RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9822
(380 letters)
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 65.2 bits (158), Expect = 8e-12
Identities = 37/149 (24%), Positives = 54/149 (36%), Gaps = 24/149 (16%)
Query: 230 CSQGCVRGVCSEPDKCQCDFGYVG-VNCSIQCQCNGHADCAGPDKLD-VCLRCHNHTKGP 287
V +EP + + + +C+CNGHA ++ D + C ++T G
Sbjct: 224 RLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGV 283
Query: 288 QCDKCEPLYVGDPRDNGECVPCSE----YCNGHTGLCINASLASLPFSPESGGTSELAAF 343
C+KC P + P SE CNG + C F PE
Sbjct: 284 DCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECY--------FDPE---------- 325
Query: 344 LDEGPTTRARCMHCGNHTTGPKCEDCVEG 372
L C +C ++T G KCE C E
Sbjct: 326 LYRSTGHGGHCTNCRDNTDGAKCERCREN 354
Score = 41.7 bits (97), Expect = 3e-04
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 259 QCQCNGHADCAGPDKLD--------VCLRCHNHTKGPQCDKCEPLYVGDPRDNGECVPCS 310
C CNG + D C C ++T G +C++C + C P
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEA-CSPA- 367
Query: 311 EYCNGH 316
+ H
Sbjct: 368 -AAHHH 372
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 61.4 bits (148), Expect = 1e-10
Identities = 37/151 (24%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 232 QGCVRGVCSEPDKCQCDFGYVGVNCSI--QCQCNGHADC----AGPDKLDVCLRCHNHTK 285
G + G + Y + SI +C C+GHAD D + C ++T
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 286 GPQCDKCEPLYVGDPRDNGECVPCSE----YCNGHTGLCINASLASLPFSPESGGTSELA 341
G CD+C P + P +E C+GH C E +
Sbjct: 296 GGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYY---------DPEVDRREAS 346
Query: 342 AFLDEGPTTRARCMHCGNHTTGPKCEDCVEG 372
D C+ C +HTTG CE C+ G
Sbjct: 347 QNQDNVYQGGGVCLDCQHHTTGINCERCLPG 377
Score = 39.1 bits (90), Expect = 0.002
Identities = 27/141 (19%), Positives = 38/141 (26%), Gaps = 21/141 (14%)
Query: 182 CPPENECLNDHHTCDPQSEQCVDLADGFEC-VCGRGYNKSEEGGECVPVCSQGCVRGVCS 240
C ++ C C G C C G+N+ + C C
Sbjct: 275 CDAKDPLDPFRLQC-----ACQHNTCGGSCDRCCPGFNQQPWKP-ATTDSANECQSCNCH 328
Query: 241 E-PDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGD 299
C D S VCL C +HT G C++C P +
Sbjct: 329 GHAYDCYYDPEVDRREASQNQDNVYQGG-------GVCLDCQHHTTGINCERCLPGFFRA 381
Query: 300 P----RDNGECVPCSEYCNGH 316
P C P + + H
Sbjct: 382 PDQPLDSPHVCRPAA--AHHH 400
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 53.8 bits (128), Expect = 4e-08
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 13/84 (15%)
Query: 245 CQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDP---- 300
+ + + +C+CN HA+ + + C ++T GP C KC+ +
Sbjct: 255 YKYFYAISNIEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAG 314
Query: 301 -------RDNGECVPCSEYCNGHT 317
C + H
Sbjct: 315 SYLPLPHGSPNACAAAG--SHHHH 336
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 47.5 bits (113), Expect = 8e-07
Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 30/119 (25%)
Query: 260 CQCNGHADCAGPDKLD--VCLRCHNHTKGPQCDKCEPLYVGDPR----DNGECVPCSEYC 313
C C G + CA K VC C T G +C+ C+ Y GDP C PC C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQ--C 58
Query: 314 NGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCEDCVEG 372
N + + + +G C+ C +T G C+ C EG
Sbjct: 59 NDNIDPNAVGN-----CNRLTG-----------------ECLKCIYNTAGFYCDRCKEG 95
Score = 35.2 bits (81), Expect = 0.012
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 32/120 (26%)
Query: 260 CQCNGHADCAGPDKLD----VCLRCHNHTKGPQCDKCEPLYVGDP---RDNGECVPCSEY 312
CQCN + D + CL+C +T G CD+C+ + G+P +C C+
Sbjct: 56 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACA-- 113
Query: 313 CNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCEDCVEG 372
CN + + +S +P +G +C C H +G C C G
Sbjct: 114 CNPYGTVQQQSSC-----NPVTG-----------------QC-QCLPHVSGRDCGTCDPG 150
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 47.9 bits (113), Expect = 3e-06
Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 25/133 (18%)
Query: 246 QCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGE 305
+ + + +C+CN HA D + C ++T GP C KC+ Y G P G
Sbjct: 283 RYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS 342
Query: 306 CVPCSE---------YCNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMH 356
+P + + T +C N EL + G
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDN----------------ELLHCQNGGTCHNNVRCL 386
Query: 357 CGNHTTGPKCEDC 369
C TG CE
Sbjct: 387 CPAAYTGILCEKL 399
Score = 35.2 bits (80), Expect = 0.034
Identities = 18/129 (13%), Positives = 30/129 (23%), Gaps = 5/129 (3%)
Query: 192 HHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVC-SQGCVRGVCSEPD---KCQC 247
C+ + CV C C + G+C + G C
Sbjct: 296 RCKCNLHATVCVYDNSKLTCECEHNT-TGPDCGKCKKNYQGRPWSPGSYLPIPKGAANAC 354
Query: 248 DFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGECV 307
+ ++ H G +V C G C+K G +
Sbjct: 355 IPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQG 414
Query: 308 PCSEYCNGH 316
+ H
Sbjct: 415 APPHGTHHH 423
Score = 31.0 bits (69), Expect = 0.72
Identities = 22/134 (16%), Positives = 34/134 (25%), Gaps = 16/134 (11%)
Query: 149 PESSTCDILFYQTYPDQVIEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDL--- 205
+ FY +V + + V + C +H+T P +C
Sbjct: 276 VDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG 335
Query: 206 -----------ADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGV 254
G C S C G C +C C Y G+
Sbjct: 336 RPWSPGSYLPIPKGAANACIPS-ISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGI 394
Query: 255 NCSIQCQCNGHADC 268
C + +C C
Sbjct: 395 LCE-KLRCEEAGSC 407
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 43.0 bits (100), Expect = 1e-04
Identities = 28/176 (15%), Positives = 51/176 (28%), Gaps = 22/176 (12%)
Query: 155 DILFYQTYPDQVIEVNNNDSFSWNY-VKCPPENECLNDHHTCDPQSEQCVDLADGFE--- 210
+I ++ E+ + W+ + +N + + + + C A G
Sbjct: 111 NITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCP 170
Query: 211 --CVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADC 268
+ G+ + C VC C C+ C C +C N C
Sbjct: 171 ATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLC----------CHSECLGN----C 216
Query: 269 AGPDKLDVCLRCHNHTKGPQC-DKCEP-LYVGDPRDNGECVPCSEYCNGHTGLCIN 322
+ PD C+ C N +C + C P Y C + +
Sbjct: 217 SQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQ 272
Score = 34.9 bits (79), Expect = 0.043
Identities = 32/186 (17%), Positives = 51/186 (27%), Gaps = 22/186 (11%)
Query: 96 PHQAPQCPRSCSAYTQCST----------CLRHAHC-----GWCALQRDTTGGMGVCTEG 140
CP + T C C H+HC C T C
Sbjct: 153 EECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK-SHGCTAEGLCCHSE 211
Query: 141 SLNSPSSGPESSTCDILFYQTYPDQVIEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSE 200
L + S + + C + +E + + +C + C + HH C
Sbjct: 212 CLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR 271
Query: 201 QCVD--LADGFECV--CGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNC 256
Q + +C+ C GY + C P C C + VC + +
Sbjct: 272 QGCHQYVIHNNKCIPECPSGYTMNSSNLLCTP-CLGPCPK-VCHLLEGEKTIDSVTSAQE 329
Query: 257 SIQCQC 262
C
Sbjct: 330 LRGCTV 335
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 42.1 bits (98), Expect = 1e-04
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 184 PENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPD 243
+ C N+ H C +E C D A GF C C Y + G +CV S V G
Sbjct: 4 AQQTCANNRHQCSVHAE-CRDYATGFCCRCVANY--TGNGRQCVAEGSPQRVNGKVK--- 57
Query: 244 KCQCDFGYVGVNCSIQCQC 262
+ G V +
Sbjct: 58 -GRIFVGSSQVPVVFENTD 75
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 41.6 bits (97), Expect = 3e-04
Identities = 31/135 (22%), Positives = 42/135 (31%), Gaps = 33/135 (24%)
Query: 253 GVNCSIQCQCNGHAD---------CAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDP--- 300
+ C C GHA + C ++TKG C+ C Y P
Sbjct: 247 DMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRP 306
Query: 301 ---RDNGECVPCSEYCNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHC 357
R++ C C CN H+ C L SGG C +C
Sbjct: 307 AEGRNSNACKKC--NCNEHSSSCHFDMAVFLATGNVSGG----------------VCDNC 348
Query: 358 GNHTTGPKCEDCVEG 372
++T G CE C
Sbjct: 349 QHNTMGRNCEQCKPF 363
Score = 41.2 bits (96), Expect = 5e-04
Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 13/144 (9%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQC 247
+ D + C+P + +G C ++ G+C C C +
Sbjct: 371 DIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCR--CKLHVEGERCDVCKEGFY 428
Query: 248 DFGYVGVNCSIQCQCNGHADCAGPDKLDVCL---RCHNHTKGPQCDKCEPLYVGDPRDNG 304
D C CN G + D C G +CD+C P + G D
Sbjct: 429 DLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLD 488
Query: 305 ECVPC--------SEYCNGHTGLC 320
C PC + C+ +G C
Sbjct: 489 GCRPCDCDLGGALNNSCSEDSGQC 512
Score = 38.5 bits (89), Expect = 0.003
Identities = 35/187 (18%), Positives = 52/187 (27%), Gaps = 35/187 (18%)
Query: 211 CVCGRGYNKSEEGGECVP---VCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHAD 267
+ G C+ C + D N +C CN H+
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSS 325
Query: 268 CAGPDKL----------DVCLRCHNHTKGPQCDKCEPLYVGDP----RDNGECVPCSEYC 313
D VC C ++T G C++C+P Y P RD C PC+
Sbjct: 326 SCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDP 385
Query: 314 NGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTTRARCMHCGNHTTGPKCEDCVEGK 373
G I +G C H G +C+ C EG
Sbjct: 386 AGSENGGICDGYTDFSVGLIAG------------------QCRCKLHVEGERCDVCKEGF 427
Query: 374 ENRQSRN 380
+ + +
Sbjct: 428 YDLSAED 434
Score = 38.1 bits (88), Expect = 0.004
Identities = 24/148 (16%), Positives = 38/148 (25%), Gaps = 9/148 (6%)
Query: 177 WNYVKCPPENECLNDHHTCDPQSEQCVDL--------ADGFECVCGRGYNKSEEGGECVP 228
V+ C+ H+T E C+D A+G + N +E C
Sbjct: 270 NEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHF 329
Query: 229 VCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQ 288
+ G S C +G NC ++C C G +
Sbjct: 330 DMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSE 389
Query: 289 CDK-CEPLYVGDPRDNGECVPCSEYCNG 315
C+ C + G
Sbjct: 390 NGGICDGYTDFSVGLIAGQCRCKLHVEG 417
Score = 36.2 bits (83), Expect = 0.018
Identities = 32/209 (15%), Positives = 49/209 (23%), Gaps = 13/209 (6%)
Query: 112 CSTCLRHAHCGWCALQRDTTGGMGVCTEGSLNSPS--SGPESSTCDILFYQTYPDQVIEV 169
C + H CA + G G C ++
Sbjct: 251 RGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGR 310
Query: 170 NNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPV 229
N+N KC + H D G C + +C P
Sbjct: 311 NSN-----ACKKCNCNEHSSSCH--FDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPF 363
Query: 230 CSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQC 289
Q R + C G C + RC H +G +C
Sbjct: 364 YFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSV---GLIAGQCRCKLHVEGERC 420
Query: 290 DKCEPLYVGDPRDNGE-CVPCSEYCNGHT 317
D C+ + ++ C C+ G
Sbjct: 421 DVCKEGFYDLSAEDPYGCKSCACNPLGTI 449
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 41.7 bits (97), Expect = 3e-04
Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 185 ENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPV--------CSQGCVR 236
E C ++ C +++C + +C C GY +E+G C V CSQGC
Sbjct: 3 EENCNVNNGGC---AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTN 59
Query: 237 GVCSEPDKCQCDFGYV----GVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKC 292
+ +C C+ GY +C D V +T +
Sbjct: 60 SEGA--FQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 293 EPLYVGDPRDN 303
R
Sbjct: 118 AIALDFHHRRE 128
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 41.2 bits (96), Expect = 4e-04
Identities = 24/129 (18%), Positives = 37/129 (28%), Gaps = 4/129 (3%)
Query: 192 HHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGY 251
C + + + V + + E C E C+CD GY
Sbjct: 395 ATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY 454
Query: 252 VGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGECVPCSE 311
+G NC Q Q + G + D + C +C D + +
Sbjct: 455 IGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLC----HTSDVPGKLIYGQ 510
Query: 312 YCNGHTGLC 320
YC T C
Sbjct: 511 YCECDTINC 519
Score = 30.1 bits (67), Expect = 1.3
Identities = 16/139 (11%), Positives = 30/139 (21%), Gaps = 3/139 (2%)
Query: 187 ECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQ 246
+ L + + +C + + V
Sbjct: 354 DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTD 413
Query: 247 CDFGYVGVNCSIQC--QCNGHADCAGPDKLDVCL-RCHNHTKGPQCDKCEPLYVGDPRDN 303
V C +C Q + C G L+ + RC G C+ +
Sbjct: 414 IVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEG 473
Query: 304 GECVPCSEYCNGHTGLCIN 322
+ G C+
Sbjct: 474 SCRKDNNSIICSGLGDCVC 492
Score = 29.7 bits (66), Expect = 1.7
Identities = 8/59 (13%), Positives = 12/59 (20%), Gaps = 2/59 (3%)
Query: 211 CVCGRGYNKSEEGGECVPVCSQ--GCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHAD 267
+G C + C E D C Y + + D
Sbjct: 610 LKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRYLIYVD 668
Score = 27.8 bits (61), Expect = 7.9
Identities = 27/165 (16%), Positives = 40/165 (24%), Gaps = 34/165 (20%)
Query: 176 SWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGR--------GYNKSEEGGECV 227
S K C D C+ + Q C CG+ G E
Sbjct: 500 SDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTTEG 559
Query: 228 PVCSQGCV---RGVCSEPDKCQCDFGYVGVNCSI----QCQCNGHADCAG---------- 270
+ + RG C + C+C GY C C + CA
Sbjct: 560 CLNPRRVECSGRGRC-RCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFEKGPFG 618
Query: 271 --------PDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGECV 307
+L K + C Y + +D +
Sbjct: 619 KNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQDGMDRY 663
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 40.7 bits (95), Expect = 6e-04
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 210 ECVCGRGYNKSE-EGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCS 257
+C C G+ +C P C G GVC P+KC C GY+G C
Sbjct: 409 KCCCSPGWEGDFCRTAKCEPACRHG---GVCVRPNKCLCKKGYLGPQCE 454
Score = 39.6 bits (92), Expect = 0.001
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 228 PVCSQGCVRGVCSEPDKCQCDFGYVGVNCSI-QCQ--CNGHADCAGPDKLDVCLRCHNHT 284
CS+ C G C+ KC C G+ G C +C+ C C P+K CL C
Sbjct: 393 SECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHGGVCVRPNK---CL-CKKGY 448
Query: 285 KGPQCDKCE 293
GPQC++ +
Sbjct: 449 LGPQCEQVD 457
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 39.5 bits (92), Expect = 0.001
Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 11/96 (11%)
Query: 202 CVDLADGFECVCGRGYNKSE-EGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQC 260
+ + EC C G G C+E C+C G+ G +C
Sbjct: 126 MNSEGNTILKTPQNAIFFKTCQQAECPGGCRNG---GFCNERRICECPDGFHGPHCEKAL 182
Query: 261 ---QCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCE 293
+C C P C+ C G CDK
Sbjct: 183 CTPRCMNGGLCVTP---GFCI-CPPGFYGVNCDKAN 214
Score = 34.8 bits (80), Expect = 0.041
Identities = 22/72 (30%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 207 DGFECVCGRGYNKSEEGGEC-VPVCSQGCV-RGVCSEPDKCQCDFGYVGVNCSIQC---Q 261
C+C G+ G C CS C G C P KC C G G C I
Sbjct: 195 TPGFCICPPGF----YGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQP 250
Query: 262 CNGHADCAGPDK 273
C C G K
Sbjct: 251 CRNGGKCIGKSK 262
Score = 32.9 bits (75), Expect = 0.15
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 207 DGFECVCGRGYNKSEEGGEC-VPVCSQGCV-RGVCSEPDKCQCDFGYVGVNCSIQCQCNG 264
+C C +GY +G C PVC GC G C EP+KCQC G+ G +C+ + + +
Sbjct: 259 GKSKCKCSKGY----QGDLCSKPVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRYEASL 314
Query: 265 HADC 268
Sbjct: 315 IGTK 318
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 37.9 bits (87), Expect = 0.004
Identities = 32/144 (22%), Positives = 46/144 (31%), Gaps = 14/144 (9%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGG-----ECV--PVCSQGCVRGV 238
NECL+++ C S C DL G+EC+C G+ + EC CSQ CV
Sbjct: 1 NECLDNNGGC---SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLE 57
Query: 239 CSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVG 298
KCQC+ G+ C A + + P
Sbjct: 58 GG--YKCQCEEGFQL--DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 113
Query: 299 DPRDNGECVPCSEYCNGHTGLCIN 322
+ E Y + + I
Sbjct: 114 VVALDTEVASNRIYWSDLSQRMIC 137
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 37.0 bits (85), Expect = 0.009
Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 13/117 (11%)
Query: 210 ECVCGRGY-----NKSEEGGECVPVCSQGCV-RGVCSEPDKCQCDFGYVGVNCSIQCQCN 263
+C+C + N + C+ C RG C G G C C
Sbjct: 546 DCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCP 605
Query: 264 GHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDNGECVPCSEYCNGHTGLC 320
C+ C +G D+ RD E V + C
Sbjct: 606 DACTFKK-----ECVECKKFDRGALHDENT--CNRYCRDEIESVKELKDTGKDAVNC 655
Score = 35.4 bits (81), Expect = 0.031
Identities = 40/199 (20%), Positives = 61/199 (30%), Gaps = 22/199 (11%)
Query: 182 CPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGC--VRGVC 239
P + C N + T + +C G +C C + + EC P Q RG C
Sbjct: 442 EPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 240 SEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCD----KCEPL 295
+C C G C+C D + + C H QC C+
Sbjct: 502 -LCGQCVCHSSDFGKITGKYCEC----DDFSCVRYKGEM-CSGHG---QCSCGDCLCDSD 552
Query: 296 YVGD----PRDNGECV-PCSEYCNGHTGLCINASLASLPFSPESGGTSELAAFLDEGPTT 350
+ G C+ C+G G C S + G T E + T
Sbjct: 553 WTGYYCNCTTRTDTCMSSNGLLCSGR-GKCECGSCVCIQPG-SYGDTCEKCPTCPDACTF 610
Query: 351 RARCMHCGNHTTGPKCEDC 369
+ C+ C G ++
Sbjct: 611 KKECVECKKFDRGALHDEN 629
Score = 32.0 bits (72), Expect = 0.42
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 7/117 (5%)
Query: 167 IEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGEC 226
+++ + SFS E + + + F+C C C
Sbjct: 389 LKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRC 448
Query: 227 VPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNH 283
E C+C G++G C + + + C
Sbjct: 449 -------NNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 36.5 bits (83), Expect = 0.016
Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 230 CSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQC 289
C+ C+ + F N C H C+ L+ C + K
Sbjct: 26 CASRCLSLQITR----ISAFFQHFQNNGSLVWCQNHKQCSK--CLEPCKESGDLRKHQCQ 79
Query: 290 DKCEPLYVGDPRDNGECVPCSEY----CNGHTGLCINASLAS 327
CEPL+ P+ + EC+ E+ G C AS
Sbjct: 80 SFCEPLF---PKKSYECLTSCEFLKYILLVKQGDCPAPEKAS 118
Score = 29.9 bits (66), Expect = 1.7
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 9/105 (8%)
Query: 40 CPLRCDQRTDCQDC--LTSSGGEGGWHECRWSSMLNECISPSYEALYCAGGVCGLV---L 94
C RC + G C+ ++C+ P E+ C L
Sbjct: 26 CASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPL 85
Query: 95 GPHQAPQCPRSCSAYTQCSTCLRHAHCGWCALQRDTTGGMGVCTE 139
P ++ +C SC + G C +G C E
Sbjct: 86 FPKKSYECLTSCEFLKY----ILLVKQGDCPAPEKASGFAAACVE 126
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 34.6 bits (80), Expect = 0.016
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKC 245
+EC + + C + F C C C+ C + V +
Sbjct: 5 DECESSP----CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 246 QCDFGYVGVNCSIQCQCNGHADC 268
+ + C + C
Sbjct: 61 NINGATLKSQCCSSLGAAWGSPC 83
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 35.2 bits (80), Expect = 0.031
Identities = 23/168 (13%), Positives = 38/168 (22%), Gaps = 10/168 (5%)
Query: 165 QVIEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGG 224
++ + + + V D E ++
Sbjct: 108 NLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKT 167
Query: 225 ECVPVCSQGCVRGVCSEPDKCQ--CDFGYVGVNCSIQCQCNG---HADCAGPDKLDVCLR 279
C G C CQ C C+ + C +C+ PD C+
Sbjct: 168 NCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVA 227
Query: 280 CHNHTKGPQC-DKCEPLYVGDPRDN----GECVPCSEYCNGHTGLCIN 322
C N +C + C P Y C C +
Sbjct: 228 CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCH 275
Score = 31.4 bits (70), Expect = 0.52
Identities = 23/179 (12%), Positives = 35/179 (19%), Gaps = 18/179 (10%)
Query: 160 QTYPDQVIEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADG----FECVCGR 215
+ V N D CP + + + C
Sbjct: 137 LDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC 196
Query: 216 GYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPD-KL 274
+ G C G C Y+ C C +
Sbjct: 197 KSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNF 256
Query: 275 DVCLRCHNHTKGPQCDKCEPLYVGDPR-------------DNGECVPCSEYCNGHTGLC 320
C H+ K + C + + + N C PC C L
Sbjct: 257 SFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLL 315
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 34.5 bits (78), Expect = 0.048
Identities = 32/170 (18%), Positives = 47/170 (27%), Gaps = 20/170 (11%)
Query: 155 DILFYQTYPDQVIEVNNNDSFSWNY-VKCPPENECLNDHHTCDPQSEQCVDLADGFECVC 213
+IL + N +S W V + D ++C C
Sbjct: 118 EILHGAVRFSNNPALCNVESIQWRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWG 177
Query: 214 GRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDK 273
Q + +C+ QC G + S C A C GP +
Sbjct: 178 ------------AGEENCQKLTKIICA----QQCSGRCRGKSPSDCCHNQCAAGCTGPRE 221
Query: 274 LDVCLRCHNHTKGPQC-DKCEPLYVGDPRDNGECVPCSEYCNGHTGLCIN 322
D CL C C D C PL + +P + E C+
Sbjct: 222 SD-CLVCRKFRDEATCKDTCPPLMLYNP-TTYQMDVNPEGKYSFGATCVK 269
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 32.2 bits (74), Expect = 0.050
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPV-------CSQGCV 235
+EC C C ++ FEC C GY + + C + C+Q CV
Sbjct: 4 DECSLKPSICGTA--VCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQLCV 58
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 34.2 bits (78), Expect = 0.064
Identities = 29/147 (19%), Positives = 45/147 (30%), Gaps = 24/147 (16%)
Query: 172 NDSFSWNYVKCPPENECLNDHHTCDPQSE--QCVDLADGFEC-VCGRGYNKSEEGGECVP 228
F N C +EC C S+ +CV+ GF C C Y V
Sbjct: 31 PVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY--RGNQPVGVG 88
Query: 229 VCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQ 288
+ + + VC + C+ C+ HA+C + +
Sbjct: 89 LEAAKTEKQVCEPENPCKDKTH----------NCHKHAECIYLG---------HFSDPMY 129
Query: 289 CDKCEPLYVGDPRDNGECVPCSEYCNG 315
+C+ Y GD GE + N
Sbjct: 130 KCECQTGYAGDGLICGEDSDLDGWPNL 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.12
Identities = 17/87 (19%), Positives = 23/87 (26%), Gaps = 26/87 (29%)
Query: 278 LRCHNHTKGPQCDKCEPLYVGDPRDNGECVPCS----------------EYCNGHTGLCI 321
+RC+ P P + D +N E VP N H L
Sbjct: 308 VRCYEAY--PNTS-LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH--LPA 362
Query: 322 NASLA-SLPFSPE----SGGTSELAAF 343
+ SL + SG L
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGL 389
Score = 30.0 bits (67), Expect = 1.5
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 34/111 (30%)
Query: 204 DLADGFECVCGRG------YNKSEEG-----------GECVPVCSQGCVRGVCSEPDKCQ 246
+ E V RG + E G G SQ ++ V K
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 247 CDFGYVGV-----NCSIQCQ--CNGHADCAGPDKLDVCLRCHNHTKGPQCD 290
G++ V N Q Q G D + L N K + D
Sbjct: 1838 ---GWL-VEIVNYNVENQ-QYVAAGDL--RALDTVTNVL---NFIKLQKID 1878
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 31.7 bits (72), Expect = 0.18
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVC 230
+EC + H CD + C + + C C G+
Sbjct: 97 DECSSGQHQCDSST-VCFNTVGSYSCRCRPGWKPRHGIPNNQKDT 140
Score = 29.8 bits (67), Expect = 0.75
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 17/110 (15%)
Query: 171 NNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVC 230
++ + C NEC + C + ++CVC GY
Sbjct: 30 FSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNES 89
Query: 231 SQGCV--------RGVCSEPD---------KCQCDFGYVGVNCSIQCQCN 263
C + C C+C G+ + Q +
Sbjct: 90 ENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 30.0 bits (68), Expect = 0.31
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGE-CVPV--CSQ---GCVRGVC 239
+EC C QCV+ FEC C GY + C+ + C + C GVC
Sbjct: 4 DECRISPDLCGRG--QCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 240 SEPD---KCQCDFGY 251
+ +C+C G+
Sbjct: 62 HNTEGSYRCECPPGH 76
Score = 29.2 bits (66), Expect = 0.56
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECV 227
+EC D C C + + C C G+ S C+
Sbjct: 47 DECQRDPLLCRGG--VCHNTEGSYRCECPPGHQLSPNISACI 86
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 31.6 bits (72), Expect = 0.35
Identities = 19/79 (24%), Positives = 21/79 (26%), Gaps = 17/79 (21%)
Query: 201 QCVDLADGFECVCGRGYN-----------KSEEGGECVPVCSQGCVRGVCSEPDKCQCDF 249
C D G+ C C GY E C C G E C C
Sbjct: 18 SCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG------QESYTCSCAQ 71
Query: 250 GYVGVNCSIQCQCNGHADC 268
GY QC + C
Sbjct: 72 GYRLGEDHKQCVPHDQCAC 90
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.0 bits (69), Expect = 0.38
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 201 QCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQC 260
+ + K+ + EC C G G C+E C+C G+ G +C
Sbjct: 126 MNSEGNTILXTPQNAIFFKTCQQAECPGGCRNG---GFCNERRICECPDGFHGPHCE-GT 181
Query: 261 QCNGH 265
+ + H
Sbjct: 182 KHHHH 186
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 30.4 bits (69), Expect = 0.50
Identities = 30/146 (20%), Positives = 42/146 (28%), Gaps = 19/146 (13%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPD-- 243
NECL+ S CV+ + C C + + CV S C + D
Sbjct: 4 NECLDPTTCI---SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 244 --KCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGDP- 300
C + G S C A ++C + C + +P
Sbjct: 61 DTACSNEIGVGVSKASCCCS----LGKAWGTPCEMCPAVNTSEYKILCP-GGEGFRPNPI 115
Query: 301 ----RDNGECVPCSEYCNGHTGLCIN 322
D EC C G CIN
Sbjct: 116 TVILEDIDECQELPGLCQGGK--CIN 139
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGEC 226
+EC C +C++ F+C C GY +E+ C
Sbjct: 123 DECQELPGLCQGG--KCINTFGSFQCRCPTGYYLNEDTRVC 161
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 31.5 bits (70), Expect = 0.51
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 92 LVLGPHQAPQCP-RSCSAYTQCSTCL--RHAHCGWCAL-QRDTTGGMGVCTEGSLNSPSS 147
+ + + +C+ + CS CL HCGWC QR T G V +E N
Sbjct: 406 YLTAGKEVRRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCTFQGDCVHSENLENWLDI 465
Query: 148 GPESSTC 154
+ C
Sbjct: 466 SSGAKKC 472
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 31.2 bits (69), Expect = 0.54
Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 226 CVPVCSQGCV-RGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHT 284
C C G C C CD GY + H++ + + + T
Sbjct: 190 ISEPCPSYCSGHGDCIS-GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLSPLWYKIT 248
Query: 285 KGPQCDKCEPLYVGD 299
G C L G
Sbjct: 249 GGQVGTGCGTLNDGR 263
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 29.6 bits (67), Expect = 0.93
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 205 LADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNG 264
+ C Y C P C + C G++G C+ G
Sbjct: 13 IEGRSAVTCDDYYYGFGCNKFCRPRDDF-FGHYACDQNGNKTCMEGWMGPECNRAICRQG 71
Query: 265 HADCAGPDKLDVCLRCHNHTKGPQCDKCEP 294
+ G KL RC +G CDKC P
Sbjct: 72 CSPKHGSCKLPGDCRCQYGWQGLYCDKCIP 101
Score = 29.6 bits (67), Expect = 1.1
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 207 DGFECVCGRGYNKSEEGGEC-VPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQ-CQCNG 264
+C C G+ +G C + GCV G+C+EP +C C+ + G C C
Sbjct: 81 LPGDCRCQYGW----QGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGT 136
Query: 265 HADC 268
H C
Sbjct: 137 HQPC 140
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 30.6 bits (68), Expect = 0.98
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 10/73 (13%)
Query: 156 ILFYQTYPDQVIEVNNNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGR 215
++ Q ++ N + C S C+ G C C
Sbjct: 556 VIIDQLPDLMGLKATNVHRVIGSNPCAEENGGC----------SHLCLYRPQGLRCACPI 605
Query: 216 GYNKSEEGGECVP 228
G+ + C+
Sbjct: 606 GFELISDMKTCIV 618
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 29.2 bits (66), Expect = 1.1
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 202 CVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPD----KCQCDFGYVGVNCS 257
C D + +EC C G+ + G + C C C GY
Sbjct: 62 CKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ 121
Query: 258 IQC 260
C
Sbjct: 122 KSC 124
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 1.1
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGY---NKSEEGGECVPV-CSQGCVRGVCSE 241
N C N TC+ D G+ C C RG+ + EC C G G+C++
Sbjct: 58 NPCHNGG-TCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNG---GICTD 113
Query: 242 PD---KCQCDFGYVGVNCSIQ---CQCNGH 265
C+C ++G NC + + H
Sbjct: 114 LVANYSCECPGEFMGRNCQYKGGGHHHHHH 143
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling
protein; HET: NAG BMA; 2.99A {Homo sapiens}
Length = 528
Score = 30.4 bits (67), Expect = 1.2
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 60 EGGWHECRWSSMLNECISPSYEALYCAGGVCGLVLGPHQAPQCPRS-CSAYTQCSTCL-- 116
G + + + + S + + V+ + P + C+ + C++CL
Sbjct: 419 PGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVPVASCAQHLDCASCLAH 478
Query: 117 RHAHCGWCALQRDTTGGMGVCTEGSLNSPSSGPE 150
R +CGWC L G C+ S S GPE
Sbjct: 479 RDPYCGWCVLL-------GRCSRRSECSRGQGPE 505
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 30.3 bits (67), Expect = 1.2
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 18/93 (19%)
Query: 230 CSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQC 289
C C P C+CD C ++ C D ++CL K +
Sbjct: 23 CKGRCFELQEVGPPDCRCDN-----------LCKSYSSCC-HDFDELCL------KTARG 64
Query: 290 DKCEPLYVGDPRDNGECVPCSEYCNGHTGLCIN 322
+C G+ R+ CSE C C N
Sbjct: 65 WECTKDRCGEVRNEENACHCSEDCLSRGDCCTN 97
Score = 27.6 bits (60), Expect = 9.0
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 172 NDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCS 231
+ C +N C + C E C+ A G+EC R E C CS
Sbjct: 28 FELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENAC--HCS 85
Query: 232 QGCV-RGVCSE--PDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRC 280
+ C+ RG C C+ + +V +C A P + +
Sbjct: 86 EDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDG 137
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 28.1 bits (63), Expect = 1.7
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 182 CPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGG-----ECVP--VCSQGC 234
NECL+++ C S C DL G+EC+C G+ + EC CSQ C
Sbjct: 26 AMGTNECLDNNGGC---SYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLC 82
Query: 235 VRGVCSEPDKCQCDFGYV 252
V KCQC+ G+
Sbjct: 83 VNLEGGY--KCQCEEGFQ 98
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 29.4 bits (66), Expect = 1.8
Identities = 27/148 (18%), Positives = 36/148 (24%), Gaps = 17/148 (11%)
Query: 180 VKCPPENECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGEC---VPVCSQG--- 233
+KCP + Q + D F C +GY E VC
Sbjct: 1 IKCPQPKTLDEFTIIQNLQPQ--YQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTW 58
Query: 234 ------CVRGVCSEPDKCQC-DFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKG 286
C C +P DF Y + C P R +
Sbjct: 59 HRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQT-RAGSRESE 117
Query: 287 PQCDKCEPLYVGDPRDNGECVP-CSEYC 313
C + GE +P C C
Sbjct: 118 QGVYTCTAQGIWKNEQKGEKIPRCLPVC 145
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein;
HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Length = 539
Score = 29.2 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 92 LVLGPHQAPQCPRS-CSAYTQCSTCL--RHAHCGWCALQ 127
V+ Q + P C YT C CL HCGWCAL
Sbjct: 466 YVMSERQVTRVPVESCEQYTTCGECLSSGDPHCGWCALH 504
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 227 VPVCSQGCV-RGVCSEPDKCQCDFGYVGVNCSIQCQC 262
P C + C G C KC CD GY G C I +
Sbjct: 185 GPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKN 221
Score = 29.2 bits (64), Expect = 3.1
Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 4/93 (4%)
Query: 171 NNDSFSWNYVKCPPENECLNDHHTCDPQSEQCVDLADGF----ECVCGRGYNKSEEGGEC 226
N + ++ + + P A F + + +
Sbjct: 474 NVECSRYHLQRILVSDTFNKWTRITLPLPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYI 533
Query: 227 VPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQ 259
C C C CD + G+ C
Sbjct: 534 GDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEP 566
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 2.5
Identities = 55/409 (13%), Positives = 96/409 (23%), Gaps = 126/409 (30%)
Query: 19 EPRTVKTDANRTNIKLKTGSSCPLRCDQRTD-CQDCLTSSGGEG-------------GWH 64
P+++ + +I + + + T L S E +
Sbjct: 41 MPKSILSKEEIDHI-IMSKDA-----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF- 93
Query: 65 ECRWSSMLNECISPS-----YEALYCAGGVC--GLVLGPHQAPQCPRSCSAYTQCSTCLR 117
S + E PS Y + V + + + Q LR
Sbjct: 94 --LMSPIKTEQRQPSMMTRMYI--EQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELR 148
Query: 118 HAHCGWCALQRDTTGGMGVCTEGSLNSPSSGPESSTCDILFYQTYPDQVIEVNNNDSFSW 177
A + G+ G SG T + ++ + W
Sbjct: 149 PA--KNVLID-----GVL----G------SG---KTW--VALDVCLSYKVQCKMDFKIFW 186
Query: 178 -NYVKCPPENECL----NDHHTCDPQSEQCVDLADGFECVCG------RGYNKSEEGGEC 226
N C L + DP D + + R KS+ C
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 227 VPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQCQCNGHA------DCAGPDKLDVCLRC 280
+ V + V + K F + C+ D L
Sbjct: 247 LLV-----LLNVQNA--KAWNAFN-------LSCK-----ILLTTRFKQVTDFLSAATTT 287
Query: 281 H----NHTKGPQCDKCEPLYVGDPRDNGECVPCSEYCNGHTGLCINASLASLPFSPESGG 336
H +H+ D+ + L ++ LP E
Sbjct: 288 HISLDHHSMTLTPDEVKSLL---------------------LKYLDCRPQDLP--REVLT 324
Query: 337 TSEL-----AAFLDEGPTTRARCMHCGN---HTTGPKCEDCVEGKENRQ 377
T+ A + +G T H T + +E E R+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 2.7
Identities = 4/13 (30%), Positives = 6/13 (46%), Gaps = 2/13 (15%)
Query: 139 EGSLN--SPSSGP 149
+ SL + S P
Sbjct: 26 QASLKLYADDSAP 38
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural
TIM-barrel fold, putative lactonase; 1.70A {Burkholderia
multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Length = 303
Score = 28.9 bits (64), Expect = 3.1
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 7/91 (7%)
Query: 39 SCPLRCDQRTDCQDCLTSSGGEGGWHECRWSS-----MLNECISPSYEALYCAGGVCGLV 93
LR Q + + G H+ + + + + + L V ++
Sbjct: 82 WEDLRAPQLAERVAEWRGTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVL 141
Query: 94 LGPHQAPQCPRSCSAYTQCSTCLRHAHCGWC 124
+ Q P C+ + L H G
Sbjct: 142 VFERQLPDVQAFCARHDAHWLVL--DHAGKP 170
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 28.9 bits (63), Expect = 3.4
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 96 PHQAPQCPRSCSAYTQCSTCL---RHAHCGWC 124
Q P C + C CL CGWC
Sbjct: 476 VFQVPIQGPGCRHFLTCGRCLRAWHFMGCGWC 507
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 27.6 bits (62), Expect = 4.0
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 18/79 (22%)
Query: 202 CVDLADGFECVCGRGY---NKSEEGGECVPV-CSQGCVRGVCSEPD---KCQCDFGYVGV 254
C+D F+C+C GY + EC C G C + +C+C G+ G
Sbjct: 59 CLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHN---GRCLDKINEFQCECPTGFTGH 115
Query: 255 NCSI--------QCQCNGH 265
C + Q H
Sbjct: 116 LCQVDLHHILDAQKMVWNH 134
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 27.7 bits (62), Expect = 4.3
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 202 CVDLADGFECVCGRGY---NKSEEGGECVPV------CSQGCVRGVCSEPDKCQCDFGYV 252
C D + C C + N + + C Q C ++ C+C GY
Sbjct: 61 CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR-SCRCHEGYS 119
Query: 253 GVNCSIQC 260
+ + C
Sbjct: 120 LLADGVSC 127
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 28.2 bits (62), Expect = 4.7
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 209 FECVCGRGYNKSEEGGECVPVCSQGCVRGVCSEPDKCQCDFGYVGVNCSIQ 259
C+ +N S G GVCS KC C+ ++G +C+
Sbjct: 434 HRCLPVASFNFSTCLSSKEGTICSG--NGVCSNELKCVCNRHWIGSDCNTY 482
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
1wpx_A* 1ysc_A*
Length = 421
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGC----VRGVCSE 241
+ + C E C D + CV Y + + P G +R C
Sbjct: 208 SAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNNAQLA---PYQRTGRNVYDIRKDCEG 264
Query: 242 PDKCQCDFGYV 252
+ C +
Sbjct: 265 GNLCYPTLQDI 275
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 28.1 bits (63), Expect = 6.2
Identities = 11/39 (28%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 276 VCLRCHN-HTKGPQCDKCEPLYVGDPRD--NGECVPCSE 311
C C KG QC+ C P N C C
Sbjct: 142 TCPYCGAEDQKGDQCEVCGRPL--TPEILINPRCAICGR 178
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.9 bits (61), Expect = 6.5
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 6/98 (6%)
Query: 232 QGCVRGVC-SEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPD-KLDVCL---RCHNHTKG 286
+G +R V D G V ++ G AG + + VCL C
Sbjct: 151 KGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ 210
Query: 287 PQCDKCEPLYVGDPRDNGECVPCSEYCNGHTGLCINAS 324
CD + G G C + S
Sbjct: 211 AVCDCSRTGFRGKDCSQ-GKEEYIATFKGSEYFCYDLS 247
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 27.5 bits (62), Expect = 7.3
Identities = 9/32 (28%), Positives = 10/32 (31%), Gaps = 9/32 (28%)
Query: 347 GPTTRARCMHCGNH---------TTGPKCEDC 369
G RC C N PKC+ C
Sbjct: 117 GSLRVVRCTSCNNSFEVESAPKIPPLPKCDKC 148
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 27.7 bits (61), Expect = 8.0
Identities = 21/160 (13%), Positives = 39/160 (24%), Gaps = 13/160 (8%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGY-----NKSEEGGECVPVCSQGCV---RGVC 239
C + L D + C C G+ N++ G P C C +C
Sbjct: 242 CKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC 301
Query: 240 SEPDKCQCDFGYVGVNCSIQCQCNGHADCAGPDKLDVCLRCHNHTKGPQCDKCEPLYVGD 299
C C G+ G+ C + P +D+ ++ +
Sbjct: 302 DRFQGCLCSPGWQGLQCEREGIP-----RMTPKIVDLPDHIEVNSGKFNPICKASGWPLP 356
Query: 300 PRDNGECVPCSEYCNGHTGLCINASLASLPFSPESGGTSE 339
+ V + F+ +
Sbjct: 357 TNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPD 396
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 27.1 bits (59), Expect = 9.2
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPV 229
NEC C S+ C + F+C C GY + C +
Sbjct: 2 NECAE-EGYC---SQGCTNSEGAFQCWCEAGYELRPDRRSCKAL 41
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 26.2 bits (58), Expect = 9.7
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 202 CVDLADGFECVCGRGY---NKSEEGGECVPVCSQGCVRGVCSEPD---KCQCDFGYVGVN 255
C+D F C C G+ E G C E +C C GY +
Sbjct: 28 CIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGD 87
Query: 256 CSIQCQ 261
+QC
Sbjct: 88 DLLQCH 93
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding,
sugar binding protein; 1.50A {Homo sapiens} PDB:
3nv2_A* 3nv3_A* 3nv4_A*
Length = 138
Score = 26.5 bits (58), Expect = 9.8
Identities = 11/57 (19%), Positives = 19/57 (33%)
Query: 22 TVKTDANRTNIKLKTGSSCPLRCDQRTDCQDCLTSSGGEGGWHECRWSSMLNECISP 78
TV A R +I L +G+ + R D + ++ + W S
Sbjct: 29 TVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRKMPFVR 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 26.9 bits (60), Expect = 9.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 308 PCSEYCNGHTGLCINASLASLP 329
PC E T C+ + +P
Sbjct: 2 PCVEVVPNITYQCMELNFYKIP 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.471
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,735,270
Number of extensions: 344154
Number of successful extensions: 2176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1476
Number of HSP's successfully gapped: 426
Length of query: 380
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 285
Effective length of database: 4,049,298
Effective search space: 1154049930
Effective search space used: 1154049930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)