RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9821
(78 letters)
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 45.6 bits (108), Expect = 3e-09
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 39 CGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
C H C A+C + + C+C + G+G+
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ 36
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 42.0 bits (99), Expect = 8e-08
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
DVDEC LG + C KC NT GS+ CQC +G+ G
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 40.5 bits (95), Expect = 3e-07
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 33 CPDVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
D+DEC H +C NT GSY C+C G+ G
Sbjct: 2 AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNE 40
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 39.4 bits (92), Expect = 8e-07
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKT 73
D+DEC + C +C NT G + C+C G+
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMM 39
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 36.3 bits (84), Expect = 1e-05
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
D+DEC C KC NT GS+ C+C G+ + D +
Sbjct: 2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTRV 41
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.5 bits (84), Expect = 1e-05
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 35 DVDECGLGLHDCHKDAK------CTNTHGSYSCQCKRGF--HGDGKT 73
D+DEC +D + C N G Y C C+ G+ D +
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS 49
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 35.6 bits (82), Expect = 3e-05
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
D+DEC C C NT GSY C+C G +
Sbjct: 1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISA 40
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 33.7 bits (77), Expect = 1e-04
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDG 71
DV+EC C NT GSY C C F +
Sbjct: 2 DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNP 36
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 32.4 bits (74), Expect = 3e-04
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTS 74
D+DEC G C C N G++ C C G+
Sbjct: 1 DIDECENG-GFCS--GVCHNLPGTFECICGPDSALAGQIG 37
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 32.2 bits (73), Expect = 6e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 36 VDECGLGLHDCHK-DAKCTNTHGSYSCQCKRGF--HGDGKT 73
+DEC + + D C N G + C C+ G+ H + +T
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 41
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 32.2 bits (73), Expect = 6e-04
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 36 VDECGLGLHDCHK-DAKCTNTHGSYSCQCKRGF--HGDGKT 73
VDEC L D D C N G Y C C+ G+ H + T
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHT 41
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 31.2 bits (71), Expect = 0.001
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C + C C + SY C C GF G
Sbjct: 2 DGDQCES--NPCLNGGSCKDDINSYECWCPFGFEGK 35
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 31.3 bits (71), Expect = 0.001
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGDGKTSC 75
+EC C C + Y C C GF + C
Sbjct: 2 TNECLDNNGGC--SHVCNDLKIGYECLCPDGFQLVAQRRC 39
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 30.9 bits (70), Expect = 0.002
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
+DEC C N G Y CQC+ GF K
Sbjct: 1 IDEC---QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 37
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 30.0 bits (68), Expect = 0.003
Identities = 11/36 (30%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 35 DVDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
D D+C C C + SY C C F G
Sbjct: 1 DGDQCAS--SPCQNGGSCKDQLQSYICFCLPAFEGR 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 28.5 bits (64), Expect = 0.013
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 36 VDECGLGLHDCHKDAKCTNTHGSYSCQCKRGFHGD 70
V+EC + C DA C + G + C C G+ G
Sbjct: 1 VNECVS--NPCQNDATCLDQIGEFQCICMPGYEGV 33
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 27.3 bits (61), Expect = 0.033
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C KC + G Y+C C GF G
Sbjct: 8 CQNQGKCKDGLGEYTCTCLEGFEGK 32
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 27.1 bits (60), Expect = 0.054
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C K +C T G+Y+C C GF+G
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYGP 33
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 26.7 bits (59), Expect = 0.059
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C +C T +Y+C+C GF G
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSGL 33
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 26.6 bits (59), Expect = 0.068
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 46 CHKDAKCTNTHGSYSCQCKRGFHGD 70
C + +C + + C+C GF G
Sbjct: 8 CLHNGRCLDKINEFQCECPTGFTGH 32
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human
(Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 25.2 bits (55), Expect = 0.25
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C N G Y C C + H D K
Sbjct: 15 CNNFIGGYFCSCPPEYFLHDDMKN 38
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 25.5 bits (56), Expect = 0.26
Identities = 6/24 (25%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C G C C G+ D
Sbjct: 13 CLEEVGWRRCSCAPGYKLGDDLLQ 36
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos
taurus) [TaxId: 9913]}
Length = 51
Score = 25.2 bits (55), Expect = 0.35
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C C C G+ D K+
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKS 35
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.8 bits (54), Expect = 0.41
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 52 CTNTHGSYSCQCKRGF--HGDGKT 73
C S C C RG+ +GK
Sbjct: 14 CHEEQNSVVCSCARGYTLADNGKA 37
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 24.5 bits (53), Expect = 0.55
Identities = 5/32 (15%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 44 HDCHKDAKCTNTHGSYSCQCKRGF--HGDGKT 73
+ C + ++C C G D ++
Sbjct: 16 YLCLPAPQINPHSPKFTCACPDGMLLARDMRS 47
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 23.7 bits (51), Expect = 2.7
Identities = 5/13 (38%), Positives = 5/13 (38%)
Query: 13 VAARHNISVYEED 25
V AR I Y
Sbjct: 193 VEARWFIDAYARR 205
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 22.1 bits (47), Expect = 5.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 52 CTNTHGSYSCQCKRGFHGD 70
C + GS+SC C+ G+ G
Sbjct: 21 CIDGIGSFSCDCRSGWEGR 39
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 21.8 bits (46), Expect = 7.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 46 CHKDAKCTNTHG--SYSCQCKRGFHGD 70
C C + SY+C C G+ GD
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGD 40
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 21.4 bits (45), Expect = 8.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 37 DECGLGLHDCHKDAKCTNTHGSYSCQCKRGF 67
DEC +G + + C N G + C C+ GF
Sbjct: 2 DECSVG--NPCGNGTCKNVIGGFECTCEEGF 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.464
Gapped
Lambda K H
0.267 0.0525 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,313
Number of extensions: 12810
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 61
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)