RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9825
         (280 letters)



>d2cxfa1 a.256.1.1 (A:83-249) Rap2 interacting protein X (RUFY3)
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 24.8 bits (54), Expect = 8.3
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 87  SRLGGRAWIRHCLLSACLVPVLVCATALVVNFIAMYYHAS 126
               GRAW+R  L+   L   +          ++ +Y  +
Sbjct: 95  PVGRGRAWLRLALMQKKLSEYMKAL-INKKELLSEFYEVN 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.336    0.146    0.487 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,124,310
Number of extensions: 52150
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 26
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 52 (24.0 bits)