Query psy9826
Match_columns 125
No_of_seqs 119 out of 434
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 20:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03650 MPC: Uncharacterised 100.0 2.6E-57 5.6E-62 336.1 2.1 103 17-119 2-104 (119)
2 KOG1589|consensus 100.0 2.8E-55 6.1E-60 323.2 3.8 110 12-122 2-111 (118)
3 KOG1590|consensus 100.0 4.9E-47 1.1E-51 283.6 6.1 103 20-122 10-115 (132)
4 PF03083 MtN3_slv: Sugar efflu 96.8 0.00033 7.1E-09 47.4 0.3 59 54-114 28-86 (87)
5 KOG1623|consensus 92.5 0.12 2.5E-06 42.9 3.0 77 36-114 130-211 (243)
6 PF15048 OSTbeta: Organic solu 46.8 26 0.00056 26.8 3.2 44 75-118 22-68 (125)
7 KOG1623|consensus 38.2 35 0.00075 28.4 3.0 61 54-115 34-94 (243)
8 PF14795 Leucyl-specific: Leuc 35.2 15 0.00033 24.4 0.4 14 24-39 43-56 (56)
9 COG5557 Polysulphide reductase 23.1 41 0.00089 30.0 1.1 67 19-88 264-343 (401)
10 PF11676 DUF3272: Protein of u 19.4 78 0.0017 21.4 1.6 27 86-112 20-46 (61)
No 1
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=100.00 E-value=2.6e-57 Score=336.08 Aligned_cols=103 Identities=60% Similarity=0.997 Sum_probs=99.7
Q ss_pred CcccchhhhhCCCCCCceeecccccchhhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhh
Q psy9826 17 VPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFV 96 (125)
Q Consensus 17 ~~~~~~~~~~~paGpkT~hFWgPv~kWgi~iA~i~D~~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a~n~~~ 96 (125)
+|+.+|++||||+||||||||||++|||||||||+|++||||+||++||+|||+||+||||||++|+||||+||+||++|
T Consensus 2 ~~~~~~~~~~~~~gp~T~hFWaP~~kWgl~iA~i~D~~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~ 81 (119)
T PF03650_consen 2 FPAKFRRFWNSPAGPKTTHFWAPVAKWGLPIAGIADMKRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFN 81 (119)
T ss_pred hhHHHHHHHcCccccceEEeehhheeheeeeeehhhcCCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhchhhhhccC
Q psy9826 97 AATSIYQLTRAYLYQQEQKKLAL 119 (125)
Q Consensus 97 ~~~q~~Ql~R~~~y~~~~~~~~~ 119 (125)
+++|++|++|+++|++.++++++
T Consensus 82 ~~~q~~Ql~R~~~y~~~~~~~~~ 104 (119)
T PF03650_consen 82 ATTQLYQLYRKLNYQYSQKKEAK 104 (119)
T ss_pred HHHHHHHHHHHHHHHhhcCchhH
Confidence 99999999999999998876654
No 2
>KOG1589|consensus
Probab=100.00 E-value=2.8e-55 Score=323.21 Aligned_cols=110 Identities=71% Similarity=1.159 Sum_probs=103.5
Q ss_pred hhhhcCcccchhhhhCCCCCCceeecccccchhhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhh
Q psy9826 12 AVDRFVPSKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFS 91 (125)
Q Consensus 12 ~~~~~~~~~~~~~~~~paGpkT~hFWgPv~kWgi~iA~i~D~~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a 91 (125)
..|+++ .++|++||||+||||||||+|++|||||+|||+|++||||+||+.|++||++||+||+|||++|+||||+||+
T Consensus 2 ~~~~~~-~k~r~~WnhpaGPKTVhFWAPt~KWglv~AglaD~arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~Lfs 80 (118)
T KOG1589|consen 2 AADKFV-AKLRPLWNHPAGPKTVHFWAPTFKWGLVIAGLADLARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFS 80 (118)
T ss_pred cHHHHH-HHHHHHhcCCCCCcEEEEecchhhhhheeecHHhhcCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhH
Confidence 457777 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHhhchhhhhccCCCC
Q psy9826 92 VNVFVAATSIYQLTRAYLYQQEQKKLALPAP 122 (125)
Q Consensus 92 ~n~~~~~~q~~Ql~R~~~y~~~~~~~~~~~~ 122 (125)
||+|++++|+|||.|+++|+..++..+.|.+
T Consensus 81 VN~f~~~tg~~QL~Ri~~y~~~~~~~~~~~~ 111 (118)
T KOG1589|consen 81 VNFFVAITGIYQLTRIANYQQQQKALEGESE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999988777665443
No 3
>KOG1590|consensus
Probab=100.00 E-value=4.9e-47 Score=283.60 Aligned_cols=103 Identities=23% Similarity=0.424 Sum_probs=94.1
Q ss_pred cchhhhhCCCCCC---ceeecccccchhhhhhhcccCCCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhh
Q psy9826 20 KARPLWEHPAGPK---TVFFWAPMFKWGLVIAGIGDLTRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFV 96 (125)
Q Consensus 20 ~~~~~~~~paGpk---T~hFWgPv~kWgi~iA~i~D~~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a~n~~~ 96 (125)
++..+.+++-+++ ||||||||+|||||||+|.||+|+||.|||+||+|||+||.+||||+|.|+|||||||+||++|
T Consensus 10 ~~~~~~~ske~r~Y~~sTHFWGPvaNwGlpiAal~DmkK~P~~ISG~MT~AL~~YS~vFMRfA~~VqPRN~LLfaCHa~N 89 (132)
T KOG1590|consen 10 RFQDFLNSKEFRKYFMSTHFWGPVANWGLPIAALVDMKKSPEMISGRMTSALCLYSAVFMRFAWMVQPRNYLLFACHATN 89 (132)
T ss_pred HHHHHhcChHHhhhhhhcccccchhhccchHHHHHhccCChhhccccchHHHHHHHHHHHHHHHhcCcchhhHHHHhhhh
Confidence 3455666666665 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhchhhhhccCCCC
Q psy9826 97 AATSIYQLTRAYLYQQEQKKLALPAP 122 (125)
Q Consensus 97 ~~~q~~Ql~R~~~y~~~~~~~~~~~~ 122 (125)
+++|++|++|+++|+|....++++++
T Consensus 90 ~taQ~~Qg~Rf~~~~Y~~~~~e~~~~ 115 (132)
T KOG1590|consen 90 ETAQLAQGSRFLNYNYGSTGEEKKKP 115 (132)
T ss_pred HHHHHHHHHHHHHHHhcccchhhccc
Confidence 99999999999999998877776544
No 4
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=96.83 E-value=0.00033 Score=47.40 Aligned_cols=59 Identities=25% Similarity=0.497 Sum_probs=54.6
Q ss_pred CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhhHHHHHHHHHhhchhh
Q psy9826 54 TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQ 114 (125)
Q Consensus 54 ~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 114 (125)
+|..|.+|..+..+..+-+.+|.+|.+.+ +|+.++.+|++-...+++|+.=++.|..++
T Consensus 28 ~ks~~~~~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 28 TKSTGSVSFPPFLAMFFNCVLWLIYGILI--NDWPIIVPNVFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred CCCCCccceehhHHHhhhccHhhhhhhhc--CCeeEEeeHHHHHHHHHHHHhheEEeCCCC
Confidence 68999999999999999999999999998 599999999999999999999888887654
No 5
>KOG1623|consensus
Probab=92.53 E-value=0.12 Score=42.89 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=64.3
Q ss_pred ecccccchhhhhhhcccC-----CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhhHHHHHHHHHhh
Q psy9826 36 FWAPMFKWGLVIAGIGDL-----TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLY 110 (125)
Q Consensus 36 FWgPv~kWgi~iA~i~D~-----~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a~n~~~~~~q~~Ql~R~~~y 110 (125)
+-+-++|=....|.++|| +|..|.+....+.|+.+.+..|+=|.+.+ +|..++.-|+.-...++.||.=+.+|
T Consensus 130 ~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli--~D~~IaipN~iG~~l~~~QL~Ly~~y 207 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLI--KDFFIAIPNVLGFLLGLIQLILYFKY 207 (243)
T ss_pred hhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHh--cCeEEEcccHHHHHHHHHHHHHhhhc
Confidence 444555666666777776 58999999999999999999999999988 99999999999999999999988776
Q ss_pred chhh
Q psy9826 111 QQEQ 114 (125)
Q Consensus 111 ~~~~ 114 (125)
....
T Consensus 208 ~~~~ 211 (243)
T KOG1623|consen 208 PKTT 211 (243)
T ss_pred CCCc
Confidence 5544
No 6
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=46.78 E-value=26 Score=26.77 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=36.6
Q ss_pred Hhhhhhee---ecccchhhhhhhhhhhhHHHHHHHHHhhchhhhhcc
Q psy9826 75 WSRYSLVI---IPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQKKLA 118 (125)
Q Consensus 75 w~R~a~~I---~PrNy~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 118 (125)
=|+|.+.+ +|-||.+++--+.....++.-|.|-++-++..|..+
T Consensus 22 emlW~fR~ED~tpWNysiL~Ls~vvlvi~~~LLgrsi~ANRnrK~~~ 68 (125)
T PF15048_consen 22 EMLWFFRVEDATPWNYSILALSFVVLVISFFLLGRSIQANRNRKMQP 68 (125)
T ss_pred HHHHheecCCCCCcchHHHHHHHHHHHHHHHHHHHHhHhcccccccc
Confidence 36666766 699999999999999999999999999888776653
No 7
>KOG1623|consensus
Probab=38.24 E-value=35 Score=28.44 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCCccccccccchhHHHhhHHHhhhhheeecccchhhhhhhhhhhhHHHHHHHHHhhchhhh
Q psy9826 54 TRPAEKLSISQSSALAATGLIWSRYSLVIIPKNWSLFSVNVFVAATSIYQLTRAYLYQQEQK 115 (125)
Q Consensus 54 ~kppe~IS~~mt~aL~~~g~iw~R~a~~I~PrNy~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 115 (125)
+|..|.+|.-=-..=.+-+++|+||.+-..= .+++-.+|.+....+..=+.=++-|...++
T Consensus 34 kkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~-d~llitIN~~G~~ie~~Yi~~f~~ya~~k~ 94 (243)
T KOG1623|consen 34 KKSVEGFSSLPFLMGLLSCSLWLYYGLLKVH-DYLLITINGIGLVIETVYISIFLYYAPKKK 94 (243)
T ss_pred ccCcCCCCCcCcHHHHHHHHHHHHhhhhccC-ceEEEEEehhcHHHHHHHHHHHheecCchh
Confidence 6788988876666666788999999965443 799999999999999888887777765554
No 8
>PF14795 Leucyl-specific: Leucine-tRNA synthetase-specific domain; PDB: 1OBC_A 2BTE_A 2V0G_A 2BYT_A 1OBH_A 1H3N_A 2V0C_A.
Probab=35.16 E-value=15 Score=24.44 Aligned_cols=14 Identities=50% Similarity=1.101 Sum_probs=9.1
Q ss_pred hhhCCCCCCceeeccc
Q psy9826 24 LWEHPAGPKTVFFWAP 39 (125)
Q Consensus 24 ~~~~paGpkT~hFWgP 39 (125)
+..|.-| |+|||-|
T Consensus 43 LR~hedG--~~h~WKP 56 (56)
T PF14795_consen 43 LRPHEDG--TLHFWKP 56 (56)
T ss_dssp EEE-TTS--SEEEEEE
T ss_pred cccCCCC--eEeecCC
Confidence 3445544 8999987
No 9
>COG5557 Polysulphide reductase [Energy production and conversion]
Probab=23.07 E-value=41 Score=30.02 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=49.8
Q ss_pred ccchhhhhCCCCCCceeecccccchhhhhhhccc---------CCCCccccccccchhHHHhhHHHhhhhheee----cc
Q psy9826 19 SKARPLWEHPAGPKTVFFWAPMFKWGLVIAGIGD---------LTRPAEKLSISQSSALAATGLIWSRYSLVII----PK 85 (125)
Q Consensus 19 ~~~~~~~~~paGpkT~hFWgPv~kWgi~iA~i~D---------~~kppe~IS~~mt~aL~~~g~iw~R~a~~I~----Pr 85 (125)
...+.-|.+--+|-+.|||. ++=|.+|++|.+= +.++-..| .+.+++.+.|..+-||-+.|. |.
T Consensus 264 ~~l~eala~vF~~~~g~Fls-v~Fwl~vl~g~a~pl~ll~~pk~~nd~r~l--~~a~~l~vf~~~~egwrl~i~gqv~~~ 340 (401)
T COG5557 264 LILREALALVFLPTAGDFLS-VMFWLEVLLGMAFPLVLLRVPKLRNDSRML--FLAALLAVFGVFCEGWRLTISGQVVAF 340 (401)
T ss_pred hHHHHHHHHhhcccchhHHH-HHHHHHHHHhcccceEEEEccccccceeee--eHHHHHHHHHHHhhcEEEEeeeEEecc
Confidence 34556677777888889999 8889999997653 23333333 678899999999999988876 66
Q ss_pred cch
Q psy9826 86 NWS 88 (125)
Q Consensus 86 Ny~ 88 (125)
||+
T Consensus 341 n~~ 343 (401)
T COG5557 341 NYL 343 (401)
T ss_pred ccC
Confidence 753
No 10
>PF11676 DUF3272: Protein of unknown function (DUF3272); InterPro: IPR021690 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=19.43 E-value=78 Score=21.42 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.6
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHhhch
Q psy9826 86 NWSLFSVNVFVAATSIYQLTRAYLYQQ 112 (125)
Q Consensus 86 Ny~L~a~n~~~~~~q~~Ql~R~~~y~~ 112 (125)
|..+++-+.+.+.-=++-++|.++--|
T Consensus 20 N~ai~~g~y~~A~Fw~~Ll~Rnl~~aY 46 (61)
T PF11676_consen 20 NEAIMSGDYFFAFFWGFLLFRNLRVAY 46 (61)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999988444
Done!