS 469
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 23.5 bits (51), Expect = 8.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 42 GLHDCHKDAK------CTNTHGSYSCQCKRGFH-GDGKTSC 75
++CH + C SY+C C +G+ G+ C
Sbjct: 1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 23.6 bits (50), Expect = 9.2
Identities = 8/24 (33%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGFH--GDGKT 73
C C C GF D KT
Sbjct: 592 CLYRPQGLRCACPIGFELISDMKT 615
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.464
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,221,732
Number of extensions: 59221
Number of successful extensions: 432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 200
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)