Query psy9825
Match_columns 280
No_of_seqs 217 out of 705
Neff 6.4
Searched_HMMs 13730
Date Fri Aug 16 20:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9825.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9825hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 22.7 24 0.0017 22.5 2.4 26 134-159 5-30 (64)
2 d1sdia_ a.198.1.1 (A:) Hypothe 20.1 20 0.0014 28.9 1.8 23 75-97 170-192 (213)
3 d1j3ea_ d.228.1.1 (A:) Replica 16.2 16 0.0011 26.8 0.2 12 171-182 69-80 (115)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 11.8 3E+02 0.022 22.0 7.4 54 28-81 73-133 (261)
5 d1xrda1 f.3.1.1 (A:1-52) Light 9.8 48 0.0035 20.6 1.0 16 238-253 25-40 (52)
6 d1opka1 b.34.2.1 (A:83-139) Ab 7.5 58 0.0042 19.9 0.7 12 25-36 29-40 (57)
7 d1ugva_ b.34.2.1 (A:) Olygophr 7.3 77 0.0056 20.2 1.3 12 24-35 38-49 (72)
8 d2auwa1 a.35.1.10 (A:88-154) H 5.5 1.3E+02 0.0097 19.1 1.8 10 168-177 58-67 (67)
9 d1v54g_ f.23.2.1 (G:) Mitochon 5.1 3E+02 0.022 18.2 3.6 19 140-158 19-37 (84)
10 d1ppjc2 f.21.1.2 (C:15-260) Mi 5.1 2.2E+02 0.016 22.5 3.3 25 26-50 58-82 (246)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=22.73 E-value=24 Score=22.46 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcc
Q psy9825 134 MVAVACICLFIILPLTLVGAVLGRNL 159 (280)
Q Consensus 134 i~~l~~lw~~i~~PL~~~G~~~g~~~ 159 (280)
.+..+...-.+-.|++++.|++|.+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 45567778889999999999999873
No 2
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=20.07 E-value=20 Score=28.92 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred cccchhHHHHHHHHhCCchhhhH
Q psy9825 75 SPVNGYAGGALYSRLGGRAWIRH 97 (280)
Q Consensus 75 ~~~aGy~Sa~ly~~~~g~~W~~~ 97 (280)
...||-=|+.++++.||++|+..
T Consensus 170 LLLAGIRaavLWrQ~GG~Rwqll 192 (213)
T d1sdia_ 170 TLLAGIRAAVLWHQVGGGRLQLM 192 (213)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHH
Confidence 45689999999999999999853
No 3
>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=16.23 E-value=16 Score=26.79 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=9.9
Q ss_pred CCCCCCCCCCcc
Q psy9825 171 AVPRPIPEKKWF 182 (280)
Q Consensus 171 ~ipR~IP~~~~y 182 (280)
.=|||||+.|++
T Consensus 69 tkPk~Ip~TpfW 80 (115)
T d1j3ea_ 69 TKPKHVPGTPYW 80 (115)
T ss_dssp CCCEECTTSSCE
T ss_pred CCCccCCCCCeE
Confidence 448999999976
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.77 E-value=3e+02 Score=21.98 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=35.4
Q ss_pred CCcceEeeecchhhHHHHHHHhh-----hhhhhccccC--CchhHHHHHHHhhhcccchhH
Q psy9825 28 DYRWQWTSFLAAYSTSFYVYMYS-----FYYFFFKTKR--GSLLSTAIFVYALTSPVNGYA 81 (280)
Q Consensus 28 dy~W~W~sf~~~g~~~~yif~ys-----i~yg~~s~~r--G~llt~~i~~Y~l~~~~aGy~ 81 (280)
+++|-.|+...-|++.+++.+|. ++++-.|..| .....+.++.-+....+-||+
T Consensus 73 ~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~ 133 (261)
T d3cx5c2 73 HNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYC 133 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhh
Confidence 47999999999999999998875 2344444333 345555555555555555554
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.75 E-value=48 Score=20.60 Aligned_cols=16 Identities=25% Similarity=0.881 Sum_probs=11.9
Q ss_pred HHHHHHHhhcCCCCcc
Q psy9825 238 TIVCTYFLLNAEDYRW 253 (280)
Q Consensus 238 sI~~tY~~L~~Edy~W 253 (280)
++..=+..|+.|.|||
T Consensus 25 Al~IHfiLLSt~rfNW 40 (52)
T d1xrda1 25 ALLIHFILLSTERFNW 40 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccc
Confidence 4445677788999998
No 6
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.49 E-value=58 Score=19.87 Aligned_cols=12 Identities=0% Similarity=-0.343 Sum_probs=7.8
Q ss_pred cCCCCcceEeee
Q psy9825 25 NAEDYRWQWTSF 36 (280)
Q Consensus 25 ~~edy~W~W~sf 36 (280)
..+|-+|||+.=
T Consensus 29 ~~~~~~~W~~~~ 40 (57)
T d1opka1 29 GYNHNGEWCEAQ 40 (57)
T ss_dssp EECTTSSEEEEE
T ss_pred EecCCCCEEEEE
Confidence 344557999854
No 7
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.29 E-value=77 Score=20.22 Aligned_cols=12 Identities=0% Similarity=-0.172 Sum_probs=8.1
Q ss_pred ccCCCCcceEee
Q psy9825 24 LNAEDYRWQWTS 35 (280)
Q Consensus 24 l~~edy~W~W~s 35 (280)
+..+|-+|||+.
T Consensus 38 ~~~~~~~~W~~g 49 (72)
T d1ugva_ 38 VHPSQEPGWLEG 49 (72)
T ss_dssp CCBCSSTTEEEE
T ss_pred eeccCCCCEEEE
Confidence 344556899985
No 8
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=5.54 E-value=1.3e+02 Score=19.08 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=7.9
Q ss_pred ccCCCCCCCC
Q psy9825 168 RVNAVPRPIP 177 (280)
Q Consensus 168 ~~n~ipR~IP 177 (280)
+....||+||
T Consensus 58 ~~~~~p~~ip 67 (67)
T d2auwa1 58 ETKTLPRTLP 67 (67)
T ss_dssp CCSSCCSSCC
T ss_pred CCccCcccCC
Confidence 4777889987
No 9
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.12 E-value=3e+02 Score=18.23 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=13.8
Q ss_pred HHHHHhhhhhhhhhhhhhc
Q psy9825 140 ICLFIILPLTLVGAVLGRN 158 (280)
Q Consensus 140 lw~~i~~PL~~~G~~~g~~ 158 (280)
+-+++++|.+.++++-.+.
T Consensus 19 is~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 19 LTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3466788888888877665
No 10
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.08 E-value=2.2e+02 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=21.1
Q ss_pred CCCCcceEeeecchhhHHHHHHHhh
Q psy9825 26 AEDYRWQWTSFLAAYSTSFYVYMYS 50 (280)
Q Consensus 26 ~edy~W~W~sf~~~g~~~~yif~ys 50 (280)
.-|++|-.|+...=|++.+++.+|-
T Consensus 58 ~v~~G~~iR~~H~~gas~~~~~~~l 82 (246)
T d1ppjc2 58 DVNYGWIIRYMHANGASMFFICLYM 82 (246)
T ss_dssp HSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhcchhHhHHHHHHHHHHH
Confidence 4457999999999999999988875
Done!