Query psy9825
Match_columns 280
No_of_seqs 217 out of 705
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:38:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 100.0 1.9E-79 4.1E-84 592.5 20.4 245 35-280 331-580 (628)
2 KOG1277|consensus 100.0 4.7E-72 1E-76 530.6 16.2 237 43-280 309-545 (593)
3 PF02990 EMP70: Endomembrane p 100.0 1.2E-70 2.5E-75 545.2 18.8 228 52-280 286-515 (521)
4 KOG1278|consensus 99.9 4.2E-23 9.1E-28 201.2 6.7 88 1-88 523-619 (628)
5 KOG1277|consensus 99.9 7.9E-23 1.7E-27 195.4 5.7 88 1-88 488-584 (593)
6 PF02990 EMP70: Endomembrane p 99.7 3.6E-18 7.8E-23 170.2 4.9 62 1-62 458-520 (521)
7 PF12670 DUF3792: Protein of u 70.9 15 0.00032 29.6 6.1 65 42-110 18-82 (116)
8 TIGR02973 nitrate_rd_NapE peri 64.7 14 0.00029 24.8 3.8 36 90-125 1-36 (42)
9 PF12823 DUF3817: Domain of un 57.3 6.4 0.00014 30.6 1.5 27 179-205 62-88 (92)
10 TIGR02972 TMAO_torE trimethyla 55.8 18 0.00039 24.8 3.3 36 90-125 6-41 (47)
11 PF06796 NapE: Periplasmic nit 54.3 20 0.00042 25.6 3.4 36 90-125 14-49 (56)
12 PRK09546 zntB zinc transporter 45.2 31 0.00067 32.4 4.3 28 132-159 261-288 (324)
13 PF08055 Trp_leader1: Tryptoph 44.9 11 0.00023 20.4 0.6 9 27-35 5-13 (18)
14 MTH00016 CYTB cytochrome b; Va 41.1 1.1E+02 0.0025 29.7 7.6 146 26-185 73-228 (378)
15 MTH00100 CYTB cytochrome b; Pr 40.6 3.6E+02 0.0077 26.3 12.1 26 25-50 71-96 (379)
16 MTH00119 CYTB cytochrome b; Pr 40.0 2.7E+02 0.0059 27.1 10.0 144 25-183 72-226 (380)
17 PF11877 DUF3397: Protein of u 38.9 1.7E+02 0.0038 23.3 7.2 98 7-108 7-109 (116)
18 MTH00086 CYTB cytochrome b; Pr 35.8 3.2E+02 0.007 26.4 9.7 145 24-184 59-215 (355)
19 MTH00131 CYTB cytochrome b; Pr 35.3 4.3E+02 0.0093 25.7 11.7 26 25-50 71-96 (380)
20 TIGR00383 corA magnesium Mg(2+ 33.3 52 0.0011 30.4 3.8 43 117-159 240-282 (318)
21 PF01544 CorA: CorA-like Mg2+ 33.0 46 0.00099 29.8 3.3 38 123-160 222-259 (292)
22 PRK11085 magnesium/nickel/coba 32.9 73 0.0016 30.2 4.7 44 116-159 237-280 (316)
23 PF09605 Trep_Strep: Hypotheti 26.0 1.4E+02 0.0029 26.0 4.9 27 138-164 158-185 (186)
24 PRK15065 PTS system mannose-sp 24.9 1.1E+02 0.0024 28.3 4.3 85 142-243 149-236 (262)
25 MTH00074 CYTB cytochrome b; Pr 23.3 3.8E+02 0.0083 26.1 7.9 143 25-183 72-226 (380)
26 COG0598 CorA Mg2+ and Co2+ tra 23.2 87 0.0019 29.4 3.4 45 116-160 243-287 (322)
No 1
>KOG1278|consensus
Probab=100.00 E-value=1.9e-79 Score=592.54 Aligned_cols=245 Identities=40% Similarity=0.825 Sum_probs=231.5
Q ss_pred eecchhhHHHHHHHhh-h---hhhhcccc-CCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHHhhhhhhhHHH
Q psy9825 35 SFLAAYSTSFYVYMYS-F---YYFFFKTK-RGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLV 109 (280)
Q Consensus 35 sf~~~g~~~~yif~ys-i---~yg~~s~~-rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~lt~~l~P~~~ 109 (280)
|-+.|.++-++..... + ..|+.+++ ||+++|+++++|+++|.+|||+|+|+||.++|++||+|+++|++++||++
T Consensus 331 sv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGiv 410 (628)
T KOG1278|consen 331 SVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIV 410 (628)
T ss_pred EEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHH
Confidence 4555655555543332 2 46888875 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCCCcccCCCCCCCCCCCccchhhHHH
Q psy9825 110 CATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVII 189 (280)
Q Consensus 110 ~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~ 189 (280)
+++.+++|+++|++|||+|+||+|++.++++|++||+||+++|+++|+| ++++|+|+||||||||||+||||+|+.+.+
T Consensus 411 f~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~k-k~~~e~PvrTNqIpRqIP~q~~y~~~~~~i 489 (628)
T KOG1278|consen 411 FAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFK-KPAIEHPVRTNQIPRQIPEQPWYLNPIPSI 489 (628)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhcc-CCCCCCCcccCCCcccCCCCccccchhhHH
Confidence 9999999999999999999999999999999999999999999999999 778899999999999999999999999999
Q ss_pred hhccccchhhHHHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhheecchhHHHHHH
Q psy9825 190 LLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVY 269 (280)
Q Consensus 190 ~~~G~lPF~~i~vEl~~i~~s~W~~~~y~~~gfL~~~~~il~i~~~~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f 269 (280)
++||++||++||+||+||++|+|.||+||+||||+++++||+++|+|+||++||+|||+||||||||||++||++|+|+|
T Consensus 490 li~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~f 569 (628)
T KOG1278|consen 490 LIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVF 569 (628)
T ss_pred HhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheeeeecC
Q psy9825 270 MYSFYYFFFKT 280 (280)
Q Consensus 270 ~Ysi~y~~~~~ 280 (280)
+||++|+++|.
T Consensus 570 iYsi~Y~~~kL 580 (628)
T KOG1278|consen 570 IYSIFYFFTKL 580 (628)
T ss_pred HHHHhhhheee
Confidence 99999999873
No 2
>KOG1277|consensus
Probab=100.00 E-value=4.7e-72 Score=530.60 Aligned_cols=237 Identities=65% Similarity=1.187 Sum_probs=229.7
Q ss_pred HHHHHHhhhhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy9825 43 SFYVYMYSFYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMY 122 (280)
Q Consensus 43 ~~yif~ysi~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~lt~~l~P~~~~~~~~~lN~i~~~ 122 (280)
++.+++.+ ..|.++++||++.++++++|+++++++||+++.+|.|.||++|.||+++|++++|+++++..+++|+++++
T Consensus 309 ~~~ii~~A-lvg~fy~~rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~ 387 (593)
T KOG1277|consen 309 VLIIIMLA-LVGVFYTERGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIA 387 (593)
T ss_pred HHHHHHHH-HHhhhhccchHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 34445554 56888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCCCcccCCCCCCCCCCCccchhhHHHhhccccchhhHHH
Q psy9825 123 YHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFI 202 (280)
Q Consensus 123 ~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lPF~~i~v 202 (280)
++|++|+||+|++.+.++|++|..||+++|++.|++++++++.|||+|++||+||++|||++|.+.+.+||++||++||+
T Consensus 388 y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfI 467 (593)
T KOG1277|consen 388 YGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFI 467 (593)
T ss_pred hccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhh
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhheecchhHHHHHHHhhheeeeecC
Q psy9825 203 EMYFIFTSFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKT 280 (280)
Q Consensus 203 El~~i~~s~W~~~~y~~~gfL~~~~~il~i~~~~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~ 280 (280)
|++||++|+|.+|+||+|||++++++||+++++||||++||+|||+||||||||||+++||+|+|+++||+|||++||
T Consensus 468 EmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys~yYy~~kt 545 (593)
T KOG1277|consen 468 EMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYSFYYYFFKT 545 (593)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.2e-70 Score=545.21 Aligned_cols=228 Identities=46% Similarity=0.976 Sum_probs=220.8
Q ss_pred hhhhcccc-CCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCcc
Q psy9825 52 YYFFFKTK-RGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHASRAIP 130 (280)
Q Consensus 52 ~yg~~s~~-rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~lt~~l~P~~~~~~~~~lN~i~~~~~ss~a~p 130 (280)
..|+.+++ ||.+.++++++|+++|.+|||+|+|+||+++|++||+++++|++++|++++++++++|+++|.++||+|+|
T Consensus 286 ~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aip 365 (521)
T PF02990_consen 286 ALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIP 365 (521)
T ss_pred HhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45777775 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCC-CCCcccCCCCCCCCCCCccchhhHHHhhccccchhhHHHHHHHHHH
Q psy9825 131 FGTMVAVACICLFIILPLTLVGAVLGRNLSGQQ-DNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFT 209 (280)
Q Consensus 131 f~ti~~l~~lw~~i~~PL~~~G~~~g~~~~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lPF~~i~vEl~~i~~ 209 (280)
|+|++.++++|++|++||+++||++|+| +++. |+|||+|++|||||+||||+++.+.++++|++||+++++|++|+++
T Consensus 366 f~t~~~l~~lw~~v~~PL~~lG~~~g~k-~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~ 444 (521)
T PF02990_consen 366 FGTILFLIALWFFVSIPLTFLGGYFGFK-NPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFS 444 (521)
T ss_pred hHHHHHHHHHHHHHhhhhhhcchhhhcC-ccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 4445 9999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccchhheecchhHHHHHHHhhheeeeecC
Q psy9825 210 SFWAYKIYYVYGFMLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKT 280 (280)
Q Consensus 210 s~W~~~~y~~~gfL~~~~~il~i~~~~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~ 280 (280)
|+|.+|+||+||||++++++++++|+|+||+.||+|||+||||||||||++|||+|+|+|+||+||+++|+
T Consensus 445 s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~ 515 (521)
T PF02990_consen 445 SLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKL 515 (521)
T ss_pred HhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874
No 4
>KOG1278|consensus
Probab=99.88 E-value=4.2e-23 Score=201.19 Aligned_cols=88 Identities=40% Similarity=0.785 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhccccCCCCcceEeeecchhhHHHHHHHhhhhhhhccccC-CchhHHHHHHHh-------
Q psy9825 1 MLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKR-GSLLSTAIFVYA------- 72 (280)
Q Consensus 1 l~~~~~~l~i~~~~~si~~~y~~l~~edy~W~W~sf~~~g~~~~yif~ysi~yg~~s~~r-G~llt~~i~~Y~------- 72 (280)
|+++++||+++|+|+||++||+|||+||||||||||++||++|+|+|+||++|.+++.+. |...++.+++|+
T Consensus 523 LFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~ 602 (628)
T KOG1278|consen 523 LFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLF 602 (628)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999875 999999999998
Q ss_pred -hhcccchhHHHHHHHH
Q psy9825 73 -LTSPVNGYAGGALYSR 88 (280)
Q Consensus 73 -l~~~~aGy~Sa~ly~~ 88 (280)
+..|..||.++..|.+
T Consensus 603 ~l~tGtIGF~a~~~Fv~ 619 (628)
T KOG1278|consen 603 FLLTGTIGFLAAFWFVR 619 (628)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 3688899999988864
No 5
>KOG1277|consensus
Probab=99.87 E-value=7.9e-23 Score=195.41 Aligned_cols=88 Identities=65% Similarity=1.127 Sum_probs=83.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhccccCCCCcceEeeecchhhHHHHHHHhhhhhhhccccC-CchhHHHHHHHh-------
Q psy9825 1 MLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKR-GSLLSTAIFVYA------- 72 (280)
Q Consensus 1 l~~~~~~l~i~~~~~si~~~y~~l~~edy~W~W~sf~~~g~~~~yif~ysi~yg~~s~~r-G~llt~~i~~Y~------- 72 (280)
|+++++||+||++|+||++||||||+||||||||||+.+||+++|+++||.+|+++++++ |.++|..++.|+
T Consensus 488 m~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~l 567 (593)
T KOG1277|consen 488 MFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYAL 567 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhHHHHHhhhccccchhhhhhhhHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999988 999999999998
Q ss_pred -hhcccchhHHHHHHHH
Q psy9825 73 -LTSPVNGYAGGALYSR 88 (280)
Q Consensus 73 -l~~~~aGy~Sa~ly~~ 88 (280)
++++..||+++.+|+|
T Consensus 568 gim~Gtigy~gt~~FVR 584 (593)
T KOG1277|consen 568 GLMCGTIGYVGTLLFVR 584 (593)
T ss_pred HHHHhhHhhhHHHHHHH
Confidence 4799999999998875
No 6
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=99.72 E-value=3.6e-18 Score=170.17 Aligned_cols=62 Identities=52% Similarity=1.000 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhccccCCCCcceEeeecchhhHHHHHHHhhhhhhhccccC-Cc
Q psy9825 1 MLLVFLILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKR-GS 62 (280)
Q Consensus 1 l~~~~~~l~i~~~~~si~~~y~~l~~edy~W~W~sf~~~g~~~~yif~ysi~yg~~s~~r-G~ 62 (280)
|++++++++++|+|+||+.||+|||+||||||||||++||++|+|+|+||++|++.+.++ |.
T Consensus 458 l~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~ 520 (521)
T PF02990_consen 458 LLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGF 520 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeec
Confidence 578899999999999999999999999999999999999999999999999999998876 54
No 7
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=70.95 E-value=15 Score=29.59 Aligned_cols=65 Identities=18% Similarity=0.444 Sum_probs=43.8
Q ss_pred HHHHHHHhhhhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHHhhhhhhhHHHH
Q psy9825 42 TSFYVYMYSFYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLLSACLVPVLVC 110 (280)
Q Consensus 42 ~~~yif~ysi~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~lt~~l~P~~~~ 110 (280)
+.....+.+....+.+.+.+.+.......+.++..++|+.++| +-+.|.|..- ..++.++-.+++
T Consensus 18 tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~---~~~~kG~l~G-~~~Gl~y~~il~ 82 (116)
T PF12670_consen 18 TLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGR---KAGSKGWLHG-LLVGLLYFLILL 82 (116)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHccchHHHH-HHHHHHHHHHHH
Confidence 3344455555555544445778888899999999999999995 5677888863 555555444443
No 8
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=64.74 E-value=14 Score=24.83 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCchhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy9825 90 GGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 125 (280)
Q Consensus 90 ~g~~W~~~~~lt~~l~P~~~~~~~~~lN~i~~~~~s 125 (280)
+.++||...+++..++|.+..+...---+++|..+-
T Consensus 1 k~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 1 KRMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999888888888887653
No 9
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=57.31 E-value=6.4 Score=30.61 Aligned_cols=27 Identities=26% Similarity=0.823 Sum_probs=22.0
Q ss_pred CCccchhhHHHhhccccchhhHHHHHH
Q psy9825 179 KKWFMEPLVIILLGGILPFGSIFIEMY 205 (280)
Q Consensus 179 ~~~y~~~~~~~~~~G~lPF~~i~vEl~ 205 (280)
++|-.+.....+++|++||++.+.|-.
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er~ 88 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFERW 88 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHHH
Confidence 346667778899999999999999853
No 10
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=55.80 E-value=18 Score=24.85 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCchhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy9825 90 GGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 125 (280)
Q Consensus 90 ~g~~W~~~~~lt~~l~P~~~~~~~~~lN~i~~~~~s 125 (280)
+.++||...+++..++|.+..+...---+++|..+-
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999888888888887553
No 11
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=54.29 E-value=20 Score=25.57 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCchhhhHHHhhhhhhhHHHHHHHHHHHHHHHHhcC
Q psy9825 90 GGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHA 125 (280)
Q Consensus 90 ~g~~W~~~~~lt~~l~P~~~~~~~~~lN~i~~~~~s 125 (280)
++++||...+++..++|.+..+...---+++|..+-
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q~ 49 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQI 49 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999888888888886543
No 12
>PRK09546 zntB zinc transporter; Reviewed
Probab=45.19 E-value=31 Score=32.36 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 132 GTMVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 132 ~ti~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
...+.++.++-.+.+|++++.|++|.+.
T Consensus 261 N~~m~~Ltilt~IflPlT~IaGiyGMNf 288 (324)
T PRK09546 261 NRRTYTMSLMAMVFLPTTFLTGLFGVNL 288 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4455566677778889999999999984
No 13
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=44.90 E-value=11 Score=20.40 Aligned_cols=9 Identities=33% Similarity=0.955 Sum_probs=6.6
Q ss_pred CCCcceEee
Q psy9825 27 EDYRWQWTS 35 (280)
Q Consensus 27 edy~W~W~s 35 (280)
+-.||||.+
T Consensus 5 ~~~nwwwta 13 (18)
T PF08055_consen 5 QIQNWWWTA 13 (18)
T ss_pred cccceeeec
Confidence 446899975
No 14
>MTH00016 CYTB cytochrome b; Validated
Probab=41.09 E-value=1.1e+02 Score=29.71 Aligned_cols=146 Identities=14% Similarity=0.309 Sum_probs=76.9
Q ss_pred CCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCC-chhhhHHH
Q psy9825 26 AEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGG-RAWIRHCL 99 (280)
Q Consensus 26 ~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g-~~W~~~~~ 99 (280)
.-|++|.-|+...-|++.+++.+|. ++|+-.+..+.....+..+.-+.....-||+=. .|. ..|.. .+
T Consensus 73 ~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~~~W~~Gv~l~~l~m~~af~GYvLp-----w~q~s~w~a-~v 146 (378)
T MTH00016 73 DVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP-----WGQMSFWGA-TV 146 (378)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHhhHHHHHHHHHHHHhhhccc-----hhhhhHHHH-HH
Confidence 4457999999999999999998875 234444433444444555555555566666432 121 23432 23
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhh----hccCCCCCCCcccCCCCCC
Q psy9825 100 LSACLVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG----RNLSGQQDNPCRVNAVPRP 175 (280)
Q Consensus 100 lt~~l~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g----~~~~~~~~~P~~~n~ipR~ 175 (280)
.|..+-..+..+-. ..-|..+ ...+.-.|+--...+-+ -+|+.+++-... .+ ++..++|-..+.-.++
T Consensus 147 it~l~~~iP~vG~~----l~~~i~G-g~~v~~~TL~Rff~lH~--llP~vil~l~~~Hl~~lh-~~GssnPlg~~~~~~~ 218 (378)
T MTH00016 147 ITNLLSAIPYIGKM----LVQWLWG-GFSVDNATLTRFFALHF--LLPFVIAALSMIHLLFLH-QTGSNNPLGVNSNSDK 218 (378)
T ss_pred HHccchhhccchHH----HHHHhcC-CcCCChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh-hcccCCCCCCCCCCCc
Confidence 33322222222111 1223333 22233345555555663 377777665542 12 3334566655444567
Q ss_pred CCCCCccchh
Q psy9825 176 IPEKKWFMEP 185 (280)
Q Consensus 176 IP~~~~y~~~ 185 (280)
+|-.|++...
T Consensus 219 ipF~P~~~~k 228 (378)
T MTH00016 219 VPFHPYYTSK 228 (378)
T ss_pred cCCccchhHH
Confidence 8888877533
No 15
>MTH00100 CYTB cytochrome b; Provisional
Probab=40.57 E-value=3.6e+02 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.455 Sum_probs=22.0
Q ss_pred cCCCCcceEeeecchhhHHHHHHHhh
Q psy9825 25 NAEDYRWQWTSFLAAYSTSFYVYMYS 50 (280)
Q Consensus 25 ~~edy~W~W~sf~~~g~~~~yif~ys 50 (280)
+..+++|-=|+...-|++.+++.+|.
T Consensus 71 ~~v~~G~~iR~~H~~gas~~~~~~~~ 96 (379)
T MTH00100 71 RDVNYGWIIRYLHANGASMFFICLFL 96 (379)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45558999999999999999998874
No 16
>MTH00119 CYTB cytochrome b; Provisional
Probab=39.98 E-value=2.7e+02 Score=27.09 Aligned_cols=144 Identities=16% Similarity=0.305 Sum_probs=75.1
Q ss_pred cCCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHH
Q psy9825 25 NAEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCL 99 (280)
Q Consensus 25 ~~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~ 99 (280)
+..+++|.-|+...-|++.+++.+|. .+++-.+.+......+..+.-+....+-||+=. ..|+ ..|.. .+
T Consensus 72 ~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~~f~Gy~Lp--w~q~--s~wa~-~v 146 (380)
T MTH00119 72 RDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP--WGQM--SFWGA-TV 146 (380)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhceecccchhhhhhHHHHHHHHHHHHhcccc--hhhh--hhHHH-HH
Confidence 45568999999999999999998775 234444433345555555555555555666433 1111 12322 22
Q ss_pred hhhh--hhhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhh----hccCCCCCCCcccCCCC
Q psy9825 100 LSAC--LVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG----RNLSGQQDNPCRVNAVP 173 (280)
Q Consensus 100 lt~~--l~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g----~~~~~~~~~P~~~n~ip 173 (280)
.+.. .+|. .+-. +-...|+..+ +.=.|+.=...+-+ -+|..+++-... .+ +....+|...++-.
T Consensus 147 ~~~l~~~iP~--iG~~--l~~~~~Gg~~---v~~~tl~Rff~lH~--llP~~i~~l~~~H~~~lh-~~GssnP~g~~~~~ 216 (380)
T MTH00119 147 ITNLLSAIPY--IGQT--LVEWIWGGFS---VDNPTLTRFFALHF--LLPFLIAGLTLIHLLFLH-ETGSNNPLGLNSNT 216 (380)
T ss_pred HHHHHHHhhh--chhh--HHHHhcccCC---CCchHHHHHHHHHH--HHHHHHHHHHHhhhhhhc-ccccCCCCCCCCCC
Confidence 2222 3342 1111 1122333222 22335555555663 377776665442 12 23345676666555
Q ss_pred CCCCCCCccc
Q psy9825 174 RPIPEKKWFM 183 (280)
Q Consensus 174 R~IP~~~~y~ 183 (280)
+++|-.|.+.
T Consensus 217 d~ipF~P~~~ 226 (380)
T MTH00119 217 DKIPFHPYFS 226 (380)
T ss_pred CccCCchHHH
Confidence 6788777653
No 17
>PF11877 DUF3397: Protein of unknown function (DUF3397); InterPro: IPR024515 This family of bacterial proteins is currently functionally uncharacterised.
Probab=38.92 E-value=1.7e+02 Score=23.29 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhhccccCCCCcceEeeecchhhHHHHHHHhhhhhhhccccCCchhHHHHHHHhhhcccchhHHHHHH
Q psy9825 7 ILMIVTVCVTIVCTYFLLNAEDYRWQWTSFLAAYSTSFYVYMYSFYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALY 86 (280)
Q Consensus 7 ~l~i~~~~~si~~~y~~l~~edy~W~W~sf~~~g~~~~yif~ysi~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly 86 (280)
+..+++--++.+..|+ ..-.+.+ | ++.-+-=.+...++.+++....+.-..+..--....+.+.++..+..-.+..
T Consensus 7 ~~i~l~p~~~~iiv~~-~~l~~~~--~-~~~~a~D~~~~fli~~i~~ls~~~~~~s~lpy~~l~~~ll~i~l~~~~~~~~ 82 (116)
T PF11877_consen 7 AFIFLIPFLGFIIVYF-FKLKRRK--K-AFHKAPDVTTPFLIFSIHLLSNNIFGHSFLPYLLLVLLLLAIILAIYQARKK 82 (116)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhh--h-hhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444455566666 3233333 3 6766666677777777766544433344455556666666666666667666
Q ss_pred HHhCCch-----hhhHHHhhhhhhhHH
Q psy9825 87 SRLGGRA-----WIRHCLLSACLVPVL 108 (280)
Q Consensus 87 ~~~~g~~-----W~~~~~lt~~l~P~~ 108 (280)
++++-+| ||..-+++...+-+.
T Consensus 83 ~~i~~~k~~k~~WR~~Fll~~~~Yi~l 109 (116)
T PF11877_consen 83 GEISYKKFFKKFWRLGFLLTFFLYIGL 109 (116)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6665444 777766666555444
No 18
>MTH00086 CYTB cytochrome b; Provisional
Probab=35.77 E-value=3.2e+02 Score=26.41 Aligned_cols=145 Identities=12% Similarity=0.238 Sum_probs=75.7
Q ss_pred ccCCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCC-chhhhH
Q psy9825 24 LNAEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGG-RAWIRH 97 (280)
Q Consensus 24 l~~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g-~~W~~~ 97 (280)
.+..|++|--|+...-|++.+++.+|- ++|+-.+.++.....+..+.-+.....-||+=- .|+ ..|-.
T Consensus 59 ~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~~~~~W~~Gv~l~~l~m~~af~GYvLp-----w~qms~w~~- 132 (355)
T MTH00086 59 MYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV-----WAQMSFWAA- 132 (355)
T ss_pred hCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccCCchHHHHhHHHHHHHHHHHHhhhhcc-----cCchhHHHH-
Confidence 356678999999999999999998874 345554443344444444444445555566322 222 23432
Q ss_pred HHhhhh--hhhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhh----hccCCCCCCCcccCC
Q psy9825 98 CLLSAC--LVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG----RNLSGQQDNPCRVNA 171 (280)
Q Consensus 98 ~~lt~~--l~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g----~~~~~~~~~P~~~n~ 171 (280)
.+.|.. ..|.+- -. +--..|+..+.+.. |+--...+-+ -+|..+++-..- .+ +...++|...+.
T Consensus 133 ~Vitnl~s~iP~iG--~~--l~~~l~Gg~~v~~~---TL~Rff~lH~--llP~~i~~l~~iHl~~lh-~~GssNPlg~~~ 202 (355)
T MTH00086 133 VVITSLLSVIPIWG--PS--IVMWIWGGFGVSSA---TLKFFFVLHF--LLPWGLLVLVLFHLIFLH-STGSTSSLYCHG 202 (355)
T ss_pred HHHHHHHHhccccc--hH--HHHHHhccCCCCCc---chhhHHHHHH--HhHHHHHHHHHHhHHHHh-hcCCCCCCCCCC
Confidence 233322 234211 11 11223443344333 3333344442 366666655431 12 233467776665
Q ss_pred CCCCCCCCCccch
Q psy9825 172 VPRPIPEKKWFME 184 (280)
Q Consensus 172 ipR~IP~~~~y~~ 184 (280)
-.+++|-.|.+..
T Consensus 203 ~~~ki~F~P~~~~ 215 (355)
T MTH00086 203 DYDKICFGPEYWN 215 (355)
T ss_pred CCCCcCCCccHHH
Confidence 5567888887643
No 19
>MTH00131 CYTB cytochrome b; Provisional
Probab=35.32 E-value=4.3e+02 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=21.9
Q ss_pred cCCCCcceEeeecchhhHHHHHHHhh
Q psy9825 25 NAEDYRWQWTSFLAAYSTSFYVYMYS 50 (280)
Q Consensus 25 ~~edy~W~W~sf~~~g~~~~yif~ys 50 (280)
+.-+++|--|+...-|++.+++.+|-
T Consensus 71 ~ev~~G~~iR~~H~~gas~~~~~~~l 96 (380)
T MTH00131 71 RDVNYGWLIRNLHANGASFFFICIYL 96 (380)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44568999999999999999998774
No 20
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.33 E-value=52 Score=30.42 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 117 NFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 117 N~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
+.+.-.+.|-.+.-....+..+.++-.|-.|+++++|++|.+.
T Consensus 240 ~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf 282 (318)
T TIGR00383 240 SSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNF 282 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3333334444444455678899999999999999999999984
No 21
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=33.00 E-value=46 Score=29.82 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=28.2
Q ss_pred hcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q psy9825 123 YHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLS 160 (280)
Q Consensus 123 ~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~~ 160 (280)
+.|..+.--...+..+.++-.|-+|++++.|++|.+.+
T Consensus 222 ~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN~~ 259 (292)
T PF01544_consen 222 YQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMNFK 259 (292)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 33334444667778888888888999999999999843
No 22
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=32.91 E-value=73 Score=30.23 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 116 VNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 116 lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
++...-++.|--+.--..++.++.++-.|-.|++++.|+.|.+.
T Consensus 237 ~~~l~d~~~~~i~~~~N~~mk~lTv~s~if~pptliagiyGMNf 280 (316)
T PRK11085 237 VNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNF 280 (316)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 44445555555556667788999999999999999999999984
No 23
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.03 E-value=1.4e+02 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhcc-CCCCC
Q psy9825 138 ACICLFIILPLTLVGAVLGRNL-SGQQD 164 (280)
Q Consensus 138 ~~lw~~i~~PL~~~G~~~g~~~-~~~~~ 164 (280)
+.+...+.+-.+++|+.+|+|. |+++|
T Consensus 158 ~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 158 LIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344556777889999999983 44443
No 24
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=24.89 E-value=1.1e+02 Score=28.35 Aligned_cols=85 Identities=20% Similarity=0.370 Sum_probs=49.7
Q ss_pred HHHhhhhhhhhhhhhhccCCCCCCCcccCCCCCCCCCCCccchhhHHHhhccccchhhHHHHHHHHHHhhhccc--hhhh
Q psy9825 142 LFIILPLTLVGAVLGRNLSGQQDNPCRVNAVPRPIPEKKWFMEPLVIILLGGILPFGSIFIEMYFIFTSFWAYK--IYYV 219 (280)
Q Consensus 142 ~~i~~PL~~~G~~~g~~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~~~~G~lPF~~i~vEl~~i~~s~W~~~--~y~~ 219 (280)
+...+|-.+++-++|... ++++=..|| +|-++ -.-..+|++|-.=+-+ +++.+|++| .|++
T Consensus 149 ~~~~~~~f~~~~~fG~~~---------v~~~~~~iP--~~v~~--GL~vaggmLPAvGfAm----Ll~~i~~k~~~~ff~ 211 (262)
T PRK15065 149 LRIAIPAALVALAVGTSA---------VQSMLNAIP--EVLTG--GLNIGGGMIVVVGYAM----VINMMATRELMPFFY 211 (262)
T ss_pred HHHHHHHHHHHHHcCHHH---------HHHHHHHCH--HHHHH--HHHHHHhhHHHHHHHH----HHHHHhccchHHHHH
Confidence 334555444456666541 222223444 35544 3467889999875554 455667666 8889
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHH
Q psy9825 220 YGFMLLVFL-ILMIVTVCVTIVCTY 243 (280)
Q Consensus 220 ~gfL~~~~~-il~i~~~~vsI~~tY 243 (280)
-||.+.++. +-.+..+.+.+...+
T Consensus 212 lGFvl~ayl~l~~l~iAiig~~iA~ 236 (262)
T PRK15065 212 LGFVLAAFTNLNLIALGVIGVVLAL 236 (262)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999887 444444544444443
No 25
>MTH00074 CYTB cytochrome b; Provisional
Probab=23.35 E-value=3.8e+02 Score=26.09 Aligned_cols=143 Identities=17% Similarity=0.353 Sum_probs=74.3
Q ss_pred cCCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCC-chhhhHH
Q psy9825 25 NAEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGG-RAWIRHC 98 (280)
Q Consensus 25 ~~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g-~~W~~~~ 98 (280)
+.-+++|--|+...-|++.+++.+|- ++++-.+.++.....+..+.-+.....-||+=- .|+ ..|-. .
T Consensus 72 ~~v~~Gw~~R~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~G~~l~~l~~~~af~Gy~Lp-----w~q~s~w~~-~ 145 (380)
T MTH00074 72 RDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP-----WGQMSFWGA-T 145 (380)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhhHHHHHHHHHHHHHhcccc-----ccccchHHH-H
Confidence 44567999999999999999998874 345544433344444444444444455555432 222 22432 2
Q ss_pred Hhhhhh--hhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhh----hccCCCCCCCcccCCC
Q psy9825 99 LLSACL--VPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG----RNLSGQQDNPCRVNAV 172 (280)
Q Consensus 99 ~lt~~l--~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g----~~~~~~~~~P~~~n~i 172 (280)
+.|..+ .|.+ +-. +-...|+..+ +.-.|+.=...+-+ -+|..+++-... .+ +...++|...+.-
T Consensus 146 v~t~l~~~iP~i--G~~--l~~~~~Gg~~---v~~~tl~Rff~lH~--llP~~il~l~~~H~~~lh-~~gssnP~g~~~~ 215 (380)
T MTH00074 146 VITNLLSAIPYM--GDT--LVQWIWGGFS---VDKATLTRFFAFHF--LLPFLIAGASIIHLLFLH-ETGSNNPTGLNSN 215 (380)
T ss_pred HHHhhhhhcccc--hhh--hhhheeCCcc---cchHHHHHHHHHHH--HHHHHHHHHHHhhhHHhh-ccCCCCCCCCCCC
Confidence 333322 3421 111 1122233222 33345555555663 277766665432 22 3345677666554
Q ss_pred CCCCCCCCccc
Q psy9825 173 PRPIPEKKWFM 183 (280)
Q Consensus 173 pR~IP~~~~y~ 183 (280)
..++|-.|.+.
T Consensus 216 ~~~i~F~P~~~ 226 (380)
T MTH00074 216 PDKVPFHPYFS 226 (380)
T ss_pred CCcccCccHHH
Confidence 56688777664
No 26
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.23 E-value=87 Score=29.42 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q psy9825 116 VNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNLS 160 (280)
Q Consensus 116 lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~~ 160 (280)
+|...-.+.|--..--..++..+.++-.+-.|+|++.|++|.+.+
T Consensus 243 l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~ 287 (322)
T COG0598 243 LSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFK 287 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCC
Confidence 444444444444445567889999999999999999999999843
Done!