RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9822
(380 letters)
>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 56
Score = 42.2 bits (99), Expect = 3e-06
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 260 CQCNGHADCAGPDKLD----VCLRCHNHTKGPQCDKCEPLYVGDPRDNGECVPC 309
CQCN + D + CL+C +T G CD+C+ + G+P C
Sbjct: 1 CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 36.8 bits (85), Expect = 2e-04
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 260 CQCNGHADCA--GPDKLDVCLRCHNHTKGPQCDKCEPLYVGDPRDN-GECVPC 309
C C G + CA K VC C T G +C+ C+ Y GDP + G C
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 29.1 bits (65), Expect = 0.081
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPV 229
+EC P C + G+ C C GY + C +
Sbjct: 2 DECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 27.9 bits (62), Expect = 0.21
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECV 227
+EC C + GF C C GY C
Sbjct: 2 DECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS 43
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 27.9 bits (62), Expect = 0.23
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECV 227
+EC D C + C + + C C G+ S C+
Sbjct: 3 DECQRDPLLC--RGGVCHNTEGSYRCECPPGHQLSPNISACI 42
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 26.3 bits (58), Expect = 0.75
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGEC 226
+EC C +C++ F+C C GY +E+ C
Sbjct: 4 DECQELPGLCQGG--KCINTFGSFQCRCPTGYYLNEDTRVC 42
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.6 bits (56), Expect = 1.4
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECV 227
NECL+ S CV+ + C C + + CV
Sbjct: 4 NECLDPTTCI---SGNCVNTPGSYICDCPPDFELNPTRVGCV 42
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.8 bits (54), Expect = 3.3
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGC 234
C D+ C + C + + C C RGY ++ G C+P C
Sbjct: 3 CSLDNGDC---DQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC 46
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 24.4 bits (53), Expect = 4.5
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGG 224
+EC C QCV+ FEC C GY
Sbjct: 4 DECRISPDLC--GRGQCVNTPGDFECKCDEGYESGFMMM 40
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.9 bits (52), Expect = 5.0
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGY 217
+EC + C+ +C++ FEC C +GY
Sbjct: 4 DECSLGANPCEHAG-KCINTLGSFECQCLQGY 34
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 24.2 bits (52), Expect = 5.4
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 186 NECLNDHHTCDPQ-----SEQCVDLADGFECVCGRGYNKSEEGGEC 226
+EC + + + C + G+ C C GY E+ C
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 221
Score = 26.3 bits (57), Expect = 5.6
Identities = 7/67 (10%), Positives = 17/67 (25%)
Query: 72 LNECISPSYEALYCAGGVCGLVLGPHQAPQCPRSCSAYTQCSTCLRHAHCGWCALQRDTT 131
L++ + ++A++ GG + P H +
Sbjct: 79 LSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYK 138
Query: 132 GGMGVCT 138
G +
Sbjct: 139 DGTPIVK 145
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 23.5 bits (51), Expect = 6.9
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 186 NECLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGEC 226
+EC + S+ CV+L G++C C G+ C
Sbjct: 2 DECQDPDTC----SQLCVNLEGGYKCQCEEGFQLDPHTKAC 38
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 24.0 bits (52), Expect = 6.9
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGC 234
C D+ C + C + C C GY ++ CV C
Sbjct: 1 CSLDNGGC---DQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFPC 44
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 23.6 bits (51), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVP 228
C N+ H C + +C D A GF C C Y + G +CV
Sbjct: 2 CANNRHQCSVHA-ECRDYATGFCCRCVANY--TGNGRQCVA 39
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 23.6 bits (51), Expect = 7.8
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 188 CLNDHHTCDPQSEQCVDLADGFECVCGRGYNKSEEGGECVPVCSQGCVR 236
C D+ C + C++ C C GY ++ +C P C R
Sbjct: 2 CSLDNGGC---THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGR 47
>d2avue1 e.64.1.1 (E:5-160) Flagellar transcriptional activator FlhC
{Escherichia coli [TaxId: 562]}
Length = 156
Score = 25.5 bits (56), Expect = 8.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 340 LAAFLDEGPTTRARCMHCGNH 360
L F++ G + C CG +
Sbjct: 119 LVRFVESGLLQLSSCNCCGGN 139
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 23.8 bits (51), Expect = 9.7
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 2/25 (8%)
Query: 106 CSAYTQCSTCL--RHAHCGWCALQR 128
C + C C+ R +C W
Sbjct: 2 CGKHGTCEDCVLARDPYCAWSPPTA 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.471
Gapped
Lambda K H
0.267 0.0376 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,498,743
Number of extensions: 79201
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 165
Length of query: 380
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,213,086
Effective search space: 355434198
Effective search space used: 355434198
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)