Query psy9825
Match_columns 280
No_of_seqs 217 out of 705
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:38:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 33.3 31 0.0011 31.1 3.7 30 130-159 274-303 (339)
2 2iub_A CORA, divalent cation t 24.8 27 0.00093 31.9 1.7 37 123-159 291-327 (363)
3 1j3e_A SEQA protein; protein-D 18.7 27 0.00092 27.3 0.2 13 170-182 68-80 (115)
4 3sk7_A Protein SEQA; sequestra 18.1 29 0.00098 27.2 0.3 12 171-182 70-81 (116)
5 3cx5_C Cytochrome B-C1 complex 17.9 83 0.0028 29.5 3.4 145 25-184 70-227 (385)
6 1pp9_C Cytochrome B; cytochrom 15.9 25 0.00087 32.9 -0.6 143 26-183 72-225 (379)
7 1lgh_A LH II, B800/850, light 15.3 1.3E+02 0.0045 20.4 3.0 26 229-254 21-46 (56)
8 1lrr_A SEQA protein; protein-D 14.7 38 0.0013 27.0 0.2 13 170-182 84-96 (131)
9 1sdi_A ORF-23, hypothetical pr 14.0 73 0.0025 27.4 1.8 22 75-96 170-191 (213)
10 2pv9_C Proteinase-activated re 12.1 66 0.0022 18.4 0.6 15 171-185 6-20 (26)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.30 E-value=31 Score=31.11 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 130 PFGTMVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 130 pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
--..++..+.++-.|-+|++++.|++|.+.
T Consensus 274 ~~N~~mk~LTiit~IflP~T~IaGiyGMNf 303 (339)
T 4ev6_A 274 KMNQIMKILTMVTTIFAVPMWITGIYGMNF 303 (339)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 345677889999999999999999999984
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.83 E-value=27 Score=31.90 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=27.3
Q ss_pred hcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 123 YHASRAIPFGTMVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 123 ~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
+.|..+.--..++..+.+|-.|-+|++++.|++|.+.
T Consensus 291 ~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 291 YLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 3333344456788899999999999999999999984
No 3
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=18.69 E-value=27 Score=27.34 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCcc
Q psy9825 170 NAVPRPIPEKKWF 182 (280)
Q Consensus 170 n~ipR~IP~~~~y 182 (280)
..=|||||+.|++
T Consensus 68 ~tkPK~Ip~TpfW 80 (115)
T 1j3e_A 68 QTKPKHVPGTPYW 80 (115)
T ss_dssp SCCCEECTTSSCE
T ss_pred CCCCCcCCCCCee
Confidence 3458999999965
No 4
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=18.08 E-value=29 Score=27.19 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.6
Q ss_pred CCCCCCCCCCcc
Q psy9825 171 AVPRPIPEKKWF 182 (280)
Q Consensus 171 ~ipR~IP~~~~y 182 (280)
.=|||||+.|+.
T Consensus 70 tkPK~Ip~TpfW 81 (116)
T 3sk7_A 70 TKPKAIPNTPFW 81 (116)
T ss_dssp SCCEECTTSSCE
T ss_pred CCCCcCCCCCee
Confidence 448999999954
No 5
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=17.95 E-value=83 Score=29.47 Aligned_cols=145 Identities=14% Similarity=0.341 Sum_probs=75.1
Q ss_pred cCCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccC--CchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhH
Q psy9825 25 NAEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKR--GSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRH 97 (280)
Q Consensus 25 ~~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~r--G~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~ 97 (280)
+.-||+|-.|+...-|++.+++.+|. ++||-.+..| .....+.++.-+....+-||+=- ..|+ .-|-.
T Consensus 70 ~dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLP--wgQm--S~Wga- 144 (385)
T 3cx5_C 70 RDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCV--YGQM--SHWGA- 144 (385)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHH--CBHH--HHHHH-
T ss_pred hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhcc--CCcc--hhHHH-
Confidence 34468999999999999999998885 3555544222 33333444433344445555422 0111 12321
Q ss_pred HHhhh--hhhhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhh----hhccCCCCCCCcccCC
Q psy9825 98 CLLSA--CLVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVL----GRNLSGQQDNPCRVNA 171 (280)
Q Consensus 98 ~~lt~--~l~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~----g~~~~~~~~~P~~~n~ 171 (280)
.+.|. +..|.+ +- ..+-|..|. .++.=.|+-=...+-+ -+|..+++-.. -.+ +...++|..+|.
T Consensus 145 tViTnLlsaIP~i--G~----~lv~wiwGG-fsV~~~TL~RFf~lHf--llPfii~~lv~iHl~~LH-~~Gs~nPlg~~s 214 (385)
T 3cx5_C 145 TVITNLFSAIPFV--GN----DIVSWLWGG-FSVSNPTIQRFFALHY--LVPFIIAAMVIMHLMALH-IHGSSNPLGITG 214 (385)
T ss_dssp HHHHHGGGGSTTT--HH----HHHHHHHTS-SSSCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHCCCCTTCSCC
T ss_pred HHHHHHHHHhhhc--cH----HHHHhhcCC-cccccchHHHHHHHHH--HHHHHHHHHHHHHHHHHh-hcCCCCCccccc
Confidence 22222 233422 11 122233332 2333445555555552 26766655443 112 234567888887
Q ss_pred CCCCCCCCCccch
Q psy9825 172 VPRPIPEKKWFME 184 (280)
Q Consensus 172 ipR~IP~~~~y~~ 184 (280)
-..+||-.|.+..
T Consensus 215 ~~dkipFhPyf~~ 227 (385)
T 3cx5_C 215 NLDRIPMHSYFIF 227 (385)
T ss_dssp TTSEEETTTHHHH
T ss_pred CCCcCCCCchHHH
Confidence 7778888887643
No 6
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=15.88 E-value=25 Score=32.92 Aligned_cols=143 Identities=14% Similarity=0.331 Sum_probs=74.0
Q ss_pred CCCCcceEeeecchhhHHHHHHHhh-----hhhhhccccCCchhHHHHHHHhhhcccchhHHHHHHHHhCCchhhhHHHh
Q psy9825 26 AEDYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKRGSLLSTAIFVYALTSPVNGYAGGALYSRLGGRAWIRHCLL 100 (280)
Q Consensus 26 ~edy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~rG~llt~~i~~Y~l~~~~aGy~Sa~ly~~~~g~~W~~~~~l 100 (280)
.-|++|--|+...-|++.+++.+|. ++||-.+..|.....+.++.-+....+-||+=-. .|+ .-|-. .+.
T Consensus 72 dV~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~~W~~Gv~l~ll~m~~aF~GYvLPw--gQm--S~Wga-tVi 146 (379)
T 1pp9_C 72 DVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPW--GQM--SFWGA-TVI 146 (379)
T ss_dssp HSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTC--BHH--HHHHH-HHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcceehhhHHHHHHHHHHHheeeeccC--cch--hHHHH-HHH
Confidence 3468999999999999999998886 3455555434333334333333344444553220 010 11321 222
Q ss_pred hhh--hhhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHhhhhhhhhhhhh----hccCCCCCCCcccCCCCC
Q psy9825 101 SAC--LVPVLVCATALVVNFIAMYYHASRAIPFGTMVAVACICLFIILPLTLVGAVLG----RNLSGQQDNPCRVNAVPR 174 (280)
Q Consensus 101 t~~--l~P~~~~~~~~~lN~i~~~~~ss~a~pf~ti~~l~~lw~~i~~PL~~~G~~~g----~~~~~~~~~P~~~n~ipR 174 (280)
|.. ..|.+ +- ..+-|..|. .++.=.|+-=...+-++ +|..+++-..- .+ +...++|..+|+-..
T Consensus 147 TnLlsaIP~i--G~----~lv~wlwGG-fsV~~~TL~RFf~lHfl--lPfii~~lv~iHl~~LH-~~Gs~nPlg~~s~~d 216 (379)
T 1pp9_C 147 TNLLSAIPYI--GT----NLVEWIWGG-FSVDKATLTRFFAFHFI--LPFIIMAIAMVHLLFLH-ETGSNNPTGISSDVD 216 (379)
T ss_dssp HGGGGGSTTT--HH----HHHHHHHTS-SSSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHCCCCTTCSCCGGG
T ss_pred HHHHHHhccC--Cc----ceeeeeecC-ccccchHHHHHHHHHHH--HHHHHHHHHHHHhHhhc-cCCCCCCCCcCCCCC
Confidence 222 24422 11 122333332 23344566655666544 77766665431 12 233467777776555
Q ss_pred CCCCCCccc
Q psy9825 175 PIPEKKWFM 183 (280)
Q Consensus 175 ~IP~~~~y~ 183 (280)
+||-.|.+.
T Consensus 217 kipFhPyf~ 225 (379)
T 1pp9_C 217 KIPFHPYYT 225 (379)
T ss_dssp EEEHHHHHH
T ss_pred cCCCCcchh
Confidence 677666554
No 7
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=15.28 E-value=1.3e+02 Score=20.41 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccc
Q psy9825 229 ILMIVTVCVTIVCTYFLLNAEDYRWQ 254 (280)
Q Consensus 229 il~i~~~~vsI~~tY~~L~~Edy~Ww 254 (280)
.+....+.++++.=+..|+.|.+||.
T Consensus 21 ~l~~~v~vlAllIH~~lLs~~~fnWl 46 (56)
T 1lgh_A 21 VIWIVATVVAIAVHAAVLAAPGFNWI 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 34444555667777888999999984
No 8
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=14.72 E-value=38 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCcc
Q psy9825 170 NAVPRPIPEKKWF 182 (280)
Q Consensus 170 n~ipR~IP~~~~y 182 (280)
..=|||||+.|++
T Consensus 84 ~tkPK~Ip~TpfW 96 (131)
T 1lrr_A 84 QTKPKHVPGTPYW 96 (131)
T ss_dssp CCCCEECTTSSCE
T ss_pred CCCCCcCCCCCeE
Confidence 3458999999965
No 9
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=13.96 E-value=73 Score=27.44 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.6
Q ss_pred cccchhHHHHHHHHhCCchhhh
Q psy9825 75 SPVNGYAGGALYSRLGGRAWIR 96 (280)
Q Consensus 75 ~~~aGy~Sa~ly~~~~g~~W~~ 96 (280)
...+|-=|+.++++.||++|+.
T Consensus 170 lLLAGIRsAvLWRQ~GG~Rwql 191 (213)
T 1sdi_A 170 TLLAGIRAAVLWHQVGGGRLQL 191 (213)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhH
Confidence 4568999999999999999974
No 10
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=12.14 E-value=66 Score=18.41 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.1
Q ss_pred CCCCCCCCCCccchh
Q psy9825 171 AVPRPIPEKKWFMEP 185 (280)
Q Consensus 171 ~ipR~IP~~~~y~~~ 185 (280)
..||.+|-|||-.++
T Consensus 6 ~~P~~~Pg~~~an~s 20 (26)
T 2pv9_C 6 PNPRGYPGKFCANDS 20 (26)
T ss_dssp CEECSCTTTTCSCCC
T ss_pred CCCccCCCCccCCCc
Confidence 458899999886543
Done!