BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9822
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 259 QCQCNGHADCAGPDKLDVCL-RCHNHTKGPQCDKCEPLYVGDP------RDNGECVPCSE 311
+C+CNGHA ++ D + C ++T G C+KC P + P EC+PC
Sbjct: 254 RCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCD- 312
Query: 312 YCNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCEDCVE 371
CNG + C F PE L C +C ++T G KCE C E
Sbjct: 313 -CNGRSQECY--------FDPE----------LYRSTGHGGHCTNCRDNTDGAKCERCRE 353
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 259 QCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGECVPCSE 311
+C+CN HA D + C ++T GP C KC+ Y G P G +P +
Sbjct: 296 RCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPK 348
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 210 ECVCGRGYNKSEEGGECV-PVCSQGC-VRGVCSEPDKCQCDFGYVGVNCS 257
+C C +GY +G C PVC GC G C EP+KCQC G+ G +C+
Sbjct: 262 KCKCSKGY----QGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCN 307
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 21/124 (16%)
Query: 259 QCQCNGHAD-CAGPDKLDVCL---RCHNHTKGPQCDKCEPLYVGDP------RDNGECVP 308
+C C+GHAD C D LD C ++T G CD+C P + P EC
Sbjct: 265 RCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQS 324
Query: 309 CSEYCNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCED 368
C+ C+GH C + PE E + D C+ C +HTTG CE
Sbjct: 325 CN--CHGHAYDCY--------YDPEVD-RREASQNQDNVYQGGGVCLDCQHHTTGINCER 373
Query: 369 CVEG 372
C+ G
Sbjct: 374 CLPG 377
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 17/58 (29%)
Query: 260 CQCNGHA-DCAGPDKLD----------------VCLRCHNHTKGPQCDKCEPLYVGDP 300
C C+GHA DC ++D VCL C +HT G C++C P + P
Sbjct: 325 CNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382
>pdb|3AL8|B Chain B, Plexin A2 SEMAPHORIN 6A COMPLEX
pdb|3AL9|A Chain A, Mouse Plexin A2 Extracellular Domain
pdb|3AL9|B Chain B, Mouse Plexin A2 Extracellular Domain
Length = 539
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 93 VLGPHQAPQCP-RSCSAYTQCSTCLRHA--HCGWCALQ 127
V+ Q + P SC YT C CL HCGWCAL
Sbjct: 467 VMSERQVTRVPVESCEQYTTCGECLSSGDPHCGWCALH 504
>pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4
pdb|3OKY|A Chain A, Plexin A2 In Complex With Semaphorin 6a
pdb|4GZA|A Chain A, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|B Chain B, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|C Chain C, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|D Chain D, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|E Chain E, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|F Chain F, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 681
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 93 VLGPHQAPQCP-RSCSAYTQCSTCLRHA--HCGWCALQ 127
V+ Q + P SC YT C CL HCGWCAL
Sbjct: 466 VMSERQVTRVPVESCEQYTTCGECLSSGDPHCGWCALH 503
>pdb|3NJP|A Chain A, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
pdb|3NJP|B Chain B, The Extracellular And Transmembrane Domain Interfaces In
Epidermal Growth Factor Receptor Signaling
Length = 614
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC+ L G+PR +N EC+ C C
Sbjct: 491 CWGPEPRD-CVSCRNVSRGRECVDKCK-LLEGEPREFVENSECIQCHPEC 538
>pdb|1YY9|A Chain A, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 624
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC+ L G+PR +N EC+ C C
Sbjct: 491 CWGPEPRD-CVSCRNVSRGRECVDKCK-LLEGEPREFVENSECIQCHPEC 538
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 224 GECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
+C P C G GVC P+KC C GY+G C
Sbjct: 445 AKCEPACRHG---GVCVRPNKCLCKKGYLGPQC 474
>pdb|1NQL|A Chain A, Structure Of The Extracellular Domain Of Human Epidermal
Growth Factor (egf) Receptor In An Inactive (low Ph)
Complex With Egf
Length = 624
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC+ L G+PR +N EC+ C C
Sbjct: 491 CWGPEPRD-CVSCRNVSRGRECVDKCK-LLEGEPREFVENSECIQCHPEC 538
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 224 GECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
+C P C G GVC P+KC C GY+G C
Sbjct: 445 AKCEPACRHG---GVCVRPNKCLCKKGYLGPQC 474
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 276 VCLRCHNHTKGPQCDKCEPLYVGDP----RDNGECVPCSEYCNGHTGLCINASLASLPFS 331
VC C ++T G C++C+P Y P RD C PC+ C+ P
Sbjct: 344 VCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCT--CD--------------PAG 387
Query: 332 PESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCEDCVEG 372
E+GG + + D A C H G +C+ C EG
Sbjct: 388 SENGGICD--GYTDFSVGLIAGQCRCKLHVEGERCDVCKEG 426
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 224 GECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
+C P C G GVC P+KC C GY+G C
Sbjct: 424 AKCEPACRHG---GVCVRPNKCLCKKGYLGPQC 453
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 224 GECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
+C P C G GVC P+KC C GY+G C
Sbjct: 424 AKCEPACRHG---GVCVRPNKCLCKKGYLGPQC 453
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 224 GECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
+C P C G GVC P+KC C GY+G C
Sbjct: 424 AKCEPACRHG---GVCVRPNKCLCKKGYLGPQC 453
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 1 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 55
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 56 LEGGYKCQCEEGF 68
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 41 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 95
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 96 LEGGYKCQCEEGF 108
>pdb|3QWQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 648
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC L G+PR +N EC+ C C
Sbjct: 515 CWGPEPRD-CVSCRNVSRGRECVDKCN-LLEGEPREFVENSECIQCHPEC 562
>pdb|1IVO|A Chain A, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains.
pdb|1IVO|B Chain B, Crystal Structure Of The Complex Of Human Epidermal Growth
Factor And Receptor Extracellular Domains
Length = 622
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC L G+PR +N EC+ C C
Sbjct: 491 CWGPEPRD-CVSCRNVSRGRECVDKCN-LLEGEPREFVENSECIQCHPEC 538
>pdb|3B2V|A Chain A, Crystal Structure Of The Extracellular Region Of The
Epidermal Growth Factor Receptor In Complex With The Fab
Fragment Of Imc-11f8
Length = 624
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 268 CAGPDKLDVCLRCHNHTKGPQC-DKCEPLYVGDPR---DNGECVPCSEYC 313
C GP+ D C+ C N ++G +C DKC L G+PR +N EC+ C C
Sbjct: 491 CWGPEPRD-CVSCRNVSRGRECVDKCN-LLEGEPREFVENSECIQCHPEC 538
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 313 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 367
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 368 LEGGYKCQCEEGF 380
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 295 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 349
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 350 LEGGYKCQCEEGF 362
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 301 RDNGECVPCSEYCNGHTGLCINASLASLPFSPESGGTSEL 340
+DN +PC+ YC+G GL + +P +GG E+
Sbjct: 240 KDNKRILPCAAYCDGEYGL--DDLFIGVPVKLGAGGVEEV 277
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 30 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 84
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 85 LEGGYKCQCEEGF 97
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 30 NECLDNNGGC---SYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 84
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 85 LEGGYKCQCEEGF 97
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 6 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 60
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 61 LEGGYKCQCEEGF 73
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 3 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 57
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 58 LEGGYKCQCEEGF 70
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYN-----KSEEGGECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + E+ EC CSQ CV
Sbjct: 3 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN-- 57
Query: 239 CSEPDKCQCDFGY 251
KCQC+ G+
Sbjct: 58 LEGGYKCQCEEGF 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.479
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,896,209
Number of Sequences: 62578
Number of extensions: 553317
Number of successful extensions: 1208
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 221
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)